Query 031568
Match_columns 157
No_of_seqs 218 out of 2363
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 15:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 100.0 2.7E-35 5.9E-40 214.4 16.5 149 1-156 56-205 (205)
2 PLN02589 caffeoyl-CoA O-methyl 100.0 6E-34 1.3E-38 212.3 17.4 156 1-156 90-246 (247)
3 COG4122 Predicted O-methyltran 100.0 4.7E-34 1E-38 208.2 15.7 147 1-156 70-218 (219)
4 PLN02476 O-methyltransferase 100.0 1E-32 2.2E-37 208.1 17.6 149 1-156 129-278 (278)
5 PLN02781 Probable caffeoyl-CoA 100.0 6E-32 1.3E-36 201.1 17.7 155 1-157 79-234 (234)
6 KOG1663 O-methyltransferase [S 100.0 2.2E-29 4.8E-34 182.3 15.4 150 1-156 84-237 (237)
7 PF12847 Methyltransf_18: Meth 99.5 4.7E-14 1E-18 93.1 7.9 92 2-100 13-111 (112)
8 PRK04457 spermidine synthase; 99.5 4.2E-13 9.1E-18 101.5 13.9 92 2-99 78-176 (262)
9 COG2242 CobL Precorrin-6B meth 99.5 7.2E-13 1.6E-17 94.2 13.2 86 8-102 52-137 (187)
10 PF13578 Methyltransf_24: Meth 99.4 2E-13 4.4E-18 89.6 5.7 95 1-101 7-106 (106)
11 PLN03075 nicotianamine synthas 99.4 6.7E-13 1.4E-17 101.3 9.3 92 2-100 136-233 (296)
12 COG1092 Predicted SAM-dependen 99.4 1.6E-12 3.5E-17 102.7 11.0 88 13-103 239-339 (393)
13 PF07279 DUF1442: Protein of u 99.4 3.5E-12 7.7E-17 92.3 11.7 124 5-154 58-185 (218)
14 PRK14901 16S rRNA methyltransf 99.4 7.9E-12 1.7E-16 100.8 14.2 132 2-154 264-429 (434)
15 TIGR00138 gidB 16S rRNA methyl 99.4 3E-12 6.5E-17 91.9 10.0 89 1-99 53-141 (181)
16 PRK14903 16S rRNA methyltransf 99.4 2.3E-11 4.9E-16 98.0 14.9 95 2-103 249-369 (431)
17 PRK00107 gidB 16S rRNA methylt 99.4 5.8E-12 1.2E-16 90.8 9.9 89 1-99 56-144 (187)
18 PRK08287 cobalt-precorrin-6Y C 99.4 2.9E-11 6.3E-16 87.0 13.5 90 2-101 43-132 (187)
19 PRK15128 23S rRNA m(5)C1962 me 99.4 3.4E-11 7.4E-16 95.9 14.9 86 13-101 242-340 (396)
20 PRK00377 cbiT cobalt-precorrin 99.4 1.3E-11 2.8E-16 89.7 11.4 90 6-101 56-146 (198)
21 TIGR02469 CbiT precorrin-6Y C5 99.4 8.3E-12 1.8E-16 83.4 9.5 91 2-99 31-121 (124)
22 TIGR00446 nop2p NOL1/NOP2/sun 99.3 6.7E-11 1.4E-15 89.7 14.7 94 2-103 83-202 (264)
23 PRK14902 16S rRNA methyltransf 99.3 4E-11 8.7E-16 97.0 14.3 95 2-103 262-382 (444)
24 PF13659 Methyltransf_26: Meth 99.3 1.6E-11 3.5E-16 81.5 10.0 91 2-98 10-113 (117)
25 PRK10901 16S rRNA methyltransf 99.3 4.3E-11 9.4E-16 96.4 14.1 129 2-154 256-423 (427)
26 PF10672 Methyltrans_SAM: S-ad 99.3 1.9E-11 4.2E-16 93.1 11.2 89 9-101 141-239 (286)
27 TIGR00563 rsmB ribosomal RNA s 99.3 2.9E-11 6.2E-16 97.4 12.6 132 2-155 250-423 (426)
28 PRK14904 16S rRNA methyltransf 99.3 4.4E-11 9.6E-16 96.8 13.6 93 2-103 262-380 (445)
29 PRK00811 spermidine synthase; 99.3 9.1E-11 2E-15 89.8 14.4 86 8-99 94-190 (283)
30 PRK01581 speE spermidine synth 99.3 7.2E-11 1.6E-15 92.4 13.5 86 8-99 168-267 (374)
31 TIGR03533 L3_gln_methyl protei 99.3 1.1E-10 2.4E-15 89.3 14.0 91 2-100 133-251 (284)
32 PLN02366 spermidine synthase 99.3 1.8E-10 3.8E-15 89.0 14.6 84 11-99 111-205 (308)
33 COG4123 Predicted O-methyltran 99.3 3E-11 6.6E-16 89.9 9.1 92 2-98 56-168 (248)
34 PLN02823 spermine synthase 99.3 1.5E-10 3.3E-15 90.3 13.3 86 8-99 121-219 (336)
35 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.7E-10 5.8E-15 82.6 13.8 93 2-99 28-131 (194)
36 PRK11783 rlmL 23S rRNA m(2)G24 99.3 6E-11 1.3E-15 100.8 11.1 93 2-101 550-657 (702)
37 PF05175 MTS: Methyltransferas 99.3 3.4E-11 7.4E-16 85.5 8.1 88 2-98 43-138 (170)
38 PRK07402 precorrin-6B methylas 99.3 1.3E-10 2.8E-15 84.3 11.3 92 2-101 52-143 (196)
39 PRK11805 N5-glutamine S-adenos 99.2 6.4E-11 1.4E-15 91.6 10.0 90 2-99 145-262 (307)
40 PRK13944 protein-L-isoaspartat 99.2 5.5E-11 1.2E-15 86.9 8.8 88 2-99 84-172 (205)
41 PRK00121 trmB tRNA (guanine-N( 99.2 2.2E-10 4.7E-15 83.6 11.6 94 1-99 51-155 (202)
42 COG2519 GCD14 tRNA(1-methylade 99.2 9.2E-11 2E-15 87.0 8.9 84 5-98 109-193 (256)
43 COG2226 UbiE Methylase involve 99.2 9.9E-11 2.2E-15 87.0 9.1 94 1-102 62-158 (238)
44 PRK13942 protein-L-isoaspartat 99.2 7.7E-11 1.7E-15 86.6 8.4 88 1-99 87-175 (212)
45 PF13847 Methyltransf_31: Meth 99.2 1E-10 2.3E-15 81.4 8.4 94 2-102 15-112 (152)
46 COG4106 Tam Trans-aconitate me 99.2 6.7E-11 1.5E-15 85.8 7.2 86 1-100 41-129 (257)
47 TIGR00417 speE spermidine synt 99.2 1.1E-09 2.3E-14 83.4 14.2 86 8-99 90-185 (270)
48 COG0144 Sun tRNA and rRNA cyto 99.2 5.9E-10 1.3E-14 87.8 13.2 95 4-103 170-291 (355)
49 PRK11933 yebU rRNA (cytosine-C 99.2 5.2E-10 1.1E-14 90.8 12.9 93 4-103 127-245 (470)
50 PF01135 PCMT: Protein-L-isoas 99.2 7.4E-11 1.6E-15 86.4 7.2 88 1-99 83-171 (209)
51 PF03602 Cons_hypoth95: Conser 99.2 6.5E-10 1.4E-14 79.9 11.6 88 11-101 62-154 (183)
52 TIGR00080 pimt protein-L-isoas 99.2 1.7E-10 3.6E-15 84.9 8.7 88 1-99 88-176 (215)
53 PF01209 Ubie_methyltran: ubiE 99.2 1.3E-10 2.9E-15 86.5 7.9 92 1-100 58-153 (233)
54 PRK11036 putative S-adenosyl-L 99.2 4.7E-10 1E-14 84.5 10.5 89 2-98 56-147 (255)
55 PF01564 Spermine_synth: Sperm 99.1 2.8E-09 6E-14 80.1 14.0 82 13-100 99-191 (246)
56 COG0421 SpeE Spermidine syntha 99.1 2.1E-09 4.5E-14 82.0 13.2 90 4-99 89-189 (282)
57 COG2518 Pcm Protein-L-isoaspar 99.1 1.8E-10 3.9E-15 83.6 6.9 85 2-99 84-168 (209)
58 TIGR00536 hemK_fam HemK family 99.1 7.5E-10 1.6E-14 84.8 9.8 92 2-101 126-245 (284)
59 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3E-09 6.5E-14 77.4 11.9 82 13-101 75-160 (199)
60 PF08241 Methyltransf_11: Meth 99.1 1.9E-10 4.2E-15 73.0 5.0 85 2-98 8-95 (95)
61 COG0742 N6-adenine-specific me 99.1 2.7E-09 5.9E-14 76.3 10.7 87 11-101 63-155 (187)
62 PRK15001 SAM-dependent 23S rib 99.1 1.5E-09 3.3E-14 85.9 10.1 90 2-99 240-339 (378)
63 TIGR00095 RNA methyltransferas 99.1 6.1E-09 1.3E-13 75.3 12.3 87 12-101 70-160 (189)
64 PRK15451 tRNA cmo(5)U34 methyl 99.0 1.6E-09 3.6E-14 81.3 9.2 91 2-101 68-165 (247)
65 PRK01544 bifunctional N5-gluta 99.0 1.1E-09 2.3E-14 90.0 8.9 90 2-99 150-268 (506)
66 PRK03612 spermidine synthase; 99.0 2.9E-09 6.2E-14 87.8 11.1 92 2-100 309-415 (521)
67 TIGR02752 MenG_heptapren 2-hep 99.0 2.1E-09 4.6E-14 79.6 9.0 91 2-100 57-151 (231)
68 PRK14121 tRNA (guanine-N(7)-)- 99.0 4.4E-09 9.4E-14 83.3 11.1 91 2-98 134-233 (390)
69 PLN02244 tocopherol O-methyltr 99.0 1.8E-09 3.9E-14 84.6 8.9 92 2-101 130-224 (340)
70 smart00828 PKS_MT Methyltransf 99.0 1.9E-09 4.1E-14 79.5 8.3 93 2-102 11-106 (224)
71 TIGR03534 RF_mod_PrmC protein- 99.0 4.8E-09 1E-13 78.4 10.3 90 2-100 99-217 (251)
72 PF08704 GCD14: tRNA methyltra 99.0 2.6E-09 5.7E-14 80.0 8.7 87 5-98 55-144 (247)
73 PRK11873 arsM arsenite S-adeno 99.0 4.3E-09 9.3E-14 79.9 9.9 94 2-103 89-186 (272)
74 TIGR03704 PrmC_rel_meth putati 99.0 5.2E-09 1.1E-13 78.8 10.1 87 5-100 101-216 (251)
75 PF02475 Met_10: Met-10+ like- 99.0 4.8E-09 1E-13 76.3 9.5 88 2-98 113-200 (200)
76 TIGR00406 prmA ribosomal prote 98.9 6.5E-09 1.4E-13 79.8 9.5 83 11-102 179-261 (288)
77 PRK00312 pcm protein-L-isoaspa 98.9 3.8E-09 8.3E-14 77.4 7.9 85 2-99 90-174 (212)
78 PF02353 CMAS: Mycolic acid cy 98.9 6.6E-09 1.4E-13 79.1 9.1 85 8-103 80-169 (273)
79 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 6.3E-08 1.4E-12 74.1 14.3 113 5-140 100-242 (283)
80 PRK14967 putative methyltransf 98.9 1.3E-08 2.7E-13 75.3 10.0 76 13-98 58-157 (223)
81 PRK03522 rumB 23S rRNA methylu 98.9 2.1E-08 4.5E-13 77.9 11.6 79 13-98 194-272 (315)
82 TIGR02085 meth_trns_rumB 23S r 98.9 2E-08 4.3E-13 79.8 11.6 90 2-99 243-333 (374)
83 PLN02233 ubiquinone biosynthes 98.9 8.3E-09 1.8E-13 78.1 9.1 93 2-101 85-183 (261)
84 TIGR00740 methyltransferase, p 98.9 1.8E-08 3.9E-13 75.2 10.7 92 2-102 65-163 (239)
85 PF13649 Methyltransf_25: Meth 98.9 7.1E-09 1.5E-13 67.2 7.1 84 2-94 9-101 (101)
86 PLN02396 hexaprenyldihydroxybe 98.9 1.9E-08 4E-13 78.3 10.5 91 2-101 143-236 (322)
87 PRK01683 trans-aconitate 2-met 98.9 8.7E-09 1.9E-13 77.6 8.5 84 2-99 43-129 (258)
88 TIGR01177 conserved hypothetic 98.9 8.7E-09 1.9E-13 80.4 8.6 90 2-99 192-293 (329)
89 COG2890 HemK Methylase of poly 98.9 1.6E-08 3.5E-13 77.3 9.7 88 4-101 124-239 (280)
90 PRK14103 trans-aconitate 2-met 98.9 1E-08 2.2E-13 77.3 8.2 82 2-99 41-125 (255)
91 TIGR00537 hemK_rel_arch HemK-r 98.9 1.9E-08 4.1E-13 71.9 9.1 86 2-100 31-140 (179)
92 PRK13943 protein-L-isoaspartat 98.9 2.1E-08 4.6E-13 77.9 10.0 87 2-99 92-179 (322)
93 PRK14968 putative methyltransf 98.9 2.2E-08 4.8E-13 71.5 9.4 88 2-99 35-147 (188)
94 PRK14966 unknown domain/N5-glu 98.9 2E-08 4.3E-13 80.2 9.4 88 5-100 266-381 (423)
95 PRK11207 tellurite resistance 98.9 1.7E-08 3.7E-13 73.3 8.4 86 2-98 42-132 (197)
96 PRK09489 rsmC 16S ribosomal RN 98.8 2.5E-08 5.5E-13 78.2 9.5 86 2-98 208-301 (342)
97 PRK09328 N5-glutamine S-adenos 98.8 2.8E-08 6.1E-13 75.4 9.4 89 2-99 120-237 (275)
98 TIGR00479 rumA 23S rRNA (uraci 98.8 7.2E-08 1.6E-12 77.9 11.9 90 2-98 304-394 (431)
99 COG2230 Cfa Cyclopropane fatty 98.8 3.8E-08 8.3E-13 74.7 9.4 89 5-103 86-179 (283)
100 TIGR02716 C20_methyl_CrtF C-20 98.8 3.2E-08 6.9E-13 76.5 9.1 92 2-103 161-257 (306)
101 COG0220 Predicted S-adenosylme 98.8 1E-07 2.2E-12 70.6 11.1 94 1-99 59-163 (227)
102 PRK04338 N(2),N(2)-dimethylgua 98.8 7E-08 1.5E-12 76.7 10.8 122 5-135 72-200 (382)
103 PF08242 Methyltransf_12: Meth 98.8 1.1E-09 2.3E-14 70.8 0.4 89 2-96 8-99 (99)
104 PRK04266 fibrillarin; Provisio 98.8 4.7E-08 1E-12 72.5 9.0 91 2-99 84-175 (226)
105 TIGR00477 tehB tellurite resis 98.8 4.2E-08 9.1E-13 71.2 8.6 85 2-98 42-131 (195)
106 TIGR00308 TRM1 tRNA(guanine-26 98.8 9E-08 1.9E-12 75.9 10.8 114 14-135 69-189 (374)
107 PF09445 Methyltransf_15: RNA 98.8 2.6E-08 5.7E-13 70.1 6.7 69 2-76 11-79 (163)
108 COG2521 Predicted archaeal met 98.8 8.9E-09 1.9E-13 75.7 4.3 93 1-98 143-243 (287)
109 PRK00517 prmA ribosomal protei 98.8 3.5E-07 7.6E-12 68.8 13.0 77 11-102 139-215 (250)
110 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.4E-07 3E-12 76.5 11.2 91 2-99 309-399 (443)
111 COG2227 UbiG 2-polyprenyl-3-me 98.7 7.2E-08 1.6E-12 71.2 8.5 82 13-103 80-164 (243)
112 COG2264 PrmA Ribosomal protein 98.7 4.3E-07 9.4E-12 69.6 12.6 87 8-102 178-265 (300)
113 COG2520 Predicted methyltransf 98.7 1.1E-07 2.4E-12 74.1 9.6 81 14-102 211-291 (341)
114 PF02390 Methyltransf_4: Putat 98.7 1.9E-07 4E-12 67.9 10.0 92 2-98 29-131 (195)
115 PRK06922 hypothetical protein; 98.7 1.3E-07 2.7E-12 79.1 10.0 93 2-101 430-538 (677)
116 PRK00216 ubiE ubiquinone/menaq 98.7 8.6E-08 1.9E-12 70.9 8.3 92 2-100 63-158 (239)
117 PTZ00098 phosphoethanolamine N 98.7 6.7E-08 1.4E-12 73.3 7.7 90 2-102 64-158 (263)
118 PRK05031 tRNA (uracil-5-)-meth 98.7 3.1E-07 6.7E-12 72.7 11.4 82 13-98 227-318 (362)
119 PF06325 PrmA: Ribosomal prote 98.7 2.9E-08 6.3E-13 76.2 5.3 88 5-103 174-262 (295)
120 PF05401 NodS: Nodulation prot 98.7 5.5E-08 1.2E-12 70.0 6.2 86 2-100 55-146 (201)
121 PRK08317 hypothetical protein; 98.7 4.7E-07 1E-11 66.7 11.0 94 2-104 31-128 (241)
122 PLN02232 ubiquinone biosynthes 98.7 8.6E-08 1.9E-12 67.4 6.7 77 18-101 1-82 (160)
123 PRK00536 speE spermidine synth 98.7 4.8E-07 1E-11 68.4 11.0 77 11-100 92-171 (262)
124 PLN02336 phosphoethanolamine N 98.6 2E-07 4.3E-12 76.1 9.4 91 2-102 278-371 (475)
125 PF03059 NAS: Nicotianamine sy 98.6 1.5E-07 3.2E-12 71.5 8.0 91 3-100 134-230 (276)
126 COG2813 RsmC 16S RNA G1207 met 98.6 2E-07 4.4E-12 71.1 8.7 84 5-98 173-264 (300)
127 PRK12335 tellurite resistance 98.6 2.2E-07 4.9E-12 71.2 8.9 85 2-98 132-221 (287)
128 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 2.5E-07 5.3E-12 67.7 8.5 90 2-101 51-144 (223)
129 cd02440 AdoMet_MTases S-adenos 98.6 7.4E-07 1.6E-11 56.3 9.6 81 12-99 19-103 (107)
130 PLN02672 methionine S-methyltr 98.6 4.1E-07 8.8E-12 80.1 10.5 93 3-101 131-279 (1082)
131 PLN02490 MPBQ/MSBQ methyltrans 98.6 3E-07 6.6E-12 72.0 8.8 87 2-99 125-214 (340)
132 COG2265 TrmA SAM-dependent met 98.6 6.6E-07 1.4E-11 72.2 10.7 91 2-98 303-394 (432)
133 KOG1540 Ubiquinone biosynthesi 98.6 4.7E-07 1E-11 67.5 8.7 78 14-98 130-212 (296)
134 KOG4300 Predicted methyltransf 98.6 3.9E-07 8.5E-12 66.0 8.1 79 13-98 98-180 (252)
135 PF05891 Methyltransf_PK: AdoM 98.6 1.1E-07 2.5E-12 69.4 5.3 112 14-141 78-196 (218)
136 TIGR02072 BioC biotin biosynth 98.5 3.3E-07 7.1E-12 67.7 7.5 88 2-101 46-136 (240)
137 TIGR02143 trmA_only tRNA (urac 98.5 1.6E-06 3.5E-11 68.4 11.4 82 14-99 219-310 (353)
138 TIGR00452 methyltransferase, p 98.5 1.1E-06 2.4E-11 68.2 9.7 93 2-103 133-228 (314)
139 KOG2730 Methylase [General fun 98.5 4.8E-07 1.1E-11 66.0 7.0 68 4-76 108-175 (263)
140 PRK15068 tRNA mo(5)U34 methylt 98.5 1.2E-06 2.6E-11 68.3 9.7 93 2-103 134-229 (322)
141 PRK05134 bifunctional 3-demeth 98.5 2.4E-06 5.2E-11 63.3 10.7 79 14-100 70-151 (233)
142 PRK11705 cyclopropane fatty ac 98.4 1.6E-06 3.5E-11 69.1 9.0 83 5-102 182-269 (383)
143 PTZ00146 fibrillarin; Provisio 98.4 2.7E-06 5.9E-11 65.1 9.7 91 2-99 144-236 (293)
144 KOG2904 Predicted methyltransf 98.4 1.4E-06 3E-11 65.7 7.6 88 8-101 166-286 (328)
145 smart00650 rADc Ribosomal RNA 98.4 2.2E-06 4.9E-11 60.6 8.3 89 2-102 25-115 (169)
146 COG4262 Predicted spermidine s 98.4 4.4E-06 9.5E-11 65.4 10.3 84 11-100 309-407 (508)
147 PF03848 TehB: Tellurite resis 98.4 2.3E-06 5.1E-11 61.8 8.3 86 4-101 44-134 (192)
148 PF01170 UPF0020: Putative RNA 98.4 2.5E-06 5.5E-11 61.1 8.4 77 16-99 63-150 (179)
149 TIGR01983 UbiG ubiquinone bios 98.4 4.8E-06 1.1E-10 61.2 10.0 80 14-100 67-149 (224)
150 TIGR03438 probable methyltrans 98.4 4.1E-06 9E-11 64.7 9.6 96 2-99 75-176 (301)
151 KOG1271 Methyltransferases [Ge 98.3 7.7E-06 1.7E-10 58.3 9.4 83 14-103 91-184 (227)
152 PHA03411 putative methyltransf 98.3 3.9E-06 8.5E-11 63.7 8.5 83 2-98 76-181 (279)
153 PF06962 rRNA_methylase: Putat 98.3 2.1E-06 4.6E-11 58.8 6.3 79 16-99 1-91 (140)
154 KOG1122 tRNA and rRNA cytosine 98.3 3.5E-06 7.5E-11 66.8 8.2 93 4-102 255-373 (460)
155 TIGR03587 Pse_Me-ase pseudamin 98.3 2.5E-06 5.4E-11 62.4 6.8 84 2-101 55-143 (204)
156 PRK10258 biotin biosynthesis p 98.3 2.4E-06 5.2E-11 64.1 6.8 76 13-101 63-141 (251)
157 PRK13255 thiopurine S-methyltr 98.3 3E-06 6.4E-11 62.6 7.0 84 4-98 51-153 (218)
158 TIGR02021 BchM-ChlM magnesium 98.3 8.5E-06 1.8E-10 59.9 9.5 86 2-99 67-157 (219)
159 PRK11088 rrmA 23S rRNA methylt 98.3 2.3E-06 4.9E-11 65.1 6.5 81 2-99 97-180 (272)
160 PF02527 GidB: rRNA small subu 98.3 1.4E-05 3E-10 57.6 10.1 87 2-98 60-146 (184)
161 PF05185 PRMT5: PRMT5 arginine 98.3 4.7E-06 1E-10 67.7 8.0 80 13-100 213-297 (448)
162 PRK10742 putative methyltransf 98.2 8.1E-06 1.8E-10 61.1 8.4 68 2-75 98-173 (250)
163 smart00138 MeTrc Methyltransfe 98.2 2E-06 4.3E-11 65.3 5.3 79 14-99 132-241 (264)
164 PLN02336 phosphoethanolamine N 98.2 1.1E-05 2.5E-10 65.9 10.1 89 2-101 49-143 (475)
165 PHA03412 putative methyltransf 98.2 2E-05 4.4E-10 58.6 10.3 76 13-102 75-165 (241)
166 TIGR03840 TMPT_Se_Te thiopurin 98.2 5.4E-06 1.2E-10 61.0 6.9 86 5-101 49-153 (213)
167 PRK11727 23S rRNA mA1618 methy 98.2 1E-05 2.2E-10 63.0 8.5 66 7-75 131-198 (321)
168 PRK07580 Mg-protoporphyrin IX 98.2 2E-05 4.4E-10 58.1 9.3 85 2-98 75-164 (230)
169 KOG1562 Spermidine synthase [A 98.1 7.7E-05 1.7E-09 56.9 11.8 122 14-154 145-281 (337)
170 COG1041 Predicted DNA modifica 98.1 1E-05 2.3E-10 63.0 7.2 91 1-99 206-309 (347)
171 PF02005 TRM: N2,N2-dimethylgu 98.1 2.7E-05 5.8E-10 62.0 9.6 90 2-98 61-152 (377)
172 KOG2899 Predicted methyltransf 98.1 6.1E-05 1.3E-09 56.0 10.5 96 2-103 70-212 (288)
173 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.1E-05 2.3E-10 63.8 7.0 84 2-86 206-299 (352)
174 PRK11188 rrmJ 23S rRNA methylt 98.1 1.9E-05 4.2E-10 57.9 7.9 85 2-99 63-164 (209)
175 KOG1270 Methyltransferases [Co 98.1 8.2E-06 1.8E-10 61.2 5.5 80 13-102 110-197 (282)
176 PF01861 DUF43: Protein of unk 98.1 7.9E-05 1.7E-09 55.4 10.6 81 8-95 61-143 (243)
177 COG2263 Predicted RNA methylas 98.1 4.7E-05 1E-09 54.6 9.0 67 11-89 65-136 (198)
178 PF04816 DUF633: Family of unk 98.0 5.8E-05 1.3E-09 55.2 9.3 89 3-98 10-99 (205)
179 PRK01544 bifunctional N5-gluta 98.0 6.3E-05 1.4E-09 62.1 10.5 92 2-99 359-461 (506)
180 KOG2915 tRNA(1-methyladenosine 98.0 2.5E-05 5.5E-10 58.9 6.9 89 2-97 118-206 (314)
181 PF10294 Methyltransf_16: Puta 98.0 5.2E-05 1.1E-09 54.0 8.3 93 2-99 57-155 (173)
182 PF04989 CmcI: Cephalosporin h 98.0 1.2E-05 2.6E-10 58.6 4.9 131 4-140 46-184 (206)
183 TIGR00438 rrmJ cell division p 97.9 4.8E-05 1E-09 54.7 7.3 83 4-99 46-145 (188)
184 KOG1709 Guanidinoacetate methy 97.9 5.6E-05 1.2E-09 55.3 7.5 96 1-104 112-210 (271)
185 PRK00050 16S rRNA m(4)C1402 me 97.9 5.3E-05 1.1E-09 58.4 7.5 65 5-75 34-99 (296)
186 KOG1661 Protein-L-isoaspartate 97.9 3.3E-05 7.2E-10 56.2 5.9 87 2-98 94-191 (237)
187 PF13489 Methyltransf_23: Meth 97.9 7.9E-05 1.7E-09 51.5 7.2 71 14-102 44-117 (161)
188 PRK13256 thiopurine S-methyltr 97.8 9E-05 1.9E-09 55.0 7.4 90 6-101 59-164 (226)
189 COG0116 Predicted N6-adenine-s 97.8 0.0001 2.2E-09 58.3 8.0 76 16-98 256-342 (381)
190 PF05724 TPMT: Thiopurine S-me 97.8 3.4E-05 7.4E-10 57.0 4.8 85 6-98 53-153 (218)
191 PRK05785 hypothetical protein; 97.8 0.00011 2.4E-09 54.6 7.2 76 2-94 63-141 (226)
192 PF00891 Methyltransf_2: O-met 97.8 2.7E-05 5.9E-10 58.1 4.0 84 2-103 112-202 (241)
193 COG0357 GidB Predicted S-adeno 97.8 0.00015 3.3E-09 53.3 7.7 87 2-98 79-166 (215)
194 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00011 2.4E-09 63.0 7.7 57 14-75 256-312 (702)
195 PLN02585 magnesium protoporphy 97.7 0.00035 7.6E-09 54.4 9.7 84 2-98 156-248 (315)
196 PF05711 TylF: Macrocin-O-meth 97.7 4.4E-05 9.5E-10 57.4 4.4 97 26-147 141-239 (248)
197 PRK06202 hypothetical protein; 97.7 0.00016 3.4E-09 53.7 7.1 87 2-101 72-167 (232)
198 PF08003 Methyltransf_9: Prote 97.7 0.00046 1E-08 53.1 9.0 90 9-106 133-225 (315)
199 COG4076 Predicted RNA methylas 97.7 6.3E-05 1.4E-09 54.0 3.9 79 13-101 53-136 (252)
200 TIGR00006 S-adenosyl-methyltra 97.6 0.00063 1.4E-08 52.7 9.2 67 5-75 35-101 (305)
201 PF12147 Methyltransf_20: Puta 97.6 0.00066 1.4E-08 51.9 8.9 87 15-105 162-254 (311)
202 COG3963 Phospholipid N-methylt 97.6 0.00076 1.6E-08 47.6 8.3 90 1-98 59-154 (194)
203 COG1867 TRM1 N2,N2-dimethylgua 97.6 0.00073 1.6E-08 53.2 9.1 85 6-98 68-152 (380)
204 PTZ00338 dimethyladenosine tra 97.6 0.00057 1.2E-08 52.7 8.4 64 2-76 48-111 (294)
205 KOG3191 Predicted N6-DNA-methy 97.5 0.0011 2.3E-08 47.5 8.4 90 2-101 55-169 (209)
206 KOG2187 tRNA uracil-5-methyltr 97.5 0.0003 6.6E-09 57.3 5.9 84 5-91 396-480 (534)
207 KOG3420 Predicted RNA methylas 97.5 0.00027 5.9E-09 48.8 4.8 74 9-91 65-144 (185)
208 COG2384 Predicted SAM-dependen 97.4 0.0016 3.5E-08 47.8 9.0 81 5-92 31-112 (226)
209 KOG1253 tRNA methyltransferase 97.4 0.0004 8.7E-09 56.4 6.1 93 2-98 121-214 (525)
210 PF01739 CheR: CheR methyltran 97.4 0.00032 6.9E-09 51.0 4.6 80 14-100 64-175 (196)
211 PF00107 ADH_zinc_N: Zinc-bind 97.4 0.0013 2.7E-08 44.0 7.2 89 2-102 3-91 (130)
212 KOG2352 Predicted spermine/spe 97.4 0.00035 7.7E-09 56.6 5.2 97 5-102 310-418 (482)
213 KOG1499 Protein arginine N-met 97.3 0.00061 1.3E-08 53.2 5.7 86 8-101 77-168 (346)
214 PF05430 Methyltransf_30: S-ad 97.3 0.00075 1.6E-08 45.5 5.5 51 42-98 32-88 (124)
215 KOG1541 Predicted protein carb 97.2 0.00038 8.3E-09 51.3 3.8 85 1-99 61-159 (270)
216 PRK13699 putative methylase; P 97.2 0.0006 1.3E-08 50.7 5.0 51 43-98 2-70 (227)
217 COG0275 Predicted S-adenosylme 97.2 0.0029 6.4E-08 48.6 8.7 70 2-75 36-105 (314)
218 TIGR02081 metW methionine bios 97.2 0.00073 1.6E-08 48.8 5.1 67 13-92 35-104 (194)
219 PRK14896 ksgA 16S ribosomal RN 97.2 0.0029 6.3E-08 47.8 8.5 60 2-75 41-100 (258)
220 PRK01747 mnmC bifunctional tRN 97.2 0.0033 7.1E-08 53.7 9.5 51 42-98 148-204 (662)
221 PF01795 Methyltransf_5: MraW 97.1 0.0008 1.7E-08 52.1 4.9 67 7-76 37-103 (310)
222 PF04445 SAM_MT: Putative SAM- 97.1 0.00042 9.2E-09 51.5 3.3 55 14-74 97-159 (234)
223 KOG1500 Protein arginine N-met 97.1 0.0016 3.5E-08 50.9 6.5 82 8-98 194-280 (517)
224 KOG3010 Methyltransferase [Gen 97.1 0.00045 9.7E-09 51.4 3.3 78 14-98 55-135 (261)
225 PRK11524 putative methyltransf 97.1 0.0014 2.9E-08 50.4 5.9 53 42-99 8-79 (284)
226 PRK10611 chemotaxis methyltran 97.1 0.00029 6.3E-09 54.1 2.1 81 14-100 147-262 (287)
227 TIGR01444 fkbM_fam methyltrans 97.1 0.0016 3.4E-08 44.4 5.5 50 2-52 10-59 (143)
228 KOG2361 Predicted methyltransf 97.1 0.0009 2E-08 49.8 4.4 89 8-101 89-184 (264)
229 PF07021 MetW: Methionine bios 97.0 0.0031 6.7E-08 45.5 6.5 77 11-101 33-112 (193)
230 PF05971 Methyltransf_10: Prot 96.9 0.0013 2.7E-08 50.8 4.4 65 8-75 120-186 (299)
231 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.0027 6E-08 49.1 5.9 81 13-98 76-181 (311)
232 COG1352 CheR Methylase of chem 96.8 0.0033 7.1E-08 47.9 5.7 79 14-99 129-240 (268)
233 COG4976 Predicted methyltransf 96.8 0.002 4.4E-08 47.8 4.2 75 14-99 147-224 (287)
234 TIGR00755 ksgA dimethyladenosi 96.8 0.011 2.4E-07 44.5 8.2 72 2-87 41-115 (253)
235 COG1063 Tdh Threonine dehydrog 96.7 0.007 1.5E-07 47.8 7.1 91 1-102 180-271 (350)
236 KOG3201 Uncharacterized conser 96.6 0.019 4.2E-07 40.5 7.9 120 1-145 41-165 (201)
237 PRK00274 ksgA 16S ribosomal RN 96.6 0.013 2.9E-07 44.6 7.7 73 2-87 54-126 (272)
238 KOG2198 tRNA cytosine-5-methyl 96.4 0.058 1.3E-06 42.7 10.2 88 14-103 183-299 (375)
239 KOG0820 Ribosomal RNA adenine 96.3 0.011 2.3E-07 45.1 5.5 62 2-74 70-131 (315)
240 PF01269 Fibrillarin: Fibrilla 96.0 0.069 1.5E-06 39.5 8.5 81 11-98 95-176 (229)
241 KOG1227 Putative methyltransfe 96.0 0.0059 1.3E-07 47.0 2.8 92 2-102 206-300 (351)
242 COG0030 KsgA Dimethyladenosine 95.9 0.068 1.5E-06 40.5 8.2 59 5-75 45-104 (259)
243 PF04378 RsmJ: Ribosomal RNA s 95.9 0.058 1.3E-06 40.6 7.8 89 4-98 68-162 (245)
244 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.32 7E-06 34.9 11.4 91 1-103 11-123 (185)
245 KOG0024 Sorbitol dehydrogenase 95.8 0.079 1.7E-06 41.4 8.3 91 2-100 182-273 (354)
246 PF03291 Pox_MCEL: mRNA cappin 95.8 0.025 5.4E-07 44.5 5.7 85 13-99 84-185 (331)
247 PF08123 DOT1: Histone methyla 95.7 0.12 2.7E-06 37.8 8.5 81 13-99 65-157 (205)
248 COG1064 AdhP Zn-dependent alco 95.6 0.064 1.4E-06 42.2 7.3 83 2-102 179-261 (339)
249 COG3510 CmcI Cephalosporin hyd 95.5 0.35 7.6E-06 35.2 10.1 116 4-137 83-211 (237)
250 PRK04148 hypothetical protein; 95.5 0.092 2E-06 35.9 6.9 63 13-89 38-100 (134)
251 PRK09880 L-idonate 5-dehydroge 95.3 0.094 2E-06 41.0 7.4 85 2-100 182-266 (343)
252 KOG0822 Protein kinase inhibit 95.3 0.013 2.9E-07 48.3 2.7 79 13-99 394-477 (649)
253 COG1568 Predicted methyltransf 95.2 0.087 1.9E-06 40.4 6.5 62 8-75 169-230 (354)
254 TIGR02987 met_A_Alw26 type II 95.1 0.068 1.5E-06 44.5 6.3 58 15-75 64-121 (524)
255 KOG3178 Hydroxyindole-O-methyl 95.1 0.097 2.1E-06 41.1 6.6 80 8-104 195-280 (342)
256 PF01728 FtsJ: FtsJ-like methy 95.1 0.035 7.5E-07 39.5 4.0 82 5-100 38-139 (181)
257 KOG1975 mRNA cap methyltransfe 95.0 0.094 2E-06 41.0 6.3 83 14-98 140-235 (389)
258 KOG0022 Alcohol dehydrogenase, 94.9 0.22 4.8E-06 38.9 8.1 86 2-99 205-293 (375)
259 PF06080 DUF938: Protein of un 94.9 0.11 2.3E-06 38.1 6.0 101 2-102 37-143 (204)
260 COG1062 AdhC Zn-dependent alco 94.8 0.29 6.2E-06 38.6 8.4 86 2-99 198-284 (366)
261 cd08281 liver_ADH_like1 Zinc-d 94.8 0.19 4.1E-06 39.7 7.7 85 2-99 204-289 (371)
262 KOG1269 SAM-dependent methyltr 94.7 0.047 1E-06 43.5 4.0 84 11-101 130-216 (364)
263 PF05148 Methyltransf_8: Hypot 94.6 0.076 1.6E-06 39.0 4.7 99 2-142 80-181 (219)
264 COG0293 FtsJ 23S rRNA methylas 94.3 0.79 1.7E-05 33.6 9.4 73 13-101 69-160 (205)
265 COG1889 NOP1 Fibrillarin-like 94.3 0.58 1.3E-05 34.4 8.5 84 8-98 94-178 (231)
266 PRK10309 galactitol-1-phosphat 94.2 0.36 7.9E-06 37.6 8.2 88 2-100 173-260 (347)
267 cd08237 ribitol-5-phosphate_DH 94.2 0.29 6.2E-06 38.3 7.6 80 2-100 176-256 (341)
268 PF07942 N2227: N2227-like pro 94.1 0.032 7E-07 42.6 2.0 56 42-102 145-204 (270)
269 PF05219 DREV: DREV methyltran 94.1 1.9 4.2E-05 32.8 11.4 117 4-141 108-235 (265)
270 COG1004 Ugd Predicted UDP-gluc 94.1 2.2 4.7E-05 34.5 12.0 89 2-102 12-122 (414)
271 PF11899 DUF3419: Protein of u 93.9 0.22 4.7E-06 40.0 6.3 60 38-103 273-337 (380)
272 PF06859 Bin3: Bicoid-interact 93.7 0.027 5.9E-07 37.0 0.8 38 66-103 1-47 (110)
273 PF02153 PDH: Prephenate dehyd 93.7 0.32 7E-06 36.7 6.7 72 8-97 5-76 (258)
274 TIGR03439 methyl_EasF probable 93.5 1.4 3E-05 34.5 10.1 84 13-98 103-195 (319)
275 PF00398 RrnaAD: Ribosomal RNA 93.5 0.14 3E-06 38.8 4.4 90 1-99 41-133 (262)
276 TIGR03451 mycoS_dep_FDH mycoth 93.4 0.82 1.8E-05 35.9 8.8 88 2-100 189-276 (358)
277 COG0677 WecC UDP-N-acetyl-D-ma 93.2 3.3 7.2E-05 33.5 11.8 96 1-105 20-133 (436)
278 PF00072 Response_reg: Respons 93.1 1.4 3E-05 27.8 9.9 74 17-98 1-76 (112)
279 KOG2671 Putative RNA methylase 93.0 0.093 2E-06 41.4 2.9 86 7-98 223-352 (421)
280 COG0500 SmtA SAM-dependent met 93.0 1.2 2.7E-05 28.9 8.2 81 15-102 73-157 (257)
281 PHA01634 hypothetical protein 92.8 0.27 5.8E-06 33.4 4.5 62 2-75 40-101 (156)
282 cd08239 THR_DH_like L-threonin 92.8 0.85 1.8E-05 35.3 8.1 84 2-98 176-260 (339)
283 TIGR03366 HpnZ_proposed putati 92.8 1.1 2.4E-05 33.9 8.5 86 2-100 133-218 (280)
284 cd08293 PTGR2 Prostaglandin re 92.7 1.1 2.3E-05 34.8 8.6 82 4-98 170-252 (345)
285 PRK11064 wecC UDP-N-acetyl-D-m 92.7 3.7 8.1E-05 33.3 11.8 92 1-101 14-120 (415)
286 COG2961 ComJ Protein involved 92.7 0.93 2E-05 34.3 7.5 71 11-87 107-180 (279)
287 PF10354 DUF2431: Domain of un 92.5 0.43 9.4E-06 33.7 5.5 88 8-99 14-124 (166)
288 COG2130 Putative NADP-dependen 92.5 1.3 2.9E-05 34.5 8.4 87 4-102 165-251 (340)
289 cd08285 NADP_ADH NADP(H)-depen 92.5 1.2 2.6E-05 34.7 8.6 88 2-100 179-266 (351)
290 KOG0781 Signal recognition par 92.5 1.5 3.2E-05 36.3 9.0 104 14-137 408-527 (587)
291 PLN02827 Alcohol dehydrogenase 92.3 1 2.2E-05 35.8 8.1 86 2-99 206-294 (378)
292 PLN02740 Alcohol dehydrogenase 92.3 1.2 2.7E-05 35.3 8.6 86 2-99 211-299 (381)
293 PLN03154 putative allyl alcoho 92.3 1.6 3.4E-05 34.3 9.0 85 2-99 172-257 (348)
294 KOG3115 Methyltransferase-like 92.1 0.76 1.7E-05 33.8 6.3 87 8-98 78-181 (249)
295 PF04672 Methyltransf_19: S-ad 92.0 1.5 3.3E-05 33.4 8.3 91 11-102 92-192 (267)
296 KOG1596 Fibrillarin and relate 92.0 1.4 3E-05 33.4 7.7 124 12-153 179-306 (317)
297 COG4798 Predicted methyltransf 91.7 0.31 6.7E-06 35.6 4.0 91 2-100 60-166 (238)
298 cd08300 alcohol_DH_class_III c 91.7 1.9 4E-05 34.0 8.8 86 2-99 199-287 (368)
299 PLN02353 probable UDP-glucose 91.7 1.9 4.1E-05 35.7 9.0 32 1-32 12-44 (473)
300 TIGR03201 dearomat_had 6-hydro 91.5 1.1 2.3E-05 35.1 7.3 88 2-100 179-272 (349)
301 cd08254 hydroxyacyl_CoA_DH 6-h 91.5 1.4 3.1E-05 33.7 8.0 82 5-99 181-262 (338)
302 PF09243 Rsm22: Mitochondrial 91.4 1.4 3.1E-05 33.6 7.7 36 2-37 43-81 (274)
303 cd08286 FDH_like_ADH2 formalde 91.4 2.2 4.8E-05 33.0 8.9 84 4-98 181-264 (345)
304 PF03141 Methyltransf_29: Puta 91.3 0.31 6.6E-06 40.3 4.1 70 64-155 425-506 (506)
305 PF07091 FmrO: Ribosomal RNA m 91.2 0.73 1.6E-05 34.8 5.7 62 2-73 115-178 (251)
306 PTZ00357 methyltransferase; Pr 91.2 0.43 9.2E-06 41.2 4.8 83 13-95 727-830 (1072)
307 TIGR02825 B4_12hDH leukotriene 91.1 2.8 6.1E-05 32.2 9.2 82 4-99 154-236 (325)
308 cd08233 butanediol_DH_like (2R 91.0 2.2 4.7E-05 33.3 8.6 85 3-99 186-271 (351)
309 PRK09424 pntA NAD(P) transhydr 91.0 2.2 4.7E-05 35.7 8.8 91 2-101 177-286 (509)
310 cd08238 sorbose_phosphate_red 91.0 1.3 2.8E-05 35.6 7.4 88 2-98 189-286 (410)
311 PRK09422 ethanol-active dehydr 90.9 1.9 4.2E-05 33.2 8.2 84 2-98 175-259 (338)
312 TIGR02818 adh_III_F_hyde S-(hy 90.9 2.2 4.7E-05 33.7 8.5 86 2-99 198-286 (368)
313 COG1189 Predicted rRNA methyla 90.9 5.1 0.00011 30.2 9.7 79 9-98 97-176 (245)
314 KOG2912 Predicted DNA methylas 90.8 0.44 9.6E-06 37.3 4.3 74 1-75 111-187 (419)
315 PF07015 VirC1: VirC1 protein; 90.8 1.3 2.8E-05 33.1 6.6 72 2-74 14-91 (231)
316 PF14740 DUF4471: Domain of un 90.7 1 2.2E-05 34.8 6.2 55 42-102 201-256 (289)
317 PF13679 Methyltransf_32: Meth 90.6 0.92 2E-05 30.9 5.4 42 12-53 51-94 (141)
318 cd08291 ETR_like_1 2-enoyl thi 90.5 2.4 5.2E-05 32.6 8.3 82 5-99 160-241 (324)
319 TIGR00478 tly hemolysin TlyA f 90.3 0.82 1.8E-05 34.1 5.3 80 2-98 87-169 (228)
320 PRK05808 3-hydroxybutyryl-CoA 90.3 3.7 8E-05 31.2 9.1 86 1-99 14-117 (282)
321 cd08283 FDH_like_1 Glutathione 90.1 2.1 4.5E-05 34.1 7.8 90 2-99 197-305 (386)
322 cd05279 Zn_ADH1 Liver alcohol 89.8 3 6.5E-05 32.8 8.5 85 2-98 196-283 (365)
323 KOG2360 Proliferation-associat 89.8 0.37 8E-06 38.5 3.2 69 2-76 225-294 (413)
324 cd08294 leukotriene_B4_DH_like 89.7 4.1 8.9E-05 31.1 9.1 77 8-98 163-239 (329)
325 PF02254 TrkA_N: TrkA-N domain 89.7 2.8 6.1E-05 27.0 7.0 74 13-99 20-95 (116)
326 KOG0780 Signal recognition par 89.6 10 0.00022 30.9 11.6 81 15-100 132-222 (483)
327 PRK15057 UDP-glucose 6-dehydro 89.5 3 6.6E-05 33.6 8.3 30 1-32 11-40 (388)
328 PF08351 DUF1726: Domain of un 89.4 0.54 1.2E-05 29.9 3.2 76 64-140 9-89 (92)
329 PRK11524 putative methyltransf 89.3 0.65 1.4E-05 35.6 4.2 36 1-36 217-252 (284)
330 COG0286 HsdM Type I restrictio 89.2 3.9 8.5E-05 34.0 8.9 90 14-105 214-334 (489)
331 KOG1099 SAM-dependent methyltr 89.0 2.5 5.3E-05 31.8 6.8 67 16-99 76-162 (294)
332 KOG2078 tRNA modification enzy 89.0 0.48 1E-05 38.5 3.4 46 10-55 267-313 (495)
333 PF03269 DUF268: Caenorhabditi 88.9 1.9 4.1E-05 30.5 5.9 80 8-101 18-112 (177)
334 cd08301 alcohol_DH_plants Plan 88.8 4.1 8.9E-05 32.0 8.6 87 2-100 200-289 (369)
335 KOG2798 Putative trehalase [Ca 88.6 0.26 5.6E-06 38.5 1.6 56 42-102 239-298 (369)
336 cd05188 MDR Medium chain reduc 88.4 4.3 9.4E-05 29.7 8.1 85 2-99 147-231 (271)
337 COG0686 Ald Alanine dehydrogen 88.2 9.1 0.0002 30.2 9.6 81 13-105 190-273 (371)
338 cd08277 liver_alcohol_DH_like 88.1 5.4 0.00012 31.4 8.8 86 2-99 197-285 (365)
339 TIGR01202 bchC 2-desacetyl-2-h 88.0 1.7 3.7E-05 33.5 5.8 74 2-99 157-230 (308)
340 PF10237 N6-adenineMlase: Prob 88.0 4.9 0.00011 28.3 7.6 34 64-98 84-121 (162)
341 cd08295 double_bond_reductase_ 88.0 6.5 0.00014 30.4 9.1 79 7-98 170-249 (338)
342 cd05278 FDH_like Formaldehyde 87.9 4.5 9.8E-05 31.2 8.2 80 8-98 186-265 (347)
343 KOG1501 Arginine N-methyltrans 87.9 1.2 2.7E-05 36.5 5.0 45 8-52 82-127 (636)
344 COG0604 Qor NADPH:quinone redu 87.4 6.5 0.00014 30.8 8.8 79 8-99 162-240 (326)
345 cd08230 glucose_DH Glucose deh 87.3 3.2 7E-05 32.4 7.1 82 2-100 185-269 (355)
346 PRK10840 transcriptional regul 87.2 9 0.0002 27.5 10.3 79 14-98 3-86 (216)
347 PF05050 Methyltransf_21: Meth 87.2 1.4 3E-05 30.2 4.5 28 11-38 20-49 (167)
348 TIGR02819 fdhA_non_GSH formald 87.2 5.2 0.00011 32.1 8.3 91 2-101 198-300 (393)
349 COG3897 Predicted methyltransf 87.1 1.3 2.8E-05 32.4 4.3 75 11-98 99-176 (218)
350 KOG3045 Predicted RNA methylas 86.9 0.87 1.9E-05 34.8 3.4 52 44-102 213-266 (325)
351 PRK08293 3-hydroxybutyryl-CoA 86.7 5.2 0.00011 30.6 7.8 86 1-98 14-118 (287)
352 PRK11760 putative 23S rRNA C24 86.7 1.2 2.7E-05 35.3 4.3 74 2-93 223-296 (357)
353 PF02737 3HCDH_N: 3-hydroxyacy 86.5 2.1 4.5E-05 30.6 5.1 88 1-101 10-115 (180)
354 PRK09028 cystathionine beta-ly 86.3 12 0.00026 30.2 9.9 100 4-110 90-193 (394)
355 PRK13699 putative methylase; P 85.7 1.6 3.5E-05 32.4 4.4 37 1-37 172-208 (227)
356 KOG2940 Predicted methyltransf 85.2 1.2 2.5E-05 33.6 3.3 77 13-99 94-173 (325)
357 PRK08114 cystathionine beta-ly 84.7 11 0.00023 30.6 8.9 99 4-110 91-196 (395)
358 TIGR00561 pntA NAD(P) transhyd 84.7 6.1 0.00013 33.1 7.7 88 2-98 176-282 (511)
359 cd08265 Zn_ADH3 Alcohol dehydr 84.5 9.3 0.0002 30.3 8.5 87 2-98 216-305 (384)
360 PF01053 Cys_Met_Meta_PP: Cys/ 84.2 11 0.00025 30.3 8.8 93 6-105 86-183 (386)
361 TIGR02822 adh_fam_2 zinc-bindi 84.0 6.7 0.00014 30.5 7.4 73 6-100 182-254 (329)
362 TIGR00692 tdh L-threonine 3-de 83.8 12 0.00025 29.0 8.7 80 8-99 180-260 (340)
363 cd08263 Zn_ADH10 Alcohol dehyd 83.7 9.4 0.0002 30.0 8.2 84 4-98 202-285 (367)
364 cd08278 benzyl_alcohol_DH Benz 83.6 8.7 0.00019 30.2 7.9 85 2-98 199-283 (365)
365 PRK05396 tdh L-threonine 3-deh 83.5 9.6 0.00021 29.4 8.1 87 2-99 176-262 (341)
366 KOG2456 Aldehyde dehydrogenase 83.4 4.8 0.0001 32.7 6.2 67 20-92 140-206 (477)
367 PF01234 NNMT_PNMT_TEMT: NNMT/ 83.1 1.2 2.5E-05 33.9 2.7 89 14-103 79-202 (256)
368 COG0745 OmpR Response regulato 83.1 17 0.00036 27.0 9.2 65 16-89 2-68 (229)
369 cd00401 AdoHcyase S-adenosyl-L 82.8 11 0.00023 30.8 8.2 74 2-99 214-288 (413)
370 cd05288 PGDH Prostaglandin deh 82.2 14 0.00031 28.1 8.5 82 4-98 161-242 (329)
371 cd05284 arabinose_DH_like D-ar 82.2 12 0.00025 28.8 8.1 83 4-98 182-264 (340)
372 PLN02586 probable cinnamyl alc 82.1 12 0.00027 29.4 8.2 81 2-99 196-277 (360)
373 TIGR00518 alaDH alanine dehydr 81.7 9.8 0.00021 30.4 7.6 84 2-98 179-265 (370)
374 PRK07502 cyclohexadienyl dehyd 81.5 8.5 0.00018 29.7 7.0 66 15-97 32-97 (307)
375 COG5379 BtaA S-adenosylmethion 81.4 6.6 0.00014 30.7 6.1 75 17-102 289-368 (414)
376 cd08231 MDR_TM0436_like Hypoth 81.3 14 0.0003 28.9 8.3 85 2-98 190-278 (361)
377 PTZ00354 alcohol dehydrogenase 81.2 17 0.00038 27.6 8.7 83 3-98 155-238 (334)
378 cd05285 sorbitol_DH Sorbitol d 81.2 13 0.00028 28.8 8.0 83 4-98 177-263 (343)
379 cd08276 MDR7 Medium chain dehy 81.1 14 0.0003 28.1 8.1 84 2-98 173-257 (336)
380 PF03807 F420_oxidored: NADP o 81.0 7.7 0.00017 24.0 5.6 67 14-98 25-92 (96)
381 cd05281 TDH Threonine dehydrog 80.9 15 0.00033 28.4 8.3 82 4-98 178-260 (341)
382 PRK05967 cystathionine beta-ly 80.6 27 0.00058 28.3 9.7 93 4-103 93-189 (395)
383 cd08297 CAD3 Cinnamyl alcohol 80.6 16 0.00035 28.1 8.4 82 5-98 182-263 (341)
384 cd08240 6_hydroxyhexanoate_dh_ 80.6 14 0.0003 28.6 8.1 79 7-98 193-272 (350)
385 COG5459 Predicted rRNA methyla 80.6 2.2 4.9E-05 34.1 3.5 93 2-99 123-224 (484)
386 TIGR02817 adh_fam_1 zinc-bindi 80.6 12 0.00025 28.7 7.6 78 8-98 168-245 (336)
387 TIGR00027 mthyl_TIGR00027 meth 80.5 23 0.00049 26.9 9.7 100 2-102 91-199 (260)
388 PRK07417 arogenate dehydrogena 80.3 8.6 0.00019 29.3 6.6 66 13-96 22-87 (279)
389 cd00315 Cyt_C5_DNA_methylase C 80.3 2.1 4.6E-05 32.6 3.3 50 14-75 22-71 (275)
390 cd08244 MDR_enoyl_red Possible 79.9 20 0.00043 27.1 8.6 83 3-98 157-239 (324)
391 cd08261 Zn_ADH7 Alcohol dehydr 79.9 16 0.00035 28.1 8.2 79 8-98 178-256 (337)
392 PRK13435 response regulator; P 79.7 14 0.00029 24.5 6.9 55 14-75 5-59 (145)
393 PRK09260 3-hydroxybutyryl-CoA 79.6 9.8 0.00021 29.0 6.8 87 1-99 12-116 (288)
394 cd08260 Zn_ADH6 Alcohol dehydr 79.5 17 0.00037 28.0 8.2 81 5-98 181-262 (345)
395 KOG1197 Predicted quinone oxid 79.2 21 0.00044 27.6 8.0 74 13-98 170-243 (336)
396 PTZ00142 6-phosphogluconate de 78.8 16 0.00036 30.2 8.1 21 13-33 23-43 (470)
397 KOG0519 Sensory transduction h 78.7 6.7 0.00015 34.7 6.2 60 13-79 665-724 (786)
398 cd08296 CAD_like Cinnamyl alco 78.7 18 0.00038 27.9 8.0 82 2-98 176-257 (333)
399 PRK06035 3-hydroxyacyl-CoA deh 78.4 16 0.00035 27.9 7.7 85 1-98 14-119 (291)
400 PF01210 NAD_Gly3P_dh_N: NAD-d 78.3 17 0.00038 25.0 7.2 75 13-98 21-101 (157)
401 cd05286 QOR2 Quinone oxidoredu 78.1 21 0.00045 26.6 8.2 82 4-98 152-233 (320)
402 PRK06130 3-hydroxybutyryl-CoA 77.5 23 0.0005 27.2 8.3 75 13-98 26-113 (311)
403 cd08232 idonate-5-DH L-idonate 77.4 14 0.0003 28.4 7.1 79 5-98 181-260 (339)
404 cd02037 MRP-like MRP (Multiple 77.3 18 0.00038 25.1 7.1 73 13-99 27-99 (169)
405 KOG0053 Cystathionine beta-lya 76.9 39 0.00085 27.6 10.4 88 11-105 113-204 (409)
406 PRK10083 putative oxidoreducta 76.8 18 0.00038 27.9 7.6 82 4-98 175-257 (339)
407 TIGR00745 apbA_panE 2-dehydrop 76.8 7.8 0.00017 29.3 5.5 34 65-98 58-91 (293)
408 COG3129 Predicted SAM-dependen 76.4 5.1 0.00011 30.3 4.1 61 14-77 102-164 (292)
409 PRK15182 Vi polysaccharide bio 76.0 33 0.00072 28.0 9.1 29 1-31 17-45 (425)
410 cd08243 quinone_oxidoreductase 76.0 31 0.00067 25.9 8.8 79 4-98 158-236 (320)
411 cd08253 zeta_crystallin Zeta-c 75.9 30 0.00066 25.8 8.8 84 2-98 158-241 (325)
412 cd08266 Zn_ADH_like1 Alcohol d 75.8 25 0.00055 26.6 8.2 74 13-98 190-263 (342)
413 PF01555 N6_N4_Mtase: DNA meth 75.8 3.1 6.7E-05 29.9 2.9 20 80-99 36-55 (231)
414 PRK14620 NAD(P)H-dependent gly 75.6 19 0.0004 28.0 7.4 75 14-98 23-104 (326)
415 PRK08269 3-hydroxybutyryl-CoA 75.5 24 0.00052 27.5 7.9 87 1-98 1-113 (314)
416 TIGR00872 gnd_rel 6-phosphoglu 75.1 19 0.00041 27.7 7.2 68 13-96 22-89 (298)
417 PRK07066 3-hydroxybutyryl-CoA 75.0 22 0.00048 27.9 7.6 88 1-100 18-119 (321)
418 PLN02178 cinnamyl-alcohol dehy 75.0 35 0.00075 27.1 8.9 82 2-100 191-273 (375)
419 cd08256 Zn_ADH2 Alcohol dehydr 74.9 25 0.00053 27.3 8.0 86 3-99 188-273 (350)
420 KOG2352 Predicted spermine/spe 74.9 12 0.00027 31.0 6.3 91 2-101 58-162 (482)
421 cd08287 FDH_like_ADH3 formalde 74.5 32 0.00069 26.5 8.5 86 3-99 182-267 (345)
422 cd08251 polyketide_synthase po 74.4 32 0.00069 25.5 8.3 79 7-98 139-217 (303)
423 COG0270 Dcm Site-specific DNA 74.2 12 0.00025 29.4 5.9 75 15-102 26-118 (328)
424 COG0287 TyrA Prephenate dehydr 74.1 14 0.00029 28.5 6.1 30 2-31 15-45 (279)
425 PRK11697 putative two-componen 73.9 21 0.00046 25.8 7.0 56 16-77 3-58 (238)
426 COG1748 LYS9 Saccharopine dehy 73.9 16 0.00035 29.6 6.6 60 5-75 16-77 (389)
427 PRK07530 3-hydroxybutyryl-CoA 73.8 25 0.00055 26.8 7.6 86 1-99 15-118 (292)
428 PRK00094 gpsA NAD(P)H-dependen 73.8 24 0.00052 27.1 7.6 75 13-98 23-103 (325)
429 PRK11466 hybrid sensory histid 73.8 51 0.0011 29.3 10.4 69 13-88 680-750 (914)
430 PRK12921 2-dehydropantoate 2-r 73.7 10 0.00023 28.9 5.5 34 65-98 67-100 (305)
431 TIGR01324 cysta_beta_ly_B cyst 73.5 45 0.00098 26.7 9.9 90 11-107 86-179 (377)
432 cd08279 Zn_ADH_class_III Class 72.5 27 0.00059 27.3 7.7 82 5-98 198-280 (363)
433 cd08292 ETR_like_2 2-enoyl thi 72.5 27 0.00057 26.5 7.5 82 4-98 155-236 (324)
434 PRK09935 transcriptional regul 72.2 30 0.00065 24.0 10.6 70 13-88 2-73 (210)
435 PRK10754 quinone oxidoreductas 72.1 41 0.0009 25.6 9.0 80 6-98 158-237 (327)
436 PRK09958 DNA-binding transcrip 72.0 30 0.00066 24.0 9.9 66 16-88 2-69 (204)
437 PRK05476 S-adenosyl-L-homocyst 71.9 54 0.0012 26.9 9.9 72 4-99 226-298 (425)
438 PLN02545 3-hydroxybutyryl-CoA 71.8 11 0.00024 28.8 5.2 75 13-99 26-118 (295)
439 cd08249 enoyl_reductase_like e 71.8 21 0.00046 27.6 6.9 81 4-98 170-252 (339)
440 PLN02514 cinnamyl-alcohol dehy 71.7 46 0.001 26.0 9.0 83 2-100 193-275 (357)
441 PRK08324 short chain dehydroge 71.4 51 0.0011 28.6 9.6 57 13-75 445-507 (681)
442 cd08241 QOR1 Quinone oxidoredu 70.8 41 0.0009 25.1 8.9 82 4-98 155-236 (323)
443 cd08255 2-desacetyl-2-hydroxye 70.7 26 0.00055 26.0 7.0 78 2-98 110-188 (277)
444 PRK10529 DNA-binding transcrip 70.6 35 0.00076 24.2 7.5 65 15-87 2-68 (225)
445 COG0626 MetC Cystathionine bet 70.5 50 0.0011 26.9 8.8 98 4-108 92-194 (396)
446 cd05276 p53_inducible_oxidored 70.3 41 0.00089 25.0 8.1 81 5-98 156-236 (323)
447 cd05213 NAD_bind_Glutamyl_tRNA 70.1 35 0.00076 26.5 7.7 73 13-102 201-274 (311)
448 cd08258 Zn_ADH4 Alcohol dehydr 70.1 44 0.00095 25.5 8.2 32 64-98 231-262 (306)
449 cd08282 PFDH_like Pseudomonas 70.0 52 0.0011 25.9 9.1 90 2-101 189-286 (375)
450 cd08252 AL_MDR Arginate lyase 69.7 38 0.00082 25.9 7.9 81 5-98 166-246 (336)
451 TIGR03026 NDP-sugDHase nucleot 69.3 59 0.0013 26.2 9.9 30 1-31 11-40 (411)
452 PRK10955 DNA-binding transcrip 69.3 38 0.00082 24.0 7.4 52 16-76 3-54 (232)
453 smart00829 PKS_ER Enoylreducta 69.0 42 0.00092 24.5 8.7 81 5-98 121-203 (288)
454 cd08290 ETR 2-enoyl thioester 69.0 50 0.0011 25.3 8.5 29 66-98 221-249 (341)
455 COG0541 Ffh Signal recognition 68.9 65 0.0014 26.6 11.5 84 13-101 129-222 (451)
456 cd08250 Mgc45594_like Mgc45594 68.8 49 0.0011 25.2 8.4 77 8-98 159-235 (329)
457 PRK06522 2-dehydropantoate 2-r 68.7 33 0.00072 26.0 7.3 74 13-98 22-98 (304)
458 PRK10161 transcriptional regul 68.6 40 0.00086 24.0 7.5 54 15-76 3-56 (229)
459 PRK10360 DNA-binding transcrip 68.3 36 0.00079 23.4 8.2 55 16-76 3-57 (196)
460 cd08268 MDR2 Medium chain dehy 68.2 48 0.001 24.8 8.4 74 13-98 168-241 (328)
461 CHL00148 orf27 Ycf27; Reviewed 68.2 41 0.00089 24.0 8.0 68 13-88 5-74 (240)
462 PRK15411 rcsA colanic acid cap 67.9 44 0.00095 24.2 9.9 77 16-98 2-83 (207)
463 KOG4058 Uncharacterized conser 67.7 17 0.00037 25.6 4.8 75 15-98 96-170 (199)
464 TIGR02956 TMAO_torS TMAO reduc 67.6 27 0.00058 31.2 7.4 58 13-78 701-758 (968)
465 cd08284 FDH_like_2 Glutathione 67.6 54 0.0012 25.2 9.3 81 5-98 183-264 (344)
466 TIGR02875 spore_0_A sporulatio 67.1 46 0.001 24.6 7.7 68 14-87 2-71 (262)
467 TIGR02824 quinone_pig3 putativ 66.9 51 0.0011 24.6 8.3 74 13-98 163-236 (325)
468 PLN02494 adenosylhomocysteinas 66.6 47 0.001 27.7 8.0 75 2-99 266-340 (477)
469 PRK11091 aerobic respiration c 66.4 32 0.00069 30.0 7.5 67 13-87 524-592 (779)
470 PF02558 ApbA: Ketopantoate re 65.8 10 0.00023 25.6 3.6 35 64-98 65-99 (151)
471 cd05282 ETR_like 2-enoyl thioe 65.6 53 0.0011 24.8 7.9 73 14-98 163-235 (323)
472 PRK09468 ompR osmolarity respo 65.6 48 0.001 23.8 10.6 67 13-87 4-72 (239)
473 cd08236 sugar_DH NAD(P)-depend 65.5 55 0.0012 25.1 8.0 78 8-98 178-256 (343)
474 cd05283 CAD1 Cinnamyl alcohol 65.5 34 0.00074 26.4 6.9 80 2-98 182-261 (337)
475 KOG2539 Mitochondrial/chloropl 65.2 22 0.00048 29.5 5.8 81 13-98 225-313 (491)
476 PRK13849 putative crown gall t 64.8 55 0.0012 24.3 7.7 15 13-27 29-43 (231)
477 PRK08655 prephenate dehydrogen 64.7 41 0.00089 27.6 7.4 67 13-97 23-89 (437)
478 PLN02702 L-idonate 5-dehydroge 64.7 66 0.0014 25.1 8.9 87 3-98 195-283 (364)
479 PRK05703 flhF flagellar biosyn 64.7 77 0.0017 25.9 11.8 56 13-75 250-308 (424)
480 cd08289 MDR_yhfp_like Yhfp put 64.2 61 0.0013 24.6 8.2 77 8-99 166-242 (326)
481 PRK10046 dpiA two-component re 64.1 53 0.0011 23.8 10.4 78 14-98 4-84 (225)
482 PRK13856 two-component respons 63.9 53 0.0011 23.8 7.6 53 16-76 3-55 (241)
483 PRK05708 2-dehydropantoate 2-r 63.9 15 0.00033 28.3 4.6 37 65-101 69-106 (305)
484 TIGR02154 PhoB phosphate regul 63.7 48 0.001 23.2 7.8 55 15-77 3-57 (226)
485 PRK15001 SAM-dependent 23S rib 63.6 49 0.0011 26.7 7.5 61 28-99 78-141 (378)
486 PHA02518 ParA-like protein; Pr 63.4 38 0.00083 24.0 6.4 57 13-76 28-86 (211)
487 cd08269 Zn_ADH9 Alcohol dehydr 62.9 62 0.0014 24.2 7.9 79 8-98 148-227 (312)
488 PF01408 GFO_IDH_MocA: Oxidore 62.8 37 0.00081 21.7 7.8 71 13-102 24-95 (120)
489 PRK03659 glutathione-regulated 62.8 40 0.00088 28.8 7.3 73 13-98 422-496 (601)
490 TIGR00064 ftsY signal recognit 62.7 67 0.0015 24.5 10.0 56 13-77 99-165 (272)
491 cd08235 iditol_2_DH_like L-idi 62.2 69 0.0015 24.5 8.3 79 8-98 184-263 (343)
492 PRK08507 prephenate dehydrogen 62.0 39 0.00084 25.6 6.5 63 15-97 26-88 (275)
493 PRK13771 putative alcohol dehy 62.0 56 0.0012 24.9 7.5 78 2-98 176-253 (334)
494 PLN02256 arogenate dehydrogena 61.7 66 0.0014 25.0 7.7 64 14-96 59-123 (304)
495 cd05565 PTS_IIB_lactose PTS_II 61.6 40 0.00088 21.6 6.5 59 26-96 16-74 (99)
496 PRK15347 two component system 61.5 41 0.0009 29.8 7.4 65 15-87 691-757 (921)
497 cd05195 enoyl_red enoyl reduct 61.4 61 0.0013 23.6 7.8 82 5-98 125-207 (293)
498 PF11599 AviRa: RRNA methyltra 61.3 11 0.00023 28.2 3.1 24 13-36 76-99 (246)
499 TIGR00959 ffh signal recogniti 61.2 92 0.002 25.6 11.6 81 14-100 128-221 (428)
500 COG4121 Uncharacterized conser 61.2 11 0.00024 28.6 3.2 55 42-99 147-207 (252)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=2.7e-35 Score=214.39 Aligned_cols=149 Identities=37% Similarity=0.649 Sum_probs=131.2
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|+||+++|.+.| +++|+++|++|+.++.|+++++++|+.++|+++.||+.+.++++... .+.++||+||+|+++..|
T Consensus 56 ~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~-~~~~~fD~VFiDa~K~~y 134 (205)
T PF01596_consen 56 TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND-GEEGQFDFVFIDADKRNY 134 (205)
T ss_dssp TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT-TTTTSEEEEEEESTGGGH
T ss_pred cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc-cCCCceeEEEEcccccch
Confidence 5999999999775 79999999999999999999999999999999999999999987531 012579999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+|+.+.++|+|||+|++||++|+|.+..|... ......+++|++.+.+||+|+++++|+|||+.|++|+
T Consensus 135 ~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~------~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 135 LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDE------DPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGG------SHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred hhHHHHHhhhccCCeEEEEccccccceecCccch------hhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence 9999999999999999999999999999887421 1145569999999999999999999999999999996
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=6e-34 Score=212.31 Aligned_cols=156 Identities=49% Similarity=0.852 Sum_probs=133.8
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
+|+||+++|.+. ++++|+++|.+++.++.|+++++++|+.++|+++.|++.+.++++.......++||+||+|+++..|
T Consensus 90 ~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y 169 (247)
T PLN02589 90 TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNY 169 (247)
T ss_pred hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHh
Confidence 599999999876 5899999999999999999999999999999999999999999874210002589999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+|+.+.++|+|||+|++||++|+|.+..|....++.....+.+.+++|++.+.++|++.++++|+|||+.+++|+
T Consensus 170 ~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 170 INYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence 99999999999999999999999999998875322211111133468999999999999999999999999999986
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=208.17 Aligned_cols=147 Identities=37% Similarity=0.590 Sum_probs=133.3
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
.|+||++||...| ++++++||++|++++.|++|+++.|+.++|+++. +|+.+.+.... .++||+||+|++|..
T Consensus 70 ~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~-----~~~fDliFIDadK~~ 144 (219)
T COG4122 70 IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDADKAD 144 (219)
T ss_pred cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc-----CCCccEEEEeCChhh
Confidence 5999999999888 9999999999999999999999999999999999 69999988632 589999999999999
Q ss_pred cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
|+++|+.+.++|+|||+|++||++++|.+..|.. +..++ ..+.++.|++.+.++|+++++++|+|||+.+++|+
T Consensus 145 yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 145 YPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred CHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence 9999999999999999999999999999987742 22222 56679999999999999999999999999999986
No 4
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1e-32 Score=208.11 Aligned_cols=149 Identities=35% Similarity=0.555 Sum_probs=132.7
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|+||++++... ++++|+++|.+++.++.|++|++++|+.++|+++.||+.+.++.+.+. ...++||+||+|++++.|
T Consensus 129 tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y 207 (278)
T PLN02476 129 TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMY 207 (278)
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHH
Confidence 599999999866 488999999999999999999999999999999999999999876311 013589999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
.++++.+.++|+|||+|++||++|+|.+..|...- ..+..+++|++.+.++|++.++++|+|||+++++|+
T Consensus 208 ~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d------~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 208 QDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND------AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC------HHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence 99999999999999999999999999998775311 146689999999999999999999999999999985
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=6e-32 Score=201.05 Aligned_cols=155 Identities=54% Similarity=0.917 Sum_probs=135.8
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
+|+||+++++.. ++++|+++|+++++++.|++|++++|+.++++++.||+.+.++.+.+. .+.++||+||+|+.++.|
T Consensus 79 ~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y 157 (234)
T PLN02781 79 TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNY 157 (234)
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHH
Confidence 488999999865 488999999999999999999999999989999999999998876321 013589999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEeC
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 157 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~~ 157 (157)
..+++.+.++|+|||+|++||++|+|.+..|....+++.+. ..+.+++|++.+.++|++.++++|+|||+.+++|+.
T Consensus 158 ~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~ 234 (234)
T PLN02781 158 VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234 (234)
T ss_pred HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence 99999999999999999999999999998876443433333 568899999999999999999999999999999863
No 6
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.2e-29 Score=182.28 Aligned_cols=150 Identities=50% Similarity=0.829 Sum_probs=134.5
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
+|+|.+.+|.+.| +++|+++|++++.++.+.+..+.+|..++|++++|++.+.+.++.+. .+.++||++|+|++|.+|
T Consensus 84 TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~-~~~~tfDfaFvDadK~nY 162 (237)
T KOG1663|consen 84 TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD-GESGTFDFAFVDADKDNY 162 (237)
T ss_pred cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc-CCCCceeEEEEccchHHH
Confidence 6999999999876 89999999999999999999999999999999999999999988653 245789999999999999
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHH---HHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL---DLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++++.+++++||+|++||++|+|.+..|....+. ....++ +++..|..||++..+++|+|||+.+++|+
T Consensus 163 ~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~-----~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~ 237 (237)
T KOG1663|consen 163 SNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPV-----RGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR 237 (237)
T ss_pred HHHHHHHHhhcccccEEEEeccccCCcccCcccCCCc-----chhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence 9999999999999999999999999988777654432 334566 89999999999999999999999999985
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=4.7e-14 Score=93.05 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=74.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~-- 78 (157)
|..+..+++..++.+|+++|++|++++.|++++...+..++++++++|+ ...... .++||+|++.. ....
T Consensus 13 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D~v~~~~~~~~~~~ 85 (112)
T PF12847_consen 13 GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFDLVICSGFTLHFLL 85 (112)
T ss_dssp SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEEEEEECSGSGGGCC
T ss_pred CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCCEEEECCCcccccc
Confidence 5566667776799999999999999999999998888888999999999 332222 46799999988 3222
Q ss_pred ----cHHHHHHHHhcccCCeEEEEec
Q 031568 79 ----YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ----~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+|||+++++.
T Consensus 86 ~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 86 PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2456889999999999999864
No 8
>PRK04457 spermidine synthase; Provisional
Probab=99.53 E-value=4.2e-13 Score=101.54 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=76.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+.+++++|++|++++.|++++...+..++++++.+|+.++++.. .++||+|++|....
T Consensus 78 G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------~~~yD~I~~D~~~~~~~~ 151 (262)
T PRK04457 78 GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------RHSTDVILVDGFDGEGII 151 (262)
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------CCCCCEEEEeCCCCCCCc
Confidence 44555566777999999999999999999999876655578999999999998754 46899999997322
Q ss_pred ---ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ---NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ---~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...++++.+.+.|+|||+++++
T Consensus 152 ~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 152 DALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred cccCcHHHHHHHHHhcCCCcEEEEE
Confidence 1368999999999999999995
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.51 E-value=7.2e-13 Score=94.20 Aligned_cols=86 Identities=23% Similarity=0.255 Sum_probs=77.9
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
++...|.++|++||.++++++..++|++++|. ++++++.|++.+.++.+ .+||.||+.+. ..+..+++.+.
T Consensus 52 ~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~~-------~~~daiFIGGg-~~i~~ile~~~ 122 (187)
T COG2242 52 WALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPDL-------PSPDAIFIGGG-GNIEEILEAAW 122 (187)
T ss_pred HHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcCC-------CCCCEEEECCC-CCHHHHHHHHH
Confidence 55567999999999999999999999999996 59999999999998743 37999999998 78899999999
Q ss_pred hcccCCeEEEEeccc
Q 031568 88 KLLKVGGIAVYDNTL 102 (157)
Q Consensus 88 ~~L~~gG~iv~~~~~ 102 (157)
..|+|||.||++.+.
T Consensus 123 ~~l~~ggrlV~nait 137 (187)
T COG2242 123 ERLKPGGRLVANAIT 137 (187)
T ss_pred HHcCcCCeEEEEeec
Confidence 999999999998664
No 10
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.44 E-value=2e-13 Score=89.57 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=51.1
Q ss_pred CcccHHHHHhhCC-C--cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-
Q 031568 1 MHLPTKLFMTGNK-I--LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK- 76 (157)
Q Consensus 1 ~g~st~~l~~~~~-~--~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~- 76 (157)
.|.||.++++..+ . ++++++|..+. .+.+++++++.++.++++++.++..+.++.+. .++||+||+|+++
T Consensus 7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 7 SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEEES---
T ss_pred cccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEECCCCC
Confidence 3889999888543 3 38999999997 55666777777887899999999999998774 3689999999975
Q ss_pred -cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+.....++.+.++|+|||+|+++++
T Consensus 81 ~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 3455678888999999999999874
No 11
>PLN03075 nicotianamine synthase; Provisional
Probab=99.44 E-value=6.7e-13 Score=101.30 Aligned_cols=92 Identities=14% Similarity=0.294 Sum_probs=78.7
Q ss_pred cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC----C
Q 031568 2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA----D 75 (157)
Q Consensus 2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~----~ 75 (157)
|+|++++++ ..|+++++++|+|+++++.||++++. .++.++++|+.+|+.+..+. .++||+||+++ +
T Consensus 136 pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-------l~~FDlVF~~ALi~~d 208 (296)
T PLN03075 136 PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-------LKEYDVVFLAALVGMD 208 (296)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-------cCCcCEEEEecccccc
Confidence 567777776 56999999999999999999999965 88888999999999885321 35799999986 3
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+..+.++++.+.+.|+|||++++..
T Consensus 209 k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 209 KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccHHHHHHHHHHhcCCCcEEEEec
Confidence 5678899999999999999999975
No 12
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.43 E-value=1.6e-12 Score=102.69 Aligned_cols=88 Identities=19% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC------------ccc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------------~~~ 79 (157)
...+|++||.+...++.|++|++.+|++ ++++++++|+.++++.... .+.+||+|++||+. +.|
T Consensus 239 GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---~g~~fDlIilDPPsF~r~k~~~~~~~rdy 315 (393)
T COG1092 239 GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---RGEKFDLIILDPPSFARSKKQEFSAQRDY 315 (393)
T ss_pred CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---cCCcccEEEECCcccccCcccchhHHHHH
Confidence 3449999999999999999999999986 6799999999999998753 24589999999852 246
Q ss_pred HHHHHHHHhcccCCeEEEEecccC
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+...+.++|+|||++++.++..
T Consensus 316 ~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 316 KDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred HHHHHHHHHHcCCCCEEEEEecCC
Confidence 778888999999999999977653
No 13
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.43 E-value=3.5e-12 Score=92.31 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=94.7
Q ss_pred HHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568 5 TKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNYC- 80 (157)
Q Consensus 5 t~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~- 80 (157)
|+.|+. +..+++++||-.+++.....++.+...+..+.++|+.|+. .+.++.+ ...|++++|+..+++.
T Consensus 58 tiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------~~iDF~vVDc~~~d~~~ 130 (218)
T PF07279_consen 58 TIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------KGIDFVVVDCKREDFAA 130 (218)
T ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-------cCCCEEEEeCCchhHHH
Confidence 444555 4589999999999999999999999999887889999985 5577665 4699999999877777
Q ss_pred HHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR 154 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~ 154 (157)
.+|+.+ ++-+.|.++|+.|...++.- --.|...++..+.+.+++||+|.|++|++
T Consensus 131 ~vl~~~-~~~~~GaVVV~~Na~~r~~~------------------~~~w~~~~~~~r~Vrsv~LPIG~GleVt~ 185 (218)
T PF07279_consen 131 RVLRAA-KLSPRGAVVVCYNAFSRSTN------------------GFSWRSVLRGRRVVRSVFLPIGKGLEVTR 185 (218)
T ss_pred HHHHHh-ccCCCceEEEEeccccCCcC------------------CccHHHhcCCCCceeEEEeccCCCeEEEE
Confidence 777654 44456788888897643210 01233445667789999999999999986
No 14
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=7.9e-12 Score=100.83 Aligned_cols=132 Identities=23% Similarity=0.257 Sum_probs=95.4
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|.-|+.++.. .+.++|+++|+++++++.+++|++++|+. +++++.+|+.+....... ..++||.|++|+++..
T Consensus 264 G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~---~~~~fD~Vl~DaPCSg~G 339 (434)
T PRK14901 264 GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQ---WRGYFDRILLDAPCSGLG 339 (434)
T ss_pred chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccccc---ccccCCEEEEeCCCCccc
Confidence 4556666664 35689999999999999999999999986 699999999875321100 1357999999975421
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD 135 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (157)
..++++.+.++|+|||.+++.++... |++ ....+..|+ ..
T Consensus 340 ~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~~E---------ne~~v~~~l---~~ 402 (434)
T PRK14901 340 TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----PAE---------NEAQIEQFL---AR 402 (434)
T ss_pred ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh---------HHHHHHHHH---Hh
Confidence 13568888899999999999876542 221 445566664 56
Q ss_pred CCCeeEE-----eeec---CCeeEEEE
Q 031568 136 DPRVQLS-----HVAL---GDGITICR 154 (157)
Q Consensus 136 ~~~~~~~-----~~p~---~~G~~v~~ 154 (157)
+|+|... ++|- +||+++|+
T Consensus 403 ~~~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 403 HPDWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred CCCcEecCCCCccCCCCCCCCcEEEEE
Confidence 7777533 4553 59999985
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.40 E-value=3e-12 Score=91.90 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=75.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..+..++...++++|+++|.++++++.+++++++.+++ +++++.+|+.+... .++||+|++++ ...+.
T Consensus 53 tG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~--------~~~fD~I~s~~-~~~~~ 122 (181)
T TIGR00138 53 AGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH--------EEQFDVITSRA-LASLN 122 (181)
T ss_pred CCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc--------cCCccEEEehh-hhCHH
Confidence 3666777777778899999999999999999999999885 69999999987521 46899999987 45677
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.++|+|||.+++.
T Consensus 123 ~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 8889999999999999974
No 16
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.38 E-value=2.3e-11 Score=98.04 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=75.2
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|--|+.++... ++++|+++|+++++++.+++|+++.|+. +++++.+|+.+..... .++||.|++|++...
T Consensus 249 Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~------~~~fD~Vl~DaPCsg~G 321 (431)
T PRK14903 249 GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYV------QDTFDRILVDAPCTSLG 321 (431)
T ss_pred cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhh------hccCCEEEECCCCCCCc
Confidence 44566666643 6789999999999999999999999986 6999999998753222 457999999986521
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..++++.+.++|+|||.+++..+..
T Consensus 322 ~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 322 TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred cccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1345778889999999999988764
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.37 E-value=5.8e-12 Score=90.84 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=75.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..+..++...|+++|+++|+++++++.|+++++..+++ +++++.+|+.+... .++||+|+++.. ..+.
T Consensus 56 tG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~--------~~~fDlV~~~~~-~~~~ 125 (187)
T PRK00107 56 AGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ--------EEKFDVVTSRAV-ASLS 125 (187)
T ss_pred CCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC--------CCCccEEEEccc-cCHH
Confidence 3666777777778999999999999999999999999986 49999999987421 358999999863 4578
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.++|+|||.+++.
T Consensus 126 ~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 126 DLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred HHHHHHHHhcCCCeEEEEE
Confidence 8999999999999999975
No 18
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.37 E-value=2.9e-11 Score=87.03 Aligned_cols=90 Identities=22% Similarity=0.183 Sum_probs=75.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...|+++|+++|+++++++.|++|+++.++. +++++.+|+... + .++||+||++.....+..
T Consensus 43 G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~------~~~~D~v~~~~~~~~~~~ 112 (187)
T PRK08287 43 GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L------PGKADAIFIGGSGGNLTA 112 (187)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c------CcCCCEEEECCCccCHHH
Confidence 656666777778899999999999999999999998875 799999997532 1 357999999876666788
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.+.|+|||.+++..+
T Consensus 113 ~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 113 IIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred HHHHHHHhcCCCeEEEEEEe
Confidence 89999999999999998654
No 19
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=3.4e-11 Score=95.92 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC------------ccc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------------~~~ 79 (157)
+..+|+++|+++.+++.|++|++.+|++ ++++++++|+.++++.+.. ..++||+|++|++. ..|
T Consensus 242 ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---~~~~fDlVilDPP~f~~~k~~l~~~~~~y 318 (396)
T PRK15128 242 GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---RGEKFDVIVMDPPKFVENKSQLMGACRGY 318 (396)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh---cCCCCCEEEECCCCCCCChHHHHHHHHHH
Confidence 4569999999999999999999999986 5899999999999876531 14579999999863 236
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+++..+.++|+|||++++-.+
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEeC
Confidence 6677788899999999987543
No 20
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.36 E-value=1.3e-11 Score=89.71 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=75.2
Q ss_pred HHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 6 KLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 6 ~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
..++.. .+.++|+++|+++++++.|++|++.+++.++++++.+|+.+.++.. .++||+||++.....+..+++
T Consensus 56 ~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~~~D~V~~~~~~~~~~~~l~ 129 (198)
T PRK00377 56 VEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIIS 129 (198)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CCCCCEEEECCCcccHHHHHH
Confidence 334433 3578999999999999999999999987678999999998877643 468999999876667788999
Q ss_pred HHHhcccCCeEEEEecc
Q 031568 85 RLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~~~ 101 (157)
.+.+.|+|||.++++.+
T Consensus 130 ~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 130 ASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HHHHHcCCCcEEEEEee
Confidence 99999999999998654
No 21
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.36 E-value=8.3e-12 Score=83.40 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=75.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...|+.+|+++|+++.+++.++++++..+.. +++++.+|+.+.++.. .++||.|+++.....+..
T Consensus 31 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~D~v~~~~~~~~~~~ 103 (124)
T TIGR02469 31 GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS------LPEPDRVFIGGSGGLLQE 103 (124)
T ss_pred CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh------cCCCCEEEECCcchhHHH
Confidence 445556776778899999999999999999999998875 7999999987544332 358999999876666788
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+++.+.+.|+|||.+++.
T Consensus 104 ~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 104 ILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 999999999999999985
No 22
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.34 E-value=6.7e-11 Score=89.67 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=73.2
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|--|+.++... +.++|+++|+++.+++.+++|++++|+. +++++.+|+..... . .++||.|++|++...
T Consensus 83 G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~-~------~~~fD~Vl~D~Pcsg~G 154 (264)
T TIGR00446 83 GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGA-A------VPKFDAILLDAPCSGEG 154 (264)
T ss_pred hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhh-h------ccCCCEEEEcCCCCCCc
Confidence 44455566644 4679999999999999999999999985 69999999976532 1 356999999985432
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..++++.+.++|+|||++++..+..
T Consensus 155 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 155 VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1347778889999999999987654
No 23
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=4e-11 Score=97.01 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=75.6
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|..|+.++... ++++|+++|+++.+++.+++|+++.|+. +++++++|+.+..+.+ .++||+|++|++...
T Consensus 262 G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~------~~~fD~Vl~D~Pcsg~G 334 (444)
T PRK14902 262 GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKF------AEKFDKILVDAPCSGLG 334 (444)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchh------cccCCEEEEcCCCCCCe
Confidence 55566667654 6889999999999999999999999986 5999999998764333 357999999985321
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..++++.+.++|+|||.+++.++..
T Consensus 335 ~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 335 VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1346788889999999999877654
No 24
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.34 E-value=1.6e-11 Score=81.53 Aligned_cols=91 Identities=24% Similarity=0.450 Sum_probs=71.3
Q ss_pred cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568 2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-- 77 (157)
Q Consensus 2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-- 77 (157)
|..+..++. .. ..+++++|++|..++.++++++..++.++++++++|+.+..+.+ ..++||+|+.|++..
T Consensus 10 G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 10 GSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLIVTNPPYGPR 83 (117)
T ss_dssp TTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEEEE--STTSB
T ss_pred chHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEEEECCCCccc
Confidence 334444333 43 69999999999999999999999999889999999999887544 267899999998532
Q ss_pred ---------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 ---------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ---------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+..+++.+.++|+|||++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 84 SGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 245778999999999999986
No 25
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=4.3e-11 Score=96.38 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=92.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..|+.++...++++|+++|+++++++.+++|+++.|+. ++++.+|+.+..... ..++||.|++|++...
T Consensus 256 G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~-----~~~~fD~Vl~D~Pcs~~G~ 328 (427)
T PRK10901 256 GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWW-----DGQPFDRILLDAPCSATGV 328 (427)
T ss_pred ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhc-----ccCCCCEEEECCCCCcccc
Confidence 556777777666689999999999999999999999874 789999997643222 1467999999986421
Q ss_pred ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568 79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 136 (157)
Q Consensus 79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (157)
...+++.+.++|+|||.+++..+... +.+ ....++.|++ .+
T Consensus 329 ~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~-----~~E---------ne~~v~~~l~---~~ 391 (427)
T PRK10901 329 IRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL-----PEE---------NEQQIKAFLA---RH 391 (427)
T ss_pred cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----hhh---------CHHHHHHHHH---hC
Confidence 12567888899999999999876432 111 3345566643 34
Q ss_pred CCee-----------EEeeec---CCeeEEEE
Q 031568 137 PRVQ-----------LSHVAL---GDGITICR 154 (157)
Q Consensus 137 ~~~~-----------~~~~p~---~~G~~v~~ 154 (157)
+++. ..++|- +||+++|+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~ 423 (427)
T PRK10901 392 PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL 423 (427)
T ss_pred CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence 4432 345663 69999985
No 26
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.33 E-value=1.9e-11 Score=93.14 Aligned_cols=89 Identities=25% Similarity=0.425 Sum_probs=68.4
Q ss_pred HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---------cc
Q 031568 9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DN 78 (157)
Q Consensus 9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---------~~ 78 (157)
|+.....+|++||.+..+++.+++|++.+|++ ++++++.+|+.+++..+.+ .++||+|++||+. ..
T Consensus 141 Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----~~~fD~IIlDPPsF~k~~~~~~~~ 216 (286)
T PF10672_consen 141 AAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----GGRFDLIILDPPSFAKSKFDLERD 216 (286)
T ss_dssp HHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----TT-EEEEEE--SSEESSTCEHHHH
T ss_pred HHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----CCCCCEEEECCCCCCCCHHHHHHH
Confidence 33444568999999999999999999999986 6899999999999987643 4689999999863 24
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
|..++..+.++|+|||++++-.+
T Consensus 217 y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 217 YKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCCEEEEEcC
Confidence 77788889999999999887544
No 27
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.33 E-value=2.9e-11 Score=97.39 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=92.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..|+.++...++++|+++|+++++++.+++|+++.|+..++.+..+|+.+..... ..++||.|++|++...
T Consensus 250 G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~-----~~~~fD~VllDaPcSg~G~ 324 (426)
T TIGR00563 250 GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA-----ENEQFDRILLDAPCSATGV 324 (426)
T ss_pred cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc-----cccccCEEEEcCCCCCCcc
Confidence 55667777766688999999999999999999999998644555777765432111 1467999999975321
Q ss_pred ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568 79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 136 (157)
Q Consensus 79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (157)
...+++.+.++|+|||.+++.++... |++ ....++.|++ .+
T Consensus 325 ~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~-----~~E---------ne~~v~~~l~---~~ 387 (426)
T TIGR00563 325 IRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL-----PEE---------NSEQIKAFLQ---EH 387 (426)
T ss_pred cccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----hhh---------CHHHHHHHHH---hC
Confidence 13578888899999999999887542 211 4456666754 34
Q ss_pred CCee--------------EEeeec---CCeeEEEEE
Q 031568 137 PRVQ--------------LSHVAL---GDGITICRR 155 (157)
Q Consensus 137 ~~~~--------------~~~~p~---~~G~~v~~~ 155 (157)
|.+. ..++|. +||+++|+=
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 423 (426)
T TIGR00563 388 PDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL 423 (426)
T ss_pred CCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence 4332 245663 599998863
No 28
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=4.4e-11 Score=96.79 Aligned_cols=93 Identities=25% Similarity=0.193 Sum_probs=74.3
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|-.|..++... ++++|+++|+++++++.+++|+++.|+. +|+++.+|+.+..+ .++||.|++|++...
T Consensus 262 G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~--------~~~fD~Vl~D~Pcsg~g 332 (445)
T PRK14904 262 GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP--------EEQPDAILLDAPCTGTG 332 (445)
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc--------CCCCCEEEEcCCCCCcc
Confidence 55566666643 4679999999999999999999999985 79999999987532 467999999975321
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...++..+.+.|+|||.+++..+..
T Consensus 333 ~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 333 VLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred hhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1246788889999999999987754
No 29
>PRK00811 spermidine synthase; Provisional
Probab=99.32 E-value=9.1e-11 Score=89.78 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=68.2
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C--CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----- 78 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~--~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----- 78 (157)
+++..+..+|++||+|+++++.|++++...+ . ++|++++.+|+.++++.. .++||+|++|...+.
T Consensus 94 ~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------~~~yDvIi~D~~dp~~~~~~ 167 (283)
T PRK00811 94 VLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------ENSFDVIIVDSTDPVGPAEG 167 (283)
T ss_pred HHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC------CCcccEEEECCCCCCCchhh
Confidence 4433346799999999999999999987642 2 468999999999988752 568999999963221
Q ss_pred --cHHHHHHHHhcccCCeEEEEe
Q 031568 79 --YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 --~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.+.|+|||+++..
T Consensus 168 l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 168 LFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred hhHHHHHHHHHHhcCCCcEEEEe
Confidence 256788999999999999974
No 30
>PRK01581 speE spermidine synthase; Validated
Probab=99.31 E-value=7.2e-11 Score=92.36 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=66.4
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHH--H---HcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~--~---~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
+++..+..+|++||+|+++++.|+++. . +.++ ++|++++.+|+.++++.. .++||+|++|...+.
T Consensus 168 lLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------~~~YDVIIvDl~DP~~~~ 241 (374)
T PRK01581 168 VLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------SSLYDVIIIDFPDPATEL 241 (374)
T ss_pred HHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------CCCccEEEEcCCCccccc
Confidence 333335689999999999999999732 1 2222 479999999999998753 568999999964321
Q ss_pred -----cHHHHHHHHhcccCCeEEEEe
Q 031568 79 -----YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 -----~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.+.|+|||++++.
T Consensus 242 ~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 242 LSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 256889999999999999885
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.30 E-value=1.1e-10 Score=89.31 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=72.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++...|+.+|+++|+++.+++.|++|++.+++.++++++.+|+.+.++ .++||+|++|++.-
T Consensus 133 G~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--------~~~fD~Iv~NPPy~~~~~ 204 (284)
T TIGR03533 133 GCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--------GRKYDLIVSNPPYVDAED 204 (284)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------CCCccEEEECCCCCCccc
Confidence 444555666778999999999999999999999999987789999999976542 45799999986420
Q ss_pred ------------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 ------------------------NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ------------------------~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+..++..+.++|+|||.++++.
T Consensus 205 ~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 205 MADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred hhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12455777788999999999864
No 32
>PLN02366 spermidine synthase
Probab=99.29 E-value=1.8e-10 Score=89.03 Aligned_cols=84 Identities=18% Similarity=0.370 Sum_probs=67.8
Q ss_pred hCC-CcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------cc
Q 031568 11 GNK-ILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NY 79 (157)
Q Consensus 11 ~~~-~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~ 79 (157)
+.| ..+|+.||+|+.+++.|++++... ++ ++|++++.+|+.+++.... .++||+|++|...+ ..
T Consensus 111 k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----~~~yDvIi~D~~dp~~~~~~L~t 185 (308)
T PLN02366 111 RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----EGTYDAIIVDSSDPVGPAQELFE 185 (308)
T ss_pred hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----CCCCCEEEEcCCCCCCchhhhhH
Confidence 445 579999999999999999998754 23 3689999999999987541 45799999997542 13
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
.++++.+.+.|+|||+++..
T Consensus 186 ~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 186 KPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHHHHHhcCCCcEEEEC
Confidence 57899999999999999874
No 33
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=3e-11 Score=89.93 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=75.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|+-.++++++.+.++|++||+++++++.|++|++.+++++||+++++|..++.+... ..+||+|+++++.
T Consensus 56 G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 56 GALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASFDLIICNPPYFKQGS 130 (248)
T ss_pred CHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----ccccCEEEeCCCCCCCcc
Confidence 333344555657799999999999999999999999999999999999999987653 4579999998741
Q ss_pred c----------------ccHHHHHHHHhcccCCeEEEE
Q 031568 77 D----------------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ~----------------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
. ..+++++.+..+|++||.+.+
T Consensus 131 ~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 131 RLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred ccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 0 246788888899999999987
No 34
>PLN02823 spermine synthase
Probab=99.27 E-value=1.5e-10 Score=90.32 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=68.2
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------- 77 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------- 77 (157)
+++..+..+|++||+|++.++.|++++...+ + ++|++++.+|+.++++.. .++||+||+|...+
T Consensus 121 ~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------~~~yDvIi~D~~dp~~~~~~~ 194 (336)
T PLN02823 121 VLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------DEKFDVIIGDLADPVEGGPCY 194 (336)
T ss_pred HHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------CCCccEEEecCCCccccCcch
Confidence 4444457899999999999999999986532 2 478999999999999653 56899999995321
Q ss_pred --ccHHHHH-HHHhcccCCeEEEEe
Q 031568 78 --NYCNYHE-RLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --~~~~~~~-~~~~~L~~gG~iv~~ 99 (157)
...++++ .+.+.|+|||++++.
T Consensus 195 ~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 195 QLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred hhccHHHHHHHHHHhcCCCcEEEEe
Confidence 1356787 889999999999875
No 35
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=2.7e-10 Score=82.60 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=75.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+..++++|+++.+++.|++++.+.++. +++++++|+.+..+... +.+++|.|+++.+.+
T Consensus 28 G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~d~v~~~~pdpw~k~ 102 (194)
T TIGR00091 28 GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSLSKVFLNFPDPWPKK 102 (194)
T ss_pred cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCceeEEEEECCCcCCCC
Confidence 555666777889999999999999999999999998885 89999999998765432 245899999875321
Q ss_pred -------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+.+.
T Consensus 103 ~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 103 RHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred CccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 1257899999999999999873
No 36
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.25 E-value=6e-11 Score=100.76 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=75.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|..++.++.. +..+|+++|+++.+++.|++|++.+|++ ++++++++|+.++++.+ .++||+|++|++.
T Consensus 550 G~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~------~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 550 GTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA------REQFDLIFIDPPTFSNS 622 (702)
T ss_pred CHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc------CCCcCEEEECCCCCCCC
Confidence 4445444443 4557999999999999999999999986 68999999999988654 4689999999862
Q ss_pred ----------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 ----------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ----------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..|.+++..+.++|+|||++++...
T Consensus 623 ~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 623 KRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1256678888899999999988754
No 37
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=3.4e-11 Score=85.55 Aligned_cols=88 Identities=18% Similarity=0.344 Sum_probs=70.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|+=++.++...|..+|+++|+++.+++.+++|++.+++++ ++++.+|..+.++ .++||+|+++++..
T Consensus 43 G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--------~~~fD~Iv~NPP~~~~~~ 113 (170)
T PF05175_consen 43 GVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--------DGKFDLIVSNPPFHAGGD 113 (170)
T ss_dssp SHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--------TTCEEEEEE---SBTTSH
T ss_pred HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--------ccceeEEEEccchhcccc
Confidence 5556667777889899999999999999999999999976 9999999987543 47899999998532
Q ss_pred ----ccHHHHHHHHhcccCCeEEEE
Q 031568 78 ----NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ----~~~~~~~~~~~~L~~gG~iv~ 98 (157)
....+++.+.++|+|||.+++
T Consensus 114 ~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 114 DGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp CHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhHHHHHHHHHHhccCCCEEEE
Confidence 245678888899999999854
No 38
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.25 E-value=1.3e-10 Score=84.28 Aligned_cols=92 Identities=18% Similarity=0.119 Sum_probs=74.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..|..++...++++|+++|+++++++.+++|+++++.. +++++.+|+.+.++.+ ...+|.++++.. .....
T Consensus 52 G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~------~~~~d~v~~~~~-~~~~~ 123 (196)
T PRK07402 52 GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQL------APAPDRVCIEGG-RPIKE 123 (196)
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhC------CCCCCEEEEECC-cCHHH
Confidence 555556665668899999999999999999999999884 7999999998765543 345789999864 34578
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.++|+|||.+++...
T Consensus 124 ~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 124 ILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHhcCCCeEEEEEee
Confidence 89999999999999998754
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=6.4e-11 Score=91.57 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=72.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+.+|+++|+++.+++.|++|++.+++.++++++++|+.+.++ .++||+|+++++.-
T Consensus 145 G~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--------~~~fDlIvsNPPyi~~~~ 216 (307)
T PRK11805 145 GCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--------GRRYDLIVSNPPYVDAED 216 (307)
T ss_pred hHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------CCCccEEEECCCCCCccc
Confidence 444455666778999999999999999999999999987789999999876542 35799999986310
Q ss_pred ------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ------------------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ------------------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.|..+++.+.++|+|||.++++
T Consensus 217 ~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 217 MADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred hhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1345677788899999999986
No 40
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=5.5e-11 Score=86.92 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=71.8
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..|..++... +.++|+++|+++++++.|++|+++.+..++++++.+|+.+.++. .++||.|+++......
T Consensus 84 G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~- 155 (205)
T PRK13944 84 GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------HAPFDAIIVTAAASTI- 155 (205)
T ss_pred cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------CCCccEEEEccCcchh-
Confidence 66777777654 47899999999999999999999999877899999999875432 4589999999765443
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
.+.+.+.|+|||.+++.
T Consensus 156 --~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 156 --PSALVRQLKDGGVLVIP 172 (205)
T ss_pred --hHHHHHhcCcCcEEEEE
Confidence 35677899999999885
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=2.2e-10 Score=83.61 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=74.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
.|..|..++...|+.+|+++|+++++++.|+++++..++ ++++++++|+.+.++... ..++||.|++....+
T Consensus 51 tG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~ 125 (202)
T PRK00121 51 KGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPK 125 (202)
T ss_pred CCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCC
Confidence 366777787777889999999999999999999999887 479999999955554321 256899999853211
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+++.
T Consensus 126 ~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 126 KRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred ccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 1467899999999999999874
No 42
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=9.2e-11 Score=87.00 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=73.4
Q ss_pred HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
|++|+. -.|.++|+++|+.++.++.|++|+++.++.+++++..+|+.+... ++.||.||+|-+ ...+++
T Consensus 109 t~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--------~~~vDav~LDmp--~PW~~l 178 (256)
T COG2519 109 TAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLP--DPWNVL 178 (256)
T ss_pred HHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------ccccCEEEEcCC--ChHHHH
Confidence 445554 458899999999999999999999999999889999999998754 458999999975 568899
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.|+|||.+++
T Consensus 179 e~~~~~Lkpgg~~~~ 193 (256)
T COG2519 179 EHVSDALKPGGVVVV 193 (256)
T ss_pred HHHHHHhCCCcEEEE
Confidence 999999999999987
No 43
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=9.9e-11 Score=87.00 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=78.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~ 77 (157)
+|-.|..++...+.++|+++|+++.|++.|++.+...+... +++++|||.+. | + ++++||+|.+.... .
T Consensus 62 TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~sFD~vt~~fglrnv~ 133 (238)
T COG2226 62 TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDNSFDAVTISFGLRNVT 133 (238)
T ss_pred ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCCccCEEEeeehhhcCC
Confidence 35567778887789999999999999999999999988875 99999999864 5 3 37899999987643 3
Q ss_pred ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+++..++++.|.|+|||.+++-+..
T Consensus 134 d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 134 DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 5788899999999999999886543
No 44
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=7.7e-11 Score=86.61 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=70.8
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|+.|..++... ++++|+++|+++++++.|+++++..+.. +++++.+|+.+..+ ..++||+|++++.....
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~-------~~~~fD~I~~~~~~~~~ 158 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE-------ENAPYDRIYVTAAGPDI 158 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC-------cCCCcCEEEECCCcccc
Confidence 367777777653 5689999999999999999999999874 89999999876532 14689999998865544
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
+ +.+.+.|+|||.+++.
T Consensus 159 ~---~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 159 P---KPLIEQLKDGGIMVIP 175 (212)
T ss_pred h---HHHHHhhCCCcEEEEE
Confidence 3 4567789999999884
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.20 E-value=1e-10 Score=81.39 Aligned_cols=94 Identities=24% Similarity=0.299 Sum_probs=76.1
Q ss_pred cccHHHHH-hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568 2 HLPTKLFM-TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D 77 (157)
Q Consensus 2 g~st~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~ 77 (157)
|..+..++ ..+|+++++++|+++++++.|++++++.+.. +++++++|+.+ ++... .++||+|++.+.. .
T Consensus 15 G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~D~I~~~~~l~~~~ 87 (152)
T PF13847_consen 15 GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKFDIIISNGVLHHFP 87 (152)
T ss_dssp SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTEEEEEEESTGGGTS
T ss_pred cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCeeEEEEcCchhhcc
Confidence 55555666 3568999999999999999999999999987 89999999998 54210 2689999998642 3
Q ss_pred ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....++.+.++|+++|++++....
T Consensus 88 ~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 88 DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3456789999999999999987654
No 46
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=6.7e-11 Score=85.76 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=73.5
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
.|.||.+|+.++|++.|+++|.|++|++.|++.+ .+++|..+|+.++-+ +.+.|++|.++. .+
T Consensus 41 pGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~~dllfaNAvlqWlp 106 (257)
T COG4106 41 PGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQPTDLLFANAVLQWLP 106 (257)
T ss_pred CCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCccchhhhhhhhhhcc
Confidence 3889999999999999999999999999996643 468999999999854 568999999874 34
Q ss_pred ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.-.+.|..+...|.|||++.+..
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEEC
Confidence 45678899999999999999853
No 47
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.19 E-value=1.1e-09 Score=83.39 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=68.3
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----c-
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N- 78 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~- 78 (157)
+++..+..+++++|+++++++.|++++...+ . .++++++.+|+.++++.. .++||+|++|...+ .
T Consensus 90 ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------~~~yDvIi~D~~~~~~~~~~l 163 (270)
T TIGR00417 90 VLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------ENTFDVIIVDSTDPVGPAETL 163 (270)
T ss_pred HHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------CCCccEEEEeCCCCCCcccch
Confidence 3333346799999999999999999986643 1 357999999999998754 56899999997421 1
Q ss_pred -cHHHHHHHHhcccCCeEEEEe
Q 031568 79 -YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 -~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.++|+|||++++.
T Consensus 164 ~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 164 FTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hHHHHHHHHHHHhCCCcEEEEc
Confidence 357788999999999999985
No 48
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.9e-10 Score=87.77 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=73.1
Q ss_pred cHHHHHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 4 PTKLFMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 4 st~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
=|+.+++.. ++..|+++|+++..++..++|+++.|+. ++.+++.|+........ ..++||.|++|++++.
T Consensus 170 KTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~ 244 (355)
T COG0144 170 KTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP----GGEKFDRILLDAPCSGTGV 244 (355)
T ss_pred HHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEeccccccccccc----ccCcCcEEEECCCCCCCcc
Confidence 356666643 3577799999999999999999999997 58888888875543321 1236999999986432
Q ss_pred ----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
-.++++.+.++|+|||+||+.+|..
T Consensus 245 irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 1357788889999999999998865
No 49
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.18 E-value=5.2e-10 Score=90.80 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=74.4
Q ss_pred cHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----
Q 031568 4 PTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---- 78 (157)
Q Consensus 4 st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---- 78 (157)
-|+.+++.. ..+.|+++|+++..++.+++|+++.|+. ++.+...|+.+..+.+ .+.||.|++|++++.
T Consensus 127 KTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~------~~~fD~ILvDaPCSG~G~~ 199 (470)
T PRK11933 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAAL------PETFDAILLDAPCSGEGTV 199 (470)
T ss_pred HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhc------hhhcCeEEEcCCCCCCccc
Confidence 355556543 5689999999999999999999999996 7999999998754433 457999999986541
Q ss_pred ---------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 ---------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ---------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
-.++++.+.++|+|||+||+.+|..
T Consensus 200 rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 200 RKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 1356778889999999999988865
No 50
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.18 E-value=7.4e-11 Score=86.44 Aligned_cols=88 Identities=19% Similarity=0.255 Sum_probs=71.2
Q ss_pred CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|+.|++++. ..+.++|++||+++..++.|+++++..+.. +|+++++|...-.+. ..+||.|++.+..+..
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~-------~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPE-------EAPFDRIIVTAAVPEI 154 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGG-------G-SEEEEEESSBBSS-
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcccc-------CCCcCEEEEeeccchH
Confidence 4888999888 456789999999999999999999999986 899999999876543 4689999999876554
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
+ ....+.|++||++|+-
T Consensus 155 p---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 155 P---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp ----HHHHHTEEEEEEEEEE
T ss_pred H---HHHHHhcCCCcEEEEE
Confidence 4 4456789999999983
No 51
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.17 E-value=6.5e-10 Score=79.91 Aligned_cols=88 Identities=25% Similarity=0.402 Sum_probs=68.4
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---cHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---~~~~~~~~~ 87 (157)
.+...+|++||.+++.++.+++|++..+..++++++.+|+...++++.. ...+||+||+||+... +.+.++.+.
T Consensus 62 SRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 62 SRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---KGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp HTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---CTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred hcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---cCCCceEEEECCCcccchHHHHHHHHHH
Confidence 4567899999999999999999999999988899999999999877632 2578999999997432 356777766
Q ss_pred --hcccCCeEEEEecc
Q 031568 88 --KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 --~~L~~gG~iv~~~~ 101 (157)
.+|+++|+|+++..
T Consensus 139 ~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 139 ENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HTTSEEEEEEEEEEEE
T ss_pred HCCCCCCCEEEEEEec
Confidence 69999999999764
No 52
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.17 E-value=1.7e-10 Score=84.91 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=71.1
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|..|..++... +.++|+++|+++++++.|++++++.++ ++++++.+|+.+..+. .++||+|++++.....
T Consensus 88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~ 159 (215)
T TIGR00080 88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKI 159 (215)
T ss_pred ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCcccc
Confidence 367777777754 468999999999999999999999998 4899999999765432 3589999999865444
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+.+.+.|+|||++++.
T Consensus 160 ---~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 160 ---PEALIDQLKEGGILVMP 176 (215)
T ss_pred ---cHHHHHhcCcCcEEEEE
Confidence 35567889999999884
No 53
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.16 E-value=1.3e-10 Score=86.48 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--- 76 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--- 76 (157)
+|..|..++... |.++|+++|+++.|++.|++.++..+.. +|+++++|+.+. +. ++++||.|++-...
T Consensus 58 tG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~------~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 58 TGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PF------PDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp TSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-------TT-EEEEEEES-GGG-
T ss_pred hHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cC------CCCceeEEEHHhhHHhh
Confidence 466666677654 6899999999999999999999998876 899999999874 42 26899999986533
Q ss_pred cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
++....++++.+.|+|||.+++-+
T Consensus 130 ~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 130 PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHcCCCeEEEEee
Confidence 346778999999999999988743
No 54
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=4.7e-10 Score=84.54 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++.. +.+|+++|+++++++.|+++++..|+.++++++++|+.+..+.. .++||+|++... ...
T Consensus 56 G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~V~~~~vl~~~~~ 127 (255)
T PRK11036 56 GQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDLILFHAVLEWVAD 127 (255)
T ss_pred hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCEEEehhHHHhhCC
Confidence 4444455543 68999999999999999999999998788999999998864322 568999998753 234
Q ss_pred cHHHHHHHHhcccCCeEEEE
Q 031568 79 YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++.+.++|+|||++++
T Consensus 128 ~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 128 PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 56789999999999999976
No 55
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.14 E-value=2.8e-09 Score=80.06 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCc-------ccHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKD-------NYCN 81 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~---~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~-------~~~~ 81 (157)
+..+|++||+||..++.|++++..... ++|++++.+|+..++.+. .+ +||+|++|...+ ...+
T Consensus 99 ~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------~~~~yDvIi~D~~dp~~~~~~l~t~e 172 (246)
T PF01564_consen 99 PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------QEEKYDVIIVDLTDPDGPAPNLFTRE 172 (246)
T ss_dssp T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------SST-EEEEEEESSSTTSCGGGGSSHH
T ss_pred CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------cCCcccEEEEeCCCCCCCcccccCHH
Confidence 478999999999999999999876432 479999999999999864 34 899999997432 1368
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
+++.+.+.|+|+|+++...
T Consensus 173 f~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhcCCCcEEEEEc
Confidence 9999999999999999864
No 56
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.13 E-value=2.1e-09 Score=82.01 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=73.5
Q ss_pred cHHH-HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-c
Q 031568 4 PTKL-FMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-N 78 (157)
Q Consensus 4 st~~-l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-~ 78 (157)
+|+. +++..+-.+++.||+|++.++.+++.+.... . ++|++++.+|+.++++.. .++||+|++|...+ .
T Consensus 89 ~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~~~fDvIi~D~tdp~g 162 (282)
T COG0421 89 GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------EEKFDVIIVDSTDPVG 162 (282)
T ss_pred HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------CCcCCEEEEcCCCCCC
Confidence 3444 3334568899999999999999999997643 3 479999999999999865 34899999997433 2
Q ss_pred ------cHHHHHHHHhcccCCeEEEEe
Q 031568 79 ------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.|.+.|+++|++++.
T Consensus 163 p~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 163 PAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 378999999999999999997
No 57
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-10 Score=83.58 Aligned_cols=85 Identities=18% Similarity=0.205 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.|+.|+.- .++|+++|+.++.++.|++|++..|+. +|.+++||...-.+. ..+||.|++.+..+..+
T Consensus 84 GY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~-------~aPyD~I~Vtaaa~~vP- 152 (209)
T COG2518 84 GYQAAVLARL--VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE-------EAPYDRIIVTAAAPEVP- 152 (209)
T ss_pred hHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCC-------CCCcCEEEEeeccCCCC-
Confidence 6888888874 339999999999999999999999997 599999999887653 57899999998765554
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+.+.+.|++||++++-
T Consensus 153 --~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 153 --EALLDQLKPGGRLVIP 168 (209)
T ss_pred --HHHHHhcccCCEEEEE
Confidence 3557889999999983
No 58
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.10 E-value=7.5e-10 Score=84.76 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=72.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++...|+.+|+++|+++++++.|++|++..++.++++++.+|+.+.++ ..+||+|+++++.-
T Consensus 126 G~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~--------~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 126 GCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLA--------GQKIDIIVSNPPYIDEED 197 (284)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCc--------CCCccEEEECCCCCCcch
Confidence 333445666678899999999999999999999999987679999999876432 34799999985310
Q ss_pred ------------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 ------------------------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ------------------------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+..+++.+.++|+|||+++++..
T Consensus 198 ~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 198 LADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred hhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 134567777889999999998754
No 59
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.09 E-value=3e-09 Score=77.42 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-Ccc-cHHHHHHHHh--
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK-- 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~-~~~~~~~~~~-- 88 (157)
...+|+++|+++++++.+++|++.++.+ +++++.+|+.+.++.. .++||+||+|++ ... +...++.+..
T Consensus 75 ~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~ 147 (199)
T PRK10909 75 YAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNG 147 (199)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCC
Confidence 3579999999999999999999999875 7999999999877532 346999999998 333 3344454443
Q ss_pred cccCCeEEEEecc
Q 031568 89 LLKVGGIAVYDNT 101 (157)
Q Consensus 89 ~L~~gG~iv~~~~ 101 (157)
+|+|+++++++..
T Consensus 148 ~l~~~~iv~ve~~ 160 (199)
T PRK10909 148 WLADEALIYVESE 160 (199)
T ss_pred CcCCCcEEEEEec
Confidence 5789999988743
No 60
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.08 E-value=1.9e-10 Score=72.97 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=66.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++.. ++.+++++|+++++++.+++..... ++.++.+|+.+. + + ++++||+|++... .+.
T Consensus 8 G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-~-----~~~sfD~v~~~~~~~~~~~ 75 (95)
T PF08241_consen 8 GRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P-F-----PDNSFDVVFSNSVLHHLED 75 (95)
T ss_dssp SHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S-S------TT-EEEEEEESHGGGSSH
T ss_pred CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c-c-----ccccccccccccceeeccC
Confidence 5566667766 8999999999999999999977543 456999998776 3 2 2689999998652 245
Q ss_pred cHHHHHHHHhcccCCeEEEE
Q 031568 79 YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++++.+.|||||.+++
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 67889999999999999975
No 61
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.07 E-value=2.7e-09 Score=76.30 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=68.6
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHH--
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERL-- 86 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~-- 86 (157)
.+...+++.||.|.+.+.++++|++..+...+.+++..|+..+++++. ..++||+||+|++.. .+.......
T Consensus 63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----~~~~FDlVflDPPy~~~l~~~~~~~~~~ 138 (187)
T COG0742 63 SRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----TREPFDLVFLDPPYAKGLLDKELALLLL 138 (187)
T ss_pred hCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----CCCcccEEEeCCCCccchhhHHHHHHHH
Confidence 446789999999999999999999999988899999999998887763 123599999999744 221122222
Q ss_pred --HhcccCCeEEEEecc
Q 031568 87 --MKLLKVGGIAVYDNT 101 (157)
Q Consensus 87 --~~~L~~gG~iv~~~~ 101 (157)
..+|+|+|+++++.-
T Consensus 139 ~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 139 EENGWLKPGALIVVEHD 155 (187)
T ss_pred HhcCCcCCCcEEEEEeC
Confidence 268999999999754
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.06 E-value=1.5e-09 Score=85.91 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=72.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-- 77 (157)
|.-+..++..+|+.+|+++|.++.+++.|++|++.++.. .+++++.+|+.+.++ .++||+|+++++..
T Consensus 240 Gvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 240 GVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFNAVLCNPPFHQQ 311 (378)
T ss_pred cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCEEEEEECcCcccC
Confidence 556667777889999999999999999999999988753 378999999865432 45799999987532
Q ss_pred ------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....++..+.+.|+|||.+.+.
T Consensus 312 ~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 312 HALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1245788888999999998875
No 63
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=6.1e-09 Score=75.27 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=68.1
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHH--
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM-- 87 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~-- 87 (157)
....+|+++|.++.+++.+++|++.++..++++++.+|+.+.++.+.+ ....||+||.||+.. .+.+.++.+.
T Consensus 70 rga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---~~~~~dvv~~DPPy~~~~~~~~l~~l~~~ 146 (189)
T TIGR00095 70 RGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---KPTFDNVIYLDPPFFNGALQALLELCENN 146 (189)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---cCCCceEEEECcCCCCCcHHHHHHHHHHC
Confidence 344589999999999999999999999877899999999988765421 123489999999643 3455565554
Q ss_pred hcccCCeEEEEecc
Q 031568 88 KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 ~~L~~gG~iv~~~~ 101 (157)
.+|+++|+++++..
T Consensus 147 ~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 147 WILEDTVLIVVEED 160 (189)
T ss_pred CCCCCCeEEEEEec
Confidence 47999999999754
No 64
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.04 E-value=1.6e-09 Score=81.27 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=71.2
Q ss_pred cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----
Q 031568 2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---- 75 (157)
Q Consensus 2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---- 75 (157)
|..+..++. ..|+.+++++|+++.+++.|+++++..+...+++++.+|+.+.. .+.+|+|++...
T Consensus 68 G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~vv~~~~l~~l 138 (247)
T PRK15451 68 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IENASMVVLNFTLQFL 138 (247)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCCCCEEehhhHHHhC
Confidence 444555555 35899999999999999999999999888778999999987641 345999887532
Q ss_pred -CcccHHHHHHHHhcccCCeEEEEecc
Q 031568 76 -KDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 76 -~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
......+++.+.+.|+|||.+++.+.
T Consensus 139 ~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 139 EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 11235688999999999999988653
No 65
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.04 E-value=1.1e-09 Score=89.97 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=71.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+++|+++|+|+.+++.|++|++.+++.++++++.+|+.+.++ .++||+|+++++.-
T Consensus 150 G~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDlIvsNPPYi~~~~ 221 (506)
T PRK01544 150 GCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDFIVSNPPYISHSE 221 (506)
T ss_pred hHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccEEEECCCCCCchh
Confidence 444555666778999999999999999999999999988889999999876432 45799999976310
Q ss_pred -------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------------------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------------------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.|..+++.+.++|+|||.++++
T Consensus 222 ~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 222 KSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred hhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1334566677899999999986
No 66
>PRK03612 spermidine synthase; Provisional
Probab=99.03 E-value=2.9e-09 Score=87.83 Aligned_cols=92 Identities=18% Similarity=0.306 Sum_probs=69.0
Q ss_pred cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHH--HHHc---CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~--~~~~---~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|..+..+++ .+. .+|++||+|+++++.++++ +... .. +++++++.+|+.++++.. .++||+|++|.
T Consensus 309 G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------~~~fDvIi~D~ 381 (521)
T PRK03612 309 GLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------AEKFDVIIVDL 381 (521)
T ss_pred cHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------CCCCCEEEEeC
Confidence 433434443 455 8999999999999999994 3321 12 368999999999988753 46899999997
Q ss_pred CCcc--------cHHHHHHHHhcccCCeEEEEec
Q 031568 75 DKDN--------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 75 ~~~~--------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+. ..++++.+.++|+|||++++..
T Consensus 382 ~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 382 PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 4321 2468889999999999999864
No 67
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.02 E-value=2.1e-09 Score=79.61 Aligned_cols=91 Identities=18% Similarity=0.350 Sum_probs=71.7
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
|..+..++... ++++|+++|+++++++.|+++++..+. ++++++.+|+.+. + + +.++||+|++... .+
T Consensus 57 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~~~~fD~V~~~~~l~~~~ 128 (231)
T TIGR02752 57 ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----DDNSFDYVTIGFGLRNVP 128 (231)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----CCCCccEEEEecccccCC
Confidence 44455566554 678999999999999999999988877 4899999999764 2 1 2568999998643 34
Q ss_pred ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+...++.+.+.|+|||.+++-+
T Consensus 129 ~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 129 DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CHHHHHHHHHHHcCcCeEEEEEE
Confidence 56778899999999999998743
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.02 E-value=4.4e-09 Score=83.28 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=75.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..+|..+|+..++++|+++.+++.|.+++...++. ++.++.+|+.+.+..+ +.+++|.|++..+.+.
T Consensus 134 G~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D~I~lnFPdPW~Kk 207 (390)
T PRK14121 134 GRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVEKIFVHFPVPWDKK 207 (390)
T ss_pred cHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCceeEEEEeCCCCcccc
Confidence 556677888889999999999999999999999999986 7999999998876544 2678999998643221
Q ss_pred ------cHHHHHHHHhcccCCeEEEE
Q 031568 79 ------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ------~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++.+.+.|+|||.+.+
T Consensus 208 rHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 208 PHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred chhhccHHHHHHHHHHHcCCCcEEEE
Confidence 25789999999999999887
No 69
>PLN02244 tocopherol O-methyltransferase
Probab=99.01 E-value=1.8e-09 Score=84.63 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=73.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|+++.+++.|+++.+..++.++++++.+|+.+. + + ++++||+|++... ...
T Consensus 130 G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~-~-----~~~~FD~V~s~~~~~h~~d 201 (340)
T PLN02244 130 GGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P-F-----EDGQFDLVWSMESGEHMPD 201 (340)
T ss_pred CHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C-C-----CCCCccEEEECCchhccCC
Confidence 55566666655 7899999999999999999999988877899999999764 2 1 2578999998532 234
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
...+++++.+.|+|||.+++.+.
T Consensus 202 ~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 202 KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEe
Confidence 56789999999999999988543
No 70
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.01 E-value=1.9e-09 Score=79.49 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=74.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~ 78 (157)
|..+..++...|+.+++++|+++++++.++++++..|+.++++++.+|+.+. + . .++||+|++.. ....
T Consensus 11 G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I~~~~~l~~~~~ 82 (224)
T smart00828 11 GSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLVFGFEVIHHIKD 82 (224)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEeehHHHHHhCCC
Confidence 4445556666788999999999999999999999999988999999998653 1 1 35799999643 1234
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.++|+|||.+++.+..
T Consensus 83 ~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 83 KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 678999999999999999987653
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.00 E-value=4.8e-09 Score=78.40 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=71.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+.++ .++||+|+++++...
T Consensus 99 G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~ 169 (251)
T TIGR03534 99 GAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLP--------GGKFDLIVSNPPYIPEAD 169 (251)
T ss_pred hHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCc--------CCceeEEEECCCCCchhh
Confidence 444555666778899999999999999999999998885 79999999977432 468999999764210
Q ss_pred --------------------------cHHHHHHHHhcccCCeEEEEec
Q 031568 79 --------------------------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 --------------------------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+..+++.+.++|+|||.+++..
T Consensus 170 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 170 IHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred hhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2356778889999999999853
No 72
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.00 E-value=2.6e-09 Score=79.99 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=69.0
Q ss_pred HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
|..|+. -.|.++|+++|.+++.++.|++|++..|+.+++++.+.|+.+ .++.- .+..+|.||+|-+. ..+.
T Consensus 55 t~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~-----~~~~~DavfLDlp~--Pw~~ 127 (247)
T PF08704_consen 55 THALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE-----LESDFDAVFLDLPD--PWEA 127 (247)
T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT------TTSEEEEEEESSS--GGGG
T ss_pred HHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc-----ccCcccEEEEeCCC--HHHH
Confidence 445554 558999999999999999999999999998899999999964 22110 13679999999763 4567
Q ss_pred HHHHHhcc-cCCeEEEE
Q 031568 83 HERLMKLL-KVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L-~~gG~iv~ 98 (157)
+..+.+.| ++||.+++
T Consensus 128 i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 128 IPHAKRALKKPGGRICC 144 (247)
T ss_dssp HHHHHHHE-EEEEEEEE
T ss_pred HHHHHHHHhcCCceEEE
Confidence 88888999 89999987
No 73
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.99 E-value=4.3e-09 Score=79.93 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=72.8
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
|..+..++.. .+.++|+++|+++.+++.|+++.+..++. +++++.+|+.+. + + ++++||+|+.+.. ..
T Consensus 89 G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~~~fD~Vi~~~v~~~~~ 160 (272)
T PRK11873 89 GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----ADNSVDVIISNCVINLSP 160 (272)
T ss_pred CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CCCceeEEEEcCcccCCC
Confidence 4444444443 36779999999999999999999998875 899999998653 2 1 2468999998753 23
Q ss_pred ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
.....++++.++|+|||.+++.++..
T Consensus 161 d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 161 DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 45678999999999999999876543
No 74
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.99 E-value=5.2e-09 Score=78.83 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=66.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------ 78 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------ 78 (157)
++.++...++.+|+++|+|+.+++.|++|++.++ ++++.+|+.+.++... .++||+|++|++.-.
T Consensus 101 ~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~ 171 (251)
T TIGR03704 101 GAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDILAANAPYVPTDAIAL 171 (251)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeEEEECCCCCCchhhhc
Confidence 3445556678899999999999999999998875 3689999987664321 357999999974210
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEec
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+..+++.+.++|+|||.+++..
T Consensus 172 ~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 172 MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2356666778999999999864
No 75
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.99 E-value=4.8e-09 Score=76.29 Aligned_cols=88 Identities=25% Similarity=0.365 Sum_probs=65.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-++.+|+..+..+|+++|++|.+++..++|++.+++.+++..+++|+.++++ .+.||.|+++.+... .+
T Consensus 113 G~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~drvim~lp~~~-~~ 183 (200)
T PF02475_consen 113 GPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKFDRVIMNLPESS-LE 183 (200)
T ss_dssp TTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-EEEEEE--TSSG-GG
T ss_pred cHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccccCEEEECChHHH-HH
Confidence 444555555557889999999999999999999999999999999999999875 468999999876543 46
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
+++.+..++++||++.+
T Consensus 184 fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 184 FLDAALSLLKEGGIIHY 200 (200)
T ss_dssp GHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhcCCcEEEC
Confidence 88899999999999863
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=6.5e-09 Score=79.76 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=67.9
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
..+..+|+++|+++.+++.|++|++.+++.+++.+..++.... ..++||+|+.+.....+..++..+.+.|
T Consensus 179 ~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~fDlVvan~~~~~l~~ll~~~~~~L 249 (288)
T TIGR00406 179 KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKADVIVANILAEVIKELYPQFSRLV 249 (288)
T ss_pred HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCceEEEEecCHHHHHHHHHHHHHHc
Confidence 3456799999999999999999999999887888888773221 1468999999876555677888899999
Q ss_pred cCCeEEEEeccc
Q 031568 91 KVGGIAVYDNTL 102 (157)
Q Consensus 91 ~~gG~iv~~~~~ 102 (157)
+|||.+++..+.
T Consensus 250 kpgG~li~sgi~ 261 (288)
T TIGR00406 250 KPGGWLILSGIL 261 (288)
T ss_pred CCCcEEEEEeCc
Confidence 999999987653
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.95 E-value=3.8e-09 Score=77.42 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=67.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..|.+++... .+++++|+++++++.|++++++.++. +++++.+|+.+.++. .++||+|++++....+
T Consensus 90 G~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~-- 157 (212)
T PRK00312 90 GYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWPA-------YAPFDRILVTAAAPEI-- 157 (212)
T ss_pred cHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCCc-------CCCcCEEEEccCchhh--
Confidence 66677666543 58999999999999999999999886 699999998654321 3689999999865443
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.+.+.+.|+|||.+++.
T Consensus 158 -~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 158 -PRALLEQLKEGGILVAP 174 (212)
T ss_pred -hHHHHHhcCCCcEEEEE
Confidence 45677899999999884
No 78
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.94 E-value=6.6e-09 Score=79.12 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=66.2
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNY 82 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~ 82 (157)
++... +++|++|.++++..+.+++.+++.|+.+++++..+|..+. .++||.|+.-. ..+++..+
T Consensus 80 ~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~~~fD~IvSi~~~Ehvg~~~~~~~ 148 (273)
T PF02353_consen 80 AAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------PGKFDRIVSIEMFEHVGRKNYPAF 148 (273)
T ss_dssp HHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------S-SEEEEESEGGGTCGGGHHHH
T ss_pred HHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------CCCCCEEEEEechhhcChhHHHHH
Confidence 33344 8999999999999999999999999999999999998764 34899998642 34678999
Q ss_pred HHHHHhcccCCeEEEEecccC
Q 031568 83 HERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~~~~~ 103 (157)
|+.+.++|+|||.++++.+..
T Consensus 149 f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 149 FRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp HHHHHHHSETTEEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEeccc
Confidence 999999999999999876543
No 79
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.93 E-value=6.3e-08 Score=74.15 Aligned_cols=113 Identities=23% Similarity=0.259 Sum_probs=84.9
Q ss_pred HHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568 5 TKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----- 78 (157)
Q Consensus 5 t~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----- 78 (157)
|..++... ..+.|++.|+++..+...++|+++.|.. ++.++..|+.+..+... ...||.|++|++...
T Consensus 100 t~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~ 173 (283)
T PF01189_consen 100 TTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP-----ESKFDRVLVDAPCSGLGTIR 173 (283)
T ss_dssp HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH-----TTTEEEEEEECSCCCGGGTT
T ss_pred eeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc-----ccccchhhcCCCccchhhhh
Confidence 55666644 4899999999999999999999999986 78888899998866543 346999999985431
Q ss_pred --------------------cHHHHHHHHhcc----cCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 031568 79 --------------------YCNYHERLMKLL----KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA 134 (157)
Q Consensus 79 --------------------~~~~~~~~~~~L----~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (157)
-.++++.+.+++ +|||.+|+..+... |+ +....++.|++
T Consensus 174 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~-----~e---------ENE~vV~~fl~--- 236 (283)
T PF01189_consen 174 RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS-----PE---------ENEEVVEKFLK--- 236 (283)
T ss_dssp TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH-----GG---------GTHHHHHHHHH---
T ss_pred hccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH-----HH---------HHHHHHHHHHH---
Confidence 135677888999 99999999887542 22 15667888854
Q ss_pred cCCCee
Q 031568 135 DDPRVQ 140 (157)
Q Consensus 135 ~~~~~~ 140 (157)
.+|++.
T Consensus 237 ~~~~~~ 242 (283)
T PF01189_consen 237 RHPDFE 242 (283)
T ss_dssp HSTSEE
T ss_pred hCCCcE
Confidence 455554
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=98.92 E-value=1.3e-08 Score=75.34 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=61.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------- 77 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------------- 77 (157)
+..+++++|+++.+++.+++|++..+. +++++.+|+.+.++ .++||+|+++++..
T Consensus 58 ~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~ 127 (223)
T PRK14967 58 GAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRPFDVVVSNPPYVPAPPDAPPSRGPARA 127 (223)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCCeeEEEECCCCCCCCcccccccChhHh
Confidence 446999999999999999999998876 58899999877532 46899999986311
Q ss_pred ---------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 ---------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ---------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+..+++.+.++|++||.+++
T Consensus 128 ~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 128 WDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred hhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 034467778899999999986
No 81
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.92 E-value=2.1e-08 Score=77.92 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
++.+|+++|+++.+++.|++|++.+++ ++++++.+|+.++.... .++||+|++|++.......+......++|
T Consensus 194 ~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~ 266 (315)
T PRK03522 194 PGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVPDLVLVNPPRRGIGKELCDYLSQMAP 266 (315)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCCeEEEECCCCCCccHHHHHHHHHcCC
Confidence 568999999999999999999999998 48999999998876532 35799999999876544434344455677
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
++++.+
T Consensus 267 ~~ivyv 272 (315)
T PRK03522 267 RFILYS 272 (315)
T ss_pred CeEEEE
Confidence 776665
No 82
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.92 E-value=2e-08 Score=79.76 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=68.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc-H
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-C 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~-~ 80 (157)
|..+..+..+.++.+|+++|+++.+++.|++|++.++++ +++++.+|+.++++.. .++||+|++|++.... .
T Consensus 243 G~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~ 315 (374)
T TIGR02085 243 GVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAPELVLVNPPRRGIGK 315 (374)
T ss_pred CccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCCCEEEECCCCCCCcH
Confidence 444444444445789999999999999999999999985 8999999998887542 3469999999986653 3
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+. .++|++++.+.
T Consensus 316 ~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 316 ELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred HHHHHHH-hcCCCeEEEEE
Confidence 4445554 57888887764
No 83
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=8.3e-09 Score=78.12 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=68.9
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHH--cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--- 75 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~--~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--- 75 (157)
|..+..++.. .+.++|+++|++++|++.|+++... .+..++++++++|+.+. + + ++++||+|++...
T Consensus 85 G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~sfD~V~~~~~l~~ 157 (261)
T PLN02233 85 GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----DDCYFDAITMGYGLRN 157 (261)
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----CCCCEeEEEEeccccc
Confidence 5445555554 3678999999999999999887542 22335799999998764 3 2 2568999998642
Q ss_pred CcccHHHHHHHHhcccCCeEEEEecc
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.++....++++.+.|+|||.+++-+.
T Consensus 158 ~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 158 VVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 23557789999999999999987554
No 84
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.92 E-value=1.8e-08 Score=75.18 Aligned_cols=92 Identities=11% Similarity=0.070 Sum_probs=70.6
Q ss_pred cccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---
Q 031568 2 HLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--- 76 (157)
Q Consensus 2 g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--- 76 (157)
|..+..++.. .|+.+++++|+++++++.|++++...+...+++++++|+.+.. .+.+|+|++....
T Consensus 65 G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 65 GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNASMVILNFTLQFL 135 (239)
T ss_pred CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCCCEEeeecchhhC
Confidence 4444445554 3789999999999999999999988776668999999997641 2458988775421
Q ss_pred --cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.+.|+|||.+++.+..
T Consensus 136 ~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 136 PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 12356889999999999999987643
No 85
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.90 E-value=7.1e-09 Score=67.24 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=63.0
Q ss_pred cccHHHHHhhC---CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---
Q 031568 2 HLPTKLFMTGN---KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--- 75 (157)
Q Consensus 2 g~st~~l~~~~---~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--- 75 (157)
|-.|..++... |..+++++|+++++++.++++....+. +++++++|+.++ +.. .++||+|++-..
T Consensus 9 G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 9 GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLVVCSGLSLH 79 (101)
T ss_dssp SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEEEE-TTGGG
T ss_pred cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEEEEcCCccC
Confidence 44455555543 458999999999999999999988666 799999999885 433 579999999322
Q ss_pred ---CcccHHHHHHHHhcccCCe
Q 031568 76 ---KDNYCNYHERLMKLLKVGG 94 (157)
Q Consensus 76 ---~~~~~~~~~~~~~~L~~gG 94 (157)
.+....+++.+.++|+|||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 2235678899999999998
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.90 E-value=1.9e-08 Score=78.30 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=70.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|.-+..++. .+.+|++||.++++++.|+++.+..+...+++++++|+.+. +. ..++||+|++-.. ...
T Consensus 143 G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l-~~------~~~~FD~Vi~~~vLeHv~d 213 (322)
T PLN02396 143 GLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL-AD------EGRKFDAVLSLEVIEHVAN 213 (322)
T ss_pred CHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh-hh------ccCCCCEEEEhhHHHhcCC
Confidence 443444443 57899999999999999999887766656899999999765 22 1568999997542 234
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
...+++.+.++|+|||.+++..+
T Consensus 214 ~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 214 PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHHHHHHHHHHcCCCcEEEEEEC
Confidence 57889999999999999998754
No 87
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.90 E-value=8.7e-09 Score=77.61 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=68.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..|..++...|+.+|+++|+++.+++.|++++ ++++++.+|+.++.+ .++||+|++.... ..
T Consensus 43 G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 43 GNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQALDLIFANASLQWLPD 108 (258)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCCccEEEEccChhhCCC
Confidence 556777777778999999999999999999864 368899999976532 4589999987642 34
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...+++.+.+.|+|||.+++.
T Consensus 109 ~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 109 HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred HHHHHHHHHHhcCCCcEEEEE
Confidence 567899999999999999884
No 88
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.89 E-value=8.7e-09 Score=80.44 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=71.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|-.+..+.++..+.+++++|+++.+++.|++|++..|+.+ ++++.+|+.+. +. ..++||.|++|++..
T Consensus 192 GtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l-~~------~~~~~D~Iv~dPPyg~~~~ 263 (329)
T TIGR01177 192 GTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL-PL------SSESVDAIATDPPYGRSTT 263 (329)
T ss_pred CCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC-Cc------ccCCCCEEEECCCCcCccc
Confidence 4445555555568899999999999999999999999875 89999999864 31 146899999997421
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+.++++.+.+.|+|||.+++-
T Consensus 264 ~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 264 AAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred ccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 1567888889999999999874
No 89
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.6e-08 Score=77.28 Aligned_cols=88 Identities=15% Similarity=0.289 Sum_probs=68.9
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c---
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D--- 77 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~--- 77 (157)
-++.++..+|..+|+++|+|+.+++.|++|++.+|+ .++.++.+|..+.+ .++||+|+++++. +
T Consensus 124 iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~---------~~~fDlIVsNPPYip~~~~~ 193 (280)
T COG2890 124 IAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL---------RGKFDLIVSNPPYIPAEDPE 193 (280)
T ss_pred HHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc---------CCceeEEEeCCCCCCCcccc
Confidence 344566677899999999999999999999999998 57878887776654 3589999998731 1
Q ss_pred ----------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 ----------------------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ----------------------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+..++..+...|+|||+++++--
T Consensus 194 ~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 194 LLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 134556667789999999998643
No 90
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.88 E-value=1e-08 Score=77.26 Aligned_cols=82 Identities=12% Similarity=0.009 Sum_probs=65.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++...|+.+|+++|+++.+++.|++. +++++.+|+.+..+ .++||+|++... .+.
T Consensus 41 G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 41 GNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCCceEEEEehhhhhCCC
Confidence 55556677777889999999999999999762 47889999976521 468999999753 234
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....++.+.+.|+|||.+++.
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEE
Confidence 577889999999999999884
No 91
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.87 E-value=1.9e-08 Score=71.85 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=64.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++.. +.+|+++|+++++++.+++|++.++. +++++.+|+.+.. .++||+|+++++..
T Consensus 31 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---------~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 31 GLVAIRLKGK--GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---------RGKFDVILFNPPYLPLED 97 (179)
T ss_pred hHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---------CCcccEEEECCCCCCCcc
Confidence 3333344443 33999999999999999999998876 5899999987642 35899999986421
Q ss_pred --------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 --------------------NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 --------------------~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+..+++.+.++|+|||.+++-.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 03457888889999999988743
No 92
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.87 E-value=2.1e-08 Score=77.94 Aligned_cols=87 Identities=16% Similarity=0.264 Sum_probs=68.7
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..|+.++...+ .++|+++|+++++++.|+++++..|.+ ++.++.+|+.+..+. .++||+|+++.....
T Consensus 92 G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~~~fD~Ii~~~g~~~-- 161 (322)
T PRK13943 92 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------FAPYDVIFVTVGVDE-- 161 (322)
T ss_pred cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------cCCccEEEECCchHH--
Confidence 666777776554 468999999999999999999999884 799999998776442 357999999876443
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..+.+.+.|+|||.+++.
T Consensus 162 -ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 162 -VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred -hHHHHHHhcCCCCEEEEE
Confidence 334567899999998873
No 93
>PRK14968 putative methyltransferase; Provisional
Probab=98.87 E-value=2.2e-08 Score=71.55 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
|..+..++.. +.+++++|+++++++.+++++...+..++ +.++.+|+.+.+. .++||+|+.+++..
T Consensus 35 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~d~vi~n~p~~~~~ 104 (188)
T PRK14968 35 GIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--------GDKFDVILFNPPYLPTE 104 (188)
T ss_pred CHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--------ccCceEEEECCCcCCCC
Confidence 4444445444 78999999999999999999998887644 8999999876432 34799999875311
Q ss_pred ---------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ---------------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ---------------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.+.|+|||.+++-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 105 EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 1345688888999999988763
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.85 E-value=2e-08 Score=80.19 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=66.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------- 77 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------- 77 (157)
+..++...|+.+|+++|+|+++++.|++|++..+. +++++++|+.+.... ..++||+|+++++.-
T Consensus 266 aiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~------~~~~FDLIVSNPPYI~~~e~~l 337 (423)
T PRK14966 266 AVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMP------SEGKWDIIVSNPPYIENGDKHL 337 (423)
T ss_pred HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccc------cCCCccEEEECCCCCCcchhhh
Confidence 33455567899999999999999999999998874 799999998764210 135799999987420
Q ss_pred ---------------------ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 ---------------------NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ---------------------~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.|..+++.+.++|+|||.++++-
T Consensus 338 ~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 338 LQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12345556667999999998753
No 95
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.85 E-value=1.7e-08 Score=73.32 Aligned_cols=86 Identities=13% Similarity=0.142 Sum_probs=65.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..|+.. +.+|+++|+++.+++.++++++..++. +++++.+|+.+.- + .++||+|++....
T Consensus 42 G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~------~~~fD~I~~~~~~~~~~~ 110 (197)
T PRK11207 42 GRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F------DGEYDFILSTVVLMFLEA 110 (197)
T ss_pred CHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c------CCCcCEEEEecchhhCCH
Confidence 4445555543 679999999999999999999988874 6899999986541 1 4579999975421
Q ss_pred cccHHHHHHHHhcccCCeEEEE
Q 031568 77 DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.....+++.+.++|+|||.+++
T Consensus 111 ~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 111 KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHHHcCCCcEEEE
Confidence 2346788999999999998654
No 96
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.84 E-value=2.5e-08 Score=78.21 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=68.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++...|+.+|+++|+++.+++.|++|++.+++. .+++.+|..+.+ .++||+|+++++..
T Consensus 208 G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~---------~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 208 GVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI---------KGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc---------CCCccEEEECCCccCCcc
Confidence 444556666778899999999999999999999998874 567888876532 46799999987532
Q ss_pred ----ccHHHHHHHHhcccCCeEEEE
Q 031568 78 ----NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ----~~~~~~~~~~~~L~~gG~iv~ 98 (157)
....++..+.++|+|||.+++
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 235678888999999999865
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=2.8e-08 Score=75.37 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=67.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|..+++++|+++.+++.|++|++ .+...+++++.+|+.+.++ .++||+|+++++..
T Consensus 120 G~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~~~ 190 (275)
T PRK09328 120 GAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--------GGRFDLIVSNPPYIPEAD 190 (275)
T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--------CCceeEEEECCCcCCcch
Confidence 3344556666788999999999999999999998 3344589999999855321 36899999975311
Q ss_pred -------------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------------------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------------------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.++|+|||.++++
T Consensus 191 ~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 191 IHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred hhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1345666777999999999985
No 98
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.83 E-value=7.2e-08 Score=77.88 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-cH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~~ 80 (157)
|..++.++. ...+|+++|+++++++.|++|++.+++. +++++.+|+.+.++.+.. ..++||+|++|++... ..
T Consensus 304 G~~sl~la~--~~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~---~~~~~D~vi~dPPr~G~~~ 377 (431)
T TIGR00479 304 GTFTLPLAK--QAKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPW---AGQIPDVLLLDPPRKGCAA 377 (431)
T ss_pred CHHHHHHHH--hCCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHh---cCCCCCEEEECcCCCCCCH
Confidence 333444443 3568999999999999999999999985 899999999987765421 1357999999998655 56
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.+++.+. .++|++++.+
T Consensus 378 ~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 378 EVLRTII-ELKPERIVYV 394 (431)
T ss_pred HHHHHHH-hcCCCEEEEE
Confidence 6666654 4888887655
No 99
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=3.8e-08 Score=74.74 Aligned_cols=89 Identities=16% Similarity=0.279 Sum_probs=75.0
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCccc
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNY 79 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~ 79 (157)
+++.|+..=+.+|+++++|++..+.+++.++..|++++++++..|..+. .++||.|+.-. .+.++
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----------~e~fDrIvSvgmfEhvg~~~~ 155 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----------EEPFDRIVSVGMFEHVGKENY 155 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----------ccccceeeehhhHHHhCcccH
Confidence 3444443239999999999999999999999999998999999999875 45699999743 45679
Q ss_pred HHHHHHHHhcccCCeEEEEecccC
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+.+|+.+.+.|+|||.++...+..
T Consensus 156 ~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 156 DDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHHHHHHhhcCCCceEEEEEecC
Confidence 999999999999999999877654
No 100
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.81 E-value=3.2e-08 Score=76.45 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=71.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|.-+..+++++|+.+++++|. |.+++.+++++++.|+.++++++.+|+.+. . .+.+|+|++... .
T Consensus 161 G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~-------~~~~D~v~~~~~lh~~~~ 230 (306)
T TIGR02716 161 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPEADAVLFCRILYSANE 230 (306)
T ss_pred hHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C-------CCCCCEEEeEhhhhcCCh
Confidence 444455677889999999998 899999999999999988999999998753 1 234799886542 1
Q ss_pred cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
.....+++.+.+.|+|||.+++.+..+
T Consensus 231 ~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 231 QLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 223468999999999999998876654
No 101
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=1e-07 Score=70.63 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=79.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE---cCCCc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i---D~~~~ 77 (157)
||-+++-+|..+|...+++||+....+..|.+.+.+.++. ++.++++||.+.+..+. ++++.|-|++ |++..
T Consensus 59 ~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I~i~FPDPWpK 133 (227)
T COG0220 59 MGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKIYINFPDPWPK 133 (227)
T ss_pred CCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEEEEECCCCCCC
Confidence 4666777888999999999999999999999999999996 89999999999999875 2458999987 44321
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
-++.+++.+.+.|+|||.|.+.
T Consensus 134 kRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 134 KRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred ccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 2578899999999999999873
No 102
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.80 E-value=7e-08 Score=76.74 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
++.++...+..+|+++|+++.+++.+++|++.+++. +++++.+|+.+.+.. .++||+|++|+. .....+++
T Consensus 72 ~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~V~lDP~-Gs~~~~l~ 142 (382)
T PRK04338 72 GIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDVVDIDPF-GSPAPFLD 142 (382)
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCEEEECCC-CCcHHHHH
Confidence 344455545569999999999999999999999986 678999999887652 246999999985 33467788
Q ss_pred HHHhcccCCeEEEEe---cccCCcccc----CCCCCCCCCcccchHHHHHHHHHHhhc
Q 031568 85 RLMKLLKVGGIAVYD---NTLWGGTVA----VPEEQVPDHFRGSSRQAILDLNRSLAD 135 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (157)
.+...+++||++.+. ...+.|... .+.+..|.+..-.+.-.+|-++..+..
T Consensus 143 ~al~~~~~~gilyvSAtD~~~L~g~y~~~~~~~yd~fP~~~~~~~E~glRill~~i~r 200 (382)
T PRK04338 143 SAIRSVKRGGLLCVTATDTAPLCGAYPKSCLRKYGAVPLKTEFYHEMGLRILIGYIAR 200 (382)
T ss_pred HHHHHhcCCCEEEEEecCchhhcCCChHHHHHHhcCcccCCcchhHHHHHHHHHHHHH
Confidence 888889999999873 222323210 112223433322245567777766554
No 103
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.80 E-value=1.1e-09 Score=70.75 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|.-+..++..+|..+++++|+++.+++.|++.+...+.. +......+..+..... ..++||+|++-.. .+.
T Consensus 8 G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~V~~~~vl~~l~~ 81 (99)
T PF08242_consen 8 GRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD-----PPESFDLVVASNVLHHLED 81 (99)
T ss_dssp S-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE-TTS--S-
T ss_pred hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc-----cccccceehhhhhHhhhhh
Confidence 445556777779999999999999999999999887653 3344444433333211 1258999997642 245
Q ss_pred cHHHHHHHHhcccCCeEE
Q 031568 79 YCNYHERLMKLLKVGGIA 96 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~i 96 (157)
...+++.+.++|+|||+|
T Consensus 82 ~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 82 IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 678899999999999986
No 104
>PRK04266 fibrillarin; Provisional
Probab=98.79 E-value=4.7e-08 Score=72.54 Aligned_cols=91 Identities=13% Similarity=-0.004 Sum_probs=66.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-cH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-YC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~~ 80 (157)
|..|..++...+.++|+++|+++++++.++++++.. .++.++.+|+.+...... ..++||+||.|...+. ..
T Consensus 84 G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~----l~~~~D~i~~d~~~p~~~~ 156 (226)
T PRK04266 84 GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH----VVEKVDVIYQDVAQPNQAE 156 (226)
T ss_pred CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh----ccccCCEEEECCCChhHHH
Confidence 666777777666789999999999999888877653 478999999865211110 1356999999865322 23
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+|||.+++.
T Consensus 157 ~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 157 IAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 3578889999999999984
No 105
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.79 E-value=4.2e-08 Score=71.17 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=63.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+.+++.. +.+|+++|+++.+++.++++++..++. +++..+|+... + + .++||+|++... .
T Consensus 42 G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~------~~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 42 GRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L------NEDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c------cCCCCEEEEecccccCCH
Confidence 5555556553 679999999999999999999888773 77777887542 1 2 357999987532 1
Q ss_pred cccHHHHHHHHhcccCCeEEEE
Q 031568 77 DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.....+++.+.++|+|||.+++
T Consensus 110 ~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 110 GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred HHHHHHHHHHHHHhCCCcEEEE
Confidence 2346789999999999998554
No 106
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.78 E-value=9e-08 Score=75.87 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=81.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 93 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g 93 (157)
..+|+++|++|++++.+++|++.++.. +++++++|+...+... ..+||+|++|+. ....++++.+.+.+++|
T Consensus 69 a~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvIdlDPf-Gs~~~fld~al~~~~~~ 140 (374)
T TIGR00308 69 VREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVIDIDPF-GTPAPFVDSAIQASAER 140 (374)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEEEeCCC-CCcHHHHHHHHHhcccC
Confidence 468999999999999999999999875 7999999999998754 457999999994 34457899999999999
Q ss_pred eEEEEe---cccCCccccCC----CCCCCCCcccchHHHHHHHHHHhhc
Q 031568 94 GIAVYD---NTLWGGTVAVP----EEQVPDHFRGSSRQAILDLNRSLAD 135 (157)
Q Consensus 94 G~iv~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (157)
|++.+- ...+.|..... ....|.+..-.+.-.+|-++..+..
T Consensus 141 glL~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r 189 (374)
T TIGR00308 141 GLLLVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKR 189 (374)
T ss_pred CEEEEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHH
Confidence 998773 44444432110 0111222221244567777766654
No 107
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.77 E-value=2.6e-08 Score=70.05 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=49.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|-.|..+|.. ..+|++||+||..++.|+.|++-.|+.++|++++||+.+.++.+.. ...||.||++++.
T Consensus 11 GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~vFlSPPW 79 (163)
T PF09445_consen 11 GGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVVFLSPPW 79 (163)
T ss_dssp SHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEEEE---B
T ss_pred CHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEEEECCCC
Confidence 4456667765 5789999999999999999999999999999999999998776531 1228999999854
No 108
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.76 E-value=8.9e-09 Score=75.66 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=70.5
Q ss_pred Cccc-HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 1 MHLP-TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 1 ~g~s-t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|||. |++-|......+|+++|.||..+++|.-|=..-++. .+|+++.||+.+.++.+. +++||.|+-|++.-
T Consensus 143 ~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~-----D~sfDaIiHDPPRfS 217 (287)
T COG2521 143 TGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD-----DESFDAIIHDPPRFS 217 (287)
T ss_pred cCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC-----ccccceEeeCCCccc
Confidence 4554 333444544459999999999999998765444442 358999999999999884 67899999998632
Q ss_pred -----ccHHHHHHHHhcccCCeEEEE
Q 031568 78 -----NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -----~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.-.++++++.+.|+|||.+.-
T Consensus 218 ~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 218 LAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred hhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 135788999999999999864
No 109
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.76 E-value=3.5e-07 Score=68.81 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=60.3
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
.....+|+++|+++.+++.|++|++.+++.+++.+..++ .+||+|+.+.....+..+++.+.+.|
T Consensus 139 ~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~---------------~~fD~Vvani~~~~~~~l~~~~~~~L 203 (250)
T PRK00517 139 KLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD---------------LKADVIVANILANPLLELAPDLARLL 203 (250)
T ss_pred HcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC---------------CCcCEEEEcCcHHHHHHHHHHHHHhc
Confidence 334457999999999999999999998885555543321 26999998876555667888899999
Q ss_pred cCCeEEEEeccc
Q 031568 91 KVGGIAVYDNTL 102 (157)
Q Consensus 91 ~~gG~iv~~~~~ 102 (157)
+|||.+++..+.
T Consensus 204 kpgG~lilsgi~ 215 (250)
T PRK00517 204 KPGGRLILSGIL 215 (250)
T ss_pred CCCcEEEEEECc
Confidence 999999987543
No 110
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.75 E-value=1.4e-07 Score=76.54 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=68.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-++.++.. ..+|+++|+++++++.|++|++.+++. +++++.+|+.+.+..... ..++||+|++|++.....+
T Consensus 309 G~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~fD~Vi~dPPr~g~~~ 382 (443)
T PRK13168 309 GNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGFDKVLLDPPRAGAAE 382 (443)
T ss_pred CHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCCCEEEECcCCcChHH
Confidence 4334444443 479999999999999999999999885 799999999887643210 1357999999998776666
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+ ++|++++.+.
T Consensus 383 ~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 383 VMQALAK-LGPKRIVYVS 399 (443)
T ss_pred HHHHHHh-cCCCeEEEEE
Confidence 7765554 6888877664
No 111
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.74 E-value=7.2e-08 Score=71.24 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~ 89 (157)
-+++|+++|+++++++.|+.+..+.|+. +++....+.+.... .++||.|.+-- ..++...++..|.++
T Consensus 80 ~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~l 150 (243)
T COG2227 80 LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKL 150 (243)
T ss_pred CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHH
Confidence 4799999999999999999999999884 88888888876542 47999999753 233556789999999
Q ss_pred ccCCeEEEEecccC
Q 031568 90 LKVGGIAVYDNTLW 103 (157)
Q Consensus 90 L~~gG~iv~~~~~~ 103 (157)
+||||.++..++..
T Consensus 151 vkP~G~lf~STinr 164 (243)
T COG2227 151 VKPGGILFLSTINR 164 (243)
T ss_pred cCCCcEEEEecccc
Confidence 99999999987653
No 112
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=4.3e-07 Score=69.59 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=66.0
Q ss_pred HHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 8 FMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 8 l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
+|+ .....+++++|+||.+++.|++|++.+++...++.-..+..+... .++||+|+.+--.+-...+...+
T Consensus 178 IAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~ 249 (300)
T COG2264 178 IAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDI 249 (300)
T ss_pred HHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--------cCcccEEEehhhHHHHHHHHHHH
Confidence 444 556778999999999999999999999997544444444444321 46899999876444455667778
Q ss_pred HhcccCCeEEEEeccc
Q 031568 87 MKLLKVGGIAVYDNTL 102 (157)
Q Consensus 87 ~~~L~~gG~iv~~~~~ 102 (157)
.++++|||.++...++
T Consensus 250 ~~~lkpgg~lIlSGIl 265 (300)
T COG2264 250 KRLLKPGGRLILSGIL 265 (300)
T ss_pred HHHcCCCceEEEEeeh
Confidence 8999999999998765
No 113
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=74.09 Aligned_cols=81 Identities=26% Similarity=0.297 Sum_probs=69.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 93 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g 93 (157)
..+|+++|+||.+++..++|++.+++..+++.++||+.+..+.+ +.+|.|++..... ..+++..+.+.+++|
T Consensus 211 ~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~ 282 (341)
T COG2520 211 RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-------GVADRIIMGLPKS-AHEFLPLALELLKDG 282 (341)
T ss_pred CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcC
Confidence 44499999999999999999999999988999999999998742 6799999987653 366888999999999
Q ss_pred eEEEEeccc
Q 031568 94 GIAVYDNTL 102 (157)
Q Consensus 94 G~iv~~~~~ 102 (157)
|+|.+-...
T Consensus 283 g~iHyy~~~ 291 (341)
T COG2520 283 GIIHYYEFV 291 (341)
T ss_pred cEEEEEecc
Confidence 999986543
No 114
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.71 E-value=1.9e-07 Score=67.86 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=74.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~- 77 (157)
|-.+..+|..+|+..++++|+....+..+.+.+.+.++. ++.++.+|+...+..+. +++++|.|++. ++..
T Consensus 29 G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~----~~~~v~~i~i~FPDPWpK~ 103 (195)
T PF02390_consen 29 GEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLF----PPGSVDRIYINFPDPWPKK 103 (195)
T ss_dssp SHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHS----TTTSEEEEEEES-----SG
T ss_pred CHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcc----cCCchheEEEeCCCCCccc
Confidence 555667888999999999999999999999999999985 89999999999888774 25789999985 3211
Q ss_pred -------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
-..++++.+.+.|+|||.|.+
T Consensus 104 rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 104 RHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp GGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred chhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 246789999999999999876
No 115
>PRK06922 hypothetical protein; Provisional
Probab=98.71 E-value=1.3e-07 Score=79.12 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=69.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|..+..++...|+++++++|+++.+++.|+++....+ .+++++.+|+.+.-..+ ++++||+|++...
T Consensus 430 G~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f-----edeSFDvVVsn~vLH~L~s 502 (677)
T PRK06922 430 GVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF-----EKESVDTIVYSSILHELFS 502 (677)
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc-----CCCCEEEEEEchHHHhhhh
Confidence 4444556667799999999999999999999886655 36889999998742112 2568999987531
Q ss_pred ----------CcccHHHHHHHHhcccCCeEEEEecc
Q 031568 76 ----------KDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 76 ----------~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
......+++.+.+.|+|||.+++.+.
T Consensus 503 yIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 503 YIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 12345778889999999999998543
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.71 E-value=8.6e-08 Score=70.87 Aligned_cols=92 Identities=14% Similarity=0.229 Sum_probs=71.6
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
|..+..++...+ ..+++++|+++.+++.+++++...+...+++++.+|+.+.. . ..++||+|++... ..
T Consensus 63 G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~~D~I~~~~~l~~~~ 135 (239)
T PRK00216 63 GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNSFDAVTIAFGLRNVP 135 (239)
T ss_pred CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCCccEEEEecccccCC
Confidence 444555666555 79999999999999999999987766668999999997642 1 1468999997642 33
Q ss_pred ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....++.+.+.|+|||.+++-+
T Consensus 136 ~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 136 DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CHHHHHHHHHHhccCCcEEEEEE
Confidence 56778999999999999987643
No 117
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.70 E-value=6.7e-08 Score=73.28 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=67.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-C----CC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-A----DK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-~----~~ 76 (157)
|..+..++.. .+.+|+++|+++.+++.|+++... .++++++.+|+.+. + + ++++||+|++- . ..
T Consensus 64 G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~-----~~~~FD~V~s~~~l~h~~~ 132 (263)
T PTZ00098 64 GGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F-----PENTFDMIYSRDAILHLSY 132 (263)
T ss_pred ChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C-----CCCCeEEEEEhhhHHhCCH
Confidence 4455556554 367999999999999999997654 35799999998743 1 1 25689999983 2 11
Q ss_pred cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.++|+|||.+++.+..
T Consensus 133 ~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 133 ADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 24567899999999999999986553
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.69 E-value=3.1e-07 Score=72.70 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=60.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCC---------CCCceeEEEEcCCCccc-HHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE---------NEGSFDYAFVDADKDNY-CNY 82 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~---------~~~~fD~I~iD~~~~~~-~~~ 82 (157)
...+|++||.++.+++.|++|++.++++ +++++.+|+.++++.+.+... ...+||+||+|++.... ...
T Consensus 227 ~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~ 305 (362)
T PRK05031 227 NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDET 305 (362)
T ss_pred hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHH
Confidence 3569999999999999999999999985 899999999998876421000 01259999999986543 444
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
++.+.+ +++++.+
T Consensus 306 l~~l~~---~~~ivyv 318 (362)
T PRK05031 306 LKLVQA---YERILYI 318 (362)
T ss_pred HHHHHc---cCCEEEE
Confidence 454443 5666655
No 119
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.69 E-value=2.9e-08 Score=76.23 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=64.8
Q ss_pred HHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+.+++ +....+|+++|+||.+++.|++|++.+|+.+++.+. ...+. ..++||+|+.+-...-...+.
T Consensus 174 ILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~dlvvANI~~~vL~~l~ 242 (295)
T PF06325_consen 174 ILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKFDLVVANILADVLLELA 242 (295)
T ss_dssp HHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-EEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccCCEEEECCCHHHHHHHH
Confidence 344444 566779999999999999999999999999877664 11111 146899999886544455666
Q ss_pred HHHHhcccCCeEEEEecccC
Q 031568 84 ERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+.++|+|||.++...++.
T Consensus 243 ~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 243 PDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp HHCHHHEEEEEEEEEEEEEG
T ss_pred HHHHHhhCCCCEEEEccccH
Confidence 67778999999999987763
No 120
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.68 E-value=5.5e-08 Score=70.02 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=61.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|.=|..|+..+ .+++++|+++.+++.||+.++.. ++|+++++|..+..+ .++||+|++---
T Consensus 55 G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 55 GVLTERLAPRC--DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp SHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSS
T ss_pred cHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCC
Confidence 44466666653 68999999999999999988643 489999999988754 679999998641
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
......+++.+...|+|||.+|+-.
T Consensus 122 ~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 122 AEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1234456778889999999999854
No 121
>PRK08317 hypothetical protein; Provisional
Probab=98.66 E-value=4.7e-07 Score=66.75 Aligned_cols=94 Identities=16% Similarity=0.232 Sum_probs=69.7
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
|..+..++... |.++++++|.++.+++.++++... ...+++++.+|+.+. + + ..++||+|++... ..
T Consensus 31 G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~ 101 (241)
T PRK08317 31 GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL-P-F-----PDGSFDAVRSDRVLQHLE 101 (241)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC-C-C-----CCCCceEEEEechhhccC
Confidence 44444555555 788999999999999999998432 335799999998653 2 1 2468999998642 23
Q ss_pred ccHHHHHHHHhcccCCeEEEEecccCC
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTLWG 104 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~~~ 104 (157)
.....++.+.+.|+|||.+++....+.
T Consensus 102 ~~~~~l~~~~~~L~~gG~l~~~~~~~~ 128 (241)
T PRK08317 102 DPARALAEIARVLRPGGRVVVLDTDWD 128 (241)
T ss_pred CHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 567789999999999999998765443
No 122
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.66 E-value=8.6e-08 Score=67.44 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=58.8
Q ss_pred EEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcccC
Q 031568 18 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKV 92 (157)
Q Consensus 18 ~~ve~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L~~ 92 (157)
+++|++++|++.|++..+.. +...+++++++|+.+. +. ++++||+|++... ..+....++++.+.|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 48999999999998776532 2234799999999764 32 2568999998653 23467789999999999
Q ss_pred CeEEEEecc
Q 031568 93 GGIAVYDNT 101 (157)
Q Consensus 93 gG~iv~~~~ 101 (157)
||.+++-+.
T Consensus 74 GG~l~i~d~ 82 (160)
T PLN02232 74 GSRVSILDF 82 (160)
T ss_pred CeEEEEEEC
Confidence 999987543
No 123
>PRK00536 speE spermidine synthase; Provisional
Probab=98.66 E-value=4.8e-07 Score=68.43 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=58.9
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+.|. +|+.||+|++.++.+++++... ++ ++|++++. .+.+. ..++||+|++|.. ..+++++.+.
T Consensus 92 kh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~-----~~~~fDVIIvDs~--~~~~fy~~~~ 158 (262)
T PRK00536 92 KYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDL-----DIKKYDLIICLQE--PDIHKIDGLK 158 (262)
T ss_pred CcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhc-----cCCcCCEEEEcCC--CChHHHHHHH
Confidence 4454 9999999999999999976653 23 47899986 12221 1368999999964 2367889999
Q ss_pred hcccCCeEEEEec
Q 031568 88 KLLKVGGIAVYDN 100 (157)
Q Consensus 88 ~~L~~gG~iv~~~ 100 (157)
+.|+|||+++...
T Consensus 159 ~~L~~~Gi~v~Qs 171 (262)
T PRK00536 159 RMLKEDGVFISVA 171 (262)
T ss_pred HhcCCCcEEEECC
Confidence 9999999999853
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.65 E-value=2e-07 Score=76.14 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=68.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|+++++++.|+++.. +...+++++.+|+.+.. + ++++||+|++... ...
T Consensus 278 G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-----~~~~fD~I~s~~~l~h~~d 347 (475)
T PLN02336 278 GGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-----PDNSFDVIYSRDTILHIQD 347 (475)
T ss_pred CHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-----CCCCEEEEEECCcccccCC
Confidence 33334455443 7899999999999999999875 34457999999987631 1 2468999998642 234
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++.+..
T Consensus 348 ~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 348 KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred HHHHHHHHHHHcCCCeEEEEEEec
Confidence 578899999999999999987543
No 125
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.64 E-value=1.5e-07 Score=71.49 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=63.6
Q ss_pred ccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHH-HcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 3 LPTKLFMTG-NKILQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 3 ~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~-~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
+|.+.+++. .+++.|+++|+||++++.+++-++ ..|++.+++++.+|+.+....+ ..||.||+-+-..
T Consensus 134 lT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~DvV~lAalVg~~~ 206 (276)
T PF03059_consen 134 LTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEYDVVFLAALVGMDA 206 (276)
T ss_dssp HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------SEEEE-TT-S---
T ss_pred hHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccCCEEEEhhhccccc
Confidence 556666653 468899999999999999999888 6788889999999998754332 4799999987443
Q ss_pred -ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.-.++++.+.+.++||+.+++..
T Consensus 207 e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 207 EPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred chHHHHHHHHHhhCCCCcEEEEec
Confidence 56789999999999999999964
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2e-07 Score=71.14 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=68.9
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----c-
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----Y- 79 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----~- 79 (157)
-+.+++.+|..+++.+|+|..+++.||+|++.++++. .+++.+|..+-. .++||+|+++++.+. .
T Consensus 173 g~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~~v---------~~kfd~IisNPPfh~G~~v~~ 242 (300)
T COG2813 173 GLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYEPV---------EGKFDLIISNPPFHAGKAVVH 242 (300)
T ss_pred HHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccccc---------cccccEEEeCCCccCCcchhH
Confidence 3557778899999999999999999999999998863 478888887754 348999999986432 2
Q ss_pred ---HHHHHHHHhcccCCeEEEE
Q 031568 80 ---CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ---~~~~~~~~~~L~~gG~iv~ 98 (157)
.+++..+.+.|++||-|-+
T Consensus 243 ~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 243 SLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred HHHHHHHHHHHHhhccCCEEEE
Confidence 3678888999999998754
No 127
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.63 E-value=2.2e-07 Score=71.21 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++. .+.+|+++|+++.+++.++++++..++ ++++..+|+.+.. + .++||+|++... .
T Consensus 132 G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 132 GRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cCCccEEEEcchhhhCCH
Confidence 444444554 368999999999999999999998887 6888888886531 1 468999987642 2
Q ss_pred cccHHHHHHHHhcccCCeEEEE
Q 031568 77 DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.....+++.+.+.|+|||++++
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEE
Confidence 3456789999999999999654
No 128
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.62 E-value=2.5e-07 Score=67.73 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=69.2
Q ss_pred cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCc
Q 031568 2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~ 77 (157)
|..+..++...+. ++++++|+++.+++.+++++. ...+++++.+|+.+.. . ..++||+|++.. ...
T Consensus 51 G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~~D~i~~~~~~~~~~ 120 (223)
T TIGR01934 51 GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNSFDAVTIAFGLRNVT 120 (223)
T ss_pred ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCcEEEEEEeeeeCCcc
Confidence 5556667766665 799999999999999999876 3357999999998743 1 146799998754 233
Q ss_pred ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....++.+.+.|+|||.+++.+.
T Consensus 121 ~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 121 DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 467788999999999999987543
No 129
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.62 E-value=7.4e-07 Score=56.30 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=63.4
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----ccHHHHHHHH
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD----NYCNYHERLM 87 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----~~~~~~~~~~ 87 (157)
.+..+++++|.++..+..+++.....+ ..+++++.+|..+.... ..++||+|+++.... ....+++.+.
T Consensus 19 ~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~~~~~~~~~~~~~~~~l~~~~ 91 (107)
T cd02440 19 GPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVIISDPPLHHLVEDLARFLEEAR 91 (107)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEEEccceeehhhHHHHHHHHHH
Confidence 468899999999999999986444433 35799999999887541 146799999987532 3467788888
Q ss_pred hcccCCeEEEEe
Q 031568 88 KLLKVGGIAVYD 99 (157)
Q Consensus 88 ~~L~~gG~iv~~ 99 (157)
+.+++||.+++.
T Consensus 92 ~~l~~~g~~~~~ 103 (107)
T cd02440 92 RLLKPGGVLVLT 103 (107)
T ss_pred HHcCCCCEEEEE
Confidence 999999999874
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.60 E-value=4.1e-07 Score=80.08 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=69.3
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC---------------CCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV---------------DHKINFIESEALSVLDQLLKYSENEGSF 67 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~l~~~~~~~~~~~~f 67 (157)
.-++.++..+|..+|+++|+++++++.|++|++.+++ .++++++++|+.+.++.. ..+|
T Consensus 131 ~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~------~~~f 204 (1082)
T PLN02672 131 WISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN------NIEL 204 (1082)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc------CCce
Confidence 3345566677889999999999999999999998653 257999999998765321 2379
Q ss_pred eEEEEcCCC-------------c----------------------------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 68 DYAFVDADK-------------D----------------------------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 68 D~I~iD~~~-------------~----------------------------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
|+|+.+++. . .|..+++.+.++|+|||.++++--
T Consensus 205 DlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 205 DRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred EEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 999987530 0 023455566679999999998643
No 131
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.60 E-value=3e-07 Score=71.97 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=66.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++...++.+++++|.++++++.|+++... .+++++.+|+.+. + + +.++||+|++... ...
T Consensus 125 G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFDvVIs~~~L~~~~d 193 (340)
T PLN02490 125 GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYADRYVSAGSIEYWPD 193 (340)
T ss_pred cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCceeEEEEcChhhhCCC
Confidence 44455566666778999999999999999997642 3688999999763 2 1 2568999998642 224
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....++++.+.|+|||.+++-
T Consensus 194 ~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 194 PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred HHHHHHHHHHhcCCCcEEEEE
Confidence 467899999999999998763
No 132
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=6.6e-07 Score=72.19 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=70.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC- 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~- 80 (157)
|+.|.-+..+....+|+++|+++++++.|++|++.+|+. +++++.+++.++.+... ....+|.|++|++.....
T Consensus 303 GvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~ 377 (432)
T COG2265 303 GVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFTPAWW----EGYKPDVVVVDPPRAGADR 377 (432)
T ss_pred CCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHhhhcc----ccCCCCEEEECCCCCCCCH
Confidence 455555555556899999999999999999999999997 59999999999987652 135799999999887766
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
+.++.+. .++|..++.+
T Consensus 378 ~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 378 EVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred HHHHHHH-hcCCCcEEEE
Confidence 5566554 4555555544
No 133
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.58 E-value=4.7e-07 Score=67.53 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCc--EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~--i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~~ 88 (157)
+++|+.+|+||+|++.+++...+.++.++ +.++.+||.+. | + ++.+||+..+-... ...+..+++++|
T Consensus 130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F-----dd~s~D~yTiafGIRN~th~~k~l~EAYR 202 (296)
T KOG1540|consen 130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F-----DDDSFDAYTIAFGIRNVTHIQKALREAYR 202 (296)
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C-----CCCcceeEEEecceecCCCHHHHHHHHHH
Confidence 38999999999999999999888777544 99999999764 5 3 36889999887643 346778999999
Q ss_pred cccCCeEEEE
Q 031568 89 LLKVGGIAVY 98 (157)
Q Consensus 89 ~L~~gG~iv~ 98 (157)
.|||||++.+
T Consensus 203 VLKpGGrf~c 212 (296)
T KOG1540|consen 203 VLKPGGRFSC 212 (296)
T ss_pred hcCCCcEEEE
Confidence 9999999886
No 134
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=3.9e-07 Score=66.02 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=65.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCcccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVD---ADKDNYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~~~~~~~~~~~~ 88 (157)
|..+|+++|.+|.|-+++.+.+++... .+++ ++++++.+. +++. +++||.|+.- +......+.++...+
T Consensus 98 p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~DtVV~TlvLCSve~~~k~L~e~~r 170 (252)
T KOG4300|consen 98 PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYDTVVCTLVLCSVEDPVKQLNEVRR 170 (252)
T ss_pred CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCeeeEEEEEEEeccCCHHHHHHHHHH
Confidence 688999999999999999999988754 3666 999998764 5553 7899999753 345567888999999
Q ss_pred cccCCeEEEE
Q 031568 89 LLKVGGIAVY 98 (157)
Q Consensus 89 ~L~~gG~iv~ 98 (157)
+|+|||++++
T Consensus 171 lLRpgG~iif 180 (252)
T KOG4300|consen 171 LLRPGGRIIF 180 (252)
T ss_pred hcCCCcEEEE
Confidence 9999999987
No 135
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.57 E-value=1.1e-07 Score=69.40 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=72.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~~ 88 (157)
-.+|..||..++.++.|++++... .....++++.-.+++.|. .++||+|++-= .-....++|+.|..
T Consensus 78 f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~ 149 (218)
T PF05891_consen 78 FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQ 149 (218)
T ss_dssp -SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CCcEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence 568999999999999999877552 122467888888888763 46899999731 11246789999999
Q ss_pred cccCCeEEEE-ecccCCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 031568 89 LLKVGGIAVY-DNTLWGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 141 (157)
Q Consensus 89 ~L~~gG~iv~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (157)
.|+|+|+|++ +|+...+. +.++++++ .++..+.|.+. .+..++..
T Consensus 150 ~L~~~G~IvvKEN~~~~~~~~~D~~DsS-------vTRs~~~~~~l-F~~AGl~~ 196 (218)
T PF05891_consen 150 ALKPNGVIVVKENVSSSGFDEFDEEDSS-------VTRSDEHFREL-FKQAGLRL 196 (218)
T ss_dssp HEEEEEEEEEEEEEESSSEEEEETTTTE-------EEEEHHHHHHH-HHHCT-EE
T ss_pred hCcCCcEEEEEecCCCCCCcccCCccCe-------eecCHHHHHHH-HHHcCCEE
Confidence 9999999999 57777775 56666542 44445555443 33345443
No 136
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.55 E-value=3.3e-07 Score=67.68 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=68.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++...+..+++++|+++.+++.+++.+. ++++++.+|+.+.. + .+++||+|++.... ..
T Consensus 46 G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 46 GYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred cHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCceeEEEEhhhhhhccC
Confidence 4456667777788899999999999999988653 37889999987642 1 25689999987532 24
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....++.+.+.|+|||.+++...
T Consensus 114 ~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 114 LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeC
Confidence 56788999999999999998643
No 137
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.53 E-value=1.6e-06 Score=68.38 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=59.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-CC---C-----CCceeEEEEcCCCcc-cHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-SE---N-----EGSFDYAFVDADKDN-YCNYH 83 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~---~-----~~~fD~I~iD~~~~~-~~~~~ 83 (157)
..+|++||+++++++.|++|++.++++ +++++.+|+.++++...+. .. . ...||+||+|++... ....+
T Consensus 219 ~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l 297 (353)
T TIGR02143 219 FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTC 297 (353)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHH
Confidence 359999999999999999999999985 7999999999988642100 00 0 123899999998655 34455
Q ss_pred HHHHhcccCCeEEEEe
Q 031568 84 ERLMKLLKVGGIAVYD 99 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~ 99 (157)
+.+.+ +++++.+.
T Consensus 298 ~~l~~---~~~ivYvs 310 (353)
T TIGR02143 298 KLVQA---YERILYIS 310 (353)
T ss_pred HHHHc---CCcEEEEE
Confidence 55543 66666653
No 138
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.51 E-value=1.1e-06 Score=68.24 Aligned_cols=93 Identities=12% Similarity=-0.007 Sum_probs=64.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|+-+..++.. ....|+++|+++.++.+++..-+..+...++.+..+++.+. +. ..+||+||+.+. ...
T Consensus 133 G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~FD~V~s~gvL~H~~d 203 (314)
T TIGR00452 133 GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYAFDTVFSMGVLYHRKS 203 (314)
T ss_pred cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCCcCEEEEcchhhccCC
Confidence 3333334433 33589999999999987655433333345788888887654 21 357999998752 335
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+..+.+.|+|||.+++.....
T Consensus 204 p~~~L~el~r~LkpGG~Lvletl~i 228 (314)
T TIGR00452 204 PLEHLKQLKHQLVIKGELVLETLVI 228 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEEEe
Confidence 5678999999999999999876543
No 139
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.50 E-value=4.8e-07 Score=66.04 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=56.4
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
.|..+++. ...|++||+||..++.|++|++-.|+.+||+|++||..+....++.. ...+|+||.-+++
T Consensus 108 ntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~~~~vf~sppw 175 (263)
T KOG2730|consen 108 NTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIKYDCVFLSPPW 175 (263)
T ss_pred hHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hheeeeeecCCCC
Confidence 45555553 67899999999999999999999999999999999999988766431 3458899988754
No 140
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.49 E-value=1.2e-06 Score=68.31 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=66.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|.-+..++.. ...+|+++|.++.++.+++..-+..+...+++++.+|+.+. +. .++||+|++-.. ...
T Consensus 134 G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~FD~V~s~~vl~H~~d 204 (322)
T PRK15068 134 GYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAFDTVFSMGVLYHRRS 204 (322)
T ss_pred cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCcCEEEECChhhccCC
Confidence 4334444444 34479999999999877655444444345799999998754 21 467999998542 235
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....++.+.+.|+|||.++++....
T Consensus 205 p~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 205 PLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 6788999999999999999876543
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.48 E-value=2.4e-06 Score=63.32 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=63.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L 90 (157)
+.+++++|+++.+++.+++++...+. +++++.+++.+..... .++||+|++... ......+++.+.+.|
T Consensus 70 ~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L 141 (233)
T PRK05134 70 GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLV 141 (233)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHc
Confidence 67899999999999999999987765 5888999988765321 468999988532 234567889999999
Q ss_pred cCCeEEEEec
Q 031568 91 KVGGIAVYDN 100 (157)
Q Consensus 91 ~~gG~iv~~~ 100 (157)
+|||.+++..
T Consensus 142 ~~gG~l~v~~ 151 (233)
T PRK05134 142 KPGGLVFFST 151 (233)
T ss_pred CCCcEEEEEe
Confidence 9999998864
No 142
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.43 E-value=1.6e-06 Score=69.12 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCccc
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNY 79 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~ 79 (157)
+..++.. .+.+|+++|+++++++.|+++++ ++ .+++..+|..+. .++||.|+.-. +...+
T Consensus 182 a~~la~~-~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~~fD~Ivs~~~~ehvg~~~~ 246 (383)
T PRK11705 182 ARYAAEH-YGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NGQFDRIVSVGMFEHVGPKNY 246 (383)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CCCCCEEEEeCchhhCChHHH
Confidence 3334433 47899999999999999999885 33 488888887643 35799998643 23456
Q ss_pred HHHHHHHHhcccCCeEEEEeccc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
..+++.+.++|+|||.+++..+.
T Consensus 247 ~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 247 RTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred HHHHHHHHHHcCCCcEEEEEEcc
Confidence 78899999999999999986543
No 143
>PTZ00146 fibrillarin; Provisional
Probab=98.42 E-value=2.7e-06 Score=65.14 Aligned_cols=91 Identities=14% Similarity=-0.021 Sum_probs=61.6
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..|..++... +.++|++||+++.+.+...+..+.. .+|.++.+|+..... +. ...++||+||+|...+...
T Consensus 144 G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~---~~~~~vDvV~~Dva~pdq~ 216 (293)
T PTZ00146 144 GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YR---MLVPMVDVIFADVAQPDQA 216 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hh---cccCCCCEEEEeCCCcchH
Confidence 66677777744 5789999999987665444433321 478899999864221 10 0135799999998644333
Q ss_pred -HHHHHHHhcccCCeEEEEe
Q 031568 81 -NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 -~~~~~~~~~L~~gG~iv~~ 99 (157)
.+...+.+.|+|||.+++.
T Consensus 217 ~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 217 RIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred HHHHHHHHHhccCCCEEEEE
Confidence 3445677899999999983
No 144
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=65.66 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=68.0
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE----ccHHHHHHHHhhcCCCCCceeEEEEcCCC-------
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVDADK------- 76 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~----~d~~~~l~~~~~~~~~~~~fD~I~iD~~~------- 76 (157)
++...|.++++++|.++.++..|.+|++++++.+++.+++ +|+.+-.+. ..+++|+++.+++.
T Consensus 166 ll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~ 239 (328)
T KOG2904|consen 166 LLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNR 239 (328)
T ss_pred HHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc------ccCceeEEecCCCcccccchh
Confidence 4556789999999999999999999999999999999984 444443321 25789999987631
Q ss_pred -------------------c---ccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 -------------------D---NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 -------------------~---~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
. .+..++..+.++|+|||.+.++-.
T Consensus 240 ~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 240 QLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 0 123466677799999999998754
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=2.2e-06 Score=60.64 Aligned_cols=89 Identities=9% Similarity=-0.020 Sum_probs=63.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-|..++.. +.+++++|+++.+++.+++++.. .++++++++|+.++.. +..+||.|+.+.+.....+
T Consensus 25 G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~-------~~~~~d~vi~n~Py~~~~~ 92 (169)
T smart00650 25 GALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL-------PKLQPYKVVGNLPYNISTP 92 (169)
T ss_pred cHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc-------cccCCCEEEECCCcccHHH
Confidence 3334444444 68999999999999999999864 2489999999987632 1346999999986544445
Q ss_pred HHHHHHh--cccCCeEEEEeccc
Q 031568 82 YHERLMK--LLKVGGIAVYDNTL 102 (157)
Q Consensus 82 ~~~~~~~--~L~~gG~iv~~~~~ 102 (157)
.+..+.+ .+.++|++++..-.
T Consensus 93 ~i~~~l~~~~~~~~~~l~~q~e~ 115 (169)
T smart00650 93 ILFKLLEEPPAFRDAVLMVQKEV 115 (169)
T ss_pred HHHHHHhcCCCcceEEEEEEHHH
Confidence 5666553 34588999886543
No 146
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.39 E-value=4.4e-06 Score=65.41 Aligned_cols=84 Identities=19% Similarity=0.294 Sum_probs=66.3
Q ss_pred hCC-CcEEEEEeCChhHHHHHHHHH--HHcC---C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----
Q 031568 11 GNK-ILQITAIDVNRETYEIGLPII--KKAG---V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----- 78 (157)
Q Consensus 11 ~~~-~~~v~~ve~~~~~~~~a~~~~--~~~~---~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----- 78 (157)
++| -.+|+-+|.||+|++.++++. ...+ . ++|++++..|+.+|++.. .+.||.|++|-..++
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a------~~~fD~vIVDl~DP~tps~~ 382 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA------ADMFDVVIVDLPDPSTPSIG 382 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh------cccccEEEEeCCCCCCcchh
Confidence 567 679999999999999999543 2221 2 468999999999999875 468999999864322
Q ss_pred ---cHHHHHHHHhcccCCeEEEEec
Q 031568 79 ---YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ---~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
-.+++..+.+.|+++|++|+..
T Consensus 383 rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 383 RLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hhhhHHHHHHHHHhcCcCceEEEec
Confidence 2467888889999999999864
No 147
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.39 E-value=2.3e-06 Score=61.83 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=64.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcc
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDN 78 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~ 78 (157)
-+++||.. |-.|+++|+++..++.+++.+++.+++ |+....|..+.- + .++||+|+... ..+.
T Consensus 44 NalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~--~------~~~yD~I~st~v~~fL~~~~ 111 (192)
T PF03848_consen 44 NALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD--F------PEEYDFIVSTVVFMFLQREL 111 (192)
T ss_dssp HHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------TTTEEEEEEESSGGGS-GGG
T ss_pred HHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc--c------cCCcCEEEEEEEeccCCHHH
Confidence 35566664 889999999999999999998888884 999999986642 2 46799998642 3345
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+.+++.+...++|||+.++...
T Consensus 112 ~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 112 RPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCcEEEEEEEe
Confidence 67788999999999999888544
No 148
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.39 E-value=2.5e-06 Score=61.12 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=58.2
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------ccHHHHH
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHE 84 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------~~~~~~~ 84 (157)
+++++|+++++++.|++|++..|+.+.+.+..+|+.+.- + ..+++|.|+.|++.. -|..+++
T Consensus 63 ~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~ 135 (179)
T PF01170_consen 63 KIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLR 135 (179)
T ss_dssp -EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHH
T ss_pred cEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHH
Confidence 499999999999999999999999888999999998763 2 157899999998532 2556677
Q ss_pred HHHhcccCCeEEEEe
Q 031568 85 RLMKLLKVGGIAVYD 99 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~ 99 (157)
.+.+.+++..++++.
T Consensus 136 ~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 136 ELKRVLKPRAVFLTT 150 (179)
T ss_dssp HHHCHSTTCEEEEEE
T ss_pred HHHHHCCCCEEEEEE
Confidence 788889996666653
No 149
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.38 E-value=4.8e-06 Score=61.20 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=64.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~L 90 (157)
+.+++++|.++.+++.+++++...+.. ++++..+|+.+..... .++||+|++.. .......+++.+.+.|
T Consensus 67 ~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 139 (224)
T TIGR01983 67 GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFDVVTCMEVLEHVPDPQAFIRACAQLL 139 (224)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCccEEEehhHHHhCCCHHHHHHHHHHhc
Confidence 567999999999999999999887763 6899999998764321 36899999864 2335567889999999
Q ss_pred cCCeEEEEec
Q 031568 91 KVGGIAVYDN 100 (157)
Q Consensus 91 ~~gG~iv~~~ 100 (157)
++||.+++..
T Consensus 140 ~~gG~l~i~~ 149 (224)
T TIGR01983 140 KPGGILFFST 149 (224)
T ss_pred CCCcEEEEEe
Confidence 9999988754
No 150
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.36 E-value=4.1e-06 Score=64.71 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=64.8
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|.-|..|+.+.+ +.+++++|++++|++.|++++......-++..+++|+.+.++-.... ..+...++|++...
T Consensus 75 G~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 75 SRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRLGFFPGSTIGNFT 152 (301)
T ss_pred chhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeEEEEecccccCCC
Confidence 445666777665 68999999999999999998876432235788999998754322100 00123445554421
Q ss_pred -cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....+++.+.+.|+|||.++++
T Consensus 153 ~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 153 PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22346788999999999999874
No 151
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.33 E-value=7.7e-06 Score=58.32 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=64.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE----EcC-------CCcccHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDA-------DKDNYCNY 82 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~----iD~-------~~~~~~~~ 82 (157)
.++++++|.+++++++|+..+++.+.++.|++.+.|+.+- ... .++||+|. .|+ ......-|
T Consensus 91 ~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~~-----~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y 163 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DFL-----SGQFDLVLDKGTLDAISLSPDGPVGRLVVY 163 (227)
T ss_pred CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--ccc-----ccceeEEeecCceeeeecCCCCcccceeee
Confidence 4569999999999999999999999987899999999763 221 46788886 222 12233557
Q ss_pred HHHHHhcccCCeEEEEecccC
Q 031568 83 HERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+..+.++|+|||++++-.|-|
T Consensus 164 ~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 164 LDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred hhhHhhccCCCcEEEEEecCc
Confidence 788889999999999976655
No 152
>PHA03411 putative methyltransferase; Provisional
Probab=98.33 E-value=3.9e-06 Score=63.71 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=58.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|.-+..++...++.+|+++|+++.+++.+++++ ++++++++|+.++.. ..+||+|+++++...
T Consensus 76 Gilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 76 GRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCCcEEEEcCCccccCc
Confidence 444444555556789999999999999999864 268899999987642 457999999874211
Q ss_pred --------c------------HHHHHHHHhcccCCeEEEE
Q 031568 79 --------Y------------CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 --------~------------~~~~~~~~~~L~~gG~iv~ 98 (157)
+ ...+.....+|+|+|.+.+
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 1 2344445568888886654
No 153
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.32 E-value=2.1e-06 Score=58.81 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=57.5
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC------CCc------ccHHHH
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DKD------NYCNYH 83 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~------~~~------~~~~~~ 83 (157)
+|+++|+.+++++.+++.+++.++.+++++++.+=......+. .+++|+++.+- ++. .....+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999999999999999999998899999877555433231 34899999863 111 235678
Q ss_pred HHHHhcccCCeEEEEe
Q 031568 84 ERLMKLLKVGGIAVYD 99 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~ 99 (157)
+.++++|+|||++++-
T Consensus 76 ~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 76 EAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEE
Confidence 8899999999999883
No 154
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.31 E-value=3.5e-06 Score=66.82 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=71.6
Q ss_pred cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----
Q 031568 4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---- 78 (157)
Q Consensus 4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---- 78 (157)
-|+++|+ ....+.|++-|.+...+...+.|+.+.|+. +..+...|..++-..-. .++||.|++|++++.
T Consensus 255 KTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~-----~~~fDRVLLDAPCSGtgvi 328 (460)
T KOG1122|consen 255 KTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEF-----PGSFDRVLLDAPCSGTGVI 328 (460)
T ss_pred hHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCccccccccc-----CcccceeeecCCCCCCccc
Confidence 3566666 335889999999999999999999999986 66677888876522111 348999999986542
Q ss_pred ---------------------cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 ---------------------YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ---------------------~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
-.+++..+.+++++||+||+.++.
T Consensus 329 ~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 329 SKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 124677778999999999998874
No 155
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.30 E-value=2.5e-06 Score=62.37 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=59.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++...|+.+++++|+++++++.|++++ .+++++.+|+.+ + + ++++||+|++....
T Consensus 55 G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~--~-~-----~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 55 GMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD--P-F-----KDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC--C-C-----CCCCEEEEEECChhhhCCH
Confidence 555666766668899999999999999999864 246788888876 2 1 25789999986532
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
......++.+.+.+ ++.+++.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 22355667777766 345555443
No 156
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.30 E-value=2.4e-06 Score=64.12 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=58.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~ 89 (157)
.+.+++++|+++.+++.|+++.. ...++.+|+.+. + + .+++||+|++... .......+.++.+.
T Consensus 63 ~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~ 129 (251)
T PRK10258 63 RGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATFDLAWSNLAVQWCGNLSTALRELYRV 129 (251)
T ss_pred cCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHH
Confidence 46899999999999999988642 246788898653 2 1 2568999998753 23566789999999
Q ss_pred ccCCeEEEEecc
Q 031568 90 LKVGGIAVYDNT 101 (157)
Q Consensus 90 L~~gG~iv~~~~ 101 (157)
|+|||.+++...
T Consensus 130 Lk~gG~l~~~~~ 141 (251)
T PRK10258 130 VRPGGVVAFTTL 141 (251)
T ss_pred cCCCeEEEEEeC
Confidence 999999998643
No 157
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=3e-06 Score=62.61 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=58.2
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcCCCCCceeE
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDY 69 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~ 69 (157)
...+||. .+.+|++||+++.+++.+.+ +.++ ..+|+++++|+.+..+.. .+.||+
T Consensus 51 da~~LA~--~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~------~~~fd~ 119 (218)
T PRK13255 51 DMLWLAE--QGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD------LADVDA 119 (218)
T ss_pred hHHHHHh--CCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc------CCCeeE
Confidence 3444554 48899999999999998643 2222 357999999998864321 357999
Q ss_pred EEE-----cCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 70 AFV-----DADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 70 I~i-----D~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
|+- ..+...-..+++.+.++|+|||++++
T Consensus 120 v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 120 VYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 982 22233346788999999999986443
No 158
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.29 E-value=8.5e-06 Score=59.95 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|.-+..++. .+.+|+++|+++++++.|++++...+..+++++.++|+.+. .++||+|++-.. .
T Consensus 67 G~~~~~la~--~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 67 GLLSIELAK--RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGEFDIVVCMDVLIHYPA 134 (219)
T ss_pred CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCCcCEEEEhhHHHhCCH
Confidence 433444443 36799999999999999999998887766899999998753 357999986321 1
Q ss_pred cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......+..+.+.+++++++.+.
T Consensus 135 ~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 135 SDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEC
Confidence 22345677777888877777663
No 159
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.28 E-value=2.3e-06 Score=65.14 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=58.9
Q ss_pred cccHHHHHhhCC---CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNK---ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~---~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|.-|..++...+ ..+++++|+++.+++.|+++. .++.+..+|+.+. + + .+++||+|+.-...
T Consensus 97 G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 97 GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQSLDAIIRIYAP-- 161 (272)
T ss_pred CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCceeEEEEecCC--
Confidence 445556665544 248999999999999997753 3578899998753 3 2 25689999975432
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.|+|||.+++-
T Consensus 162 --~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 162 --CKAEELARVVKPGGIVITV 180 (272)
T ss_pred --CCHHHHHhhccCCCEEEEE
Confidence 2356788999999999974
No 160
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.28 E-value=1.4e-05 Score=57.57 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.-..++-.+|..+++.+|.....+...+....+.|++ +++++++.+.+ +. ...+||+|+.-+-. ....
T Consensus 60 GfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~aRAv~-~l~~ 129 (184)
T PF02527_consen 60 GFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVTARAVA-PLDK 129 (184)
T ss_dssp TTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEEEESSS-SHHH
T ss_pred CChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEEeehhc-CHHH
Confidence 666677888889999999999999999999999999996 89999999988 21 25789999988754 4678
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
+++.+.+++++||.+++
T Consensus 130 l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 130 LLELARPLLKPGGRLLA 146 (184)
T ss_dssp HHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 89999999999999886
No 161
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.25 E-value=4.7e-06 Score=67.67 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~ 87 (157)
...+|++||.|+.++...++.+..+++.++|+++++|+.++-. .+++|+|+..- ..+..++.+..+.
T Consensus 213 ~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pekvDIIVSElLGsfg~nEl~pE~Lda~~ 284 (448)
T PF05185_consen 213 GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEKVDIIVSELLGSFGDNELSPECLDAAD 284 (448)
T ss_dssp CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-EEEEEE---BTTBTTTSHHHHHHHGG
T ss_pred CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCceeEEEEeccCCccccccCHHHHHHHH
Confidence 4679999999999998888888899998999999999998732 56899999753 2234567888888
Q ss_pred hcccCCeEEEEec
Q 031568 88 KLLKVGGIAVYDN 100 (157)
Q Consensus 88 ~~L~~gG~iv~~~ 100 (157)
+.|+|+|+++-..
T Consensus 285 rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 285 RFLKPDGIMIPSS 297 (448)
T ss_dssp GGEEEEEEEESSE
T ss_pred hhcCCCCEEeCcc
Confidence 9999999998653
No 162
>PRK10742 putative methyltransferase; Provisional
Probab=98.24 E-value=8.1e-06 Score=61.06 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=53.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc------CC--CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA------GV--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 73 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~------~~--~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD 73 (157)
|+....+.+..-+++|+++|.+|..+.+.++++++. +. ..+++++++|+.++++.. ..+||+||+|
T Consensus 98 GlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------~~~fDVVYlD 171 (250)
T PRK10742 98 GLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLD 171 (250)
T ss_pred CccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------CCCCcEEEEC
Confidence 444444333334788999999999999999999985 32 257999999999999864 4579999999
Q ss_pred CC
Q 031568 74 AD 75 (157)
Q Consensus 74 ~~ 75 (157)
+.
T Consensus 172 PM 173 (250)
T PRK10742 172 PM 173 (250)
T ss_pred CC
Confidence 84
No 163
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.24 E-value=2e-06 Score=65.31 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=57.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHH------Hc--------------------CCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568 14 ILQITAIDVNRETYEIGLPIIK------KA--------------------GVDHKINFIESEALSVLDQLLKYSENEGSF 67 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~------~~--------------------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f 67 (157)
+.+|+++|+|+.+++.|++.+- .. ++.++|++.++|+.+... +.++|
T Consensus 132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-------~~~~f 204 (264)
T smart00138 132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-------PLGDF 204 (264)
T ss_pred CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-------ccCCC
Confidence 5799999999999999998531 00 012468899999876421 15689
Q ss_pred eEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEe
Q 031568 68 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 68 D~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
|+|++-.. .+.....++.+.+.|+|||.+++.
T Consensus 205 D~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 205 DLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99998431 123346888899999999999984
No 164
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.24 E-value=1.1e-05 Score=65.87 Aligned_cols=89 Identities=25% Similarity=0.307 Sum_probs=63.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
|.-|..++.. ..+|+++|+++++++.+++. .+..++++++.+|+.+. ++ + +.++||+|++.....
T Consensus 49 G~~~~~la~~--~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~-~-----~~~~fD~I~~~~~l~~l~ 117 (475)
T PLN02336 49 GRFTGELAKK--AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLN-I-----SDGSVDLIFSNWLLMYLS 117 (475)
T ss_pred CHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccC-C-----CCCCEEEEehhhhHHhCC
Confidence 4445555554 56999999999999887652 23345799999998642 22 2 256899999875321
Q ss_pred --ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 --NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 --~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||++++.+.
T Consensus 118 ~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 118 DKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 245788889999999999988544
No 165
>PHA03412 putative methyltransferase; Provisional
Probab=98.23 E-value=2e-05 Score=58.64 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=57.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----c---------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----N--------- 78 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~--------- 78 (157)
+..+|+++|+++.++++|++|+. ++.++.+|+.... + .++||+|+.+++-. .
T Consensus 75 ~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~ 140 (241)
T PHA03412 75 KPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAE 140 (241)
T ss_pred CCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cCCccEEEECCCCCCccccccCCcccccH
Confidence 46799999999999999998752 4789999987542 1 45899999987421 0
Q ss_pred -cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 -YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 -~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+++++|+.|+-.+++
T Consensus 141 ~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 141 FEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred HHHHHHHHHHHHcCCCEEEeCcccc
Confidence 234677778888888887766554
No 166
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.21 E-value=5.4e-06 Score=61.01 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=58.4
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--------------CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQLLKYSENEGSFDYA 70 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--------------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I 70 (157)
..+||. .+-+|+++|+++.+++.+.+ ++++ ..+|+++++|+.+.-... .++||.|
T Consensus 49 a~~LA~--~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~~~fD~i 117 (213)
T TIGR03840 49 LAWLAE--QGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD------LGPVDAV 117 (213)
T ss_pred HHHHHh--CCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCccc------CCCcCEE
Confidence 344554 48899999999999998643 2222 246899999998753211 3468888
Q ss_pred EEcC-----CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568 71 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 71 ~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+-.. +......+++.+.++|+|||++++...
T Consensus 118 ~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 118 YDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 7322 222345688899999999998666433
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.19 E-value=1e-05 Score=62.97 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=50.8
Q ss_pred HHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 7 LFMTGNKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
+++.+.++.+++++|+++.+++.|++|++.+ ++.++|+++. .+....+..+.. +.++||+|+++++
T Consensus 131 lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~fDlivcNPP 198 (321)
T PRK11727 131 LIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNERFDATLCNPP 198 (321)
T ss_pred HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCceEEEEeCCC
Confidence 3455667899999999999999999999999 7988999864 455554433210 2468999999985
No 168
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.17 E-value=2e-05 Score=58.09 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=59.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++.. +.+++++|+++.+++.|++++...+..++++++.+|.. .. .++||+|++... .
T Consensus 75 G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~fD~v~~~~~l~~~~~ 142 (230)
T PRK07580 75 GSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRFDTVVCLDVLIHYPQ 142 (230)
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCcCEEEEcchhhcCCH
Confidence 4455555554 46799999999999999999998887668999999932 11 467999987532 1
Q ss_pred cccHHHHHHHHhcccCCeEEEE
Q 031568 77 DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+.....++.+.+.+++++++.+
T Consensus 143 ~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 143 EDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred HHHHHHHHHHHhhcCCeEEEEE
Confidence 2334556666666655555443
No 169
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=7.7e-05 Score=56.93 Aligned_cols=122 Identities=16% Similarity=0.258 Sum_probs=93.5
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------cHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-------YCNYH 83 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~--~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-------~~~~~ 83 (157)
-..++.+|++...++..++++... |.+ .+|.++.||...+++..+ .++||.|+.|.+.+. ...++
T Consensus 145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~-----~~~~dVii~dssdpvgpa~~lf~~~~~ 219 (337)
T KOG1562|consen 145 VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK-----ENPFDVIITDSSDPVGPACALFQKPYF 219 (337)
T ss_pred ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-----cCCceEEEEecCCccchHHHHHHHHHH
Confidence 457889999999999999998874 444 679999999999998764 678999999875432 24578
Q ss_pred HHHHhcccCCeEEEEe-cccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC----CeeEEEE
Q 031568 84 ERLMKLLKVGGIAVYD-NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG----DGITICR 154 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~----~G~~v~~ 154 (157)
+.+.+.|+++|+++.. ++.|-- . ...+.+++|...+...-.+-.+..|+. -|+.+|-
T Consensus 220 ~~v~~aLk~dgv~~~q~ec~wl~-------------~-~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 220 GLVLDALKGDGVVCTQGECMWLH-------------L-DYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHHHHhhCCCcEEEEecceehHH-------------H-HHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 8889999999999874 333310 1 167788999888888788888888864 4555554
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=1e-05 Score=63.00 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=71.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKD-- 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-- 77 (157)
+|..+.+..+.+=+++++++|++..|+.-|+.|++..+++ ...+... |+.+. + + +..++|.|..|++-.
T Consensus 206 cGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~l-p-l-----~~~~vdaIatDPPYGrs 277 (347)
T COG1041 206 CGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNL-P-L-----RDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccC-C-C-----CCCccceEEecCCCCcc
Confidence 3566667777777999999999999999999999999986 4555555 88764 4 4 245699999998521
Q ss_pred ----------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ----------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ----------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
-|.+.++.+.+.|++||.+++-
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 1667888888999999999873
No 171
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.12 E-value=2.7e-05 Score=62.01 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=67.4
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+=.+..+... ...+|++-|+|+++++.+++|++.+++.+ ++++.+.|+...+.. ....||+|=+|+-- ..
T Consensus 61 GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~fD~IDlDPfG-Sp 133 (377)
T PF02005_consen 61 GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERFDVIDLDPFG-SP 133 (377)
T ss_dssp SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-EEEEEE--SS---
T ss_pred cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccCCEEEeCCCC-Cc
Confidence 44444556653 45799999999999999999999999987 799999999988742 15789999999853 34
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~ 98 (157)
..+++.+.+.++.||+|.+
T Consensus 134 ~pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 134 APFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred cHhHHHHHHHhhcCCEEEE
Confidence 6789999999999999987
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=6.1e-05 Score=56.03 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=65.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC-----C-----------------------------CcEEEEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV-----D-----------------------------HKINFIE 47 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-----~-----------------------------~~i~~~~ 47 (157)
|.=|+.+|+.+....|+++|+|+..+..|+++++...- . +++.+..
T Consensus 70 G~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~ 149 (288)
T KOG2899|consen 70 GFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQK 149 (288)
T ss_pred chhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccccCCcchhccc
Confidence 55678888888888899999999999999999865311 0 0111111
Q ss_pred ----ccHHHHHHHHhhcCCCCCceeEEEEcC---------CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568 48 ----SEALSVLDQLLKYSENEGSFDYAFVDA---------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 48 ----~d~~~~l~~~~~~~~~~~~fD~I~iD~---------~~~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
-+..+++ .+ ....||.|++-. .......+|..+.++|.|||++|++-=-|
T Consensus 150 ~n~vle~~dfl-~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW 212 (288)
T KOG2899|consen 150 ENYVLESDDFL-DM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW 212 (288)
T ss_pred ccEEEecchhh-hh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch
Confidence 1111223 11 146799998632 23457789999999999999999974434
No 173
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.10 E-value=1.1e-05 Score=63.79 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=50.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc---------CCCCCceeEEEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY---------SENEGSFDYAFV 72 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~---------~~~~~~fD~I~i 72 (157)
|+.|.-+..+....+|++||.++++++.|++|++.++++ +++++.+++.++...+... ......+|.|++
T Consensus 206 G~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil 284 (352)
T PF05958_consen 206 GVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL 284 (352)
T ss_dssp TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE
T ss_pred cCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE
Confidence 444444444445789999999999999999999999996 8999999887653322100 001236899999
Q ss_pred cCCCcccHH-HHHHH
Q 031568 73 DADKDNYCN-YHERL 86 (157)
Q Consensus 73 D~~~~~~~~-~~~~~ 86 (157)
||+..+..+ ..+.+
T Consensus 285 DPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 285 DPPRAGLDEKVIELI 299 (352)
T ss_dssp ---TT-SCHHHHHHH
T ss_pred cCCCCCchHHHHHHH
Confidence 998766443 44444
No 174
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.10 E-value=1.9e-05 Score=57.89 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=57.8
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..|..+++.. +.++|++||+++. .+. .+++++++|+.+. ++++... ...++||+|++|....
T Consensus 63 G~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~~~~D~V~S~~~~~~ 129 (209)
T PRK11188 63 GGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGDSKVQVVMSDMAPNM 129 (209)
T ss_pred CHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCCCCCCEEecCCCCcc
Confidence 66666777754 5689999999981 122 3589999998763 2222110 0256899999986321
Q ss_pred ------c-------cHHHHHHHHhcccCCeEEEEe
Q 031568 78 ------N-------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ------~-------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
. ....++.+.+.|+|||.+++.
T Consensus 130 ~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 130 SGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 0 134678888999999999985
No 175
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.08 E-value=8.2e-06 Score=61.17 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCC-----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHE 84 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~ 84 (157)
-+++|++||.++++++.|++........+ ++++.+.++... .++||.|++--- .....++++
T Consensus 110 lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~~fDaVvcsevleHV~dp~~~l~ 179 (282)
T KOG1270|consen 110 LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TGKFDAVVCSEVLEHVKDPQEFLN 179 (282)
T ss_pred hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------ccccceeeeHHHHHHHhCHHHHHH
Confidence 37999999999999999999954433322 366666666543 456999997431 224577888
Q ss_pred HHHhcccCCeEEEEeccc
Q 031568 85 RLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~~~~ 102 (157)
.+.++|+|||.+++.++.
T Consensus 180 ~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 180 CLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHhCCCCceEeeehh
Confidence 899999999999886553
No 176
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.07 E-value=7.9e-05 Score=55.43 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=50.4
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHER 85 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~ 85 (157)
++...+..+|+.+|+|+..++..++..++.|+. |+.++.|..+-+|.-. .++||.+|.|++.. ...-++..
T Consensus 61 ~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~fD~f~TDPPyT~~G~~LFlsR 133 (243)
T PF01861_consen 61 LALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKFDVFFTDPPYTPEGLKLFLSR 133 (243)
T ss_dssp HHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-BSEEEE---SSHHHHHHHHHH
T ss_pred HHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCCCEEEeCCCCCHHHHHHHHHH
Confidence 444556789999999999999999999999984 9999999999988532 57899999998632 34446677
Q ss_pred HHhcccCCeE
Q 031568 86 LMKLLKVGGI 95 (157)
Q Consensus 86 ~~~~L~~gG~ 95 (157)
+...|+..|.
T Consensus 134 gi~~Lk~~g~ 143 (243)
T PF01861_consen 134 GIEALKGEGC 143 (243)
T ss_dssp HHHTB-STT-
T ss_pred HHHHhCCCCc
Confidence 7778887774
No 177
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=4.7e-05 Score=54.60 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=52.9
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----cccHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHER 85 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-----~~~~~~~~~ 85 (157)
.+...+|+++|+||++++.+++|..+. ..+++++.+|+.++ ...+|.++++++. ..-..+++.
T Consensus 65 ~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~ 132 (198)
T COG2263 65 LLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLK 132 (198)
T ss_pred hcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CCccceEEECCCCccccccCCHHHHHH
Confidence 446789999999999999999999993 35899999999876 5689999999853 223456666
Q ss_pred HHhc
Q 031568 86 LMKL 89 (157)
Q Consensus 86 ~~~~ 89 (157)
+++.
T Consensus 133 Ale~ 136 (198)
T COG2263 133 ALEI 136 (198)
T ss_pred HHHh
Confidence 6554
No 178
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.04 E-value=5.8e-05 Score=55.25 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=61.0
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-CcccHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCN 81 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~~~~ 81 (157)
+=..+|+......+++++|+++..++.|++++++.|+.++|+++.||..+.++. .+..|.|++-+- -.-..+
T Consensus 10 yLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivIAGMGG~lI~~ 82 (205)
T PF04816_consen 10 YLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVIAGMGGELIIE 82 (205)
T ss_dssp HHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEEEEE-HHHHHH
T ss_pred HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEEecCCHHHHHH
Confidence 334566666677799999999999999999999999999999999999988752 334899998652 223456
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
+++.....++....+|.
T Consensus 83 ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 83 ILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp HHHHTGGGGTT--EEEE
T ss_pred HHHhhHHHhccCCeEEE
Confidence 66666666665555555
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.03 E-value=6.3e-05 Score=62.13 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=73.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~- 77 (157)
|=.++.+|..+|+..++++|+....+..+.+.+.+.++. ++.++.+|+..+...+. ++++|.|++. ++..
T Consensus 359 G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~~-----~~sv~~i~i~FPDPWpKk 432 (506)
T PRK01544 359 GEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDLP-----NNSLDGIYILFPDPWIKN 432 (506)
T ss_pred hHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhcC-----cccccEEEEECCCCCCCC
Confidence 445667888899999999999999999998888888885 89999999866555442 5789999884 4321
Q ss_pred -------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
-.+++++...+.|+|||.+-+.
T Consensus 433 rh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 433 KQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 1467899999999999998763
No 180
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.5e-05 Score=58.89 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=65.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
++|+++.-+-.|.++++++|.++..++.|++.+++.|+.+++++++-|....--.. ....+|.||+|-+.+ ..
T Consensus 118 SlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-----ks~~aDaVFLDlPaP--w~ 190 (314)
T KOG2915|consen 118 SLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-----KSLKADAVFLDLPAP--WE 190 (314)
T ss_pred hHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-----cccccceEEEcCCCh--hh
Confidence 35666666666999999999999999999999999999999999999886531111 146799999997533 33
Q ss_pred HHHHHHhcccCCeEEE
Q 031568 82 YHERLMKLLKVGGIAV 97 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv 97 (157)
.+..+.+.|+.+|.-+
T Consensus 191 AiPha~~~lk~~g~r~ 206 (314)
T KOG2915|consen 191 AIPHAAKILKDEGGRL 206 (314)
T ss_pred hhhhhHHHhhhcCceE
Confidence 3444555666666433
No 181
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.00 E-value=5.2e-05 Score=54.00 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=56.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEE-cC--C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSENEGSFDYAFV-DA--D 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~i-D~--~ 75 (157)
|+..+.+++..+..+|+..|.++ .++.++.|++.++ ...++++..-|..+.. +... ...+||+|+. |. .
T Consensus 57 Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 57 GLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----EPHSFDVILASDVLYD 131 (173)
T ss_dssp SHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----S-SSBSEEEEES--S-
T ss_pred chhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----ccccCCEEEEecccch
Confidence 55555566555788999999999 9999999999987 5567888887765533 2222 1468999985 43 2
Q ss_pred CcccHHHHHHHHhcccCCeEEEEe
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...++.+++.+.++|+++|.+++-
T Consensus 132 ~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 132 EELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 345677888888999998886654
No 182
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.99 E-value=1.2e-05 Score=58.60 Aligned_cols=131 Identities=14% Similarity=0.176 Sum_probs=62.9
Q ss_pred cHHHHHh---h-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC-
Q 031568 4 PTKLFMT---G-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK- 76 (157)
Q Consensus 4 st~~l~~---~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~- 76 (157)
|..++|. . .+.++|++||++...... +.++.-...++|++++||..+. +.+...- .......+|+.|+..
T Consensus 46 Sli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~-~~~~~~vlVilDs~H~ 122 (206)
T PF04989_consen 46 SLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVREL-ASPPHPVLVILDSSHT 122 (206)
T ss_dssp HHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-----SSEEEEESS---
T ss_pred hHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHh-hccCCceEEEECCCcc
Confidence 5555544 3 378999999997554432 2233334557999999998643 2222100 012457799999863
Q ss_pred -cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCee
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 140 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (157)
......++...+++++|+.+|+.+.............-| +..+ ....++..+.|..+++|.
T Consensus 123 ~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~-w~~g--~~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 123 HEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRP-WGPG--NNPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp -SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------HHHHHHHHHTTTTEE
T ss_pred HHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccc-hhhh--hHHHHHHHHHHHHCCCcE
Confidence 345667777889999999999977665433222111111 1110 112444445578888865
No 183
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.94 E-value=4.8e-05 Score=54.71 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=53.7
Q ss_pred cHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 4 PTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 4 st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
-|..++... +.++|+++|+++.+ +. ++++++.+|+.+. +..+.+. .+.++||+|++|+...
T Consensus 46 ~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~-~~~~~~D~V~~~~~~~~~g 112 (188)
T TIGR00438 46 WSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER-VGDDKVDVVMSDAAPNISG 112 (188)
T ss_pred HHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH-hCCCCccEEEcCCCCCCCC
Confidence 344445443 67899999999864 12 3578888887542 1111000 0245799999985311
Q ss_pred ----c-------cHHHHHHHHhcccCCeEEEEe
Q 031568 78 ----N-------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ----~-------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
. ....+..+.+.|+|||.+++.
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 113 YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 0 146788888999999999985
No 184
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=5.6e-05 Score=55.33 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=71.5
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
||+....+..+ |-.+-+-||.+|+.++..|.+... ..++|.+..|-..+.++.+. ++.||-|+.|.-.+.|+
T Consensus 112 MgIidT~iQe~-~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~-----d~~FDGI~yDTy~e~yE 183 (271)
T KOG1709|consen 112 MGIIDTFIQEA-PPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLP-----DKHFDGIYYDTYSELYE 183 (271)
T ss_pred hHHHHHHHhhc-CCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhcccc-----ccCcceeEeechhhHHH
Confidence 45444444444 566677899999999877765432 23689999999999999884 67899999998655444
Q ss_pred ---HHHHHHHhcccCCeEEEEecccCC
Q 031568 81 ---NYHERLMKLLKVGGIAVYDNTLWG 104 (157)
Q Consensus 81 ---~~~~~~~~~L~~gG~iv~~~~~~~ 104 (157)
++.+.+.++|+|+|++-+-|.+..
T Consensus 184 dl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 184 DLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred HHHHHHHHHhhhcCCCceEEEecCccc
Confidence 456778899999999988766543
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.91 E-value=5.3e-05 Score=58.39 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=50.4
Q ss_pred HHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 5 TKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 5 t~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++...+ +++|+++|.||++++.|++.+.. .++++++++|..++...+.+ .-.++|.|++|.+
T Consensus 34 S~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~---~~~~vDgIl~DLG 99 (296)
T PRK00050 34 SRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE---GLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc---CCCccCEEEECCC
Confidence 445555554 79999999999999999998865 35899999999998665521 0127999999864
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.3e-05 Score=56.19 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=65.0
Q ss_pred cccHHHHHh--hCCCcEEEEEeCChhHHHHHHHHHHHcC--------C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568 2 HLPTKLFMT--GNKILQITAIDVNRETYEIGLPIIKKAG--------V-DHKINFIESEALSVLDQLLKYSENEGSFDYA 70 (157)
Q Consensus 2 g~st~~l~~--~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I 70 (157)
|+=|++++. ..++...++||..|+.++.+++|++..- + ..++.++.||.....+. ..+||.|
T Consensus 94 GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-------~a~YDaI 166 (237)
T KOG1661|consen 94 GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-------QAPYDAI 166 (237)
T ss_pred cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-------cCCcceE
Confidence 444555553 3456667999999999999999998753 2 24688999999876542 5789999
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 71 FVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
++.+..+. ..+.....|++||.+++
T Consensus 167 hvGAaa~~---~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 167 HVGAAASE---LPQELLDQLKPGGRLLI 191 (237)
T ss_pred EEccCccc---cHHHHHHhhccCCeEEE
Confidence 99876544 34567788889988887
No 187
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.87 E-value=7.9e-05 Score=51.49 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=49.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L 90 (157)
+.+++++|+++.+++. .++....-+..+... +.++||+|++... .++...+++.+.++|
T Consensus 44 ~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~L 105 (161)
T PF13489_consen 44 GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLL 105 (161)
T ss_dssp TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCE
T ss_pred CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhc
Confidence 4499999999999987 122222222222211 1678999998753 234678899999999
Q ss_pred cCCeEEEEeccc
Q 031568 91 KVGGIAVYDNTL 102 (157)
Q Consensus 91 ~~gG~iv~~~~~ 102 (157)
+|||.+++....
T Consensus 106 kpgG~l~~~~~~ 117 (161)
T PF13489_consen 106 KPGGYLVISDPN 117 (161)
T ss_dssp EEEEEEEEEEEB
T ss_pred CCCCEEEEEEcC
Confidence 999999997654
No 188
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.84 E-value=9e-05 Score=55.00 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=59.8
Q ss_pred HHHHhhCCCcEEEEEeCChhHHHHHHHHH------HH-----cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 6 KLFMTGNKILQITAIDVNRETYEIGLPII------KK-----AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------~~-----~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
.+||. .+-+|+++|+++.+++.+.+.. .. .--..+++++++|+.++-+... ..++||+|+--+
T Consensus 59 ~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~----~~~~fD~VyDra 132 (226)
T PRK13256 59 LFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN----NLPVFDIWYDRG 132 (226)
T ss_pred HHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc----ccCCcCeeeeeh
Confidence 44544 3778999999999999885521 00 0012479999999998622100 135799987432
Q ss_pred -----CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568 75 -----DKDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 75 -----~~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+...-..|.+.+.++|+|||.++.-..
T Consensus 133 ~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 133 AYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred hHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 222345688888999999999987544
No 189
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.0001 Score=58.29 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=60.0
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------ccHHHHH
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHE 84 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------~~~~~~~ 84 (157)
.++++|+|+.+++.|+.|++++|+.+.|+|.++|+...-+ +.+.+|+|+++++.. -|..+.+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~-------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE-------PLEEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC-------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 4789999999999999999999999999999999987532 125899999998531 1444555
Q ss_pred HHHhcccCCeEEEE
Q 031568 85 RLMKLLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~~L~~gG~iv~ 98 (157)
.+.+.++..+..|+
T Consensus 329 ~lk~~~~~ws~~v~ 342 (381)
T COG0116 329 TLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHhcCCceEEE
Confidence 55577777777766
No 190
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.81 E-value=3.4e-05 Score=56.98 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=55.6
Q ss_pred HHHHhhCCCcEEEEEeCChhHHHHHHH-HHHHc-----C-----CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 6 KLFMTGNKILQITAIDVNRETYEIGLP-IIKKA-----G-----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~-~~~~~-----~-----~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
.+|+. .+-+|+++|+++.+++.+.+ +.... + -..+|++++||..+.-+.. .++||+|+=-+
T Consensus 53 ~~La~--~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~ 124 (218)
T PF05724_consen 53 LWLAE--QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED------VGKFDLIYDRT 124 (218)
T ss_dssp HHHHH--TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC------HHSEEEEEECS
T ss_pred HHHHH--CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh------cCCceEEEEec
Confidence 34554 37899999999999999833 22110 0 1246899999999853321 25799998321
Q ss_pred -----CCcccHHHHHHHHhcccCCeEEEE
Q 031568 75 -----DKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 75 -----~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+...-.+|.+.+.++|+|||.++.
T Consensus 125 ~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 125 FLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp STTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 223446788899999999999544
No 191
>PRK05785 hypothetical protein; Provisional
Probab=97.79 E-value=0.00011 Score=54.57 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=54.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|++++|++.|++. ...+++|+.+. + + ++++||+|++... ..+
T Consensus 63 G~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p-~-----~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 63 GELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P-F-----RDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C-C-----CCCCEEEEEecChhhccCC
Confidence 44445555544 67999999999999999863 13467888653 3 2 2678999998653 234
Q ss_pred cHHHHHHHHhcccCCe
Q 031568 79 YCNYHERLMKLLKVGG 94 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG 94 (157)
....++++.+.|+|..
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 5778999999999954
No 192
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.78 E-value=2.7e-05 Score=58.08 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-...++.++|+.+++.+|. |+.++.+++ .+||+++.||..+-+ +. +|++++-.-.
T Consensus 112 G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~---------P~-~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 112 GHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL---------PV-ADVYLLRHVLHDWSD 173 (241)
T ss_dssp SHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC---------SS-ESEEEEESSGGGS-H
T ss_pred hHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhh---------cc-ccceeeehhhhhcch
Confidence 434455777899999999999 899999888 569999999998432 34 9999985422
Q ss_pred cccHHHHHHHHhcccCC--eEEEEecccC
Q 031568 77 DNYCNYHERLMKLLKVG--GIAVYDNTLW 103 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~g--G~iv~~~~~~ 103 (157)
..-..+++.+.+.|+|| |.|++.+.+.
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 23456789999999998 8888766554
No 193
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.00015 Score=53.31 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=71.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCc-eeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~-fD~I~iD~~~~~~~ 80 (157)
|+.-.-+|-.+|+.+++-+|...+.+...++-.++.|++ +++++++.+.++-++ .+ ||+|.+-+-. ...
T Consensus 79 GfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D~vtsRAva-~L~ 148 (215)
T COG0357 79 GFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYDVVTSRAVA-SLN 148 (215)
T ss_pred CCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCcEEEeehcc-chH
Confidence 455556676789999999999999999999999999996 899999999887432 23 9999987643 457
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.+.+.+.+++++||.+++
T Consensus 149 ~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 149 VLLELCLPLLKVGGGFLA 166 (215)
T ss_pred HHHHHHHHhcccCCcchh
Confidence 788999999999888764
No 194
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.75 E-value=0.00011 Score=63.00 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=48.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
..+++++|+++.+++.|++|+..+|+.+++++.++|+.+..... ..++||+|+.+++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP 312 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP 312 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence 34799999999999999999999999888999999998753221 1257999999985
No 195
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.75 E-value=0.00035 Score=54.42 Aligned_cols=84 Identities=13% Similarity=0.002 Sum_probs=54.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~- 76 (157)
|.-+..++. .+.+|+++|+++.+++.|+++++..+. ..++++..+|+.+. .++||+|++-...
T Consensus 156 G~~a~~la~--~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~~~fD~Vv~~~vL~ 223 (315)
T PLN02585 156 GSLAIPLAL--EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------SGKYDTVTCLDVLI 223 (315)
T ss_pred CHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------CCCcCEEEEcCEEE
Confidence 333444443 367999999999999999999877532 23688898887542 4679999864221
Q ss_pred ----cccHHHHHHHHhcccCCeEEEE
Q 031568 77 ----DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 77 ----~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
......++.+. .+.++|+++.
T Consensus 224 H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 224 HYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred ecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 11223444444 4567777765
No 196
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=97.73 E-value=4.4e-05 Score=57.36 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 26 TYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 26 ~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+..++|+.+.|+ .++++++.|...+.++.. +.+++-++.+|++. ......++.+.+.|.|||+|++|+...
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 45566777777775 468999999999998865 25689999999863 223456888889999999999998654
Q ss_pred CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC
Q 031568 104 GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 147 (157)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 147 (157)
.| ..+++.+|.+.- ++...+.++.
T Consensus 216 ~g----------------cr~AvdeF~~~~----gi~~~l~~id 239 (248)
T PF05711_consen 216 PG----------------CRKAVDEFRAEH----GITDPLHPID 239 (248)
T ss_dssp HH----------------HHHHHHHHHHHT----T--S--EE-S
T ss_pred hH----------------HHHHHHHHHHHc----CCCCccEEec
Confidence 22 456777775432 3344455653
No 197
>PRK06202 hypothetical protein; Provisional
Probab=97.71 E-value=0.00016 Score=53.69 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=55.1
Q ss_pred cccHHHHHh----hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMT----GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..|+. ..++.+|+++|+++++++.|+++.... ++++..+++... +. .+++||+|++.....
T Consensus 72 G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------~~~~fD~V~~~~~lh 140 (232)
T PRK06202 72 GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------EGERFDVVTSNHFLH 140 (232)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------cCCCccEEEECCeee
Confidence 444445553 235679999999999999999876543 345555554332 21 156899999875321
Q ss_pred -----ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -----NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -----~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....++.+.+.++ |.+++.+.
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 13457888888887 44444443
No 198
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.66 E-value=0.00046 Score=53.13 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=62.5
Q ss_pred HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHH
Q 031568 9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHER 85 (157)
Q Consensus 9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~ 85 (157)
++......|+++|.++....+.+-.-+-.|...++... ....+.++. .+.||.||+-+ ..+.....+..
T Consensus 133 M~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~FDtVF~MGVLYHrr~Pl~~L~~ 204 (315)
T PF08003_consen 133 MLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGAFDTVFSMGVLYHRRSPLDHLKQ 204 (315)
T ss_pred HhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCCcCEEEEeeehhccCCHHHHHHH
Confidence 33445678999999999888765544444544333333 344455553 36799999876 34556778999
Q ss_pred HHhcccCCeEEEEecccCCcc
Q 031568 86 LMKLLKVGGIAVYDNTLWGGT 106 (157)
Q Consensus 86 ~~~~L~~gG~iv~~~~~~~~~ 106 (157)
+...|++||.+|.+.....|.
T Consensus 205 Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 205 LKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred HHHhhCCCCEEEEEEeeecCC
Confidence 999999999999987765543
No 199
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.65 E-value=6.3e-05 Score=54.01 Aligned_cols=79 Identities=8% Similarity=0.085 Sum_probs=61.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---C--CcccHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---D--KDNYCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~--~~~~~~~~~~~~ 87 (157)
..-+|++||.+|..++.|.+|++..|.. +++++.||+.++- -+.-|.|++.. . .......+..++
T Consensus 53 ~A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~---------fe~ADvvicEmlDTaLi~E~qVpV~n~vl 122 (252)
T COG4076 53 AAERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD---------FENADVVICEMLDTALIEEKQVPVINAVL 122 (252)
T ss_pred hhceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc---------ccccceeHHHHhhHHhhcccccHHHHHHH
Confidence 4789999999999999999999888875 8999999998862 24578887532 1 122345678888
Q ss_pred hcccCCeEEEEecc
Q 031568 88 KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 ~~L~~gG~iv~~~~ 101 (157)
+.|+..+.++-..+
T Consensus 123 eFLr~d~tiiPq~v 136 (252)
T COG4076 123 EFLRYDPTIIPQEV 136 (252)
T ss_pred HHhhcCCccccHHH
Confidence 89999999886443
No 200
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.61 E-value=0.00063 Score=52.65 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=51.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++.+.++++|+++|.||.+++.|++.++.. .+++++++++..++...+.+. ..+++|.|++|-+
T Consensus 35 S~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~vDgIl~DLG 101 (305)
T TIGR00006 35 SKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTKIDGILVDLG 101 (305)
T ss_pred HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCcccEEEEecc
Confidence 344555556699999999999999999988765 368999999999876554310 1357999999854
No 201
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.59 E-value=0.00066 Score=51.92 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=67.4
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------~~~~~~~~~~ 88 (157)
.+|...|.+|..++..++.+++.|+.+-++|.++|+.+.-. +.+ .....+++++.+-.+- ....+.-+..
T Consensus 162 ~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~---l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~ 237 (311)
T PF12147_consen 162 DSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA---LDPAPTLAIVSGLYELFPDNDLVRRSLAGLAR 237 (311)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc---cCCCCCEEEEecchhhCCcHHHHHHHHHHHHH
Confidence 79999999999999999999999998777999999988532 211 1456899998763221 2334666678
Q ss_pred cccCCeEEEEecccCCc
Q 031568 89 LLKVGGIAVYDNTLWGG 105 (157)
Q Consensus 89 ~L~~gG~iv~~~~~~~~ 105 (157)
.+.|||++|+-+--|+.
T Consensus 238 al~pgG~lIyTgQPwHP 254 (311)
T PF12147_consen 238 ALEPGGYLIYTGQPWHP 254 (311)
T ss_pred HhCCCcEEEEcCCCCCc
Confidence 99999999998766654
No 202
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.57 E-value=0.00076 Score=47.61 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=65.9
Q ss_pred CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568 1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-- 77 (157)
Q Consensus 1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-- 77 (157)
+|+-|-.+++ ..+...++++|.+++.+.+..+.. +.+++++||+.+.-..+.+ -.+..||.|++.-+..
T Consensus 59 TGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e--~~gq~~D~viS~lPll~~ 130 (194)
T COG3963 59 TGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE--HKGQFFDSVISGLPLLNF 130 (194)
T ss_pred ccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh--cCCCeeeeEEeccccccC
Confidence 3666666555 557899999999999998887744 3466899999876433321 1246799999865432
Q ss_pred ---ccHHHHHHHHhcccCCeEEEE
Q 031568 78 ---NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ---~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.-.++++.+...|..||.++-
T Consensus 131 P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 131 PMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEE
Confidence 335789999999999999885
No 203
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00073 Score=53.16 Aligned_cols=85 Identities=13% Similarity=0.247 Sum_probs=67.9
Q ss_pred HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568 6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 85 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~ 85 (157)
+..+...+..+++.=|++|++++++++|++.+... ...+++.|+-..+.+. ...||.|=+|+-- ....+++.
T Consensus 68 IRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~IDiDPFG-SPaPFlDa 139 (380)
T COG1867 68 IRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDVIDIDPFG-SPAPFLDA 139 (380)
T ss_pred hhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccEEecCCCC-CCchHHHH
Confidence 33444445559999999999999999999998443 5667779999888754 4789999999843 34678999
Q ss_pred HHhcccCCeEEEE
Q 031568 86 LMKLLKVGGIAVY 98 (157)
Q Consensus 86 ~~~~L~~gG~iv~ 98 (157)
+.+.++.||++.+
T Consensus 140 A~~s~~~~G~l~v 152 (380)
T COG1867 140 ALRSVRRGGLLCV 152 (380)
T ss_pred HHHHhhcCCEEEE
Confidence 9999999999976
No 204
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.56 E-value=0.00057 Score=52.73 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|.-|..++.. +.+|+++|+|+.+++.++++++..+..++++++++|+.+.- ..+||.|+.+.+.
T Consensus 48 G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~---------~~~~d~VvaNlPY 111 (294)
T PTZ00338 48 GNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE---------FPYFDVCVANVPY 111 (294)
T ss_pred HHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc---------ccccCEEEecCCc
Confidence 3334444443 57899999999999999999988776668999999998742 2468999988653
No 205
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0011 Score=47.47 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=67.7
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|+-+..|++. .|++...+.|+||++++..++.++.++. +++.+.+|....+. .++.|+++.+++.
T Consensus 55 GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 55 GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVDVLVFNPPYVPTS 124 (209)
T ss_pred chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCccEEEECCCcCcCC
Confidence 5555666663 3899999999999999999999988876 58899999988775 4789999987631
Q ss_pred --cc------------------cHHHHHHHHhcccCCeEEEEecc
Q 031568 77 --DN------------------YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 --~~------------------~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+. ...++.++-.+|+|.|++..-.+
T Consensus 125 ~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 125 DEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 00 12345555578899999876443
No 206
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0003 Score=57.34 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=62.8
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee-EEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-YAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD-~I~iD~~~~~~~~~~ 83 (157)
|.-++.+.+..+|++||++|+.++-|++|++.+|++ +.+|+.|-+.+.++.+... .-++=+ ++++|++.......+
T Consensus 396 ~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ 472 (534)
T KOG2187|consen 396 TIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKV 472 (534)
T ss_pred ceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc--CCCCCceEEEECCCcccccHHH
Confidence 333555557899999999999999999999999997 8999999999988877521 112445 778899877665555
Q ss_pred HHHHhccc
Q 031568 84 ERLMKLLK 91 (157)
Q Consensus 84 ~~~~~~L~ 91 (157)
-.+++..+
T Consensus 473 ik~l~~~~ 480 (534)
T KOG2187|consen 473 IKALRAYK 480 (534)
T ss_pred HHHHHhcc
Confidence 44444444
No 207
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00027 Score=48.75 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=55.2
Q ss_pred HhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----ccHHH
Q 031568 9 MTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNY 82 (157)
Q Consensus 9 ~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~~~~ 82 (157)
+..+ ....|+++|++|++++++++|++++.+ ++++.++|..+.... .+.||-+++|++.. .--++
T Consensus 65 a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~-------~g~fDtaviNppFGTk~~~aDm~f 135 (185)
T KOG3420|consen 65 AFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELK-------GGIFDTAVINPPFGTKKKGADMEF 135 (185)
T ss_pred HhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhcc-------CCeEeeEEecCCCCcccccccHHH
Confidence 3444 467899999999999999999999987 468999999876542 57899999998521 12345
Q ss_pred HHHHHhccc
Q 031568 83 HERLMKLLK 91 (157)
Q Consensus 83 ~~~~~~~L~ 91 (157)
++.++++.+
T Consensus 136 v~~al~~~~ 144 (185)
T KOG3420|consen 136 VSAALKVAS 144 (185)
T ss_pred HHHHHHHHH
Confidence 555555433
No 208
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.45 E-value=0.0016 Score=47.84 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=65.0
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-CcccHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~~~~~~~~ 83 (157)
+.+|...++...+++.|+++..++.|.+|+.++++.+++++..+|....+. .+..+|.|.+-+- -.-..+++
T Consensus 31 p~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------~~d~~d~ivIAGMGG~lI~~IL 103 (226)
T COG2384 31 PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-------LEDEIDVIVIAGMGGTLIREIL 103 (226)
T ss_pred HHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-------ccCCcCEEEEeCCcHHHHHHHH
Confidence 455666778999999999999999999999999999999999999977654 2457999998763 22345677
Q ss_pred HHHHhcccC
Q 031568 84 ERLMKLLKV 92 (157)
Q Consensus 84 ~~~~~~L~~ 92 (157)
++..+.|+.
T Consensus 104 ee~~~~l~~ 112 (226)
T COG2384 104 EEGKEKLKG 112 (226)
T ss_pred HHhhhhhcC
Confidence 777766664
No 209
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0004 Score=56.40 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=74.6
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
||=++..+...| -.+|++-|.++..++..++|++.++.++.++..++|+....-.-. .....||+|=+|+-- ...
T Consensus 121 GlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~---~~~~~FDvIDLDPyG-s~s 196 (525)
T KOG1253|consen 121 GLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP---MVAKFFDVIDLDPYG-SPS 196 (525)
T ss_pred hHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc---ccccccceEecCCCC-Ccc
Confidence 555666676555 458999999999999999999999999999999999987654321 113679999999843 235
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.+++.+.+.++.||++.+
T Consensus 197 ~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 197 PFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred HHHHHHHHHhhcCCEEEE
Confidence 689999999999999987
No 210
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.37 E-value=0.00032 Score=51.02 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=49.1
Q ss_pred CcEEEEEeCChhHHHHHHHHH--------------HH-----cC--------CCCcEEEEEccHHHHHHHHhhcCCCCCc
Q 031568 14 ILQITAIDVNRETYEIGLPII--------------KK-----AG--------VDHKINFIESEALSVLDQLLKYSENEGS 66 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~--------------~~-----~~--------~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 66 (157)
..+|++.|+|+.+++.|++-. ++ .+ +.++|+|...|..+..+ ..+.
T Consensus 64 ~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~-------~~~~ 136 (196)
T PF01739_consen 64 DFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP-------PFGR 136 (196)
T ss_dssp SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------------
T ss_pred ceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc-------ccCC
Confidence 469999999999999995421 11 11 12358888888887111 2568
Q ss_pred eeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEEec
Q 031568 67 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 67 fD~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
||+||+-.- ...-..+++.+.+.|+|||.++...
T Consensus 137 fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 137 FDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 999998542 2223567888889999999999853
No 211
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=97.36 E-value=0.0013 Score=44.04 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=63.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+... .+|++++.+++..+.+++ .|...-+.....|..+.+..+. ....+|.||-... ...
T Consensus 3 G~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---~~~ 70 (130)
T PF00107_consen 3 GLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---SGD 70 (130)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---SHH
T ss_pred HHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---cHH
Confidence 677778888765 999999999999877765 4533223333444666666553 2347999986544 366
Q ss_pred HHHHHHhcccCCeEEEEeccc
Q 031568 82 YHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.++.+.++++++|.+++-...
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHHhccCCEEEEEEcc
Confidence 889999999999999985543
No 212
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00035 Score=56.62 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------ 78 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------ 78 (157)
+..+....|..++++||++|++++.|++++....- .|..++..|..+.+.+..++-..+..||++++|.+...
T Consensus 310 ~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~ 388 (482)
T KOG2352|consen 310 PSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQC 388 (482)
T ss_pred ccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcC
Confidence 33445567999999999999999999999976543 37888999999998877542112457999999864221
Q ss_pred ------cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 ------YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ------~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
-..++..+...|.|.|+++++-+-
T Consensus 389 pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 389 PPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred CchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 124556667899999999886543
No 213
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.30 E-value=0.00061 Score=53.18 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=62.8
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHER 85 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~ 85 (157)
+++.....+|++||.+.-+ +.|++.+..+++++.|+++.|.+.+. .+ +.++.|.|+..=- .--+...++.
T Consensus 77 F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eKVDiIvSEWMGy~Ll~EsMlds 148 (346)
T KOG1499|consen 77 FAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEKVDIIVSEWMGYFLLYESMLDS 148 (346)
T ss_pred HHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec-----CccceeEEeehhhhHHHHHhhhhhh
Confidence 4444468899999997655 99999999999998999999999887 34 2478999987521 1112223333
Q ss_pred HH----hcccCCeEEEEecc
Q 031568 86 LM----KLLKVGGIAVYDNT 101 (157)
Q Consensus 86 ~~----~~L~~gG~iv~~~~ 101 (157)
++ +.|+|||++.-+.+
T Consensus 149 Vl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 149 VLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred hhhhhhhccCCCceEccccc
Confidence 32 69999999986644
No 214
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.30 E-value=0.00075 Score=45.51 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=39.0
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+++++.||+.+.++++ ...||.||.|+-.+ ...+++..+.+++++||++..
T Consensus 32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 3678999999999987 47899999997322 246899999999999999986
No 215
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.25 E-value=0.00038 Score=51.25 Aligned_cols=85 Identities=21% Similarity=0.215 Sum_probs=61.7
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-------
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD------- 73 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD------- 73 (157)
.|+|+..|.. ++-..+++|++|.|+++|.+ ++.. -.++.+|.-+-+|. +++.||-+++-
T Consensus 61 sGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~--~e~e----gdlil~DMG~Glpf------rpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 61 SGLSGSVLSD--SGHQWIGVDISPSMLEQAVE--RELE----GDLILCDMGEGLPF------RPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcchheecc--CCceEEeecCCHHHHHHHHH--hhhh----cCeeeeecCCCCCC------CCCccceEEEeeeeeeec
Confidence 3778877765 46788999999999999987 3221 35788998887764 37899999852
Q ss_pred -CC------CcccHHHHHHHHhcccCCeEEEEe
Q 031568 74 -AD------KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 74 -~~------~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
++ ++....+|..+...|++|+.-|+.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 22 223445677788888888888763
No 216
>PRK13699 putative methylase; Provisional
Probab=97.24 E-value=0.0006 Score=50.70 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=40.3
Q ss_pred EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------------ccHHHHHHHHhcccCCeEEEE
Q 031568 43 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 43 i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+++++||+.+.++.+. ++++|+|+.|++-. .+..++.++.+.|+|||.+++
T Consensus 2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3689999999998874 78999999997531 123566778899999999875
No 217
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.0029 Score=48.62 Aligned_cols=70 Identities=11% Similarity=0.185 Sum_probs=53.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|-|-.+|-+..+.++++++|.||.+++.|++.+..++ +|+.+++++..+....+... ..+++|-|++|-+
T Consensus 36 GHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~vDGiL~DLG 105 (314)
T COG0275 36 GHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGKVDGILLDLG 105 (314)
T ss_pred HhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCceeEEEEecc
Confidence 3455555555457889999999999999999998765 69999999988766554321 1358999999854
No 218
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.22 E-value=0.00073 Score=48.77 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=46.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~~~ 89 (157)
.+.+++++|+++++++.+++ .+++++.+|+.+.++.+ .+++||+|++.... ......++++.+.
T Consensus 35 ~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~-----~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~ 101 (194)
T TIGR02081 35 KQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAF-----PDKSFDYVILSQTLQATRNPEEILDEMLRV 101 (194)
T ss_pred cCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhccccc-----CCCCcCEEEEhhHhHcCcCHHHHHHHHHHh
Confidence 46688999999999988864 14678889987644322 25689999987532 2345566666665
Q ss_pred ccC
Q 031568 90 LKV 92 (157)
Q Consensus 90 L~~ 92 (157)
+++
T Consensus 102 ~~~ 104 (194)
T TIGR02081 102 GRH 104 (194)
T ss_pred CCe
Confidence 553
No 219
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.21 E-value=0.0029 Score=47.84 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=45.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|.-|..++.. ..+|+++|+++.+++.+++++.. .++++++++|+.+. + ...||.|+.+.+
T Consensus 41 G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~--------~~~~d~Vv~NlP 100 (258)
T PRK14896 41 GALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-D--------LPEFNKVVSNLP 100 (258)
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-C--------chhceEEEEcCC
Confidence 4445555554 56999999999999999998865 24899999999864 1 235899998865
No 220
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.19 E-value=0.0033 Score=53.68 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=41.4
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+++++.||+.+.++++ ...+|.+|.|+-.+ ...++|..+.++++|||+++.
T Consensus 148 ~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 148 TLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 3568899999999876 35699999997322 246789999999999999985
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.15 E-value=0.0008 Score=52.12 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=45.1
Q ss_pred HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
.++.+.|+++++++|.||++++.|++.++.. .+|+.+++++..+....+... ....++|-|++|-+.
T Consensus 37 aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~-~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 37 AILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL-NGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT-TTTS-EEEEEEE-S-
T ss_pred HHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc-cCCCccCEEEEcccc
Confidence 3444556799999999999999999987655 569999999988765544321 013589999999654
No 222
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.14 E-value=0.00042 Score=51.54 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=36.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcC--CC------CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAG--VD------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~--~~------~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
+++|+++|.||-...+.+.-++++. .. .|++++++|+.++++. +..+||+|++|+
T Consensus 97 G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------~~~s~DVVY~DP 159 (234)
T PF04445_consen 97 GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------PDNSFDVVYFDP 159 (234)
T ss_dssp T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC------HSS--SEEEE--
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh------cCCCCCEEEECC
Confidence 7899999999999998887665531 11 3799999999999872 167899999998
No 223
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.14 E-value=0.0016 Score=50.90 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=63.3
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNY 82 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~ 82 (157)
+|+.....+|++||-+ +|++.||+.++.+.+.+||.++.|...++ ++ +++.|+|+..+- .+...+.
T Consensus 194 FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~DviISEPMG~mL~NERMLEs 264 (517)
T KOG1500|consen 194 FAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKVDVIISEPMGYMLVNERMLES 264 (517)
T ss_pred HHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhccEEEeccchhhhhhHHHHHH
Confidence 5555568899999986 68899999999999999999999999876 23 578999998762 1223334
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
+-.+.+.|+|+|-...
T Consensus 265 Yl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 265 YLHARKWLKPNGKMFP 280 (517)
T ss_pred HHHHHhhcCCCCcccC
Confidence 4456689999998753
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00045 Score=51.41 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=51.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~ 91 (157)
-.+|+++|++++|++.|++.....-..-...+...+..+.+. .+++.|+|.+--. .-..+.+++.+.+.||
T Consensus 55 ~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLR 127 (261)
T KOG3010|consen 55 YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-------GEESVDLITAAQAVHWFDLERFYKEAYRVLR 127 (261)
T ss_pred hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-------CCcceeeehhhhhHHhhchHHHHHHHHHHcC
Confidence 568999999999999998854322111123344444444332 3678999987532 2246788999999999
Q ss_pred CCe-EEEE
Q 031568 92 VGG-IAVY 98 (157)
Q Consensus 92 ~gG-~iv~ 98 (157)
+.| ++.+
T Consensus 128 k~Gg~iav 135 (261)
T KOG3010|consen 128 KDGGLIAV 135 (261)
T ss_pred CCCCEEEE
Confidence 987 6655
No 225
>PRK11524 putative methyltransferase; Provisional
Probab=97.11 E-value=0.0014 Score=50.36 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=41.3
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c------------c----HHHHHHHHhcccCCeEEEEe
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N------------Y----CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~------------~----~~~~~~~~~~L~~gG~iv~~ 99 (157)
..+++++|+.+.+..+. +++||+||+|++-. . | .+++..+.++|+|||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999987763 67899999998521 0 1 35677888999999999863
No 226
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.09 E-value=0.00029 Score=54.12 Aligned_cols=81 Identities=23% Similarity=0.325 Sum_probs=55.2
Q ss_pred CcEEEEEeCChhHHHHHHHHH------------------HHc-----C-------CCCcEEEEEccHHHHHHHHhhcCCC
Q 031568 14 ILQITAIDVNRETYEIGLPII------------------KKA-----G-------VDHKINFIESEALSVLDQLLKYSEN 63 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~------------------~~~-----~-------~~~~i~~~~~d~~~~l~~~~~~~~~ 63 (157)
..+|+++|+|+.+++.|++.+ ... | +..+|+|...|..+.- . ..
T Consensus 147 ~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~--~----~~ 220 (287)
T PRK10611 147 RWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ--W----AV 220 (287)
T ss_pred CcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC--C----cc
Confidence 468999999999999997752 110 1 2245677777776521 1 01
Q ss_pred CCceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEec
Q 031568 64 EGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 64 ~~~fD~I~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+.||+||+-. +...-..+++.+.+.|+|||++++..
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 36799999732 22334667888899999999998853
No 227
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.08 E-value=0.0016 Score=44.41 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=42.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 52 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 52 (157)
|..+.+++...+..+++++|.+|.+++.+++|++.+++. +++++...+.+
T Consensus 10 G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 10 GDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred cHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 667777777778889999999999999999999998875 68888777654
No 228
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0009 Score=49.83 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----CCCcccH
Q 031568 8 FMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYC 80 (157)
Q Consensus 8 l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-----~~~~~~~ 80 (157)
+.+.+ ++.+|+++|.+|.+++..+++-.... .++.....|+..- .+.. ....+++|+|.+- -.+....
T Consensus 89 ll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~--~~~~-~~~~~svD~it~IFvLSAi~pek~~ 163 (264)
T KOG2361|consen 89 LLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP--SLKE-PPEEGSVDIITLIFVLSAIHPEKMQ 163 (264)
T ss_pred hhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch--hccC-CCCcCccceEEEEEEEeccChHHHH
Confidence 44444 45999999999999999999876543 3555555555331 1110 1135688887532 2344567
Q ss_pred HHHHHHHhcccCCeEEEEecc
Q 031568 81 NYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..++.+.++|+|||.|++.+-
T Consensus 164 ~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 164 SVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred HHHHHHHHHhCCCcEEEEeec
Confidence 788899999999999998654
No 229
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.01 E-value=0.0031 Score=45.55 Aligned_cols=77 Identities=13% Similarity=0.234 Sum_probs=53.5
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cccHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~~~~~~~~~~ 87 (157)
...+.+..++|++++.+..+.+ . .+.++++|+.+-+..+. +++||.|++.... ......+++++
T Consensus 33 ~~k~v~g~GvEid~~~v~~cv~----r----Gv~Viq~Dld~gL~~f~-----d~sFD~VIlsqtLQ~~~~P~~vL~Eml 99 (193)
T PF07021_consen 33 DEKQVDGYGVEIDPDNVAACVA----R----GVSVIQGDLDEGLADFP-----DQSFDYVILSQTLQAVRRPDEVLEEML 99 (193)
T ss_pred HhcCCeEEEEecCHHHHHHHHH----c----CCCEEECCHHHhHhhCC-----CCCccEEehHhHHHhHhHHHHHHHHHH
Confidence 4468999999999998876644 2 36689999999988773 7899999986532 23345566655
Q ss_pred hcccCCeEEEEecc
Q 031568 88 KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 ~~L~~gG~iv~~~~ 101 (157)
+. ...+++.+-|.
T Consensus 100 RV-gr~~IVsFPNF 112 (193)
T PF07021_consen 100 RV-GRRAIVSFPNF 112 (193)
T ss_pred Hh-cCeEEEEecCh
Confidence 43 33455555554
No 230
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.95 E-value=0.0013 Score=50.79 Aligned_cols=65 Identities=11% Similarity=0.281 Sum_probs=40.3
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcCC
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|.++..+-++++.|+|+..++.|++|++.+ ++.++|+++...-. .++..+.. ..+.||+.+++++
T Consensus 120 Lg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~dftmCNPP 186 (299)
T PF05971_consen 120 LGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFDFTMCNPP 186 (299)
T ss_dssp HHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EEEEEE---
T ss_pred HhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceeeEEecCCc
Confidence 333334889999999999999999999999 99999999866432 22322211 2468999999875
No 231
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.89 E-value=0.0027 Score=49.05 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=54.7
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------- 78 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------------- 78 (157)
+..+++++|+++.++.+|+-|+...+... ...+..+|....-... ...+||+|+.+++...
T Consensus 76 ~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~ 150 (311)
T PF02384_consen 76 KEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDER 150 (311)
T ss_dssp CCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred ccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc-----cccccccccCCCCcccccccccccccccc
Confidence 68899999999999999999987766543 3568999987542210 1358999999874211
Q ss_pred -----------cHHHHHHHHhcccCCeEEEE
Q 031568 79 -----------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 -----------~~~~~~~~~~~L~~gG~iv~ 98 (157)
...++..+.+.|++||.+++
T Consensus 151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 12467888899999997544
No 232
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.82 E-value=0.0033 Score=47.90 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=51.1
Q ss_pred CcEEEEEeCChhHHHHHHHH------H-------------HHcC---------CCCcEEEEEccHHHHHHHHhhcCCCCC
Q 031568 14 ILQITAIDVNRETYEIGLPI------I-------------KKAG---------VDHKINFIESEALSVLDQLLKYSENEG 65 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~------~-------------~~~~---------~~~~i~~~~~d~~~~l~~~~~~~~~~~ 65 (157)
..+|++.|+|...++.|+.- . .+.+ +...|.|...|..+--+ . .+
T Consensus 129 ~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~------~~ 201 (268)
T COG1352 129 RVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F------LG 201 (268)
T ss_pred ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c------cC
Confidence 57999999999999999542 1 1110 01124444444443211 1 45
Q ss_pred ceeEEEEcC-----CCcccHHHHHHHHhcccCCeEEEEe
Q 031568 66 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 66 ~fD~I~iD~-----~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.||+||+-. +.+.-..+++.....|+|||++++.
T Consensus 202 ~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 202 KFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred CCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 799999743 2233456788888999999999984
No 233
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.80 E-value=0.002 Score=47.81 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=53.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~L 90 (157)
..+++++|+|..|++.|.+ + |+-+ .+.++++..+++.. ..+.||+|..-- -......+|-.+..+|
T Consensus 147 a~~ltGvDiS~nMl~kA~e---K-g~YD--~L~~Aea~~Fl~~~-----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L 215 (287)
T COG4976 147 ADRLTGVDISENMLAKAHE---K-GLYD--TLYVAEAVLFLEDL-----TQERFDLIVAADVLPYLGALEGLFAGAAGLL 215 (287)
T ss_pred HhhccCCchhHHHHHHHHh---c-cchH--HHHHHHHHHHhhhc-----cCCcccchhhhhHHHhhcchhhHHHHHHHhc
Confidence 4578999999999998866 2 2222 45778888777643 257899997421 1223566777788999
Q ss_pred cCCeEEEEe
Q 031568 91 KVGGIAVYD 99 (157)
Q Consensus 91 ~~gG~iv~~ 99 (157)
+|||.+.+.
T Consensus 216 ~~gGlfaFS 224 (287)
T COG4976 216 APGGLFAFS 224 (287)
T ss_pred CCCceEEEE
Confidence 999999884
No 234
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.76 E-value=0.011 Score=44.51 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=48.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee---EEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD---YAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD---~I~iD~~~~~ 78 (157)
|.-|..++... .+++++|+|+.+++.+++++.. .++++++++|+.+.-. .+|| +|+.+.+...
T Consensus 41 G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~---------~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 41 GALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL---------PDFPKQLKVVSNLPYNI 106 (253)
T ss_pred CHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh---------hHcCCcceEEEcCChhh
Confidence 55566666654 4699999999999999987743 3589999999976421 2355 7777765333
Q ss_pred cHHHHHHHH
Q 031568 79 YCNYHERLM 87 (157)
Q Consensus 79 ~~~~~~~~~ 87 (157)
...++..+.
T Consensus 107 ~~~il~~ll 115 (253)
T TIGR00755 107 SSPLIFKLL 115 (253)
T ss_pred HHHHHHHHh
Confidence 334444444
No 235
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.72 E-value=0.007 Score=47.80 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=62.4
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
+|+-+..+++..+..+|+.+|.+++.++.|++.... +.+..... +.......+. ....+|.+|--.. .
T Consensus 180 IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g~D~vie~~G---~ 248 (350)
T COG1063 180 IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRGADVVIEAVG---S 248 (350)
T ss_pred HHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCCCCEEEECCC---C
Confidence 366777777787889999999999999999884421 12222222 3333333331 1236999996655 5
Q ss_pred HHHHHHHHhcccCCeEEEEeccc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...++.+.+.+++||.++.-.+.
T Consensus 249 ~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 249 PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHHHHHHhcCCCEEEEEecc
Confidence 66788999999999999985543
No 236
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.019 Score=40.47 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=71.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEE-cCC--
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DAD-- 75 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i-D~~-- 75 (157)
+|++-+++|...|...|...|-+++.++-.++..-.+-.+ .++.+..-+....-.+. ....||+|+. |+-
T Consensus 41 t~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~-----eq~tFDiIlaADClFf 115 (201)
T KOG3201|consen 41 TGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ-----EQHTFDIILAADCLFF 115 (201)
T ss_pred hhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH-----hhCcccEEEeccchhH
Confidence 4677777777779999999999999998888866554222 12222221111111111 1458999986 332
Q ss_pred CcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeee
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 145 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p 145 (157)
.+.-..+.+.+..+|+|.|.-++-. |+ ..+.++.|..++.. -+|...+-|
T Consensus 116 dE~h~sLvdtIk~lL~p~g~Al~fs--------------PR-----Rg~sL~kF~de~~~-~gf~v~l~e 165 (201)
T KOG3201|consen 116 DEHHESLVDTIKSLLRPSGRALLFS--------------PR-----RGQSLQKFLDEVGT-VGFTVCLEE 165 (201)
T ss_pred HHHHHHHHHHHHHHhCcccceeEec--------------Cc-----ccchHHHHHHHHHh-ceeEEEecc
Confidence 1223456677788999999844421 22 23457788776654 345554433
No 237
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.60 E-value=0.013 Score=44.63 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=49.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-|..++... .+|+++|+|+++++.+++++.. ++++++++|+.++- +. .-.+|.|+.+.+......
T Consensus 54 G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~--~~-----~~~~~~vv~NlPY~iss~ 120 (272)
T PRK00274 54 GALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD--LS-----ELQPLKVVANLPYNITTP 120 (272)
T ss_pred cHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC--HH-----HcCcceEEEeCCccchHH
Confidence 44555566553 4999999999999999987742 48999999998752 11 111588888765333234
Q ss_pred HHHHHH
Q 031568 82 YHERLM 87 (157)
Q Consensus 82 ~~~~~~ 87 (157)
++..+.
T Consensus 121 ii~~~l 126 (272)
T PRK00274 121 LLFHLL 126 (272)
T ss_pred HHHHHH
Confidence 444444
No 238
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.058 Score=42.68 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=58.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh--hc-CCCCCceeEEEEcCCCcc------------
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--KY-SENEGSFDYAFVDADKDN------------ 78 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~--~~-~~~~~~fD~I~iD~~~~~------------ 78 (157)
.+.|++=|.++..+...+..+....- .++.+...|+..+ +... .. +.....||.|++|.++..
T Consensus 183 ~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~-p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~ 260 (375)
T KOG2198|consen 183 RGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLF-PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWK 260 (375)
T ss_pred CCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceec-cccccccCchhhhhhcceeEEecccCCCcccccCchHhh
Confidence 56999999999999999888865543 3455555555432 2110 00 001357999999964321
Q ss_pred --------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 --------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 --------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
-..++...+++|++||.+|+.++..
T Consensus 261 ~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 261 EGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1245667778999999999998865
No 239
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.34 E-value=0.011 Score=45.07 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=49.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|.=|..|.. .+.+|+++|+||.+++..++.++....+.+.++++||..+. +...||.++.+.
T Consensus 70 GnLT~~lLe--~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~---------d~P~fd~cVsNl 131 (315)
T KOG0820|consen 70 GNLTVKLLE--AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT---------DLPRFDGCVSNL 131 (315)
T ss_pred CHHHHHHHH--hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC---------CCcccceeeccC
Confidence 444545554 38899999999999999999998887778999999999864 125699998764
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.05 E-value=0.069 Score=39.55 Aligned_cols=81 Identities=17% Similarity=0.058 Sum_probs=52.6
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH-HHHHhc
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKL 89 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~-~~~~~~ 89 (157)
..+.+.|++||.+|......-+-.++- .||--+.+||..--.-. .--+..|+||.|-..+.-.+++ ..+...
T Consensus 95 vg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~VDvI~~DVaQp~Qa~I~~~Na~~f 167 (229)
T PF01269_consen 95 VGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEMVDVIFQDVAQPDQARIAALNARHF 167 (229)
T ss_dssp HTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--EEEEEEE-SSTTHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----cccccccEEEecCCChHHHHHHHHHHHhh
Confidence 457999999999997765554433332 47888999997532110 1135899999998766555443 445579
Q ss_pred ccCCeEEEE
Q 031568 90 LKVGGIAVY 98 (157)
Q Consensus 90 L~~gG~iv~ 98 (157)
|++||.+++
T Consensus 168 Lk~gG~~~i 176 (229)
T PF01269_consen 168 LKPGGHLII 176 (229)
T ss_dssp EEEEEEEEE
T ss_pred ccCCcEEEE
Confidence 999998876
No 241
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.99 E-value=0.0059 Score=46.99 Aligned_cols=92 Identities=16% Similarity=0.010 Sum_probs=63.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+=|+-+........|+++|.+|..++..|++++.+++.++..++.||-...-+ ....|.|.+.--++. ++
T Consensus 206 GYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~AdrVnLGLlPSs-e~ 276 (351)
T KOG1227|consen 206 GYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRADRVNLGLLPSS-EQ 276 (351)
T ss_pred ceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccchheeecccccc-cc
Confidence 555653333446889999999999999999999999998888899998876432 457888887643322 22
Q ss_pred HHHHHHhcccC-Ce-EEEEe-ccc
Q 031568 82 YHERLMKLLKV-GG-IAVYD-NTL 102 (157)
Q Consensus 82 ~~~~~~~~L~~-gG-~iv~~-~~~ 102 (157)
-+-.+.+.|+| || ++-+. |+.
T Consensus 277 ~W~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 277 GWPTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred chHHHHHHhhhcCCcEEEEecccc
Confidence 23445566666 44 55553 443
No 242
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.068 Score=40.54 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=44.1
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCC
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..|+.. +.+|+++|+|+.+++..++.+. ..++++++++|+.+.-- .+ .+++.|+.+-+
T Consensus 45 T~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l-------~~~~~vVaNlP 104 (259)
T COG0030 45 TEPLLER--AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL-------AQPYKVVANLP 104 (259)
T ss_pred HHHHHhh--cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-------cCCCEEEEcCC
Confidence 4445543 6789999999999999999775 33589999999998621 11 16889998765
No 243
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.92 E-value=0.058 Score=40.57 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=51.0
Q ss_pred cHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cccc
Q 031568 4 PTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNY 79 (157)
Q Consensus 4 st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~ 79 (157)
|..+.+. .++.-+.+.+|.+|+-.+..++|++. ..++++++.|..+.+..+.. +.++=-+|+||++ +..|
T Consensus 68 SP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allP---P~~rRglVLIDPpYE~~~dy 141 (245)
T PF04378_consen 68 SPAIAARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLP---PPERRGLVLIDPPYEQKDDY 141 (245)
T ss_dssp HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S----TTS-EEEEE-----STTHH
T ss_pred CHHHHHHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCC---CCCCCeEEEECCCCCCchHH
Confidence 4444444 35789999999999999999988865 35899999999998887641 2345679999985 3455
Q ss_pred HHHHHHHHhccc--CCeEEEE
Q 031568 80 CNYHERLMKLLK--VGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~--~gG~iv~ 98 (157)
....+.+...++ +.|++++
T Consensus 142 ~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 142 QRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHHHHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEE
Confidence 555444443332 3555543
No 244
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.91 E-value=0.32 Score=34.94 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=51.0
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
.|+.++..++. .+-+|+++|++++.++..++- +++..-..+..+. .|..+.+. ..|
T Consensus 11 vGl~~A~~lA~-~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~----------~ad 78 (185)
T PF03721_consen 11 VGLPLAAALAE-KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIK----------DAD 78 (185)
T ss_dssp THHHHHHHHHH-TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHH----------H-S
T ss_pred chHHHHHHHHh-CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhh----------ccc
Confidence 36777776655 478999999999988877531 1111101233322 34443332 478
Q ss_pred EEEEcCCC----------cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 69 YAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 69 ~I~iD~~~----------~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
++|+.-+. .......+.+.+.++++.++|..-...
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 88874321 123455677778999999998875554
No 245
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.84 E-value=0.079 Score=41.38 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=59.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
||-|.+.|++....+|+.+|..+..++.|++ + |...-...-+.+ ..++.....+. .....+|+.|-.. ...
T Consensus 182 Gl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~-~g~~~~d~~~dCs---G~~ 253 (354)
T KOG0024|consen 182 GLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKA-LGKKQPDVTFDCS---GAE 253 (354)
T ss_pred HHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhh-ccccCCCeEEEcc---Cch
Confidence 6778888889899999999999999999998 3 443111122222 22222222110 0124599988543 345
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++.+...+++||.++.-.
T Consensus 254 ~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 254 VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHHHHHhccCCEEEEec
Confidence 67788889999999976643
No 246
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.81 E-value=0.025 Score=44.46 Aligned_cols=85 Identities=24% Similarity=0.298 Sum_probs=54.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcC---------CCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCC------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADK------ 76 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~---------~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~------ 76 (157)
.-..++++|++++.++.|++..+... ..-...++.+|.... +..... ....+||+|=+-...
T Consensus 84 ~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fes 161 (331)
T PF03291_consen 84 KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFES 161 (331)
T ss_dssp T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCC
Confidence 46799999999999999999883321 112467889987642 221110 012589999764321
Q ss_pred -cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....++..+...|+|||+++.-
T Consensus 162 e~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 162 EEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22345788888999999999863
No 247
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.67 E-value=0.12 Score=37.80 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=47.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH-------cCC-CCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC--cccH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK-------AGV-DHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK--DNYC 80 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~-------~~~-~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~--~~~~ 80 (157)
+-.++++||+.+...+.|+++.+. .|. ..+++++++|..+. ..... ..-|+||++... +...
T Consensus 65 ~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~------s~AdvVf~Nn~~F~~~l~ 138 (205)
T PF08123_consen 65 GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW------SDADVVFVNNTCFDPDLN 138 (205)
T ss_dssp --SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG------HC-SEEEE--TTT-HHHH
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh------cCCCEEEEeccccCHHHH
Confidence 455699999999999988765543 344 25789999998653 23221 357999998642 2233
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..+......|++|..||.-
T Consensus 139 ~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 139 LALAELLLELKPGARIIST 157 (205)
T ss_dssp HHHHHHHTTS-TT-EEEES
T ss_pred HHHHHHHhcCCCCCEEEEC
Confidence 3445556789999999874
No 248
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.64 E-value=0.064 Score=42.24 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=55.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..+|++. +++|+++|.+++..+.|++. |.+ .++.+.-.+..+.. .+.||+|+.-.. ..
T Consensus 179 Gh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~------~~~~d~ii~tv~----~~ 240 (339)
T COG1064 179 GHMAVQYAKAM-GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV------KEIADAIIDTVG----PA 240 (339)
T ss_pred HHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh------HhhCcEEEECCC----hh
Confidence 33344456555 59999999999999888773 332 23433222333333 234999987654 44
Q ss_pred HHHHHHhcccCCeEEEEeccc
Q 031568 82 YHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.++...+.|+++|.++.-...
T Consensus 241 ~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 241 TLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHHHHHHHHhcCCEEEEECCC
Confidence 577888999999999986544
No 249
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.53 E-value=0.35 Score=35.20 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=66.2
Q ss_pred cHHHHHh----hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEE--E
Q 031568 4 PTKLFMT----GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAF--V 72 (157)
Q Consensus 4 st~~l~~----~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~--i 72 (157)
|.+++|. .....+|+++|+|-...+-+.. + .++|.++.|+..+ .++.++ +.|--|| .
T Consensus 83 Sal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~---e---~p~i~f~egss~dpai~eqi~~~~------~~y~kIfvil 150 (237)
T COG3510 83 SALFFANMMISIGQPFKVLGVDIDIKPLDPAAR---E---VPDILFIEGSSTDPAIAEQIRRLK------NEYPKIFVIL 150 (237)
T ss_pred hhhhhhHhHHhcCCCceEEEEecccCcCChhhh---c---CCCeEEEeCCCCCHHHHHHHHHHh------cCCCcEEEEe
Confidence 5555554 1134799999998655433221 1 3589999998654 223332 2333444 5
Q ss_pred cCCCc--ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568 73 DADKD--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 137 (157)
Q Consensus 73 D~~~~--~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (157)
|+++. ....-++...++|.-|-.+++.+....+.. ....|.++-..-..++.+|+ +.+|
T Consensus 151 DsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp---~~~~p~~~g~gP~~AVe~yl---r~~p 211 (237)
T COG3510 151 DSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP---GPVLPWRFGGGPYEAVEAYL---REFP 211 (237)
T ss_pred cCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC---CcccchhcCCChHHHHHHHH---HhCC
Confidence 66543 344456666789999999999776655542 22234433332344566664 5555
No 250
>PRK04148 hypothetical protein; Provisional
Probab=95.52 E-value=0.092 Score=35.86 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=43.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~ 89 (157)
.+..|+++|++|..++.++++ .++++.+|..+--..+ -+.+|+|+.--+.+.....+-.+.+.
T Consensus 38 ~G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~------y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 38 SGFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI------YKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred CCCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH------HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 478999999999988877664 2578999988753333 35799999754444444434444443
No 251
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.34 E-value=0.094 Score=40.96 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=52.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.....+|++++.+++..+.+++ .|...-+.....+..+... ..+.+|+||-... -..
T Consensus 182 G~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~-------~~g~~D~vid~~G---~~~ 247 (343)
T PRK09880 182 GCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA-------EKGYFDVSFEVSG---HPS 247 (343)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc-------cCCCCCEEEECCC---CHH
Confidence 5555556666544479999999999887765 4543112211223322221 1245998874433 234
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|++||.++.-.
T Consensus 248 ~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 248 SINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HHHHHHHHhhcCCEEEEEc
Confidence 6778889999999998744
No 252
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=0.013 Score=48.30 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----CCCcccHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD-----~~~~~~~~~~~~~~ 87 (157)
...++++||.+|.++-..+. ....+++.+|+++.+|..++-+ +.++.|+++.. ++.+--++.++-+.
T Consensus 394 RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~a-------p~eq~DI~VSELLGSFGDNELSPECLDG~q 465 (649)
T KOG0822|consen 394 RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNA-------PREQADIIVSELLGSFGDNELSPECLDGAQ 465 (649)
T ss_pred CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCC-------chhhccchHHHhhccccCccCCHHHHHHHH
Confidence 47789999999999988766 5455677899999999998853 13689999753 22334578999999
Q ss_pred hcccCCeEEEEe
Q 031568 88 KLLKVGGIAVYD 99 (157)
Q Consensus 88 ~~L~~gG~iv~~ 99 (157)
+.|+|.|+-|-.
T Consensus 466 ~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 466 KFLKPDGISIPS 477 (649)
T ss_pred hhcCCCceEccc
Confidence 999999988753
No 253
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.24 E-value=0.087 Score=40.38 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=52.2
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
+|..+-..+|..+|+++..++...+.+++.|+. +++.+.-|..+-+|+-. ..+||.++.|++
T Consensus 169 ~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kFDvfiTDPp 230 (354)
T COG1568 169 LALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKFDVFITDPP 230 (354)
T ss_pred HHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhCCeeecCch
Confidence 344445779999999999999999999999996 79999999998887643 468999999975
No 254
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.11 E-value=0.068 Score=44.50 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
..++++|+++..+..++.++...+. ..+.+..+|.........+ ...++||+|+.+|+
T Consensus 64 ~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNPP 121 (524)
T TIGR02987 64 LNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNPP 121 (524)
T ss_pred eeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc--cccCcccEEEeCCC
Confidence 6789999999999999999988762 2356676665532110100 01357999999874
No 255
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.09 E-value=0.097 Score=41.14 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---C--CCcccHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---A--DKDNYCNY 82 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~--~~~~~~~~ 82 (157)
++..+|. |-+++.+...+-.++.+++ .| |+.+.||.++-.| +-|+||+- + .-.....+
T Consensus 195 ll~~fp~--ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----------~~daI~mkWiLhdwtDedcvki 257 (342)
T KOG3178|consen 195 LLSKYPH--IKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----------KGDAIWMKWILHDWTDEDCVKI 257 (342)
T ss_pred HHHhCCC--CceeecCHHHHHhhhhhhc-CC----cceecccccccCC----------CcCeEEEEeecccCChHHHHHH
Confidence 3335454 7788888888888877775 44 7778888877543 34588862 1 12345678
Q ss_pred HHHHHhcccCCeEEEE-ecccCC
Q 031568 83 HERLMKLLKVGGIAVY-DNTLWG 104 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~-~~~~~~ 104 (157)
++.|.+.|+|||.|++ +++..+
T Consensus 258 LknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 258 LKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHHHHhCCCCCEEEEEeccCCC
Confidence 9999999999988876 555544
No 256
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.09 E-value=0.035 Score=39.46 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=45.8
Q ss_pred HHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 5 TKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 5 t~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|.+++... +.++|+++|+.+. ... ..+..+.+|..+ .+..... ...++||+|++|....
T Consensus 38 s~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 38 SQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLP--ESGEKFDLVLSDMAPNV 103 (181)
T ss_dssp HHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHG--TTTCSESEEEE------
T ss_pred eeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcc--ccccCcceeccccccCC
Confidence 34444433 6899999999987 111 245555666432 2222210 0125899999998311
Q ss_pred -------c------cHHHHHHHHhcccCCeEEEEec
Q 031568 78 -------N------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 -------~------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
. ....+..+.+.|+|||.+|+.-
T Consensus 104 ~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 104 SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp -SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1 1223445567899999988864
No 257
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.03 E-value=0.094 Score=41.02 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=54.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCC-C----cEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCC----C---cccH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVD-H----KINFIESEALSV-LDQLLKYSENEGSFDYAFVDAD----K---DNYC 80 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~-~----~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~----~---~~~~ 80 (157)
-+.++++|+.+-.+++|++..+..-.. . .+.++.||.... +..+.. .++.+||+|=+--. . ....
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e--~~dp~fDivScQF~~HYaFetee~ar 217 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE--FKDPRFDIVSCQFAFHYAFETEESAR 217 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc--CCCCCcceeeeeeeEeeeeccHHHHH
Confidence 568899999999999999877654221 1 378999997653 222210 01344999954321 1 1223
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
-.+..+.+.|+|||+++-
T Consensus 218 ~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHHHHHhhcCCCcEEEE
Confidence 456677789999999986
No 258
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.93 E-value=0.22 Score=38.92 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=58.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
||+.+.-+++...++|++||+|++..+.|++. |..+-|+- ....+.+.+.++- ++.+|+-|=-. ..
T Consensus 205 GLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT-----dgGvDysfEc~---G~ 272 (375)
T KOG0022|consen 205 GLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT-----DGGVDYSFECI---GN 272 (375)
T ss_pred HHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh-----cCCceEEEEec---CC
Confidence 56666666677899999999999999988773 43322221 1225777777764 67799988433 24
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
.+.+.+++...++| |.-++-
T Consensus 273 ~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 273 VSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred HHHHHHHHHHhhcCCCeEEEE
Confidence 66777777777777 665543
No 259
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.88 E-value=0.11 Score=38.09 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=66.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDA-----D 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~-----~ 75 (157)
|-=..++|+.+|..+-...|.++....-.+..+++.++..-..-+.-|+.+- -+-........++||.||+-. +
T Consensus 37 GqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p 116 (204)
T PF06080_consen 37 GQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISP 116 (204)
T ss_pred cHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcC
Confidence 3345678889999999999999999888889888887652212223333321 000000000145899999742 2
Q ss_pred CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
......+|+.+.++|++||.+++=..+
T Consensus 117 ~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 117 WSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 334567899999999999999875444
No 260
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.76 E-value=0.29 Score=38.63 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=59.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+++..-|+.....+|++||++++..+.|++ +|..+-+.-... |+.+.+..+. ++..|.+|--.. ..
T Consensus 198 GlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T-----~gG~d~~~e~~G---~~ 265 (366)
T COG1062 198 GLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT-----DGGADYAFECVG---NV 265 (366)
T ss_pred HHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc-----CCCCCEEEEccC---CH
Confidence 6777777777788999999999999998876 444332222222 6777777663 346888864332 34
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
+.++.++..+.++|..++-
T Consensus 266 ~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 266 EVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHHHHHHHHhcCCeEEEE
Confidence 5788888888888887763
No 261
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.75 E-value=0.19 Score=39.74 Aligned_cols=85 Identities=24% Similarity=0.299 Sum_probs=51.9
Q ss_pred cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.+..+++.. +. +|++++.+++..+.+++ .|...-+.....+..+.+..+. .+.+|+||--.. ..
T Consensus 204 G~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~~g~d~vid~~G---~~ 270 (371)
T cd08281 204 GLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----GGGVDYAFEMAG---SV 270 (371)
T ss_pred HHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----CCCCCEEEECCC---Ch
Confidence 44445555554 55 79999999998887754 4543212222233344444332 236998874322 24
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 271 ~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 271 PALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 5677888999999998863
No 262
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.66 E-value=0.047 Score=43.46 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=64.5
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcC--CCcccHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDA--DKDNYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~--~~~~~~~~~~~~~ 87 (157)
......+++++.++.-+..+.......++.++-.++.+|..+... +++.||.+. +|. ..+.....++++.
T Consensus 130 ~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-------edn~fd~v~~ld~~~~~~~~~~~y~Ei~ 202 (364)
T KOG1269|consen 130 VFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-------EDNTFDGVRFLEVVCHAPDLEKVYAEIY 202 (364)
T ss_pred HhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------CccccCcEEEEeecccCCcHHHHHHHHh
Confidence 456789999999999999998888888887666667777765422 267899995 454 2345677899999
Q ss_pred hcccCCeEEEEecc
Q 031568 88 KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 ~~L~~gG~iv~~~~ 101 (157)
+.++|||+.++...
T Consensus 203 rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 203 RVLKPGGLFIVKEW 216 (364)
T ss_pred cccCCCceEEeHHH
Confidence 99999999998544
No 263
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.64 E-value=0.076 Score=39.03 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=55.4
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Ccc
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~ 78 (157)
|=.-+.+|+..+ +-+|.+.|.-+. ++ .++.+|.... | + ++++.|++++.-. -.+
T Consensus 80 GCGdA~la~~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-P-L-----~~~svDv~VfcLSLMGTn 136 (219)
T PF05148_consen 80 GCGDAKLAKAVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-P-L-----EDESVDVAVFCLSLMGTN 136 (219)
T ss_dssp S-TT-HHHHH--S---EEEEESS-S--------------ST--TEEES-TTS--S--------TT-EEEEEEES---SS-
T ss_pred CCchHHHHHhcccCceEEEeeccCC--------------CC--CEEEecCccC-c-C-----CCCceeEEEEEhhhhCCC
Confidence 334445555444 335677766432 12 3577888543 4 2 2688999987642 347
Q ss_pred cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEE
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS 142 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (157)
+.+++.++.|.|++||.+.+-.+..+ ...++.|.+.+.. -+|...
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SR------------------f~~~~~F~~~~~~-~GF~~~ 181 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSR------------------FENVKQFIKALKK-LGFKLK 181 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHHC-TTEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEeccc------------------CcCHHHHHHHHHH-CCCeEE
Confidence 89999999999999999988776431 2235777776664 355543
No 264
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.79 Score=33.60 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=47.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-----HHHHHhhcCCCCCceeEEEEcCCCc--------cc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSENEGSFDYAFVDADKD--------NY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-----~l~~~~~~~~~~~~fD~I~iD~~~~--------~~ 79 (157)
++++|++||+.|-.. . ..|.++++|+.+ .+.... ...++|+|.+|+.+. .+
T Consensus 69 ~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l----~~~~~DvV~sD~ap~~~g~~~~Dh~ 132 (205)
T COG0293 69 AGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEAL----GGAPVDVVLSDMAPNTSGNRSVDHA 132 (205)
T ss_pred CCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHc----CCCCcceEEecCCCCcCCCccccHH
Confidence 567799999987541 1 358888888653 222221 134579999997541 11
Q ss_pred ------HHHHHHHHhcccCCeEEEEecc
Q 031568 80 ------CNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ------~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
...++.+...|+|||.+++...
T Consensus 133 r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 133 RSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 1235556689999999999753
No 265
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.58 Score=34.36 Aligned_cols=84 Identities=18% Similarity=0.070 Sum_probs=55.4
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH-HHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERL 86 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~-~~~ 86 (157)
.+--.+.+.+++||.+|....-.-..+++ .+|+--+.+||..--.-.. --+..|+||.|-..++-.+++ ..+
T Consensus 94 VSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~----~Ve~VDviy~DVAQp~Qa~I~~~Na 166 (231)
T COG1889 94 VSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRH----LVEKVDVIYQDVAQPNQAEILADNA 166 (231)
T ss_pred HHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhh----hcccccEEEEecCCchHHHHHHHHH
Confidence 44433589999999999876555444433 3477788999865322110 135799999998766655544 445
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
...|++||.+++
T Consensus 167 ~~FLk~~G~~~i 178 (231)
T COG1889 167 EFFLKKGGYVVI 178 (231)
T ss_pred HHhcccCCeEEE
Confidence 679999995443
No 266
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.22 E-value=0.36 Score=37.60 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=50.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+......|++++.+++..+.+++ .|...-+.....+..+ +..+. ....+|.+++|+. ....
T Consensus 173 G~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~-~~~~~----~~~~~d~~v~d~~--G~~~ 241 (347)
T PRK10309 173 GLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQ-IQSVL----RELRFDQLILETA--GVPQ 241 (347)
T ss_pred HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHH-HHHHh----cCCCCCeEEEECC--CCHH
Confidence 3344445555433347899999988776643 4543112222223222 22221 1346886667764 2345
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.+..+.+.|++||.++.-.
T Consensus 242 ~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 242 TVELAIEIAGPRAQLALVG 260 (347)
T ss_pred HHHHHHHHhhcCCEEEEEc
Confidence 6788889999999998743
No 267
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.22 E-value=0.29 Score=38.29 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=50.1
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.+..++++ ..+.+|+++|.+++..+.+++ .+.. ..+ .+ +.. ...+|+||=-.......
T Consensus 176 Gl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~----~~-~~~-------~~g~d~viD~~G~~~~~ 236 (341)
T cd08237 176 GYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI----DD-IPE-------DLAVDHAFECVGGRGSQ 236 (341)
T ss_pred HHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh----hh-hhh-------ccCCcEEEECCCCCccH
Confidence 5555556654 456789999999998888764 2221 111 11 111 22489887333322245
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++.+.++|+++|.++.-.
T Consensus 237 ~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HHHHHHHHhCcCCcEEEEEe
Confidence 67888999999999998643
No 268
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.13 E-value=0.032 Score=42.55 Aligned_cols=56 Identities=32% Similarity=0.490 Sum_probs=39.6
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEE----EEcCCCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I----~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
++.+..||..+.-..-. ..++||.| |+|.. ++..+|++.+.++|+|||++|--..+
T Consensus 145 ~~sm~aGDF~e~y~~~~----~~~~~d~VvT~FFIDTA-~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 145 NLSMCAGDFLEVYGPDE----NKGSFDVVVTCFFIDTA-ENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred ceeEecCccEEecCCcc----cCCcccEEEEEEEeech-HHHHHHHHHHHHHhccCCEEEecCCc
Confidence 56677777776543210 13689998 46764 46788999999999999999865544
No 269
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.13 E-value=1.9 Score=32.76 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=67.6
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYC 80 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~ 80 (157)
-|..++.. -.+|++.|.++.|... +++-|. +++ +..++-. .+.+||+|-+-. ......
T Consensus 108 VT~~l~~~--f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~-------~~~~fDvIscLNvLDRc~~P~ 168 (265)
T PF05219_consen 108 VTERLAPL--FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQ-------TDFKFDVISCLNVLDRCDRPL 168 (265)
T ss_pred HHHHHHhh--cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhc-------cCCceEEEeehhhhhccCCHH
Confidence 35555543 3469999999999554 444444 333 3333322 146899997632 122456
Q ss_pred HHHHHHHhcccCCeEEEEecccC-Cccc-------cCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeE
Q 031568 81 NYHERLMKLLKVGGIAVYDNTLW-GGTV-------AVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL 141 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (157)
..++.+.+.|+|+|+++..-++. +..| ..|.+..+-.- .+..+.+..|. .+....+|+.
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g-~~~E~~v~~l~-~v~~p~GF~v 235 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG-ATFEEQVSSLV-NVFEPAGFEV 235 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC-CcHHHHHHHHH-HHHHhcCCEE
Confidence 78999999999999998754442 1111 11222121111 23667788888 5555566653
No 270
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.05 E-value=2.2 Score=34.49 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=53.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHH------------HHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY 69 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~ 69 (157)
|++|..+.+.. +-.|+++|++++.++..++ .++++..+.|+++- .|..+.+ ..-|+
T Consensus 12 GLv~g~~lA~~-GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~----------~~adv 79 (414)
T COG1004 12 GLVTGACLAEL-GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV----------KDADV 79 (414)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----------hcCCE
Confidence 77888877764 6899999999999988743 34444333445544 3444332 24678
Q ss_pred EEEcCCC----cc------cHHHHHHHHhcccCCeEEEEeccc
Q 031568 70 AFVDADK----DN------YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 70 I~iD~~~----~~------~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+|+-.+- .. .....+.+...++...++|.....
T Consensus 80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTV 122 (414)
T COG1004 80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTV 122 (414)
T ss_pred EEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCC
Confidence 8874321 11 123344455677777777775443
No 271
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.86 E-value=0.22 Score=39.96 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=47.0
Q ss_pred CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE-cC----CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568 38 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 38 ~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i-D~----~~~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
++ ++++++++++.+.+.+.. .+++|.+.+ |. +...+.+.++.+.+.++|||.++.-+...
T Consensus 273 ~~-drv~i~t~si~~~L~~~~-----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRLP-----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CC-CeEEEEeccHHHHHHhCC-----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 45 699999999999998763 678998864 54 22346677888899999999999876643
No 272
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.75 E-value=0.027 Score=36.97 Aligned_cols=38 Identities=21% Similarity=0.526 Sum_probs=26.7
Q ss_pred ceeEEEEcCC---------CcccHHHHHHHHhcccCCeEEEEecccC
Q 031568 66 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 66 ~fD~I~iD~~---------~~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+||.|++-+- ......+|+.+...|+|||.+|.+-=-|
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 4899987431 2345678999999999999999975444
No 273
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.70 E-value=0.32 Score=36.75 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
|.++.+..+|+++|.+++.++.|++ .|+.+.. ..+ .+.+ ..+|+|++..+.....++++++.
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~---~~~-~~~~----------~~~DlvvlavP~~~~~~~l~~~~ 66 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALE----LGIIDEA---STD-IEAV----------EDADLVVLAVPVSAIEDVLEEIA 66 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEE---ESH-HHHG----------GCCSEEEE-S-HHHHHHHHHHHH
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeec---cCC-HhHh----------cCCCEEEEcCCHHHHHHHHHHhh
Confidence 4445568999999999999877754 3543321 222 2221 24688888776666677777777
Q ss_pred hcccCCeEEE
Q 031568 88 KLLKVGGIAV 97 (157)
Q Consensus 88 ~~L~~gG~iv 97 (157)
+.+++|++++
T Consensus 67 ~~~~~~~iv~ 76 (258)
T PF02153_consen 67 PYLKPGAIVT 76 (258)
T ss_dssp CGS-TTSEEE
T ss_pred hhcCCCcEEE
Confidence 7777665543
No 274
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.50 E-value=1.4 Score=34.55 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcC-C-----CcccHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDA-D-----KDNYCNYHE 84 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~-----~~~~~~~~~ 84 (157)
...+.+.+|++.++++.+.+++..... +.+++ +.||..+.+..+.+. .......+++.-+ . ...-..++.
T Consensus 103 ~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~ 180 (319)
T TIGR03439 103 KSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLA 180 (319)
T ss_pred CCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHH
Confidence 357899999999999999999973333 34555 899988876543210 0023356666543 1 223346777
Q ss_pred HHHh-cccCCeEEEE
Q 031568 85 RLMK-LLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~-~L~~gG~iv~ 98 (157)
.+.+ .|+|||.+++
T Consensus 181 ~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 181 GFLATALSPSDSFLI 195 (319)
T ss_pred HHHHhhCCCCCEEEE
Confidence 8888 8999998887
No 275
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=93.46 E-value=0.14 Score=38.83 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=57.0
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
+|.-|..|+... .+++++|+|+.+++..++.+. ..++++++++|+.++-.... -......|+.+-+.....
T Consensus 41 ~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~ 111 (262)
T PF00398_consen 41 PGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDL----LKNQPLLVVGNLPYNISS 111 (262)
T ss_dssp TSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGH----CSSSEEEEEEEETGTGHH
T ss_pred CccchhhHhccc--CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHh----hcCCceEEEEEecccchH
Confidence 467777787764 999999999999999988665 34689999999997632100 013456777665433334
Q ss_pred HHHHHHHhccc---CCeEEEEe
Q 031568 81 NYHERLMKLLK---VGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~---~gG~iv~~ 99 (157)
.++..+...-+ ...++++.
T Consensus 112 ~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 112 PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp HHHHHHHHHGGGCEEEEEEEEE
T ss_pred HHHHHHhhcccccccceEEEEe
Confidence 45555554222 33555553
No 276
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.40 E-value=0.82 Score=35.90 Aligned_cols=88 Identities=15% Similarity=0.090 Sum_probs=52.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.....+..+.+.... ....+|+|+ |+. ....
T Consensus 189 G~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~g~d~vi-d~~--g~~~ 257 (358)
T TIGR03451 189 GDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGFGADVVI-DAV--GRPE 257 (358)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCCCCCEEE-ECC--CCHH
Confidence 3344445555433369999999998887754 4543222223334444444332 124699887 442 1234
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.+++||.++.-.
T Consensus 258 ~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 258 TYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred HHHHHHHHhccCCEEEEEC
Confidence 6777888999999998643
No 277
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.24 E-value=3.3 Score=33.54 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=55.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC-----CCC---CceeEEEE
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE---GSFDYAFV 72 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~-----~~~---~~fD~I~i 72 (157)
.||.|+...+. .+.+|+++|+++..++...+ | +..+..-+..+.+....++. ... ..-|.+++
T Consensus 20 VGLPlA~~fA~-~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~iI 90 (436)
T COG0677 20 VGLPLAAAFAS-AGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFII 90 (436)
T ss_pred ccHHHHHHHHH-cCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEEE
Confidence 47777765554 48999999999999886633 3 23334444444333332110 000 14566655
Q ss_pred cCC----------CcccHHHHHHHHhcccCCeEEEEecccCCc
Q 031568 73 DAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG 105 (157)
Q Consensus 73 D~~----------~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~ 105 (157)
.-+ ........+.+.+.|++|-+++.+...+.|
T Consensus 91 ~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 91 CVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred EecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 321 111233455666899999999998766544
No 278
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=93.10 E-value=1.4 Score=27.84 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=51.5
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCCe
Q 031568 17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGG 94 (157)
Q Consensus 17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG 94 (157)
|..+|-++...+..++.++..|.. .+ ....+..+.+..+. ...||+|++|...+ ...++++.+.+.- ++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~-~v-~~~~~~~~~~~~~~-----~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYE-EV-TTASSGEEALELLK-----KHPPDLIIIDLELPDGDGLELLEQIRQIN-PSI 72 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEE-EE-EEESSHHHHHHHHH-----HSTESEEEEESSSSSSBHHHHHHHHHHHT-TTS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC-EE-EEECCHHHHHHHhc-----ccCceEEEEEeeecccccccccccccccc-ccc
Confidence 567899999999999999977652 33 35677777777664 45699999996433 3456677665544 454
Q ss_pred EEEE
Q 031568 95 IAVY 98 (157)
Q Consensus 95 ~iv~ 98 (157)
.+++
T Consensus 73 ~ii~ 76 (112)
T PF00072_consen 73 PIIV 76 (112)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 4443
No 279
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.04 E-value=0.093 Score=41.36 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=60.2
Q ss_pred HHHhhCCCcEEEEEeCChhHHH-------HHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 7 LFMTGNKILQITAIDVNRETYE-------IGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 7 ~l~~~~~~~~v~~ve~~~~~~~-------~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
+.+++.=|+.|++.|+|-.++. -.+.|+++.|.+++ +.+..+|...- .+. ....||.|++|++-.
T Consensus 223 Lvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~--~~r----sn~~fDaIvcDPPYGV 296 (421)
T KOG2671|consen 223 LVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNP--PLR----SNLKFDAIVCDPPYGV 296 (421)
T ss_pred eeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCc--chh----hcceeeEEEeCCCcch
Confidence 3344434899999999987776 45789999986655 77888887652 221 145799999997410
Q ss_pred -----------------------c------------cHHHHHHHHhcccCCeEEEE
Q 031568 78 -----------------------N------------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -----------------------~------------~~~~~~~~~~~L~~gG~iv~ 98 (157)
. +.+.+....+.|..||++++
T Consensus 297 Re~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 297 REGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred hhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 0 12445556689999999997
No 280
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.99 E-value=1.2 Score=28.92 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=53.3
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCC-CceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYAFVDADKD--NYCNYHERLMKLL 90 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~-~~fD~I~iD~~~~--~~~~~~~~~~~~L 90 (157)
..++++|.++.++..++..... .....+.+..++.... ++. .. ..||++....... .....+..+.+.+
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l 145 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLVISLLVLHLLPPAKALRELLRVL 145 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEEeeeeehhcCCHHHHHHHHHHhc
Confidence 4899999999999986555433 2211167888887652 221 12 3799994333211 1366788888999
Q ss_pred cCCeEEEEeccc
Q 031568 91 KVGGIAVYDNTL 102 (157)
Q Consensus 91 ~~gG~iv~~~~~ 102 (157)
+|+|.+++....
T Consensus 146 ~~~g~~~~~~~~ 157 (257)
T COG0500 146 KPGGRLVLSDLL 157 (257)
T ss_pred CCCcEEEEEecc
Confidence 999999886544
No 281
>PHA01634 hypothetical protein
Probab=92.82 E-value=0.27 Score=33.44 Aligned_cols=62 Identities=6% Similarity=-0.021 Sum_probs=45.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|=|+++++.+ ...+|+++|++|...+..++|++.+.+-++..... ++ +. .-+.||...+|+.
T Consensus 40 GdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW-~~------~Y~~~Di~~iDCe 101 (156)
T PHA01634 40 GSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EW-NG------EYEDVDIFVMDCE 101 (156)
T ss_pred cchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cc-cc------cCCCcceEEEEcc
Confidence 5566676665 57899999999999999999998876544443332 22 11 1468999999985
No 282
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.81 E-value=0.85 Score=35.33 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=49.6
Q ss_pred cccHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.+..+++.. +.+ |++++.+++..+.+++ .|...-+.....+ .+.+..+. ....+|+||--.. ..
T Consensus 176 G~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~~~~~d~vid~~g---~~ 242 (339)
T cd08239 176 GLGALMLARAL-GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----SGAGADVAIECSG---NT 242 (339)
T ss_pred HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----CCCCCCEEEECCC---CH
Confidence 44555566554 555 9999999988777654 4543222222222 22233322 1346998884332 23
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
..+..+.+.|+++|.++.
T Consensus 243 ~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 243 AARRLALEAVRPWGRLVL 260 (339)
T ss_pred HHHHHHHHHhhcCCEEEE
Confidence 455677889999999986
No 283
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.77 E-value=1.1 Score=33.93 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=50.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.....+|+++|.+++..+.+++ .|.+.-+.. .+..+.+..+. ....+|+||--.. ...
T Consensus 133 G~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g~d~vid~~G---~~~ 199 (280)
T TIGR03366 133 GLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRGVDVALEFSG---ATA 199 (280)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCCCCEEEECCC---ChH
Confidence 5556666666533459999999988877765 444211111 11122222221 1346999874332 244
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.++++|.++.-.
T Consensus 200 ~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 200 AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred HHHHHHHHhcCCCEEEEec
Confidence 6778889999999998644
No 284
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.73 E-value=1.1 Score=34.78 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=49.8
Q ss_pred cHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 4 PTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 4 st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
.+..+|+.. +. +|++++.+++..+.+++. .|.+.-+.....+..+.+..+. .+.+|+|| |+... . .
T Consensus 170 ~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gvd~vi-d~~g~--~-~ 236 (345)
T cd08293 170 LAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGVDVYF-DNVGG--E-I 236 (345)
T ss_pred HHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCceEEE-ECCCc--H-H
Confidence 344455554 55 899999988877666552 4654222222334445444432 34699888 44221 2 3
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
++.+.+.|+++|.++.
T Consensus 237 ~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 237 SDTVISQMNENSHIIL 252 (345)
T ss_pred HHHHHHHhccCCEEEE
Confidence 5778899999999985
No 285
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.72 E-value=3.7 Score=33.29 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=51.2
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-----CCCCCceeEEEEcCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENEGSFDYAFVDAD 75 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-----~~~~~~fD~I~iD~~ 75 (157)
||++++..++. .+-+|+++|++++.++..+ .|. +.+...+..+.+....+. ....+.-|+||+..+
T Consensus 14 ~G~~~A~~La~-~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vp 84 (415)
T PRK11064 14 IGLPTAAAFAS-RQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVP 84 (415)
T ss_pred hhHHHHHHHHh-CCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcC
Confidence 57676665544 3689999999999887532 121 222333444433221100 000124789987654
Q ss_pred Cc----------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 76 KD----------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 76 ~~----------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+ ......+.+.+.+++|.++|....
T Consensus 85 tp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 85 TPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred CCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 32 233445666788888888776543
No 286
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=92.66 E-value=0.93 Score=34.29 Aligned_cols=71 Identities=10% Similarity=0.129 Sum_probs=53.3
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~ 87 (157)
.+++-++..+|.+|+=+...++|++. ..++++..+|....+.... .+.+.=-+|+||++.+ .|..+.+.+.
T Consensus 107 lR~qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~ 180 (279)
T COG2961 107 LREQDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALA 180 (279)
T ss_pred cchhceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHH
Confidence 44788999999999999999999972 3589999999998876543 1345578999999643 4555444443
No 287
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.49 E-value=0.43 Score=33.73 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=51.0
Q ss_pred HHhhCC-CcEE--EEEeCChhHHHH---HHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 8 FMTGNK-ILQI--TAIDVNRETYEI---GLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 8 l~~~~~-~~~v--~~ve~~~~~~~~---a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|+...+ +..+ ++.|...+..+. +.+|++.+.-. .++ ++.-|+.+.-+... .....||.|+.+.+...
T Consensus 14 L~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~---~~~~~FDrIiFNFPH~G~~ 89 (166)
T PF10354_consen 14 LARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFR---LKNQRFDRIIFNFPHVGGG 89 (166)
T ss_pred HHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCccccccc---ccCCcCCEEEEeCCCCCCC
Confidence 444444 5555 455555444443 33666665222 233 34456665443321 02578999998754322
Q ss_pred --------------cHHHHHHHHhcccCCeEEEEe
Q 031568 79 --------------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 --------------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...+|+.+.++|+++|.|.+.
T Consensus 90 ~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 90 SEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 245788888999999999874
No 288
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=92.47 E-value=1.3 Score=34.48 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
|+.-..++..+.+|+++=-+++.++.+.+ ..|.+.-|.....|..+.|++.. +...|+.|=+-. -+.+
T Consensus 165 svvgQiAKlkG~rVVGiaGg~eK~~~l~~---~lGfD~~idyk~~d~~~~L~~a~-----P~GIDvyfeNVG----g~v~ 232 (340)
T COG2130 165 SVVGQIAKLKGCRVVGIAGGAEKCDFLTE---ELGFDAGIDYKAEDFAQALKEAC-----PKGIDVYFENVG----GEVL 232 (340)
T ss_pred hHHHHHHHhhCCeEEEecCCHHHHHHHHH---hcCCceeeecCcccHHHHHHHHC-----CCCeEEEEEcCC----chHH
Confidence 34444456689999999999999988876 45777678889889998888764 467999886543 3468
Q ss_pred HHHHhcccCCeEEEEeccc
Q 031568 84 ERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~~~~ 102 (157)
+.+..+|+..+.|++-..+
T Consensus 233 DAv~~~ln~~aRi~~CG~I 251 (340)
T COG2130 233 DAVLPLLNLFARIPVCGAI 251 (340)
T ss_pred HHHHHhhccccceeeeeeh
Confidence 8888999999888764433
No 289
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.47 E-value=1.2 Score=34.70 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=53.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++.+++......+++++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+|+-... -..
T Consensus 179 G~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vld~~g---~~~ 247 (351)
T cd08285 179 GLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GGKGVDAVIIAGG---GQD 247 (351)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CCCCCcEEEECCC---CHH
Confidence 4455556665544479999999888777664 4543222222234333333332 1346998874332 134
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.+..+.+.|+++|.++.-.
T Consensus 248 ~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 248 TFEQALKVLKPGGTISNVN 266 (351)
T ss_pred HHHHHHHHhhcCCEEEEec
Confidence 6788889999999998643
No 290
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=1.5 Score=36.33 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=65.2
Q ss_pred CcEEEEEeC-ChhHHHHHHHHHHHcC-CC-CcEEEE----EccHH----HHHHHHhhcCCCCCceeEEEEcCCCc--c--
Q 031568 14 ILQITAIDV-NRETYEIGLPIIKKAG-VD-HKINFI----ESEAL----SVLDQLLKYSENEGSFDYAFVDADKD--N-- 78 (157)
Q Consensus 14 ~~~v~~ve~-~~~~~~~a~~~~~~~~-~~-~~i~~~----~~d~~----~~l~~~~~~~~~~~~fD~I~iD~~~~--~-- 78 (157)
..-|.+||. ...++++.|-+.+++. +. +.|++. -.|+. +.++.. ..+.||+|++|..-+ +
T Consensus 408 rVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a-----~~~gfDVvLiDTAGR~~~~~ 482 (587)
T KOG0781|consen 408 RVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEA-----RNQGFDVVLIDTAGRMHNNA 482 (587)
T ss_pred eEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHH-----HhcCCCEEEEeccccccCCh
Confidence 445677884 5678899888877752 11 234332 12322 223322 256899999997422 2
Q ss_pred -cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568 79 -YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 137 (157)
Q Consensus 79 -~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (157)
.-.-+....+.-+|+-+|.+...+.+. +..+.++.|++.+.+++
T Consensus 483 ~lm~~l~k~~~~~~pd~i~~vgealvg~---------------dsv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 483 PLMTSLAKLIKVNKPDLILFVGEALVGN---------------DSVDQLKKFNRALADHS 527 (587)
T ss_pred hHHHHHHHHHhcCCCceEEEehhhhhCc---------------HHHHHHHHHHHHHhcCC
Confidence 233455666788899888887666432 15678899999998875
No 291
>PLN02827 Alcohol dehydrogenase-like
Probab=92.34 E-value=1 Score=35.82 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=50.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+++......|++++.+++..+.|++ .|.+.-+.... .+..+.+..+. .+.+|+||--.. .
T Consensus 206 G~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~G---~ 273 (378)
T PLN02827 206 GLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-----GGGADYSFECVG---D 273 (378)
T ss_pred HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 3444445555433468999999888776644 45532122211 13444444432 236998874332 2
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
...+..+.+.+++| |.++.-
T Consensus 274 ~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 274 TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hHHHHHHHHhhccCCCEEEEE
Confidence 34577788899998 999863
No 292
>PLN02740 Alcohol dehydrogenase-like
Probab=92.31 E-value=1.2 Score=35.28 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=50.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+..+. .+.+|+||--.. .
T Consensus 211 G~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~dvvid~~G---~ 278 (381)
T PLN02740 211 GLAVAEGARARGASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT-----GGGVDYSFECAG---N 278 (381)
T ss_pred HHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 4445555655533379999999998887755 45432222221 12344444432 236998874333 2
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
...++.+...+++| |.++.-
T Consensus 279 ~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 279 VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hHHHHHHHHhhhcCCCEEEEE
Confidence 35677778888886 887763
No 293
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.26 E-value=1.6 Score=34.33 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=51.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..+|+. -+.+|++++.+++..+.+++ ..|.+.-+..... +..+.+..+. .+.+|+|| |+.- .
T Consensus 172 G~~aiqlAk~-~G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~-----~~gvD~v~-d~vG---~ 238 (348)
T PLN03154 172 GQLVGQLAKL-HGCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF-----PEGIDIYF-DNVG---G 238 (348)
T ss_pred HHHHHHHHHH-cCCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC-----CCCcEEEE-ECCC---H
Confidence 3334445554 47789999999888766653 3455322222222 4444444431 34699888 4432 2
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..+..+.+.|+++|.++.-
T Consensus 239 ~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 239 DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHHHHHHhccCCEEEEE
Confidence 4678888999999999863
No 294
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.06 E-value=0.76 Score=33.82 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=61.4
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE---cCCCc-
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFV---DADKD- 77 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i---D~~~~- 77 (157)
|+-.+|+.-|++.|+.-+..+..++.++.+. .-.++.+.+.++..+++++.+ .++.+-+|+ |+...
T Consensus 78 Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~----kgqLskmff~fpdpHfk~ 153 (249)
T KOG3115|consen 78 LAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE----KGQLSKMFFLFPDPHFKA 153 (249)
T ss_pred ccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh----hcccccceeecCChhHhh
Confidence 3347899999999999999999999887764 124688999999999998753 344443333 32110
Q ss_pred -------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.-..++.+..-+|++||.+..
T Consensus 154 ~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 154 RKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred hhccceeechhHHHHHHhhhhcCceEEE
Confidence 112345566678999999876
No 295
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.04 E-value=1.5 Score=33.42 Aligned_cols=91 Identities=10% Similarity=0.079 Sum_probs=55.0
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHh---h-c-CCCCCceeEEEEcC-----CCcccH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---K-Y-SENEGSFDYAFVDA-----DKDNYC 80 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~---~-~-~~~~~~fD~I~iD~-----~~~~~~ 80 (157)
..|+++|+-+|.+|-.+..+|..+....- .+..++.+|+.+--.-+. - . ..-+.+.=++++.- +.....
T Consensus 92 ~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~ 170 (267)
T PF04672_consen 92 VAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPA 170 (267)
T ss_dssp H-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHH
T ss_pred hCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHH
Confidence 56999999999999999999998876542 258999999876421110 0 0 00122344444321 223567
Q ss_pred HHHHHHHhcccCCeEEEEeccc
Q 031568 81 NYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.++....+.|.||..+++....
T Consensus 171 ~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 171 GIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHHHHHHCCS-TT-EEEEEEEB
T ss_pred HHHHHHHHhCCCCceEEEEecC
Confidence 8899999999999999997764
No 296
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=92.00 E-value=1.4 Score=33.38 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=70.0
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH-HHHhcc
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLL 90 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~-~~~~~L 90 (157)
-|.+-|++||.++..-...-..+.+ ..+|--+..||.---+.- ..-+-.|.||.|-..+....++. .+...|
T Consensus 179 GpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYR----mlVgmVDvIFaDvaqpdq~RivaLNA~~FL 251 (317)
T KOG1596|consen 179 GPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYR----MLVGMVDVIFADVAQPDQARIVALNAQYFL 251 (317)
T ss_pred CCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchhee----eeeeeEEEEeccCCCchhhhhhhhhhhhhh
Confidence 3788999999987655444333332 136667778886432210 01346899999987665444433 234689
Q ss_pred cCCeEEEEe---cccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568 91 KVGGIAVYD---NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 153 (157)
Q Consensus 91 ~~gG~iv~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~ 153 (157)
++||-+++. |++.+ +..++ +..+.+++.+.++=. .|.=+.++-|...+-.+.
T Consensus 252 k~gGhfvisikancids--tv~ae--------~vFa~Ev~klqee~l-kP~EqvtLEP~erdha~V 306 (317)
T KOG1596|consen 252 KNGGHFVISIKANCIDS--TVFAE--------AVFAAEVKKLQEEQL-KPKEQVTLEPFERDHACV 306 (317)
T ss_pred ccCCeEEEEEecccccc--cccHH--------HHHHHHHHHHHHhcc-CchheeccccccCCceEE
Confidence 999988873 43321 11111 114445555533211 255566777875544433
No 297
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.71 E-value=0.31 Score=35.57 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhH----HHHHHHH-HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRET----YEIGLPI-IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA- 74 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~----~~~a~~~-~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~- 74 (157)
|+.|.+++.. .|.++|+++=.++.. ....+.+ +.+.....+++.+-.+..... ..+..|+++...
T Consensus 60 Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--------~pq~~d~~~~~~~ 131 (238)
T COG4798 60 GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--------APQKLDLVPTAQN 131 (238)
T ss_pred ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--------CCCcccccccchh
Confidence 7888888884 478899888665431 1111111 111111224554444433322 134566666421
Q ss_pred ---------CCcccHHHHHHHHhcccCCeEEEEec
Q 031568 75 ---------DKDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 75 ---------~~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...........+.+.|||||++++.+
T Consensus 132 yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 132 YHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred hhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 11123456778889999999998754
No 298
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.66 E-value=1.9 Score=34.04 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=51.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.+..+|+.....+|++++.+++..+.+++ .|.+.-+..... +..+.+.++. .+.+|+||--.. .
T Consensus 199 G~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~g---~ 266 (368)
T cd08300 199 GLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-----DGGVDYTFECIG---N 266 (368)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-----CCCCcEEEECCC---C
Confidence 4555566666533379999999998877654 454322222221 2444444432 336998874322 2
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
...+..+.+.++++ |.++.-
T Consensus 267 ~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 267 VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred hHHHHHHHHhhccCCCeEEEE
Confidence 34677788899887 888764
No 299
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.66 E-value=1.9 Score=35.72 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=23.8
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHH
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLP 32 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~ 32 (157)
+|+.++..++.. .+.+|+++|++++.++..++
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 366666655543 47899999999999887654
No 300
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.54 E-value=1.1 Score=35.09 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=50.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc---cHHHHHHHHhhcCCCCCceeE---EEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENEGSFDY---AFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~~~~fD~---I~iD~~ 75 (157)
|+.++.+|+.. +.+|++++.+++..+.+++ .|...-+..... +..+.+.++. ....+|. +++|+.
T Consensus 179 G~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t----~~~g~d~~~d~v~d~~ 249 (349)
T TIGR03201 179 GGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFA----KARGLRSTGWKIFECS 249 (349)
T ss_pred HHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhc----ccCCCCCCcCEEEECC
Confidence 55555566654 5689999999998877754 354322222222 2223333321 1234652 344553
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....++.+.+.|++||.++.-.
T Consensus 250 --g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 250 --GSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred --CChHHHHHHHHHHhcCCeEEEEC
Confidence 23456777888999999998643
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.51 E-value=1.4 Score=33.71 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
+..+|+. -+.+|++++.+++..+.+++ .|....+.....+..+.+... ..+.+|+|+-... ....++
T Consensus 181 ~~~la~~-~G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-----~~~~~D~vid~~g---~~~~~~ 247 (338)
T cd08254 181 AVQIAKA-MGAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAG-----LGGGFDVIFDFVG---TQPTFE 247 (338)
T ss_pred HHHHHHH-cCCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHh-----cCCCceEEEECCC---CHHHHH
Confidence 3334444 36779999998887776644 344321222222333333211 2457998764322 245678
Q ss_pred HHHhcccCCeEEEEe
Q 031568 85 RLMKLLKVGGIAVYD 99 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~ 99 (157)
.+.+.|+++|.++.-
T Consensus 248 ~~~~~l~~~G~~v~~ 262 (338)
T cd08254 248 DAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHHHhhcCCEEEEE
Confidence 888999999999863
No 302
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.39 E-value=1.4 Score=33.61 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=28.4
Q ss_pred cccHHHHHh--hCC-CcEEEEEeCChhHHHHHHHHHHHc
Q 031568 2 HLPTKLFMT--GNK-ILQITAIDVNRETYEIGLPIIKKA 37 (157)
Q Consensus 2 g~st~~l~~--~~~-~~~v~~ve~~~~~~~~a~~~~~~~ 37 (157)
|..|..+|+ .++ -.+++++|.++.+.++++.-++..
T Consensus 43 GpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 43 GPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred ChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 566777776 334 568999999999999999977654
No 303
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.36 E-value=2.2 Score=33.02 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=49.5
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..+++.....++++++.+++..+.+++ .|.+.-+.....+..+.+..+. ....+|+|+ |+. .-...+
T Consensus 181 ~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~~~d~vl-d~~--g~~~~~ 249 (345)
T cd08286 181 AALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGRGVDVVI-EAV--GIPATF 249 (345)
T ss_pred HHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCCCCCEEE-ECC--CCHHHH
Confidence 33445555433788888888877666653 3543223333334434333332 234699887 432 123457
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.|+++|.++.
T Consensus 250 ~~~~~~l~~~g~~v~ 264 (345)
T cd08286 250 ELCQELVAPGGHIAN 264 (345)
T ss_pred HHHHHhccCCcEEEE
Confidence 788899999999985
No 304
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.34 E-value=0.31 Score=40.26 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=45.4
Q ss_pred CCceeEEEEcCC------CcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 031568 64 EGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP 137 (157)
Q Consensus 64 ~~~fD~I~iD~~------~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (157)
..+||+|=.+.- +.....++-++-|.|+|+|.+++.+-.. ....++.....++.+
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~lrW~- 485 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSLRWE- 485 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhCcce-
Confidence 568999976642 2345677778889999999999854321 455666666555554
Q ss_pred CeeEEeeec------CCeeEEEEE
Q 031568 138 RVQLSHVAL------GDGITICRR 155 (157)
Q Consensus 138 ~~~~~~~p~------~~G~~v~~~ 155 (157)
+.+.-. ...+++++|
T Consensus 486 ---~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 486 ---VRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred ---EEEEecCCCCCCCceEEEEEC
Confidence 333333 356777765
No 305
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.23 E-value=0.73 Score=34.79 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=43.4
Q ss_pred cccHHHH--HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568 2 HLPTKLF--MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 73 (157)
Q Consensus 2 g~st~~l--~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD 73 (157)
|+..+.+ +...++..++++|+|..+++..+..+...+.. .++...|...-.+ ....|+.++-
T Consensus 115 GlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~DlaLll 178 (251)
T PF07091_consen 115 GLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPADLALLL 178 (251)
T ss_dssp TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEESEEEEE
T ss_pred cCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCcchhhHH
Confidence 4444443 44457889999999999999999999999875 5555566655422 5679999874
No 306
>PTZ00357 methyltransferase; Provisional
Probab=91.17 E-value=0.43 Score=41.24 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=53.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH-cCC-------CCcEEEEEccHHHHHHHHhhcC----CCCCceeEEEEcC-----C
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK-AGV-------DHKINFIESEALSVLDQLLKYS----ENEGSFDYAFVDA-----D 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~-~~~-------~~~i~~~~~d~~~~l~~~~~~~----~~~~~fD~I~iD~-----~ 75 (157)
-..+|++||.||..+...+.+... ..+ .++|+++.+|..++-......+ ..-+++|+|+..- +
T Consensus 727 vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGD 806 (1072)
T PTZ00357 727 VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGD 806 (1072)
T ss_pred CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHhhhccccc
Confidence 367899999998876666555432 233 3469999999998832100000 0013799998632 2
Q ss_pred CcccHHHHHHHHhcccC----CeE
Q 031568 76 KDNYCNYHERLMKLLKV----GGI 95 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~----gG~ 95 (157)
.+--++.++-+.+.|++ +|+
T Consensus 807 NELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 807 NELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccCCHHHHHHHHHhhhhhcccccc
Confidence 33357888888888876 676
No 307
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.14 E-value=2.8 Score=32.25 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=48.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
.+..+|+. .+.+|++++.+++..+.+++ .|.+.-+.... .+..+.+.... .+.+|+|| |+.- ...
T Consensus 154 ~aiqlAk~-~G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~-----~~gvdvv~-d~~G---~~~ 219 (325)
T TIGR02825 154 VVGQIAKL-KGCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKAS-----PDGYDCYF-DNVG---GEF 219 (325)
T ss_pred HHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhC-----CCCeEEEE-ECCC---HHH
Confidence 33344444 47789999998887776643 45532122222 13333333331 34699888 4431 234
Q ss_pred HHHHHhcccCCeEEEEe
Q 031568 83 HERLMKLLKVGGIAVYD 99 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~ 99 (157)
++.+.+.|+++|.++.-
T Consensus 220 ~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 220 SNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHHHHHHhCcCcEEEEe
Confidence 67888999999999863
No 308
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.02 E-value=2.2 Score=33.27 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=51.6
Q ss_pred ccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 3 LPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 3 ~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
..++.+++.. +. +|++++.+++..+.+++ .|.+.-+.....+..+.+.++. ..+.+|+|+--.. ...
T Consensus 186 ~~a~q~a~~~-G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~~~~~d~vid~~g---~~~ 253 (351)
T cd08233 186 LLTILALKAA-GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----GGGGVDVSFDCAG---VQA 253 (351)
T ss_pred HHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----CCCCCCEEEECCC---CHH
Confidence 3344455554 55 89999999888877754 3543223333344444444332 1345999985432 234
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 254 ~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 254 TLDTAIDALRPRGTAVNV 271 (351)
T ss_pred HHHHHHHhccCCCEEEEE
Confidence 677888999999998863
No 309
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.00 E-value=2.2 Score=35.67 Aligned_cols=91 Identities=14% Similarity=0.043 Sum_probs=54.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EE-------------ccHHHHHHH-HhhcCCCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEALSVLDQ-LLKYSENEG 65 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~-------------~d~~~~l~~-~~~~~~~~~ 65 (157)
|+.++..|+.. +++|+++|.+++..+++++ .|.. .+.+ -. .+..+.... +.+ ...
T Consensus 177 GL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~---~~~ 247 (509)
T PRK09424 177 GLAAIGAAGSL-GAIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE---QAK 247 (509)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHHHHHHHHHHh---ccC
Confidence 56666666665 5689999999999998877 2332 1111 01 111111111 110 014
Q ss_pred ceeEEEEcCCCcc--cHHH-HHHHHhcccCCeEEEEecc
Q 031568 66 SFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 66 ~fD~I~iD~~~~~--~~~~-~~~~~~~L~~gG~iv~~~~ 101 (157)
.+|+|+--...+. .+.. .+.+.+.++|||+++.-.+
T Consensus 248 gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 248 EVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 6999997664322 2334 4889999999999886544
No 310
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=90.96 E-value=1.3 Score=35.62 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=52.3
Q ss_pred cccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHc----CCCCcEEEEE----ccHHHHHHHHhhcCCCCCceeEEE
Q 031568 2 HLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLDQLLKYSENEGSFDYAF 71 (157)
Q Consensus 2 g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~----~~~~~i~~~~----~d~~~~l~~~~~~~~~~~~fD~I~ 71 (157)
|+.++.+|+... ..+|+++|.+++.++.+++..... |.. ..++. .+..+.+..+. ....+|.||
T Consensus 189 G~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~~~t----~g~g~D~vi 262 (410)
T cd08238 189 GLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLMELT----GGQGFDDVF 262 (410)
T ss_pred HHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHHHHh----CCCCCCEEE
Confidence 445555565532 348999999999999998853211 221 12221 23444444332 134699988
Q ss_pred EcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 72 VDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 72 iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.... ....+..+.+.++++|.+++
T Consensus 263 d~~g---~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 263 VFVP---VPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred EcCC---CHHHHHHHHHHhccCCeEEE
Confidence 7543 24567788899998876554
No 311
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=90.95 E-value=1.9 Score=33.20 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=50.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..++.+++...+.++++++.+++..+.+++ .|.+.-+.... .+..+.+... .+.+|.++++.. ..
T Consensus 175 G~~~~~la~~~~g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~------~~~~d~vi~~~~---~~ 241 (338)
T PRK09422 175 GNLALQYAKNVFNAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK------TGGAHAAVVTAV---AK 241 (338)
T ss_pred HHHHHHHHHHhCCCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh------cCCCcEEEEeCC---CH
Confidence 3344445554347789999999988777743 35431111111 2223333333 235897777754 24
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
..++.+.+.|+++|.++.
T Consensus 242 ~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 242 AAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred HHHHHHHHhccCCCEEEE
Confidence 567888899999999885
No 312
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.89 E-value=2.2 Score=33.71 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=50.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|...-+.... .+..+.+.++. .+.+|+||--.. .
T Consensus 198 G~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~g~d~vid~~G---~ 265 (368)
T TIGR02818 198 GLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-----DGGVDYSFECIG---N 265 (368)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 4445556665533489999999998887754 45432222211 12333333332 236998874332 2
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
...+..+.+.++++ |.++.-
T Consensus 266 ~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 266 VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred HHHHHHHHHHhhcCCCeEEEE
Confidence 44577788899886 887753
No 313
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.87 E-value=5.1 Score=30.16 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=53.0
Q ss_pred HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+..+...+|+++|..-..+.. ....++|+..+ ..|+...-+.-. .+..|++++|-..-....++..+.
T Consensus 97 lLq~gAk~VyavDVG~~Ql~~------kLR~d~rV~~~E~tN~r~l~~~~~-----~~~~d~~v~DvSFISL~~iLp~l~ 165 (245)
T COG1189 97 LLQRGAKHVYAVDVGYGQLHW------KLRNDPRVIVLERTNVRYLTPEDF-----TEKPDLIVIDVSFISLKLILPALL 165 (245)
T ss_pred HHHcCCcEEEEEEccCCccCH------hHhcCCcEEEEecCChhhCCHHHc-----ccCCCeEEEEeehhhHHHHHHHHH
Confidence 335568899999997543321 22234566555 445554433321 357999999987666777888889
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
.++++++.++.
T Consensus 166 ~l~~~~~~~v~ 176 (245)
T COG1189 166 LLLKDGGDLVL 176 (245)
T ss_pred HhcCCCceEEE
Confidence 99999988875
No 314
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=90.81 E-value=0.44 Score=37.33 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=52.0
Q ss_pred CcccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCC
Q 031568 1 MHLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 1 ~g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~ 75 (157)
+|.|.++.+.. .-+-..+++|++......|.+|+.++++++++.+++-+..+.+ ...... ..+..||++.++++
T Consensus 111 tgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 111 TGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCMCNPP 187 (419)
T ss_pred CchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEecCCc
Confidence 35566665552 2467889999999999999999999999999999988775543 211100 01234888888764
No 315
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=90.80 E-value=1.3 Score=33.10 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=39.1
Q ss_pred cccHHHHHh----hCCCcEEEEEeCChhH--HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMT----GNKILQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~----~~~~~~v~~ve~~~~~--~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|=+|++++. +..+.+|..||-||.. .+..+...+...+++++.+..++=...+....+. .....||+|++|.
T Consensus 14 GKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvDl 91 (231)
T PF07015_consen 14 GKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVDL 91 (231)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEeC
Confidence 335555433 2358999999988764 3332222222345567777766533333322100 0124599999995
No 316
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=90.68 E-value=1 Score=34.82 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=37.3
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH-HHHhcccCCeEEEEeccc
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~-~~~~~L~~gG~iv~~~~~ 102 (157)
+|.|+-.+..+.++.-.+ -.+.||+||+.+.. ...+. .+.+.++|+|+|++++.-
T Consensus 201 kVhFLPld~~~~L~~K~k---y~~~Fd~ifvs~s~---vh~L~p~l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSK---YQNFFDLIFVSCSM---VHFLKPELFQALAPDAVLVVETAK 256 (289)
T ss_pred EEEEeCchHHHHHhhHHh---hcCCCCEEEEhhhh---HhhcchHHHHHhCCCCEEEEEcch
Confidence 466776777666655322 25789999998752 22222 356788999999999863
No 317
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.58 E-value=0.92 Score=30.90 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcC--CCCcEEEEEccHHHH
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSV 53 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~ 53 (157)
.++.+|++||.+++..+.+++..++.+ +..++++..++..+.
T Consensus 51 ~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 51 SPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred CCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence 379999999999999999999998887 445677776665543
No 318
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=90.47 E-value=2.4 Score=32.61 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
+..+|+. .+.++++++.+++..+.+++ .|.+.-+.....+..+.+..+. ....+|+||-.... ....
T Consensus 160 a~q~a~~-~G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~~~d~vid~~g~----~~~~ 226 (324)
T cd08291 160 LVRLCKA-DGIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKLNATIFFDAVGG----GLTG 226 (324)
T ss_pred HHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCCCCcEEEECCCc----HHHH
Confidence 3334444 47789999999988777765 4553223222334444444332 13469988733221 2234
Q ss_pred HHHhcccCCeEEEEe
Q 031568 85 RLMKLLKVGGIAVYD 99 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~ 99 (157)
...+.++++|.++.-
T Consensus 227 ~~~~~l~~~G~~v~~ 241 (324)
T cd08291 227 QILLAMPYGSTLYVY 241 (324)
T ss_pred HHHHhhCCCCEEEEE
Confidence 557788999998763
No 319
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=90.34 E-value=0.82 Score=34.09 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHH-HHHHHHHcCCCCcEE-EEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSVLD-QLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~-a~~~~~~~~~~~~i~-~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|.-|..++.. +..+|+++|+++.++.. .+++ +++. +-..|+..... .+. ..-..+|++|+..
T Consensus 87 G~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~~~~DvsfiS~---- 151 (228)
T TIGR00478 87 GGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDFATFDVSFISL---- 151 (228)
T ss_pred CHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCceeeeEEEeeh----
Confidence 4445545543 56799999999977654 2222 1222 22222221100 000 0123677777653
Q ss_pred cHHHHHHHHhcccCCeEEEE
Q 031568 79 YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+..+.++|++ |.+++
T Consensus 152 -~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 152 -ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred -HhHHHHHHHHhCc-CeEEE
Confidence 3357778888888 76664
No 320
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.31 E-value=3.7 Score=31.25 Aligned_cols=86 Identities=16% Similarity=0.141 Sum_probs=51.3
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-------HHcCC-C--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALSVLDQLLKYSENE 64 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-------~~~~~-~--------~~i~~~~~d~~~~l~~~~~~~~~~ 64 (157)
||.+.+..++.. +.+|+.+|++++.++.+++.+ .+.|. . .++++ ..|..+ +
T Consensus 14 mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~----~------- 80 (282)
T PRK05808 14 MGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD----L------- 80 (282)
T ss_pred HHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH----h-------
Confidence 455555555443 669999999999987665432 22231 1 12332 233221 1
Q ss_pred CceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEEe
Q 031568 65 GSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 65 ~~fD~I~iD~~~~~--~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+..|+|+.-..... -.++++.+.+.++++.+++.+
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 35799998754322 246788888889998888554
No 321
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.12 E-value=2.1 Score=34.08 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=53.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|..+..++...+..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+. ....+|+||--...
T Consensus 197 G~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----~~~~~D~vld~vg~~~~~ 268 (386)
T cd08283 197 GLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----GGRGPDVCIDAVGMEAHG 268 (386)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----CCCCCCEEEECCCCcccc
Confidence 334445566554457999999999988887742 22 123223332 333343332 13469988743211
Q ss_pred --------------cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 --------------DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 --------------~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......++.+.+.++++|.++.-
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 269 SPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred cccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 11244678888999999999864
No 322
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=89.79 E-value=3 Score=32.83 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=49.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc--cHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~--d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|..++.+|+......+++++.+++..+.+++ .|...-+..... +..+.+..+. .+.+|+|+ |.. ..
T Consensus 196 G~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~-----~~~~d~vi-d~~--g~ 263 (365)
T cd05279 196 GLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT-----DGGVDYAF-EVI--GS 263 (365)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh-----CCCCcEEE-ECC--CC
Confidence 4444555555543458888888887776643 444322222222 3333333332 34699988 432 12
Q ss_pred HHHHHHHHhccc-CCeEEEE
Q 031568 80 CNYHERLMKLLK-VGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~-~gG~iv~ 98 (157)
...+..+.+.|+ ++|.++.
T Consensus 264 ~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 264 ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred HHHHHHHHHHhccCCCEEEE
Confidence 346777888899 9999885
No 323
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.75 E-value=0.37 Score=38.52 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=54.4
Q ss_pred cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|++|.-+++ ..+.+++.++|.++..++..++.+...|.+ .++...+|+... .... .-...-.|++|++.
T Consensus 225 g~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~----~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 225 GNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE----KFRDVTYILVDPSC 294 (413)
T ss_pred ccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc----cccceeEEEeCCCC
Confidence 788988888 445999999999999999999999999986 677789998875 2211 12457788888753
No 324
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.74 E-value=4.1 Score=31.13 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=48.3
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+|+. -+.+|+++..+++..+.+++ .|.+.-+.....+..+.+..+. .+.+|+|| |+.. ...++.+.
T Consensus 163 lA~~-~G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-----~~gvd~vl-d~~g---~~~~~~~~ 228 (329)
T cd08294 163 IAKI-KGCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-----PDGIDCYF-DNVG---GEFSSTVL 228 (329)
T ss_pred HHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-----CCCcEEEE-ECCC---HHHHHHHH
Confidence 4444 47789999988888777655 4553222222334444444332 34699887 4422 24567888
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
+.|+++|.++.
T Consensus 229 ~~l~~~G~iv~ 239 (329)
T cd08294 229 SHMNDFGRVAV 239 (329)
T ss_pred HhhccCCEEEE
Confidence 99999999985
No 325
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.65 E-value=2.8 Score=27.05 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=47.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
.+.+|+.+|.+++.++.+++ . .+.++.||+.+. +.+.. -++.|.|++..+....--..-...+.+
T Consensus 20 ~~~~vvvid~d~~~~~~~~~----~----~~~~i~gd~~~~~~l~~a~-----i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELRE----E----GVEVIYGDATDPEVLERAG-----IEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHH----T----TSEEEES-TTSHHHHHHTT-----GGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCcHHHHHHHh----c----ccccccccchhhhHHhhcC-----ccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 34599999999999877755 2 266899998754 44431 367999998865432222233334667
Q ss_pred cCCeEEEEe
Q 031568 91 KVGGIAVYD 99 (157)
Q Consensus 91 ~~gG~iv~~ 99 (157)
.|...+++.
T Consensus 87 ~~~~~ii~~ 95 (116)
T PF02254_consen 87 NPDIRIIAR 95 (116)
T ss_dssp TTTSEEEEE
T ss_pred CCCCeEEEE
Confidence 777777763
No 326
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=10 Score=30.91 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=52.7
Q ss_pred cEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHH--
Q 031568 15 LQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKDN--YCNYHER-- 85 (157)
Q Consensus 15 ~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~-- 85 (157)
.-++|-| ..+.+.++.++|..+.++.--......|...+ +..++ .+.||+|++|..-+. -..+|++
T Consensus 132 ~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-----ke~fdvIIvDTSGRh~qe~sLfeEM~ 206 (483)
T KOG0780|consen 132 VALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-----KENFDVIIVDTSGRHKQEASLFEEMK 206 (483)
T ss_pred eeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-----hcCCcEEEEeCCCchhhhHHHHHHHH
Confidence 3456666 46889999999999887643334444554443 34443 467999999985332 2334554
Q ss_pred -HHhcccCCeEEEEec
Q 031568 86 -LMKLLKVGGIAVYDN 100 (157)
Q Consensus 86 -~~~~L~~gG~iv~~~ 100 (157)
+.+.++|+-+|.+=+
T Consensus 207 ~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 207 QVSKAIKPDEIIFVMD 222 (483)
T ss_pred HHHhhcCCCeEEEEEe
Confidence 457899998876643
No 327
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.50 E-value=3 Score=33.56 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=24.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLP 32 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~ 32 (157)
||+.++.+++. +-+|+++|++++.++.+++
T Consensus 11 vGl~~A~~lA~--G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 11 VGLSNGLLIAQ--NHEVVALDILPSRVAMLND 40 (388)
T ss_pred HHHHHHHHHHh--CCcEEEEECCHHHHHHHHc
Confidence 67777766553 6789999999999988866
No 328
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=89.37 E-value=0.54 Score=29.92 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=39.5
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEecccCC--ccccCCCCC---CCCCcccchHHHHHHHHHHhhcCCC
Q 031568 64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWG--GTVAVPEEQ---VPDHFRGSSRQAILDLNRSLADDPR 138 (157)
Q Consensus 64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (157)
+..||++++|+...-.++.+..+...++-||+++.=-.-+. ....++... .++.. .....-++.|.+.+.++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~ 87 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPG 87 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTT
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcC
Confidence 46799999999777778899999999999999987311110 000000000 00111 1134567888888888887
Q ss_pred ee
Q 031568 139 VQ 140 (157)
Q Consensus 139 ~~ 140 (157)
+.
T Consensus 88 i~ 89 (92)
T PF08351_consen 88 II 89 (92)
T ss_dssp S-
T ss_pred Cc
Confidence 54
No 329
>PRK11524 putative methyltransferase; Provisional
Probab=89.34 E-value=0.65 Score=35.61 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=31.3
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK 36 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~ 36 (157)
||=.|+.+|+..-+-+.+++|++++.++.|++.++.
T Consensus 217 ~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 217 AGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 677788888876799999999999999999998864
No 330
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=89.19 E-value=3.9 Score=33.98 Aligned_cols=90 Identities=22% Similarity=0.369 Sum_probs=61.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------------
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------- 77 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---------------- 77 (157)
...+++.|+++....+|+-|+--.|++..+.+.++|.......... ...+.||+|+.+++..
T Consensus 214 ~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~--~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~ 291 (489)
T COG0286 214 EIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK--DDKGKFDFVIANPPFSGKGWGGDLLESEQDER 291 (489)
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccccc--CCccceeEEEeCCCCCcccccccccccccccc
Confidence 3779999999999999999998888864466777776544221000 0136799998765311
Q ss_pred ------------ccHHHHHHHHhcccCCe---EEEEecccCCc
Q 031568 78 ------------NYCNYHERLMKLLKVGG---IAVYDNTLWGG 105 (157)
Q Consensus 78 ------------~~~~~~~~~~~~L~~gG---~iv~~~~~~~~ 105 (157)
.+..+++.+...|+||| +++.++++++|
T Consensus 292 ~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~ 334 (489)
T COG0286 292 FFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRG 334 (489)
T ss_pred ccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCC
Confidence 12457778889999865 55556776655
No 331
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.03 E-value=2.5 Score=31.83 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=42.8
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH------HHHHHHhhcCCCCCceeEEEEcCCCc-----ccHHH--
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVLDQLLKYSENEGSFDYAFVDADKD-----NYCNY-- 82 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~------~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~~~~-- 82 (157)
+|++||+.+-+ .+. .|.-+++|+. .++..+. .++-|+|++|+.+. ...+|
T Consensus 76 kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~hfg-----gekAdlVvcDGAPDvTGlHd~DEy~Q 138 (294)
T KOG1099|consen 76 KIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEHFG-----GEKADLVVCDGAPDVTGLHDLDEYVQ 138 (294)
T ss_pred cEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHHhC-----CCCccEEEeCCCCCccccccHHHHHH
Confidence 49999987643 332 4556667643 3455552 46899999998543 22332
Q ss_pred -------HHHHHhcccCCeEEEEe
Q 031568 83 -------HERLMKLLKVGGIAVYD 99 (157)
Q Consensus 83 -------~~~~~~~L~~gG~iv~~ 99 (157)
+......|+|||.+|..
T Consensus 139 ~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 139 AQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHHHHHHhheecCCCeeehh
Confidence 22334689999999974
No 332
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.03 E-value=0.48 Score=38.45 Aligned_cols=46 Identities=26% Similarity=0.220 Sum_probs=40.9
Q ss_pred hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHH
Q 031568 10 TGNKILQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD 55 (157)
Q Consensus 10 ~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~ 55 (157)
+...+.+|++-|.+|++++..+.|+..+.+.+. |+++..|+.+++.
T Consensus 267 a~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 267 AAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred hhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 344679999999999999999999999988766 9999999999884
No 333
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.95 E-value=1.9 Score=30.55 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=44.9
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEE-EEEccHHHHHHHHhhcCCCCCceeEEEEcC------------
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDA------------ 74 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~------------ 74 (157)
+|.++..++|++||.++--++ .+ ..+++. +... ++.....++ .++||++.+-+
T Consensus 18 ~aL~~GA~~iltveyn~L~i~--~~------~~dr~ssi~p~---df~~~~~~y---~~~fD~~as~~siEh~GLGRYGD 83 (177)
T PF03269_consen 18 MALQHGAAKILTVEYNKLEIQ--EE------FRDRLSSILPV---DFAKNWQKY---AGSFDFAASFSSIEHFGLGRYGD 83 (177)
T ss_pred HHHHcCCceEEEEeecccccC--cc------cccccccccHH---HHHHHHHHh---hccchhhheechhccccccccCC
Confidence 455667889999998853221 11 112322 2222 333333222 56899986522
Q ss_pred --CCcccHHHHHHHHhcccCCeEEEEecc
Q 031568 75 --DKDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 75 --~~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+.......+..+...||+||.+...-.
T Consensus 84 Pidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 84 PIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred CCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 112234556677789999999987543
No 334
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.77 E-value=4.1 Score=32.04 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=50.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|...-+.... .+..+.+..+. .+.+|+++ |+. ..
T Consensus 200 G~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~-----~~~~d~vi-d~~--G~ 267 (369)
T cd08301 200 GLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT-----GGGVDYSF-ECT--GN 267 (369)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh-----CCCCCEEE-ECC--CC
Confidence 4455556665543489999999988877644 45432222221 12333344332 33699776 432 12
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...+..+.+.+++| |.++.-.
T Consensus 268 ~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 268 IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred hHHHHHHHHHhhcCCCEEEEEC
Confidence 44567778889996 8887643
No 335
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.63 E-value=0.26 Score=38.46 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=38.5
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEE----EcCCCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~----iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+-.||..+..+.-. ..+.||.|+ ||... +..++++.+...|+|||++|--..+
T Consensus 239 ~fsicaGDF~evy~~s~----~~~~~d~VvTcfFIDTa~-NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 239 SFSICAGDFLEVYGTSS----GAGSYDVVVTCFFIDTAH-NILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred CccccccceeEEecCcC----CCCccceEEEEEEeechH-HHHHHHHHHHHhccCCcEEEeccce
Confidence 34455677776654311 134799994 67653 6788999999999999999864443
No 336
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.40 E-value=4.3 Score=29.71 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=49.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..+++.. +.+|++++.+++..+.+++ .+...-+.....+..+.+. .. ..+.+|+++..... ..
T Consensus 147 G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~~d~vi~~~~~---~~ 213 (271)
T cd05188 147 GLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGGADVVIDAVGG---PE 213 (271)
T ss_pred HHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCCCCEEEECCCC---HH
Confidence 33444455543 5899999999887776644 2322112222222322222 11 24579999865432 24
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+.+.++++|.++.-
T Consensus 214 ~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 214 TLAQALRLLRPGGRIVVV 231 (271)
T ss_pred HHHHHHHhcccCCEEEEE
Confidence 567778899999998863
No 337
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.21 E-value=9.1 Score=30.22 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~~~~~~~~~~~~~ 89 (157)
-++.|+-+|+|.+.+.+....+ + .|++....+...+-... .+.|+++-- +......-..++..+.
T Consensus 190 lgA~Vtild~n~~rl~~ldd~f---~--~rv~~~~st~~~iee~v-------~~aDlvIgaVLIpgakaPkLvt~e~vk~ 257 (371)
T COG0686 190 LGADVTILDLNIDRLRQLDDLF---G--GRVHTLYSTPSNIEEAV-------KKADLVIGAVLIPGAKAPKLVTREMVKQ 257 (371)
T ss_pred cCCeeEEEecCHHHHhhhhHhh---C--ceeEEEEcCHHHHHHHh-------hhccEEEEEEEecCCCCceehhHHHHHh
Confidence 4899999999999887766544 2 47889988888765544 468888632 2222233356777889
Q ss_pred ccCCeEEEEecccCCc
Q 031568 90 LKVGGIAVYDNTLWGG 105 (157)
Q Consensus 90 L~~gG~iv~~~~~~~~ 105 (157)
++||++||=-.+-.+|
T Consensus 258 MkpGsVivDVAiDqGG 273 (371)
T COG0686 258 MKPGSVIVDVAIDQGG 273 (371)
T ss_pred cCCCcEEEEEEEcCCC
Confidence 9999999754443433
No 338
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.06 E-value=5.4 Score=31.38 Aligned_cols=86 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|...-+.... .+..+.+..+. ...+|+||--.. .
T Consensus 197 G~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~-----~~g~d~vid~~g---~ 264 (365)
T cd08277 197 GLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT-----GGGVDYSFECTG---N 264 (365)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 4445556665533489999999888777744 45432122211 12233344332 246998884322 2
Q ss_pred HHHHHHHHhcccCC-eEEEEe
Q 031568 80 CNYHERLMKLLKVG-GIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~ 99 (157)
...+..+.+.++++ |.++.-
T Consensus 265 ~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 265 ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred hHHHHHHHHhcccCCCEEEEE
Confidence 34567788899885 888763
No 339
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.98 E-value=1.7 Score=33.45 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=45.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++......|+++|.+++.++.|++. . ++ |..+. . ...+|+|| |+. ....
T Consensus 157 G~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~Dvvi-d~~--G~~~ 212 (308)
T TIGR01202 157 GRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDYRAIY-DAS--GDPS 212 (308)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCCCEEE-ECC--CCHH
Confidence 55566666665444577889888776665431 1 11 11110 1 34699887 432 2244
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.++++|.++.-
T Consensus 213 ~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 213 LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHhhhcCcEEEEE
Confidence 678889999999999863
No 340
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.96 E-value=4.9 Score=28.33 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=21.7
Q ss_pred CCceeEEEEcCCCcccHHHH----HHHHhcccCCeEEEE
Q 031568 64 EGSFDYAFVDADKDNYCNYH----ERLMKLLKVGGIAVY 98 (157)
Q Consensus 64 ~~~fD~I~iD~~~~~~~~~~----~~~~~~L~~gG~iv~ 98 (157)
.++||+|++|++-- ..+.+ +.+.-++++++.++.
T Consensus 84 ~~~~d~vv~DPPFl-~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 84 KGKFDVVVIDPPFL-SEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CCCceEEEECCCCC-CHHHHHHHHHHHHHHhCccceEEE
Confidence 46899999999752 23333 333345677677665
No 341
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.96 E-value=6.5 Score=30.44 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568 7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 85 (157)
Q Consensus 7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~ 85 (157)
.+|+. -+.+|+++..+++..+.+++. .|.+.-+..... +..+.+.... .+.+|+|| |+.- ...+..
T Consensus 170 qlAk~-~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~-----~~gvd~v~-d~~g---~~~~~~ 236 (338)
T cd08295 170 QLAKL-KGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF-----PNGIDIYF-DNVG---GKMLDA 236 (338)
T ss_pred HHHHH-cCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC-----CCCcEEEE-ECCC---HHHHHH
Confidence 34444 477899999888887766552 355322221112 4444444331 34699988 4422 245778
Q ss_pred HHhcccCCeEEEE
Q 031568 86 LMKLLKVGGIAVY 98 (157)
Q Consensus 86 ~~~~L~~gG~iv~ 98 (157)
+.+.|+++|.++.
T Consensus 237 ~~~~l~~~G~iv~ 249 (338)
T cd08295 237 VLLNMNLHGRIAA 249 (338)
T ss_pred HHHHhccCcEEEE
Confidence 8899999999985
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.90 E-value=4.5 Score=31.21 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=45.8
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+|+.....++++++.+++..+.+++ .|...-+.....+..+.+..+. ..+.+|++| |+.. ....+..+.
T Consensus 186 lak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~~~~d~vl-d~~g--~~~~~~~~~ 254 (347)
T cd05278 186 GARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GGRGVDCVI-EAVG--FEETFEQAV 254 (347)
T ss_pred HHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CCCCCcEEE-EccC--CHHHHHHHH
Confidence 4444432478888888777666554 3432112222333434444332 235699887 4321 124677888
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
+.|+++|.++.
T Consensus 255 ~~l~~~G~~v~ 265 (347)
T cd05278 255 KVVRPGGTIAN 265 (347)
T ss_pred HHhhcCCEEEE
Confidence 99999999885
No 343
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.89 E-value=1.2 Score=36.50 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH
Q 031568 8 FMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS 52 (157)
Q Consensus 8 l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 52 (157)
+++ +..+-.|+++|.-..|.+.|++-..++|.+++|++|..-..+
T Consensus 82 mMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 82 MMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred HHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 444 435668999999999999999999999999999998765544
No 344
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.35 E-value=6.5 Score=30.79 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
||++. +++++++-.+++..+. +.+.|.+.-+.+...|..+.+.++. ....+|+||--- -.+.+....
T Consensus 162 lAk~~-G~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t----~g~gvDvv~D~v----G~~~~~~~l 228 (326)
T COG0604 162 LAKAL-GATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELT----GGKGVDVVLDTV----GGDTFAASL 228 (326)
T ss_pred HHHHc-CCcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHc----CCCCceEEEECC----CHHHHHHHH
Confidence 55554 3366666666655543 3445655456667777777776663 234699998432 245677788
Q ss_pred hcccCCeEEEEe
Q 031568 88 KLLKVGGIAVYD 99 (157)
Q Consensus 88 ~~L~~gG~iv~~ 99 (157)
..|+++|.++.-
T Consensus 229 ~~l~~~G~lv~i 240 (326)
T COG0604 229 AALAPGGRLVSI 240 (326)
T ss_pred HHhccCCEEEEE
Confidence 999999999873
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.33 E-value=3.2 Score=32.44 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=47.8
Q ss_pred cccHHHHHhhCCCcEEEEEeC---ChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~---~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|+.+..+++.. +.+|++++. +++..+.++ +.|.. .+.....+..+ .. . .+.+|+||--..
T Consensus 185 G~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-~------~~~~d~vid~~g--- 247 (355)
T cd08230 185 GLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-L------VGEFDLIIEATG--- 247 (355)
T ss_pred HHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-h------cCCCCEEEECcC---
Confidence 44455555554 568999987 566666554 34543 22211122222 11 1 346998875443
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....+..+.+.|+++|.++.-.
T Consensus 248 ~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CHHHHHHHHHHccCCcEEEEEe
Confidence 2346788889999999998643
No 346
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=87.20 E-value=9 Score=27.52 Aligned_cols=79 Identities=6% Similarity=-0.086 Sum_probs=48.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----~~~~~~~~~~ 88 (157)
+.+|..+|-++......+..++..+.. .+-....+..+.+..+. ...+|+|++|...+. -.+.++.+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~~~~~~~-----~~~~DlvllD~~l~~~~~~~g~~~~~~l~~ 76 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWV-NVVGEFEDSTALINNLP-----KLDAHVLITDLSMPGDKYGDGITLIKYIKR 76 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCC-EEEEEECCHHHHHHHHH-----hCCCCEEEEeCcCCCCCCCCHHHHHHHHHH
Confidence 468999999999998888888765421 22334566777666553 356999999964332 3445555544
Q ss_pred cccCCeEEEE
Q 031568 89 LLKVGGIAVY 98 (157)
Q Consensus 89 ~L~~gG~iv~ 98 (157)
....-.++++
T Consensus 77 ~~~~~~iIvl 86 (216)
T PRK10840 77 HFPSLSIIVL 86 (216)
T ss_pred HCCCCcEEEE
Confidence 3222344444
No 347
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.19 E-value=1.4 Score=30.15 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=19.3
Q ss_pred hCCCcEEEEEeCChhHHHHHHHH--HHHcC
Q 031568 11 GNKILQITAIDVNRETYEIGLPI--IKKAG 38 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~--~~~~~ 38 (157)
..++++|+++|.+|..++..+++ +..++
T Consensus 20 ~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 20 CGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp TS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred cCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 55899999999999999999999 65553
No 348
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=87.15 E-value=5.2 Score=32.10 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|+.++.+|+......++++|.+++..+.|++ .|.. .+.... .+..+.+..+. ....+|+||--...+.
T Consensus 198 G~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----~~~g~Dvvid~~G~~~~~ 268 (393)
T TIGR02819 198 GLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----GEPEVDCAVDCVGFEARG 268 (393)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----CCCCCcEEEECCCCcccc
Confidence 4455556665544446677888888877765 3542 221111 23444444332 1346998874333211
Q ss_pred ---------cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 ---------YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ---------~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....++.+.+++++||.++.-..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 269 HGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred ccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 12478888999999999997443
No 349
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=87.07 E-value=1.3 Score=32.38 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=51.0
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~ 87 (157)
......|++.|++|-....++-|.+.+|+ .|.+...|..- + +..||+|+..- ++..-...+. +.
T Consensus 99 ~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~--------~~~~Dl~LagDlfy~~~~a~~l~~-~~ 165 (218)
T COG3897 99 RAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--S--------PPAFDLLLAGDLFYNHTEADRLIP-WK 165 (218)
T ss_pred HhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--C--------CcceeEEEeeceecCchHHHHHHH-HH
Confidence 44577899999999999999999999997 48888888764 1 56799998632 2222233344 44
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
..|+..|..|+
T Consensus 166 ~~l~~~g~~vl 176 (218)
T COG3897 166 DRLAEAGAAVL 176 (218)
T ss_pred HHHHhCCCEEE
Confidence 44444444433
No 350
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=86.87 E-value=0.87 Score=34.78 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=37.4
Q ss_pred EEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 44 NFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 44 ~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+++.+|..+ +| + ++++.|+++..-. -.++.+++.++.+.|++||.+-+-.+.
T Consensus 213 ~V~~cDm~~-vP-l-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 213 RVIACDMRN-VP-L-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred ceeeccccC-Cc-C-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 456777766 33 1 3677888776432 236788999999999999999887664
No 351
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.73 E-value=5.2 Score=30.58 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=50.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--------CCC---------CcEEEEEccHHHHHHHHhhcCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSVLDQLLKYSEN 63 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~l~~~~~~~~~ 63 (157)
||.+.+..++. .+.+|+.+|.+++.++.+++.+++. ++. .++++ ..|..+.+
T Consensus 14 mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~--------- 82 (287)
T PRK08293 14 LGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV--------- 82 (287)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh---------
Confidence 45444444433 4679999999999998887764321 111 13332 23433322
Q ss_pred CCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEE
Q 031568 64 EGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 64 ~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~ 98 (157)
..-|+|+.-.+.. ....+++.+.+.++++.+|+.
T Consensus 83 -~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 -KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred -cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3468888765422 234567777777777776644
No 352
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=86.67 E-value=1.2 Score=35.26 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=48.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|-.|-.|+.. +.+|++||..+-. ..+. -+++|+.+.+|...+.+. .+.+|++++|... ....
T Consensus 223 GGWT~~L~~r--G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~-------~~~vDwvVcDmve-~P~r 284 (357)
T PRK11760 223 GGWTYQLVRR--GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP-------RKNVDWLVCDMVE-KPAR 284 (357)
T ss_pred cHHHHHHHHc--CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC-------CCCCCEEEEeccc-CHHH
Confidence 3345555544 6699999955421 2222 235899999999887642 4579999999853 2345
Q ss_pred HHHHHHhcccCC
Q 031568 82 YHERLMKLLKVG 93 (157)
Q Consensus 82 ~~~~~~~~L~~g 93 (157)
..+.+.++|..|
T Consensus 285 va~lm~~Wl~~g 296 (357)
T PRK11760 285 VAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHhcC
Confidence 566666777666
No 353
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.51 E-value=2.1 Score=30.58 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-------CC-C--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-------GV-D--------HKINFIESEALSVLDQLLKYSENE 64 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~l~~~~~~~~~~ 64 (157)
||-+-+.+++.. +.+|+.+|.+++.++.+++.+++. +. . .++++. .|..+. .
T Consensus 10 mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~----------~ 77 (180)
T PF02737_consen 10 MGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA----------V 77 (180)
T ss_dssp HHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG----------C
T ss_pred HHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH----------h
Confidence 455555555554 899999999999999988877651 11 1 123322 232221 2
Q ss_pred CceeEEEEcCC--CcccHHHHHHHHhcccCCeEEEEecc
Q 031568 65 GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 65 ~~fD~I~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..|+|+=-.. .+.-.++|..+.+.+.|+.+|..+..
T Consensus 78 -~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 -DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp -TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred -hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 5788874322 11235678888889999999877543
No 354
>PRK09028 cystathionine beta-lyase; Provisional
Probab=86.27 E-value=12 Score=30.23 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=55.2
Q ss_pred cHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccH
Q 031568 4 PTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYC 80 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~ 80 (157)
++++++...|+.+|+..+.. +.....+...+...|. .+.++..+..+.+.+.. ..+-.+|++..... ...
T Consensus 90 ~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l-----~~~TklV~lespsNPtg~v 162 (394)
T PRK09028 90 SNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI-----RPNTKVLFLESPGSITMEV 162 (394)
T ss_pred HHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc-----CcCceEEEEECCCCCCCcH
Confidence 34444445578899888754 3555556666666665 34454333233344332 33567898875321 123
Q ss_pred HHHHHHHhcccC-CeEEEEecccCCccccCC
Q 031568 81 NYHERLMKLLKV-GGIAVYDNTLWGGTVAVP 110 (157)
Q Consensus 81 ~~~~~~~~~L~~-gG~iv~~~~~~~~~~~~~ 110 (157)
..++.+.++.+. |.++++||+...+....|
T Consensus 163 ~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P 193 (394)
T PRK09028 163 QDVPTLSRIAHEHDIVVMLDNTWASPINSRP 193 (394)
T ss_pred HHHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence 345555555554 566778888755533333
No 355
>PRK13699 putative methylase; Provisional
Probab=85.67 E-value=1.6 Score=32.43 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=31.5
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA 37 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~ 37 (157)
+|-.|...|+..-+.+.+++|++++..+.|.+.++..
T Consensus 172 ~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 172 AGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 5777888887666889999999999999999988764
No 356
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=85.23 E-value=1.2 Score=33.61 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=55.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC---CCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~---~~~~~~~~~~~~~~~ 89 (157)
.-.+++.+|.+..|++.++..- ..++ .+....+|- ++++ +. ++++|+|+..- +....+..+.+|...
T Consensus 94 ~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld-f~-----ens~DLiisSlslHW~NdLPg~m~~ck~~ 163 (325)
T KOG2940|consen 94 GVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD-FK-----ENSVDLIISSLSLHWTNDLPGSMIQCKLA 163 (325)
T ss_pred chhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc-cc-----ccchhhhhhhhhhhhhccCchHHHHHHHh
Confidence 3678999999999999887632 1222 244555664 3454 32 67999998754 234577889999999
Q ss_pred ccCCeEEEEe
Q 031568 90 LKVGGIAVYD 99 (157)
Q Consensus 90 L~~gG~iv~~ 99 (157)
|||+|.++..
T Consensus 164 lKPDg~Fias 173 (325)
T KOG2940|consen 164 LKPDGLFIAS 173 (325)
T ss_pred cCCCccchhH
Confidence 9999999874
No 357
>PRK08114 cystathionine beta-lyase; Provisional
Probab=84.74 E-value=11 Score=30.57 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=55.1
Q ss_pred cHHHHHhhCCCcEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--
Q 031568 4 PTKLFMTGNKILQITAID-VNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNY-- 79 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~-- 79 (157)
++++++...++.+|++.+ ........+++.+++.|+ ++.++. .|..+ +.... .+.-.+|++.......
T Consensus 91 ~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~~~-l~~~l-----~~~TrlV~~EtpsNp~~~ 162 (395)
T PRK08114 91 ANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIGAD-IAKLI-----QPNTKVVFLESPGSITME 162 (395)
T ss_pred HHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH-HHHhc-----CCCceEEEEECCCCCCCE
Confidence 344444445788888765 445667777777888876 366554 34333 33332 3346899988643211
Q ss_pred HHHHHHHHhccc---CCeEEEEecccCCccccCC
Q 031568 80 CNYHERLMKLLK---VGGIAVYDNTLWGGTVAVP 110 (157)
Q Consensus 80 ~~~~~~~~~~L~---~gG~iv~~~~~~~~~~~~~ 110 (157)
..-++.+.++.+ +|-.+++||....+....|
T Consensus 163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p 196 (395)
T PRK08114 163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA 196 (395)
T ss_pred eecHHHHHHHHHHhCCCCEEEEECCCccccccCH
Confidence 111333333333 4578888998765544333
No 358
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.72 E-value=6.1 Score=33.09 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=48.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE---------------EccHHHHHHH-HhhcCCCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEALSVLDQ-LLKYSENEG 65 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~---------------~~d~~~~l~~-~~~~~~~~~ 65 (157)
|++++..+... ++.|+.+|.+++..+.+++ .|.. .+++- -.+..+...+ +.+ .-.
T Consensus 176 Gl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e---~~~ 246 (511)
T TIGR00561 176 GLAAIGAANSL-GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA---QAK 246 (511)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHHHHHHHHHH---HhC
Confidence 45555555554 6789999999998777765 2332 11111 1111111111 110 024
Q ss_pred ceeEEEEcC---CCcccHHHHHHHHhcccCCeEEEE
Q 031568 66 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 66 ~fD~I~iD~---~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+|+||.-. ..+...-+.++..+.+|||++|+-
T Consensus 247 ~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 247 EVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 699997654 222222256677899999999873
No 359
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=84.47 E-value=9.3 Score=30.30 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=49.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc---cHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+..... +..+.+..+. ....+|+|+ |+.- .
T Consensus 216 G~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----~g~gvDvvl-d~~g-~ 285 (384)
T cd08265 216 GLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----KGWGADIQV-EAAG-A 285 (384)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----CCCCCCEEE-ECCC-C
Confidence 4445556655543389999988876555544 455321221111 3333333332 234699887 5422 2
Q ss_pred cHHHHHHHHhcccCCeEEEE
Q 031568 79 YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~ 98 (157)
....++.+.+.|+++|.++.
T Consensus 286 ~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 286 PPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred cHHHHHHHHHHHHcCCEEEE
Confidence 24467788889999999985
No 360
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=84.23 E-value=11 Score=30.31 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=54.0
Q ss_pred HHHHhhCCCcEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHH
Q 031568 6 KLFMTGNKILQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY 82 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~ 82 (157)
++++...++.+|++.+ .........++.+.+.|+ .+.++..+-.+.+.... .+.-++||+...... -...
T Consensus 86 ~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~~~l~~~l-----~~~t~~v~~EspsNP~l~v~D 158 (386)
T PF01053_consen 86 ALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDLEALEAAL-----RPNTKLVFLESPSNPTLEVPD 158 (386)
T ss_dssp HHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSHHHHHHHH-----CTTEEEEEEESSBTTTTB---
T ss_pred HHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhHHHHHhhc-----cccceEEEEEcCCCccccccc
Confidence 3444455788887776 467777888888888776 36666543233444332 457999999864221 1222
Q ss_pred HHHHHhcccCC--eEEEEecccCCc
Q 031568 83 HERLMKLLKVG--GIAVYDNTLWGG 105 (157)
Q Consensus 83 ~~~~~~~L~~g--G~iv~~~~~~~~ 105 (157)
++.+.++.+.. -.+++||.+...
T Consensus 159 l~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 159 LEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred HHHHHHHHHHhCCceEEeeccccce
Confidence 44455555554 467778876433
No 361
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=83.97 E-value=6.7 Score=30.46 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=43.8
Q ss_pred HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568 6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 85 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~ 85 (157)
..+|+. -+.+|++++.+++..+.+++ .|.+. ++. ..+. ..+.+|.++.... ....+..
T Consensus 182 ~~~a~~-~G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~~~~~d~~i~~~~---~~~~~~~ 239 (329)
T TIGR02822 182 AQVALA-QGATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------PPEPLDAAILFAP---AGGLVPP 239 (329)
T ss_pred HHHHHH-CCCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------CcccceEEEECCC---cHHHHHH
Confidence 334444 36688888988887766554 55432 111 0010 0235887664322 1346888
Q ss_pred HHhcccCCeEEEEec
Q 031568 86 LMKLLKVGGIAVYDN 100 (157)
Q Consensus 86 ~~~~L~~gG~iv~~~ 100 (157)
+.+.|++||.++.-.
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 889999999998743
No 362
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=83.81 E-value=12 Score=29.02 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 8 FMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 8 l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
++... +.+ |+.++.+++..+.+++ .|...-+.....+..+.+..+. ..+.+|+|+-.... ...+..+
T Consensus 180 la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~~~d~vld~~g~---~~~~~~~ 247 (340)
T TIGR00692 180 VAKAS-GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGEGVDVFLEMSGA---PKALEQG 247 (340)
T ss_pred HHHHc-CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCCCCCEEEECCCC---HHHHHHH
Confidence 44443 554 7777777766655543 3432112222334444444332 23569999854221 3456777
Q ss_pred HhcccCCeEEEEe
Q 031568 87 MKLLKVGGIAVYD 99 (157)
Q Consensus 87 ~~~L~~gG~iv~~ 99 (157)
.+.|+++|.++.-
T Consensus 248 ~~~l~~~g~~v~~ 260 (340)
T TIGR00692 248 LQAVTPGGRVSLL 260 (340)
T ss_pred HHhhcCCCEEEEE
Confidence 8899999988763
No 363
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=83.65 E-value=9.4 Score=29.95 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=44.5
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..+++......+++++.+++..+.+++ .|...-+.....+..+.+.... ....+|+|+ |+... ....
T Consensus 202 ~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~~d~vl-d~vg~--~~~~ 270 (367)
T cd08263 202 SAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGRGVDVVV-EALGK--PETF 270 (367)
T ss_pred HHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCCCCCEEE-EeCCC--HHHH
Confidence 34445544432337778777776655533 3432111212223333333321 135699998 43211 2356
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.|+++|.++.
T Consensus 271 ~~~~~~l~~~G~~v~ 285 (367)
T cd08263 271 KLALDVVRDGGRAVV 285 (367)
T ss_pred HHHHHHHhcCCEEEE
Confidence 778899999999875
No 364
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=83.59 E-value=8.7 Score=30.21 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=48.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++++.....+++++.+++..+.+++ .|...-+.....+..+.+..+. ...+|+|+--... ..
T Consensus 199 G~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~~~~d~vld~~g~---~~ 266 (365)
T cd08278 199 GLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----GGGVDYALDTTGV---PA 266 (365)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----CCCCcEEEECCCC---cH
Confidence 3344445555544479999999888776654 3432111111123333333331 3469988743321 23
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.+..+.+.++++|.++.
T Consensus 267 ~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 267 VIEQAVDALAPRGTLAL 283 (365)
T ss_pred HHHHHHHHhccCCEEEE
Confidence 56778889999999885
No 365
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=83.47 E-value=9.6 Score=29.45 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=48.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..+++.....+|++++.+++..+.+++ .|.+.-+.....+..+.+..+. ..+.+|+||--.. ...
T Consensus 176 g~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~d~v~d~~g---~~~ 244 (341)
T PRK05396 176 GIMAAAVAKHVGARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGFDVGLEMSG---APS 244 (341)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCCCEEEECCC---CHH
Confidence 3444555555433367777777776655443 3443212222233434443332 2356998874222 244
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+.+.|+++|.++.-
T Consensus 245 ~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 245 AFRQMLDNMNHGGRIAML 262 (341)
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 567778899999998873
No 366
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=83.38 E-value=4.8 Score=32.67 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=47.0
Q ss_pred EeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 20 IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 20 ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
-|++|.......+-+.+.=-.+-+.+++|-..+.-.-+ +.+||.||.-+..+--.-....+.++|-|
T Consensus 140 SEls~n~a~~lakllp~Yld~~~~~VV~Ggv~ETt~LL------~~rfD~IfyTGsp~VgkIim~aAaKhLTP 206 (477)
T KOG2456|consen 140 SELSPNTAKLLAKLLPQYLDQDLIRVVNGGVPETTELL------KQRFDHIFYTGSPRVGKIIMAAAAKHLTP 206 (477)
T ss_pred hhcChhHHHHHHHHHHHhcCcceEEEecCCCchHHHHH------HhhccEEEecCCchHHHHHHHHHHhcCCc
Confidence 47778888888777777622346999999998875544 46899999877655444455566666655
No 367
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=83.12 E-value=1.2 Score=33.87 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=51.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCC---------------------------cE-EEEEccHHHHHHHHhhcCCCCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDH---------------------------KI-NFIESEALSVLDQLLKYSENEG 65 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~---------------------------~i-~~~~~d~~~~l~~~~~~~~~~~ 65 (157)
-.+|++.|..+...+..++-++..+.-+ .| +++.+|..+.-+ +.....-.+
T Consensus 79 f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~p-l~~~~~~p~ 157 (256)
T PF01234_consen 79 FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNP-LDPPVVLPP 157 (256)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSST-TTTS-SS-S
T ss_pred hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCC-CCccccCcc
Confidence 4469999999999988877765532111 01 244444433211 100000013
Q ss_pred ceeEEEEcC-------CCcccHHHHHHHHhcccCCeEEEEecccC
Q 031568 66 SFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 66 ~fD~I~iD~-------~~~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+||.|+.-. +...|...++.+.++|||||.++.-.++-
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 599998632 33457777888889999999999866543
No 368
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=83.09 E-value=17 Score=27.04 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=45.5
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
+|..||-++...+....+++..|.. + ....+..+.+..+. .. ||+|++|...+. -.+..+.+...
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~--v-~~~~~~~~a~~~~~-----~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYE--V-DVAADGEEALEAAR-----EQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHh-----cC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 6889999999999999999999873 3 34455566655542 45 999999986543 23344554433
No 369
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.81 E-value=11 Score=30.82 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=47.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++..++.. +++|+.+|.+|...+.|++ .|.. .+ +..+.+ ...|+||.-.. ...
T Consensus 214 G~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~----~G~~----~~--~~~e~v----------~~aDVVI~atG---~~~ 269 (413)
T cd00401 214 GKGCAQSLRGQ-GARVIVTEVDPICALQAAM----EGYE----VM--TMEEAV----------KEGDIFVTTTG---NKD 269 (413)
T ss_pred HHHHHHHHHHC-CCEEEEEECChhhHHHHHh----cCCE----Ec--cHHHHH----------cCCCEEEECCC---CHH
Confidence 55555566554 6689999999998877765 3431 11 122221 24798886543 344
Q ss_pred HHHHH-HhcccCCeEEEEe
Q 031568 82 YHERL-MKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~-~~~L~~gG~iv~~ 99 (157)
.+... .+.+++||+++.-
T Consensus 270 ~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 270 IITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred HHHHHHHhcCCCCcEEEEe
Confidence 56654 7899999999753
No 370
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=82.18 E-value=14 Score=28.15 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=46.2
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..++++ .+.++++++.+++..+.+++. .|...-+.....+..+.+.... .+.+|.++ |+.. ...+
T Consensus 161 ~~~~~a~~-~G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~~~~d~vi-~~~g---~~~~ 227 (329)
T cd05288 161 VVGQIAKL-LGARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----PDGIDVYF-DNVG---GEIL 227 (329)
T ss_pred HHHHHHHH-cCCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----cCCceEEE-Ecch---HHHH
Confidence 34444444 467888888888776665442 3432112222223333333321 24699887 4321 2357
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.++++|.++.
T Consensus 228 ~~~~~~l~~~G~~v~ 242 (329)
T cd05288 228 DAALTLLNKGGRIAL 242 (329)
T ss_pred HHHHHhcCCCceEEE
Confidence 777889999999874
No 371
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=82.18 E-value=12 Score=28.84 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=46.3
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.++.+++.....+|++++.+++..+.++ +.|.. .+--...+..+.+..+. ....+|+|+--.. -....
T Consensus 182 ~~~~~a~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~~----~~~~~dvvld~~g---~~~~~ 249 (340)
T cd05284 182 IAVQILRALTPATVIAVDRSEEALKLAE----RLGAD-HVLNASDDVVEEVRELT----GGRGADAVIDFVG---SDETL 249 (340)
T ss_pred HHHHHHHHhCCCcEEEEeCCHHHHHHHH----HhCCc-EEEcCCccHHHHHHHHh----CCCCCCEEEEcCC---CHHHH
Confidence 3444555443378888888877666553 34542 22111112223333332 1346998884332 13457
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.|+++|.++.
T Consensus 250 ~~~~~~l~~~g~~i~ 264 (340)
T cd05284 250 ALAAKLLAKGGRYVI 264 (340)
T ss_pred HHHHHHhhcCCEEEE
Confidence 778899999999885
No 372
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.06 E-value=12 Score=29.42 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=44.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+|+.. +.++++++.+++....+ +++.|.. . ++. .+. +.+... .+.+|+|| |+. ...
T Consensus 196 G~~avq~Ak~~-Ga~vi~~~~~~~~~~~~---~~~~Ga~-~--vi~~~~~-~~~~~~------~~~~D~vi-d~~--g~~ 258 (360)
T PLN02586 196 GHVAVKIGKAF-GLKVTVISSSSNKEDEA---INRLGAD-S--FLVSTDP-EKMKAA------IGTMDYII-DTV--SAV 258 (360)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCcchhhhH---HHhCCCc-E--EEcCCCH-HHHHhh------cCCCCEEE-ECC--CCH
Confidence 44444455543 66788888776543222 2234542 1 121 121 222322 23589888 432 123
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 259 ~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 259 HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred HHHHHHHHHhcCCcEEEEe
Confidence 4677788999999999863
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.72 E-value=9.8 Score=30.42 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=45.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..++..+... +.+|+.+|.+++..+.+.+.+ +. .+.....+..+ +.+. -..+|+|+.... .+.
T Consensus 179 G~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~------l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 179 GTNAAKMANGL-GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA------VKRADLLIGAVLIPGAKA 245 (370)
T ss_pred HHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH------HccCCEEEEccccCCCCC
Confidence 34444445444 568999999988766554432 21 22222233322 3322 136899997642 111
Q ss_pred cHHHHHHHHhcccCCeEEEE
Q 031568 79 YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~ 98 (157)
..-+-+...+.++++++++-
T Consensus 246 p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEE
Confidence 11122555677899988764
No 374
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.51 E-value=8.5 Score=29.68 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=38.2
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCCe
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 94 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG 94 (157)
.+|+.+|.+++..+.+++ .|... . ...+..+. -...|+|++-.+......+++.+...+++++
T Consensus 32 ~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~aDvViiavp~~~~~~v~~~l~~~l~~~~ 94 (307)
T PRK07502 32 GEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGADLVILCVPVGASGAVAAEIAPHLKPGA 94 (307)
T ss_pred cEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCCCEEEECCCHHHHHHHHHHHHhhCCCCC
Confidence 489999999987766643 34321 1 12222222 1347888877654444555666666677776
Q ss_pred EEE
Q 031568 95 IAV 97 (157)
Q Consensus 95 ~iv 97 (157)
+++
T Consensus 95 iv~ 97 (307)
T PRK07502 95 IVT 97 (307)
T ss_pred EEE
Confidence 553
No 375
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.40 E-value=6.6 Score=30.73 Aligned_cols=75 Identities=11% Similarity=0.227 Sum_probs=57.0
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcCC----CcccHHHHHHHHhccc
Q 031568 17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDAD----KDNYCNYHERLMKLLK 91 (157)
Q Consensus 17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~~----~~~~~~~~~~~~~~L~ 91 (157)
-.-++.++..++.+++|++ ||.++++|..|.+..- +.+..|.++ +|+. .......+.++.+-+.
T Consensus 289 ~lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k-----~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~ 357 (414)
T COG5379 289 ALPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGK-----PAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAE 357 (414)
T ss_pred CCChhhchhhHHHHHhhhh------heeeecccHHHHhccC-----CCCCcceEEEecchhhcccchHHHHHHHHhhccC
Confidence 3567788999999999885 5899999999998632 246788775 4552 1235667888889999
Q ss_pred CCeEEEEeccc
Q 031568 92 VGGIAVYDNTL 102 (157)
Q Consensus 92 ~gG~iv~~~~~ 102 (157)
+|..+|+....
T Consensus 358 ~gA~VifRtaa 368 (414)
T COG5379 358 AGARVIFRTAA 368 (414)
T ss_pred CCcEEEEeccc
Confidence 99999987553
No 376
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=81.30 E-value=14 Score=28.85 Aligned_cols=85 Identities=18% Similarity=0.134 Sum_probs=48.3
Q ss_pred cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH---HHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~---~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..+|+.. +. +|++++.+++..+.++ +.|...-+.....+.. +.+..+. ....+|+||--..
T Consensus 190 G~~~~~lak~~-G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g-- 258 (361)
T cd08231 190 GLYAVAAAKLA-GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----GGRGADVVIEASG-- 258 (361)
T ss_pred HHHHHHHHHHc-CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----CCCCCcEEEECCC--
Confidence 34445555554 45 8999998888776654 3454321222111111 1222221 1346998874332
Q ss_pred ccHHHHHHHHhcccCCeEEEE
Q 031568 78 NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~ 98 (157)
....+..+.+.++++|.++.
T Consensus 259 -~~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 259 -HPAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred -ChHHHHHHHHHhccCCEEEE
Confidence 13456778899999999985
No 377
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=81.18 E-value=17 Score=27.58 Aligned_cols=83 Identities=11% Similarity=0.055 Sum_probs=46.2
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
..+..++++ .+.+++.+..+++..+.+++ .|...-+.....+ ..+.+..+. ....+|+++- +.. ..
T Consensus 155 ~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~-~~~---~~ 221 (334)
T PTZ00354 155 TAAAQLAEK-YGAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----GEKGVNLVLD-CVG---GS 221 (334)
T ss_pred HHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----CCCCceEEEE-CCc---hH
Confidence 334444444 36666677777777666643 4542112111222 333333332 2346999984 321 34
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.+..+.+.|+++|.++.
T Consensus 222 ~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 222 YLSETAEVLAVDGKWIV 238 (334)
T ss_pred HHHHHHHHhccCCeEEE
Confidence 66778889999999885
No 378
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.17 E-value=13 Score=28.81 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=45.3
Q ss_pred cHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH---HHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 4 PTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 4 st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.++.+|+.. +.+ |+.++.+++..+.+++ .|.+.-+.....+. .+.+.... ....+|+|+-....
T Consensus 177 ~a~~lak~~-G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~----~~~~~d~vld~~g~--- 244 (343)
T cd05285 177 LTAAVAKAF-GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL----GGKGPDVVIECTGA--- 244 (343)
T ss_pred HHHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh----CCCCCCEEEECCCC---
Confidence 344455553 444 8888888777766644 24332122222221 22222221 13459988854331
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~ 98 (157)
...+....+.|+++|.++.
T Consensus 245 ~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 245 ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred HHHHHHHHHHhhcCCEEEE
Confidence 2356777889999999885
No 379
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=81.13 E-value=14 Score=28.13 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++.+ -+.+++.++.+++..+.+++ .|...-+.... .+..+.+..+. ....+|+++-... .
T Consensus 173 g~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~~~~----~ 239 (336)
T cd08276 173 SLFALQFAKA-AGARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----GGRGVDHVVEVGG----P 239 (336)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----CCCCCcEEEECCC----h
Confidence 3344444444 46788998888887776654 24332122222 33444444432 2346999984322 2
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.....+.+.|+++|.++.
T Consensus 240 ~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 240 GTLAQSIKAVAPGGVISL 257 (336)
T ss_pred HHHHHHHHhhcCCCEEEE
Confidence 356677889999999875
No 380
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.04 E-value=7.7 Score=24.05 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=45.9
Q ss_pred CcEEE-EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 14 ILQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 14 ~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
..+|+ ..+.+++..+...+ +.+ +.+...+..+.++ .-|+||+-..+....+.++.+ ..+.+
T Consensus 25 ~~~v~~~~~r~~~~~~~~~~---~~~----~~~~~~~~~~~~~----------~advvilav~p~~~~~v~~~i-~~~~~ 86 (96)
T PF03807_consen 25 PHEVIIVSSRSPEKAAELAK---EYG----VQATADDNEEAAQ----------EADVVILAVKPQQLPEVLSEI-PHLLK 86 (96)
T ss_dssp GGEEEEEEESSHHHHHHHHH---HCT----TEEESEEHHHHHH----------HTSEEEE-S-GGGHHHHHHHH-HHHHT
T ss_pred ceeEEeeccCcHHHHHHHHH---hhc----cccccCChHHhhc----------cCCEEEEEECHHHHHHHHHHH-hhccC
Confidence 37888 44999988776654 333 4455556766654 479999988777888888888 66777
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
+.+++.
T Consensus 87 ~~~vis 92 (96)
T PF03807_consen 87 GKLVIS 92 (96)
T ss_dssp TSEEEE
T ss_pred CCEEEE
Confidence 777764
No 381
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.89 E-value=15 Score=28.36 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=44.4
Q ss_pred cHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 4 PTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 4 st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
.++.+++.. +. ++++++.+++....+++ .|...-+.....+.. .+.++. ..+.+|+||-... ....
T Consensus 178 ~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~vd~vld~~g---~~~~ 244 (341)
T cd05281 178 MAIAVAKAA-GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTGVDVVLEMSG---NPKA 244 (341)
T ss_pred HHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCCCCEEEECCC---CHHH
Confidence 344455544 44 67777766666655543 343211222222333 233332 2356999985432 2345
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
...+.+.|+++|.++.
T Consensus 245 ~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 245 IEQGLKALTPGGRVSI 260 (341)
T ss_pred HHHHHHHhccCCEEEE
Confidence 6777889999999875
No 382
>PRK05967 cystathionine beta-lyase; Provisional
Probab=80.64 E-value=27 Score=28.29 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=53.6
Q ss_pred cHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccH
Q 031568 4 PTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYC 80 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~ 80 (157)
++++++...|+.+|+..+.. ......+++.++..|. +++++..+..+.+.+.. .+.-.+|++..+.. ...
T Consensus 93 ~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e~l~~al-----~~~TklV~lesPsNP~l~v 165 (395)
T PRK05967 93 TVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGAGIAKLM-----RPNTKVVHTEAPGSNTFEM 165 (395)
T ss_pred HHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHHHHHHhc-----CcCceEEEEECCCCCCCcH
Confidence 33444445588888887754 3344455566777776 46666544334444432 34578999885321 223
Q ss_pred HHHHHHHhcccC-CeEEEEecccC
Q 031568 81 NYHERLMKLLKV-GGIAVYDNTLW 103 (157)
Q Consensus 81 ~~~~~~~~~L~~-gG~iv~~~~~~ 103 (157)
..++.+.++.+. |.++++|++..
T Consensus 166 ~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 166 QDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHHHHHHHHHHhCCEEEEECCcc
Confidence 345566665554 56677788753
No 383
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.63 E-value=16 Score=28.09 Aligned_cols=82 Identities=24% Similarity=0.350 Sum_probs=47.3
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
++.++.+ -+.+++.+..+++..+.++ ..|.+.-+.....+..+.+.... ..+.+|+++-+... ...+.
T Consensus 182 ~~~~a~~-~g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~~~~vd~vl~~~~~---~~~~~ 249 (341)
T cd08297 182 GVQYAKA-MGLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----GGGGAHAVVVTAVS---AAAYE 249 (341)
T ss_pred HHHHHHH-CCCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----cCCCCCEEEEcCCc---hHHHH
Confidence 3334444 3678999988887766553 34432112222223333343332 13569999864432 34567
Q ss_pred HHHhcccCCeEEEE
Q 031568 85 RLMKLLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~~L~~gG~iv~ 98 (157)
.+.+.++++|.++.
T Consensus 250 ~~~~~l~~~g~~v~ 263 (341)
T cd08297 250 QALDYLRPGGTLVC 263 (341)
T ss_pred HHHHHhhcCCEEEE
Confidence 77888999999985
No 384
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=80.62 E-value=14 Score=28.63 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568 7 LFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 85 (157)
Q Consensus 7 ~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~ 85 (157)
.+|+.. +. +|++++.+++..+.+++ .|...-+.....+..+.+.... .+.+|+++ |... -...++.
T Consensus 193 ~~a~~~-G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi-d~~g--~~~~~~~ 259 (350)
T cd08240 193 ALLKAL-GPANIIVVDIDEAKLEAAKA----AGADVVVNGSDPDAAKRIIKAA-----GGGVDAVI-DFVN--NSATASL 259 (350)
T ss_pred HHHHHc-CCCeEEEEeCCHHHHHHHHH----hCCcEEecCCCccHHHHHHHHh-----CCCCcEEE-ECCC--CHHHHHH
Confidence 344443 44 78888888777666533 3442111111122223333332 22699988 4321 1345778
Q ss_pred HHhcccCCeEEEE
Q 031568 86 LMKLLKVGGIAVY 98 (157)
Q Consensus 86 ~~~~L~~gG~iv~ 98 (157)
+.+.|+++|.++.
T Consensus 260 ~~~~l~~~g~~v~ 272 (350)
T cd08240 260 AFDILAKGGKLVL 272 (350)
T ss_pred HHHHhhcCCeEEE
Confidence 8899999999885
No 385
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.57 E-value=2.2 Score=34.06 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=54.7
Q ss_pred cccHHHHHh--hCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc-----
Q 031568 2 HLPTKLFMT--GNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD----- 73 (157)
Q Consensus 2 g~st~~l~~--~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD----- 73 (157)
|=.|.++|. .+|.. .++.+|-+|..-++.-.-.+.... .+.....+|..+-.-.+. ....|+++++-
T Consensus 123 GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~ytl~i~~~eLl~ 197 (484)
T COG5459 123 GPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADLYTLAIVLDELLP 197 (484)
T ss_pred CCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccceeehhhhhhhhcc
Confidence 345666776 45654 578888888766555443333222 233344444443322221 24578988753
Q ss_pred -CCCcccHHHHHHHHhcccCCeEEEEe
Q 031568 74 -ADKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 74 -~~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
........+++..+.+++|||.+|+-
T Consensus 198 d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 198 DGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred ccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 22223455788889999999999874
No 386
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=80.57 E-value=12 Score=28.74 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=44.1
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+|+...+.+|+++..+++..+.+++ .|.+.-+.. ..+..+.+... ..+.+|+|+ |.. ........+.
T Consensus 168 ~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~~i~~~-----~~~~vd~vl-~~~--~~~~~~~~~~ 234 (336)
T TIGR02817 168 LARQLTGLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKAQLEKL-----GLEAVSYVF-SLT--HTDQHFKEIV 234 (336)
T ss_pred HHHHhCCCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHHHHHHh-----cCCCCCEEE-EcC--CcHHHHHHHH
Confidence 3433236788888877776655533 454311211 12333434333 134699888 432 1134567778
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
+.|+++|.++.
T Consensus 235 ~~l~~~G~~v~ 245 (336)
T TIGR02817 235 ELLAPQGRFAL 245 (336)
T ss_pred HHhccCCEEEE
Confidence 89999999875
No 387
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=80.50 E-value=23 Score=26.87 Aligned_cols=100 Identities=8% Similarity=-0.003 Sum_probs=57.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCC-hhHHHHHHHHHHHcCC--CCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC--
Q 031568 2 HLPTKLFMTGNKILQITAIDVN-RETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD-- 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~-~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~-- 75 (157)
|+-|..+-..++. .+..+|+| |+.++.=++.+.+.+. .++.+++..|..+ +...+.+..-..+..-+++..+-
T Consensus 91 GlDTr~~Rl~~~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~ 169 (260)
T TIGR00027 91 GLDTRAYRLPWPD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLM 169 (260)
T ss_pred ccccHHHhcCCCC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhh
Confidence 6666655444443 35556665 6677777777776553 3578889899863 33333210000112334444432
Q ss_pred ---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 76 ---KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 76 ---~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
......+++.+.++..||+.|++|-+.
T Consensus 170 YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 170 YLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 223456777777777799999998653
No 388
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.28 E-value=8.6 Score=29.26 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+|+++|.+++..+.+++ .|. +.....+. +. -...|+||+-.+.....+.++.+.+.+++
T Consensus 22 ~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~~----------~~~aDlVilavp~~~~~~~~~~l~~~l~~ 83 (279)
T PRK07417 22 LGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-SL----------LKDCDLVILALPIGLLLPPSEQLIPALPP 83 (279)
T ss_pred CCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-hH----------hcCCCEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 36789999999988776654 232 11111121 11 13478888876655555666666667766
Q ss_pred CeEE
Q 031568 93 GGIA 96 (157)
Q Consensus 93 gG~i 96 (157)
+.++
T Consensus 84 ~~ii 87 (279)
T PRK07417 84 EAIV 87 (279)
T ss_pred CcEE
Confidence 6444
No 389
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.26 E-value=2.1 Score=32.64 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=35.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
-..+.++|+++.+++..+.|+... ++.+|+.+....-. ...+|+++.+++
T Consensus 22 ~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~~gpP 71 (275)
T cd00315 22 FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLTGGFP 71 (275)
T ss_pred CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEEeCCC
Confidence 345789999999999999887422 56777776644210 246999998764
No 390
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=79.90 E-value=20 Score=27.15 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=47.0
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
..+..+|++ .+.++++++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+|+--... . .
T Consensus 157 ~~~~~la~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~~~g~---~-~ 223 (324)
T cd08244 157 SLLVQLAKA-AGATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREAL----GGGGVTVVLDGVGG---A-I 223 (324)
T ss_pred HHHHHHHHH-CCCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHc----CCCCceEEEECCCh---H-h
Confidence 334445554 36789999888887666533 4543212222223333333331 13469999843221 2 3
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
.+.+.+.|+++|.++.
T Consensus 224 ~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 224 GRAALALLAPGGRFLT 239 (324)
T ss_pred HHHHHHHhccCcEEEE
Confidence 4677888999999885
No 391
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=79.86 E-value=16 Score=28.07 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=47.1
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+|+. .+.+++++..+++..+.+++ .+...-+.....+..+.+..+. ....+|+++-... -...+..+.
T Consensus 178 lA~~-~g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~~vd~vld~~g---~~~~~~~~~ 245 (337)
T cd08261 178 VAKA-RGARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----DGEGADVVIDATG---NPASMEEAV 245 (337)
T ss_pred HHHH-cCCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----CCCCCCEEEECCC---CHHHHHHHH
Confidence 4444 47888888888877766643 3332223333334444444332 2346999985432 134567778
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
+.|+++|.++.
T Consensus 246 ~~l~~~G~~i~ 256 (337)
T cd08261 246 ELVAHGGRVVL 256 (337)
T ss_pred HHHhcCCEEEE
Confidence 89999999875
No 392
>PRK13435 response regulator; Provisional
Probab=79.74 E-value=14 Score=24.52 Aligned_cols=55 Identities=15% Similarity=0.058 Sum_probs=39.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
.-+|..+|-++......+..++..|. ++.....+..+.+.... ...+|+|++|..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~-----~~~~dliivd~~ 59 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGH--EVVGIAMSSEQAIALGR-----RRQPDVALVDVH 59 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCC--eEEEeeCCHHHHHHHhh-----hcCCCEEEEeee
Confidence 46789999999999999888877664 33334566666655442 356999999964
No 393
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.56 E-value=9.8 Score=29.02 Aligned_cols=87 Identities=11% Similarity=0.081 Sum_probs=48.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---C-----CC--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---G-----VD--------HKINFIESEALSVLDQLLKYSENE 64 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---~-----~~--------~~i~~~~~d~~~~l~~~~~~~~~~ 64 (157)
||.+.+..++. .+-+|+.+|.+++.++.+++.+... + +. .+++. ..+..+.+
T Consensus 12 mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~---------- 79 (288)
T PRK09260 12 MGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV---------- 79 (288)
T ss_pred HHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh----------
Confidence 34443333333 3678999999999999887654321 1 10 11222 22332221
Q ss_pred CceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEEe
Q 031568 65 GSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 65 ~~fD~I~iD~~~~~--~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..-|+|+.-..... -..++..+.+.++++.+++.+
T Consensus 80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 34789886543221 235566777788888776554
No 394
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=79.51 E-value=17 Score=28.05 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
+..++++ -+.+|+++..+++..+.++ +.|...-+.... .+..+.+..+. .+.+|++|--... ...+
T Consensus 181 ~~~~a~~-~G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~-----~~~~d~vi~~~g~---~~~~ 247 (345)
T cd08260 181 AVMIASA-LGARVIAVDIDDDKLELAR----ELGAVATVNASEVEDVAAAVRDLT-----GGGAHVSVDALGI---PETC 247 (345)
T ss_pred HHHHHHH-cCCeEEEEeCCHHHHHHHH----HhCCCEEEccccchhHHHHHHHHh-----CCCCCEEEEcCCC---HHHH
Confidence 3334444 3678888888877766663 335432122222 23333333332 2379988843221 3456
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.|+++|.++.
T Consensus 248 ~~~~~~l~~~g~~i~ 262 (345)
T cd08260 248 RNSVASLRKRGRHVQ 262 (345)
T ss_pred HHHHHHhhcCCEEEE
Confidence 677889999998875
No 395
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=79.17 E-value=21 Score=27.58 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
-+.++++.-...+..++|++| |.+.-|.....|..+....+. +....|.++=.-. .+.|...+..||+
T Consensus 170 ~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiT----ngKGVd~vyDsvG----~dt~~~sl~~Lk~ 237 (336)
T KOG1197|consen 170 VGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKIT----NGKGVDAVYDSVG----KDTFAKSLAALKP 237 (336)
T ss_pred cCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhcc----CCCCceeeecccc----chhhHHHHHHhcc
Confidence 588888888888888877764 555567788888877766552 2456998873222 3457777889999
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
+|.+|.
T Consensus 238 ~G~mVS 243 (336)
T KOG1197|consen 238 MGKMVS 243 (336)
T ss_pred CceEEE
Confidence 999986
No 396
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=78.80 E-value=16 Score=30.25 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=17.1
Q ss_pred CCcEEEEEeCChhHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPI 33 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~ 33 (157)
.+-+|+..|.+++.++...+.
T Consensus 23 ~G~~V~v~dr~~~~~~~l~~~ 43 (470)
T PTZ00142 23 RGFKISVYNRTYEKTEEFVKK 43 (470)
T ss_pred CCCeEEEEeCCHHHHHHHHHh
Confidence 466999999999998877654
No 397
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=78.75 E-value=6.7 Score=34.66 Aligned_cols=60 Identities=22% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.+-+|.-+|-++-....|+.++.+.|.. +.... |..+.+..+. +...||+||+|...+.+
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~--~~~~~-sg~e~l~~~~----~~~~y~~ifmD~qMP~m 724 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAE--VTEVN-SGQEALDKLK----PPHSYDVIFMDLQMPEM 724 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCe--eEeec-CcHHHHHhcC----CCCcccEEEEEcCCccc
Confidence 4778999999999999999999999874 33333 8788777664 35789999999865543
No 398
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=78.67 E-value=18 Score=27.94 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=47.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++++. +.+++.++.+++..+.+++ .|...-+.....+..+.+..+ ..+|+++ |+. ....
T Consensus 176 G~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------~~~d~vi-~~~--g~~~ 240 (333)
T cd08296 176 GHLAVQYAAKM-GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------GGAKLIL-ATA--PNAK 240 (333)
T ss_pred HHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------CCCCEEE-ECC--CchH
Confidence 33344455543 6689999998887776643 454221222222333333321 3589888 331 1244
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.++.+.+.|+++|.++.
T Consensus 241 ~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 241 AISALVGGLAPRGKLLI 257 (333)
T ss_pred HHHHHHHHcccCCEEEE
Confidence 67778899999999885
No 399
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.38 E-value=16 Score=27.87 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=48.4
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc----------CC-C--------CcEEEEEccHHHHHHHHhhcC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA----------GV-D--------HKINFIESEALSVLDQLLKYS 61 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~----------~~-~--------~~i~~~~~d~~~~l~~~~~~~ 61 (157)
||.+.+..++. .+.+|+.+|.+++.++.+++.+.+. +. . +++... .|. +. +
T Consensus 14 mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~---~---- 83 (291)
T PRK06035 14 MGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-ES---L---- 83 (291)
T ss_pred HHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-HH---h----
Confidence 44444443333 3679999999999998876654431 11 0 112111 122 11 1
Q ss_pred CCCCceeEEEEcCCCcc--cHHHHHHHHhcccCCeEEEE
Q 031568 62 ENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 62 ~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~gG~iv~ 98 (157)
...|+|+.-..... ...+++.+.+.++++.+++.
T Consensus 84 ---~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 84 ---SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred ---CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 34798887653321 35667777778888877654
No 400
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.26 E-value=17 Score=25.03 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=50.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcC------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
.+-+|+....+++.++..+++-.... +..++.+ ..|..+.++ .-|+|++--+.....++++.+
T Consensus 21 ~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~----------~ad~IiiavPs~~~~~~~~~l 89 (157)
T PF01210_consen 21 NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE----------DADIIIIAVPSQAHREVLEQL 89 (157)
T ss_dssp CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT----------T-SEEEE-S-GGGHHHHHHHH
T ss_pred cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC----------cccEEEecccHHHHHHHHHHH
Confidence 46799999999988887776543211 1234543 566666542 479999987777788899999
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.++++++-.++.
T Consensus 90 ~~~l~~~~~ii~ 101 (157)
T PF01210_consen 90 APYLKKGQIIIS 101 (157)
T ss_dssp TTTSHTT-EEEE
T ss_pred hhccCCCCEEEE
Confidence 999988888776
No 401
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=78.10 E-value=21 Score=26.63 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=44.1
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..++.. -+.++++++.+++..+.+++ .|...-+.....+..+.+..+. ....+|+++--.. . ...
T Consensus 152 ~~~~~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl~~~~-~---~~~ 218 (320)
T cd05286 152 LLTQWAKA-LGATVIGTVSSEEKAELARA----AGADHVINYRDEDFVERVREIT----GGRGVDVVYDGVG-K---DTF 218 (320)
T ss_pred HHHHHHHH-cCCEEEEEcCCHHHHHHHHH----CCCCEEEeCCchhHHHHHHHHc----CCCCeeEEEECCC-c---HhH
Confidence 33334444 36778888877776655533 4542111111112333333321 1346999984322 1 346
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.++++|.++.
T Consensus 219 ~~~~~~l~~~g~~v~ 233 (320)
T cd05286 219 EGSLDSLRPRGTLVS 233 (320)
T ss_pred HHHHHhhccCcEEEE
Confidence 677889999999874
No 402
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.53 E-value=23 Score=27.23 Aligned_cols=75 Identities=24% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHc-CC----------CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKA-GV----------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~-~~----------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~ 79 (157)
.+.+|+.+|.+++.++.+++.+.+. +. ..++++ ..|..+.+ ...|+|+.-.... ..
T Consensus 26 ~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----------~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 26 KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV----------SGADLVIEAVPEKLELK 94 (311)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----------ccCCEEEEeccCcHHHH
Confidence 4678999999999988887754321 11 011222 22332221 3579998765432 13
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~ 98 (157)
..++..+...++++.+++.
T Consensus 95 ~~v~~~l~~~~~~~~ii~s 113 (311)
T PRK06130 95 RDVFARLDGLCDPDTIFAT 113 (311)
T ss_pred HHHHHHHHHhCCCCcEEEE
Confidence 4567776666776666544
No 403
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.43 E-value=14 Score=28.43 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
+..+++.. +. ++++++.+++..+.+++ .|.+ . ++..+-.. +..+.. ..+.+|+++--.. ....+
T Consensus 181 ~~~lak~~-G~~~v~~~~~s~~~~~~~~~----~g~~-~--vi~~~~~~-~~~~~~---~~~~vd~vld~~g---~~~~~ 245 (339)
T cd08232 181 VVAAARRA-GAAEIVATDLADAPLAVARA----MGAD-E--TVNLARDP-LAAYAA---DKGDFDVVFEASG---APAAL 245 (339)
T ss_pred HHHHHHHc-CCcEEEEECCCHHHHHHHHH----cCCC-E--EEcCCchh-hhhhhc---cCCCccEEEECCC---CHHHH
Confidence 33344443 44 78888887777665543 2332 1 22111111 111110 1245999885432 13456
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.|+++|.++.
T Consensus 246 ~~~~~~L~~~G~~v~ 260 (339)
T cd08232 246 ASALRVVRPGGTVVQ 260 (339)
T ss_pred HHHHHHHhcCCEEEE
Confidence 778899999999885
No 404
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=77.30 E-value=18 Score=25.09 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=37.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+|..||.|+..-...+. .. + .. ......+.+..+. .+.||+|++|.+.......+ .+.....-
T Consensus 27 ~g~~vllvD~D~q~~~~~~~-~~--~--~~---~~~~l~~~~~~~~-----~~~yD~VIiD~pp~~~~~~~-~~~~~~~a 92 (169)
T cd02037 27 LGYKVGLLDADIYGPSIPKM-WR--G--PM---KMGAIKQFLTDVD-----WGELDYLVIDMPPGTGDEHL-TLAQSLPI 92 (169)
T ss_pred cCCcEEEEeCCCCCCCchHH-Hh--C--cc---hHHHHHHHHHHhh-----cCCCCEEEEeCCCCCcHHHH-HHHhccCC
Confidence 58899999999876432211 10 0 00 1112223333321 25799999998765322222 22222344
Q ss_pred CeEEEEe
Q 031568 93 GGIAVYD 99 (157)
Q Consensus 93 gG~iv~~ 99 (157)
.+++++-
T Consensus 93 d~viiV~ 99 (169)
T cd02037 93 DGAVIVT 99 (169)
T ss_pred CeEEEEE
Confidence 6666653
No 405
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=76.85 E-value=39 Score=27.56 Aligned_cols=88 Identities=22% Similarity=0.207 Sum_probs=53.5
Q ss_pred hCCCcEEEEEe-CChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH--HHHHHHH
Q 031568 11 GNKILQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC--NYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve-~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~--~~~~~~~ 87 (157)
..++.++++.+ ..-....+.++...+.|.. +.++..+-.+-+...- .+.-++||+..+...+. ..++.+.
T Consensus 113 ~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~~~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~ 185 (409)
T KOG0053|consen 113 LPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLKKILKAI-----KENTKAVFLESPSNPLLKVPDIEKLA 185 (409)
T ss_pred cCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHHHHHHhh-----ccCceEEEEECCCCCccccccHHHHH
Confidence 33577777775 5677888899988888874 5666655555444432 34599999976422111 1123333
Q ss_pred hcc-cCCeEEEEecccCCc
Q 031568 88 KLL-KVGGIAVYDNTLWGG 105 (157)
Q Consensus 88 ~~L-~~gG~iv~~~~~~~~ 105 (157)
++. ++|-.+|+||.+...
T Consensus 186 ~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 186 RLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHhhCCCEEEEeCCcCcc
Confidence 333 556667778876544
No 406
>PRK10083 putative oxidoreductase; Provisional
Probab=76.84 E-value=18 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=44.0
Q ss_pred cHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 4 PTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 4 st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
.++.++++ .+...+++++.+++..+.+++ .|.+.-+.....+..+.+.. ....+|+|| |+.. ....
T Consensus 175 ~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~------~g~~~d~vi-d~~g--~~~~ 241 (339)
T PRK10083 175 TIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE------KGIKPTLII-DAAC--HPSI 241 (339)
T ss_pred HHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc------CCCCCCEEE-ECCC--CHHH
Confidence 33444443 344468888888887776654 34421122222233333321 122355555 4321 1345
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
+..+.+.|+++|.++.
T Consensus 242 ~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 242 LEEAVTLASPAARIVL 257 (339)
T ss_pred HHHHHHHhhcCCEEEE
Confidence 7778899999999986
No 407
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=76.79 E-value=7.8 Score=29.27 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=26.9
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 65 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 65 ~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
..+|+||+-.......+.++.+.+++.+++.|+.
T Consensus 58 ~~~D~iiv~vKs~~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 58 PPADLVIITVKAYQTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred CCCCEEEEeccchhHHHHHHHhHhhcCCCCEEEE
Confidence 4799999987555567778888888998887775
No 408
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.38 E-value=5.1 Score=30.26 Aligned_cols=61 Identities=8% Similarity=0.270 Sum_probs=44.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
+-+.++.|+|+..++.|+.++..+ +++..|++... |-..+++..- +..+.||+.+++++..
T Consensus 102 gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gii---g~nE~yd~tlCNPPFh 164 (292)
T COG3129 102 GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGII---GKNERYDATLCNPPFH 164 (292)
T ss_pred cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccc---cccceeeeEecCCCcc
Confidence 567889999999999999999987 77767887643 3333444332 1246899999998643
No 409
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=75.99 E-value=33 Score=28.01 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=22.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGL 31 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~ 31 (157)
||+.++...+. +-+|+++|++++.++..+
T Consensus 17 vGlpmA~~la~--~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 17 VGLPLAVEFGK--SRQVVGFDVNKKRILELK 45 (425)
T ss_pred chHHHHHHHhc--CCEEEEEeCCHHHHHHHH
Confidence 67777665443 489999999999988776
No 410
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.95 E-value=31 Score=25.91 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..+++. .+.+|+++..+++..+.++ ..|.. .+-....+..+.+..+ ...+|+++ |... ...+
T Consensus 158 ~~~~~a~~-~g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~~~~d~vl-~~~~---~~~~ 221 (320)
T cd08243 158 AALKLAKA-LGATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------PGGFDKVL-ELVG---TATL 221 (320)
T ss_pred HHHHHHHH-cCCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------CCCceEEE-ECCC---hHHH
Confidence 33334444 4678888888887655553 34542 2211122333333332 24699998 4322 2357
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.|+++|.++.
T Consensus 222 ~~~~~~l~~~g~~v~ 236 (320)
T cd08243 222 KDSLRHLRPGGIVCM 236 (320)
T ss_pred HHHHHHhccCCEEEE
Confidence 778899999999875
No 411
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=75.94 E-value=30 Score=25.83 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=46.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++.++.. .+.+|+.++.+++..+.+++ .|...-+.....+..+.+.... ..+.+|+++-.... .
T Consensus 158 g~~~~~~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~~~----~ 224 (325)
T cd08253 158 GHAAVQLARW-AGARVIATASSAEGAELVRQ----AGADAVFNYRAEDLADRILAAT----AGQGVDVIIEVLAN----V 224 (325)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHHc----CCCceEEEEECCch----H
Confidence 3344444444 36788888888877666532 3443222222223333333321 13469999854332 2
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
..+...+.++++|.++.
T Consensus 225 ~~~~~~~~l~~~g~~v~ 241 (325)
T cd08253 225 NLAKDLDVLAPGGRIVV 241 (325)
T ss_pred HHHHHHHhhCCCCEEEE
Confidence 34566688899998874
No 412
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=75.85 E-value=25 Score=26.60 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=40.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+++.++.+++..+.++. .+....+.....+..+.+.... ....+|+++-.... ..++.+.+.+++
T Consensus 190 ~g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~~~g~----~~~~~~~~~l~~ 257 (342)
T cd08266 190 FGATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GKRGVDVVVEHVGA----ATWEKSLKSLAR 257 (342)
T ss_pred cCCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CCCCCcEEEECCcH----HHHHHHHHHhhc
Confidence 36678888887776655533 3332112222222323333221 13469988854432 346677788999
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
+|.++.
T Consensus 258 ~G~~v~ 263 (342)
T cd08266 258 GGRLVT 263 (342)
T ss_pred CCEEEE
Confidence 998875
No 413
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.84 E-value=3.1 Score=29.94 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.1
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.++.++|+|||.+++.
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCeeEEEE
Confidence 34567788999999999874
No 414
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.56 E-value=19 Score=27.98 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=46.2
Q ss_pred CcEEEEEeCChhHHHHHHHH---HHHc-C--CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPI---IKKA-G--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~---~~~~-~--~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+..|+.++.+++.++..+++ .... + +.+++.+. .|..+.+ .+..|+||+-.......+.++.+.
T Consensus 23 g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---------~~~~Dliiiavks~~~~~~l~~l~ 92 (326)
T PRK14620 23 KISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---------SDNATCIILAVPTQQLRTICQQLQ 92 (326)
T ss_pred CCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---------hCCCCEEEEEeCHHHHHHHHHHHH
Confidence 56889999988877766653 2111 1 11233332 3443332 246899999876556777788887
Q ss_pred h-cccCCeEEEE
Q 031568 88 K-LLKVGGIAVY 98 (157)
Q Consensus 88 ~-~L~~gG~iv~ 98 (157)
+ .+.++..++.
T Consensus 93 ~~~l~~~~~vv~ 104 (326)
T PRK14620 93 DCHLKKNTPILI 104 (326)
T ss_pred HhcCCCCCEEEE
Confidence 7 7887765543
No 415
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.49 E-value=24 Score=27.51 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=50.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChh-------HHHHHHHHHHH-------cCC---------CCcEEEEEc-cHHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRE-------TYEIGLPIIKK-------AGV---------DHKINFIES-EALSVLDQ 56 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~-------~~~~a~~~~~~-------~~~---------~~~i~~~~~-d~~~~l~~ 56 (157)
||-+.+.+++. .+.+|+.+|.+++ .++.+++++++ .|. -.++++... |..+.+
T Consensus 1 MG~giA~~~a~-~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~-- 77 (314)
T PRK08269 1 MGQGIALAFAF-AGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADAL-- 77 (314)
T ss_pred CcHHHHHHHHh-CCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHh--
Confidence 67666665554 4899999999995 35556555432 121 123444321 122221
Q ss_pred HhhcCCCCCceeEEEEcCCC--cccHHHHHHHHhcccCCeEEEE
Q 031568 57 LLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 57 ~~~~~~~~~~fD~I~iD~~~--~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
..-|+|+--..- .--..+|..+.+.++|+.++..
T Consensus 78 --------~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaS 113 (314)
T PRK08269 78 --------ADADLVFEAVPEVLDAKREALRWLGRHVDADAIIAS 113 (314)
T ss_pred --------ccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 347888865321 1124577888889999988854
No 416
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.13 E-value=19 Score=27.73 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=36.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+-+|+..|.+++.++.+++ .+.. ...+..+....+ ..-|+||+-.+.......++.+...|++
T Consensus 22 ~g~~V~~~dr~~~~~~~l~~----~g~~-----~~~s~~~~~~~~-------~~~dvIi~~vp~~~~~~v~~~l~~~l~~ 85 (298)
T TIGR00872 22 RGHDCVGYDHDQDAVKAMKE----DRTT-----GVANLRELSQRL-------SAPRVVWVMVPHGIVDAVLEELAPTLEK 85 (298)
T ss_pred CCCEEEEEECCHHHHHHHHH----cCCc-----ccCCHHHHHhhc-------CCCCEEEEEcCchHHHHHHHHHHhhCCC
Confidence 56789999999988766654 2211 012332322211 2356666654433444555555566665
Q ss_pred CeEE
Q 031568 93 GGIA 96 (157)
Q Consensus 93 gG~i 96 (157)
|-++
T Consensus 86 g~iv 89 (298)
T TIGR00872 86 GDIV 89 (298)
T ss_pred CCEE
Confidence 5443
No 417
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.01 E-value=22 Score=27.93 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=50.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH-------cCCC-----CcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK-------AGVD-----HKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~-------~~~~-----~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||-+-+..++. .+.+|+..|.+++..+.+++.++. .+.. .++++. .+..+.+ ..-|
T Consensus 18 MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av----------~~aD 85 (321)
T PRK07066 18 IGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV----------ADAD 85 (321)
T ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh----------cCCC
Confidence 44444444433 589999999999988776664432 2221 233333 2322221 3478
Q ss_pred EEEEcCCCc--ccHHHHHHHHhcccCCeEEEEec
Q 031568 69 YAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 69 ~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+|+-..... --..+|+.+.+.++|+.+|..+.
T Consensus 86 lViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 86 FIQESAPEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred EEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 888654321 12457788888899988665543
No 418
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.96 E-value=35 Score=27.13 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=45.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhH-HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~-~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.+..+|+.. +++|++++.+++. .+.+ +..|.+.-+. ..+. +.+... .+.+|+||--.. ..
T Consensus 191 G~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a----~~lGa~~~i~--~~~~-~~v~~~------~~~~D~vid~~G---~~ 253 (375)
T PLN02178 191 GHIAVKIGKAF-GLRVTVISRSSEKEREAI----DRLGADSFLV--TTDS-QKMKEA------VGTMDFIIDTVS---AE 253 (375)
T ss_pred HHHHHHHHHHc-CCeEEEEeCChHHhHHHH----HhCCCcEEEc--CcCH-HHHHHh------hCCCcEEEECCC---cH
Confidence 44455555554 6688888877543 3333 3456531111 1122 222222 235898874332 23
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+..+.+.++++|.++.-.
T Consensus 254 ~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 254 HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred HHHHHHHHhhcCCCEEEEEc
Confidence 45777889999999998643
No 419
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=74.93 E-value=25 Score=27.30 Aligned_cols=86 Identities=15% Similarity=0.076 Sum_probs=47.5
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
..+..+|++.....+++++.+++..+.+++ .|.+.-+.....+..+.+..+. ....+|+++ |... ....
T Consensus 188 ~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~~~~vdvvl-d~~g--~~~~ 256 (350)
T cd08256 188 LGMIGAARLKNPKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVEKIKELT----GGYGCDIYI-EATG--HPSA 256 (350)
T ss_pred HHHHHHHHHcCCcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CCCCCCEEE-ECCC--ChHH
Confidence 344445555444567888888777655443 4542111111223444444432 134599887 4422 1234
Q ss_pred HHHHHhcccCCeEEEEe
Q 031568 83 HERLMKLLKVGGIAVYD 99 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~ 99 (157)
+..+.+.++++|.++.-
T Consensus 257 ~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 257 VEQGLNMIRKLGRFVEF 273 (350)
T ss_pred HHHHHHHhhcCCEEEEE
Confidence 67788999999998763
No 420
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=74.89 E-value=12 Score=30.99 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=58.3
Q ss_pred cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC------
Q 031568 2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------ 74 (157)
Q Consensus 2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~------ 74 (157)
|.|-+..-. ...--.|+.+|+|+-.++....--.. -.+..++...|..... + ++++||.|+--+
T Consensus 58 GNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~--f-----edESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 58 GNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV--F-----EDESFDIVIDKGTLDALF 128 (482)
T ss_pred CCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc--C-----CCcceeEEEecCcccccc
Confidence 445444444 33456799999999999887663321 1235788888887642 2 267899887422
Q ss_pred ---CC----cccHHHHHHHHhcccCCeEEEEecc
Q 031568 75 ---DK----DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 75 ---~~----~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.. ......+..+.+++++||..+.-..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 11 1123456778899999999776443
No 421
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.51 E-value=32 Score=26.49 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=46.3
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
..+..+|+......+++++.+++..+.+++ .|...-+.....+..+.+..+. +...+|.++--.. -...
T Consensus 182 ~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~~~~~~i~~~~----~~~~~d~il~~~g---~~~~ 250 (345)
T cd08287 182 LCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATDIVAERGEEAVARVRELT----GGVGADAVLECVG---TQES 250 (345)
T ss_pred HHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCceEecCCcccHHHHHHHhc----CCCCCCEEEECCC---CHHH
Confidence 334445555433358888877765554443 4442112222222333333331 2346998883222 1346
Q ss_pred HHHHHhcccCCeEEEEe
Q 031568 83 HERLMKLLKVGGIAVYD 99 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~ 99 (157)
+..+.+.++++|.++.-
T Consensus 251 ~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 251 MEQAIAIARPGGRVGYV 267 (345)
T ss_pred HHHHHHhhccCCEEEEe
Confidence 77888999999998763
No 422
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=74.39 E-value=32 Score=25.50 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 7 LFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 7 ~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
.++++ -+.+++++..+++..+.++ ..|...-+.....+..+.+..+. +...+|+++ |... .......
T Consensus 139 ~~a~~-~g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~i~~~~----~~~~~d~v~-~~~~---~~~~~~~ 205 (303)
T cd08251 139 QLARL-KGAEIYATASSDDKLEYLK----QLGVPHVINYVEEDFEEEIMRLT----GGRGVDVVI-NTLS---GEAIQKG 205 (303)
T ss_pred HHHHH-cCCEEEEEcCCHHHHHHHH----HcCCCEEEeCCCccHHHHHHHHc----CCCCceEEE-ECCc---HHHHHHH
Confidence 34444 3677888888777665553 34553223333334444444332 235699777 5432 2356677
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.++++|.++.
T Consensus 206 ~~~l~~~g~~v~ 217 (303)
T cd08251 206 LNCLAPGGRYVE 217 (303)
T ss_pred HHHhccCcEEEE
Confidence 789999999885
No 423
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=74.18 E-value=12 Score=29.40 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=50.4
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCcc---------------
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDN--------------- 78 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~~--------------- 78 (157)
--+.++|++|.+++.-+.|+.. ..++.+|..+....-. .. .+|+++--+++..
T Consensus 26 ~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~ 94 (328)
T COG0270 26 EIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVDVLIGGPPCQDFSIAGKRRGYDDPRG 94 (328)
T ss_pred eEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCCEEEeCCCCcchhhcCcccCCcCccc
Confidence 4578999999999999888754 4567788877654321 12 7899986543211
Q ss_pred --cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 --YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 --~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+.+ +..+...++| -.++.+|+-
T Consensus 95 ~L~~~-~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 95 SLFLE-FIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred eeeHH-HHHHHHhhCC-CEEEEecCc
Confidence 223 3344567788 788888873
No 424
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.09 E-value=14 Score=28.49 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=17.7
Q ss_pred cccHHHHHh-hCCCcEEEEEeCChhHHHHHH
Q 031568 2 HLPTKLFMT-GNKILQITAIDVNRETYEIGL 31 (157)
Q Consensus 2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~ 31 (157)
|=|-+..++ ......|++.|.+....+.+.
T Consensus 15 G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 15 GGSLARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred HHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 433333333 335666788888877766654
No 425
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=73.89 E-value=21 Score=25.77 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=39.2
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
+|..+|-++...+..++.++..+.. .+.....++.+.+..+. ...+|+||+|...+
T Consensus 3 ~IlIvdd~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~~-----~~~~dlv~lDi~~~ 58 (238)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDI-EIVGECSNAIEAIGAIH-----RLKPDVVFLDIQMP 58 (238)
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCc-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCC
Confidence 6788999999999999988776521 12223457777666553 35799999997543
No 426
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.86 E-value=16 Score=29.59 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=40.3
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCC
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
++..++++...+|+..|.+++.++.+..+... +++.+.-|+.+. +..+. .++|+|+.-.+
T Consensus 16 va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li------~~~d~VIn~~p 77 (389)
T COG1748 16 VAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALI------KDFDLVINAAP 77 (389)
T ss_pred HHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHH------hcCCEEEEeCC
Confidence 44444555569999999999998887765432 677777777553 33332 35699987554
No 427
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.85 E-value=25 Score=26.79 Aligned_cols=86 Identities=20% Similarity=0.177 Sum_probs=49.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-------CC-C--------CcEEEEEccHHHHHHHHhhcCCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-------GV-D--------HKINFIESEALSVLDQLLKYSENE 64 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-------~~-~--------~~i~~~~~d~~~~l~~~~~~~~~~ 64 (157)
||.+-+..++. .+.+|+.+|.+++.++.+.+.+++. |. . .++++. .|. +. +
T Consensus 15 mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~---~------- 81 (292)
T PRK07530 15 MGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED---L------- 81 (292)
T ss_pred HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH---h-------
Confidence 34333333333 4679999999999988866544321 21 1 123332 232 21 1
Q ss_pred CceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEEe
Q 031568 65 GSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 65 ~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...|+|+.-.... ....+++.+.+.++++.+++.+
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 118 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATN 118 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 2579998765321 2345677777889998887753
No 428
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.77 E-value=24 Score=27.11 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=43.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHc----C--CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKA----G--VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~----~--~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
.+..|+.++.+++.++..++..... + ...++.. ..+..+.+ ...|+||+-.........++.+
T Consensus 23 ~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~D~vi~~v~~~~~~~v~~~l 91 (325)
T PRK00094 23 NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL----------ADADLILVAVPSQALREVLKQL 91 (325)
T ss_pred CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH----------hCCCEEEEeCCHHHHHHHHHHH
Confidence 3668999999988877665531110 0 0012222 23333221 3579999876554556666777
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.++++.+++.
T Consensus 92 ~~~~~~~~~vi~ 103 (325)
T PRK00094 92 KPLLPPDAPIVW 103 (325)
T ss_pred HhhcCCCCEEEE
Confidence 777788776653
No 429
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=73.75 E-value=51 Score=29.31 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=47.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
++.+|..+|-++......+..++..|. .+. ...+..+.+..+. ....||+|++|...+. -.+..+.+..
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~----~~~~~Dlvl~D~~mp~~~G~~~~~~lr~ 750 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGA--QVV-AVGNAAQALETLQ----NSEPFAAALVDFDLPDYDGITLARQLAQ 750 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCC--ceE-EeCCHHHHHHHHH----cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 456899999999999999999988775 343 4567777766553 1356999999975443 2334444443
No 430
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.67 E-value=10 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.4
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 65 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 65 ~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
..+|+||+-.......+.++.+...+.++.+++.
T Consensus 67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence 5799999887655677788888888888877664
No 431
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=73.46 E-value=45 Score=26.66 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=48.1
Q ss_pred hCCCcEEEEEeCCh-hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--cccHHHHHHHH
Q 031568 11 GNKILQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLM 87 (157)
Q Consensus 11 ~~~~~~v~~ve~~~-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~~~~~~~~~ 87 (157)
..|+.+|+..+..- .....+...+...|+ +++++..+..+.+.+.. .++-.+|++.... ......++.+.
T Consensus 86 l~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~l~~~i-----~~~tklV~lesp~Np~g~~~dl~~I~ 158 (377)
T TIGR01324 86 VKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGEDIATLI-----QPNTKVLFLEAPSSITFEIQDIPAIA 158 (377)
T ss_pred cCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHHHHHhc-----CCCceEEEEECCCCCCCcHHHHHHHH
Confidence 45788888776543 334444445555665 34444222113344332 3457899986532 12233455555
Q ss_pred hcccC-CeEEEEecccCCccc
Q 031568 88 KLLKV-GGIAVYDNTLWGGTV 107 (157)
Q Consensus 88 ~~L~~-gG~iv~~~~~~~~~~ 107 (157)
++.+. |..+++|++...|..
T Consensus 159 ~la~~~g~~livD~t~a~g~~ 179 (377)
T TIGR01324 159 KAARNPGIVIMIDNTWAAGLL 179 (377)
T ss_pred HHHHHcCCEEEEECCCccccc
Confidence 55554 566778888655443
No 432
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=72.49 E-value=27 Score=27.30 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=43.5
Q ss_pred HHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
+..+++.. +. +|++++.+++..+.++ ..|...-+.....+..+.+..+. ....+|+++--... ...+
T Consensus 198 ~i~lak~~-G~~~Vi~~~~~~~~~~~~~----~~g~~~vv~~~~~~~~~~l~~~~----~~~~vd~vld~~~~---~~~~ 265 (363)
T cd08279 198 AIQGARIA-GASRIIAVDPVPEKLELAR----RFGATHTVNASEDDAVEAVRDLT----DGRGADYAFEAVGR---AATI 265 (363)
T ss_pred HHHHHHHc-CCCcEEEEcCCHHHHHHHH----HhCCeEEeCCCCccHHHHHHHHc----CCCCCCEEEEcCCC---hHHH
Confidence 33344443 44 4777777777665553 23432111112223333333331 13569977632221 3456
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.|+++|.++.
T Consensus 266 ~~~~~~l~~~G~~v~ 280 (363)
T cd08279 266 RQALAMTRKGGTAVV 280 (363)
T ss_pred HHHHHHhhcCCeEEE
Confidence 778889999999875
No 433
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=72.47 E-value=27 Score=26.51 Aligned_cols=82 Identities=11% Similarity=0.095 Sum_probs=42.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..+|++. +.+++.+.-+++..+.+++ .|...-+.....+..+.+..+. ....+|+|| |+... ...
T Consensus 155 ~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~~~~~d~v~-d~~g~---~~~ 221 (324)
T cd08292 155 LVAMLAAAR-GINVINLVRRDAGVAELRA----LGIGPVVSTEQPGWQDKVREAA----GGAPISVAL-DSVGG---KLA 221 (324)
T ss_pred HHHHHHHHC-CCeEEEEecCHHHHHHHHh----cCCCEEEcCCCchHHHHHHHHh----CCCCCcEEE-ECCCC---hhH
Confidence 333444443 5677666655555444433 3542111221222333343332 234699998 43211 235
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.|+++|.++.
T Consensus 222 ~~~~~~l~~~g~~v~ 236 (324)
T cd08292 222 GELLSLLGEGGTLVS 236 (324)
T ss_pred HHHHHhhcCCcEEEE
Confidence 677889999999885
No 434
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=72.15 E-value=30 Score=24.03 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=44.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+..+|..+|-++......+..++..+. -.+.....+..+.+..+. ..++|+|++|...+. ..+.++.+.+
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~l~~ 73 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSE-LQIVLKTDDYRITIDYLR-----TRPVDLIIMDIDLPGTDGFTFLKRIKQ 73 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCC-ceEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 456899999999999888888865431 123334566666655443 457999999974332 2344444443
No 435
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=72.06 E-value=41 Score=25.59 Aligned_cols=80 Identities=14% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHH
Q 031568 6 KLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 85 (157)
Q Consensus 6 ~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~ 85 (157)
..+++. -+.++++++.+++..+.++ ..|...-+.....+..+.+..+. ....+|+++ |+.. ......
T Consensus 158 ~~lak~-~G~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl-~~~~---~~~~~~ 224 (327)
T PRK10754 158 CQWAKA-LGAKLIGTVGSAQKAQRAK----KAGAWQVINYREENIVERVKEIT----GGKKVRVVY-DSVG---KDTWEA 224 (327)
T ss_pred HHHHHH-cCCEEEEEeCCHHHHHHHH----HCCCCEEEcCCCCcHHHHHHHHc----CCCCeEEEE-ECCc---HHHHHH
Confidence 334444 3677888888877766553 34542222222223334444332 234699777 4421 234566
Q ss_pred HHhcccCCeEEEE
Q 031568 86 LMKLLKVGGIAVY 98 (157)
Q Consensus 86 ~~~~L~~gG~iv~ 98 (157)
..+.++++|.++.
T Consensus 225 ~~~~l~~~g~~v~ 237 (327)
T PRK10754 225 SLDCLQRRGLMVS 237 (327)
T ss_pred HHHHhccCCEEEE
Confidence 7889999999985
No 436
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=72.04 E-value=30 Score=24.02 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=42.8
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+|..+|-++......+..++..|. .+.....+..+.+..+. ...+|+|++|...+. ..+.+..+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~--~v~~~~~~~~~~~~~~~-----~~~~dlvi~d~~~~~~~g~~~~~~l~~ 69 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRK 69 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHH-----ccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 577889999888888888876543 23334567777666553 457999999975432 2334444433
No 437
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.90 E-value=54 Score=26.90 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=42.9
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
..+..++.. +.+|+.+|+++.....+.. .|. ++. +..+.+ ...|+|+.-.. ....+
T Consensus 226 ~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~eal----------~~aDVVI~aTG---~~~vI 281 (425)
T PRK05476 226 GCAQRLRGL-GARVIVTEVDPICALQAAM----DGF----RVM--TMEEAA----------ELGDIFVTATG---NKDVI 281 (425)
T ss_pred HHHHHHHhC-CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHHH----------hCCCEEEECCC---CHHHH
Confidence 334444444 6799999999877544422 232 221 333322 35898876543 24455
Q ss_pred H-HHHhcccCCeEEEEe
Q 031568 84 E-RLMKLLKVGGIAVYD 99 (157)
Q Consensus 84 ~-~~~~~L~~gG~iv~~ 99 (157)
+ .....+++|++++.-
T Consensus 282 ~~~~~~~mK~GailiNv 298 (425)
T PRK05476 282 TAEHMEAMKDGAILANI 298 (425)
T ss_pred HHHHHhcCCCCCEEEEc
Confidence 5 567889999988763
No 438
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=71.81 E-value=11 Score=28.82 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=43.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH-------cCCC---------CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK-------AGVD---------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD- 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~- 75 (157)
.+.+|+.+|.+++.++.+++.+++ .|.- .++. ...+. +. + ..-|+|+.-..
T Consensus 26 ~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~---~-------~~aD~Vieav~e 93 (295)
T PLN02545 26 AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-EE---L-------RDADFIIEAIVE 93 (295)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-HH---h-------CCCCEEEEcCcc
Confidence 367999999999998876654431 2210 0121 22222 21 1 24688887643
Q ss_pred -CcccHHHHHHHHhcccCCeEEEEe
Q 031568 76 -KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 -~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......++..+...++++.+++.+
T Consensus 94 ~~~~k~~v~~~l~~~~~~~~il~s~ 118 (295)
T PLN02545 94 SEDLKKKLFSELDRICKPSAILASN 118 (295)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 222345677777788888877643
No 439
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=71.75 E-value=21 Score=27.60 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=43.0
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.++.+++. -+.+++++. +++..+.++ ..|...-+.....+..+.+..+. .+.+|+|+ |... -...+
T Consensus 170 ~~~~~a~~-~G~~v~~~~-~~~~~~~~~----~~g~~~v~~~~~~~~~~~l~~~~-----~~~~d~vl-~~~g--~~~~~ 235 (339)
T cd08249 170 LAIQLAKL-AGYKVITTA-SPKNFDLVK----SLGADAVFDYHDPDVVEDIRAAT-----GGKLRYAL-DCIS--TPESA 235 (339)
T ss_pred HHHHHHHH-cCCeEEEEE-CcccHHHHH----hcCCCEEEECCCchHHHHHHHhc-----CCCeeEEE-Eeec--cchHH
Confidence 33334444 356777665 555554442 34543222222233444444332 35699887 4321 11356
Q ss_pred HHHHhcccC--CeEEEE
Q 031568 84 ERLMKLLKV--GGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~--gG~iv~ 98 (157)
..+.+.+++ +|.++.
T Consensus 236 ~~~~~~l~~~~~g~~v~ 252 (339)
T cd08249 236 QLCAEALGRSGGGKLVS 252 (339)
T ss_pred HHHHHHHhccCCCEEEE
Confidence 778889999 888875
No 440
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=71.74 E-value=46 Score=26.05 Aligned_cols=83 Identities=19% Similarity=0.225 Sum_probs=45.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+.. +.+++.++.+++....+. +..|.. .+ +...+. +.+... ...+|+||--.. ...
T Consensus 193 G~~av~~Ak~~-G~~vi~~~~~~~~~~~~~---~~~Ga~-~~-i~~~~~-~~~~~~------~~~~D~vid~~g---~~~ 256 (357)
T PLN02514 193 GHMGVKIAKAM-GHHVTVISSSDKKREEAL---EHLGAD-DY-LVSSDA-AEMQEA------ADSLDYIIDTVP---VFH 256 (357)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCHHHHHHHH---HhcCCc-EE-ecCCCh-HHHHHh------cCCCcEEEECCC---chH
Confidence 34444455543 667888888776544433 235543 11 112222 222222 235898874322 234
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 257 ~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 257 PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred HHHHHHHHhccCCEEEEEC
Confidence 6777889999999988643
No 441
>PRK08324 short chain dehydrogenase; Validated
Probab=71.37 E-value=51 Score=28.56 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=36.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
.+.+|+.++.+++..+.+.+.+... .++.++.+|..+. +....+ ..+.+|.|+..+.
T Consensus 445 ~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~---~~g~iDvvI~~AG 507 (681)
T PRK08324 445 EGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL---AFGGVDIVVSNAG 507 (681)
T ss_pred CcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH---HcCCCCEEEECCC
Confidence 3679999999988776665544332 3677888875432 222211 1346999997664
No 442
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=70.79 E-value=41 Score=25.07 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=44.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.+..++.. .+.+|+.++.+++..+.+++ .|...-+.....+..+.+.... ....+|+++-... ....
T Consensus 155 ~~~~~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~~~~~d~v~~~~g----~~~~ 221 (323)
T cd08241 155 AAVQLAKA-LGARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----GGRGVDVVYDPVG----GDVF 221 (323)
T ss_pred HHHHHHHH-hCCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----CCCCcEEEEECcc----HHHH
Confidence 33334443 36678888888776665533 3432112222223434343331 2346998874322 1345
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.++++|.++.
T Consensus 222 ~~~~~~~~~~g~~v~ 236 (323)
T cd08241 222 EASLRSLAWGGRLLV 236 (323)
T ss_pred HHHHHhhccCCEEEE
Confidence 667788999998875
No 443
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=70.75 E-value=26 Score=26.04 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred cccHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..+|++. +.+ |++++.+++..+.+++ .|..+.+.... + .. . ....+|+||-.... .
T Consensus 110 g~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~-~--~~---~-----~~~~~d~vl~~~~~---~ 170 (277)
T cd08255 110 GLLAAQLAKAA-GAREVVGVDPDAARRELAEA----LGPADPVAADT-A--DE---I-----GGRGADVVIEASGS---P 170 (277)
T ss_pred HHHHHHHHHHc-CCCcEEEECCCHHHHHHHHH----cCCCccccccc-h--hh---h-----cCCCCCEEEEccCC---h
Confidence 33444455544 344 8888888777665554 23111111000 0 01 1 13469988854332 3
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.......+.|+++|.++.
T Consensus 171 ~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 171 SALETALRLLRDRGRVVL 188 (277)
T ss_pred HHHHHHHHHhcCCcEEEE
Confidence 356777889999999874
No 444
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=70.61 E-value=35 Score=24.17 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=42.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
.+|..+|-++...+..+..+...|.. + ....+..+.+..+. ...+|+|++|...+. ..+..+.+.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~--v-~~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr 68 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMR--V-FEAETLQRGLLEAA-----TRKPDLIILDLGLPDGDGIEFIRDLR 68 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 36888999999999999988876642 3 23456666555442 457999999975432 234444443
No 445
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=70.49 E-value=50 Score=26.86 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=55.3
Q ss_pred cHHHHHhhCCCcEEEEEeC-ChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 4 PTKLFMTGNKILQITAIDV-NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~-~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
+|++++...++.+|+..+- --.....+.+.+++.|+ .+.++-. +..+....+. .+..++||+..+.....+
T Consensus 92 ~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~d~~~~~~~~~~~~-----~~~tk~v~lEtPsNP~l~ 164 (396)
T COG0626 92 STALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFVDPGDDEALEAAIK-----EPNTKLVFLETPSNPLLE 164 (396)
T ss_pred HHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEECCCChHHHHHHhc-----ccCceEEEEeCCCCcccc
Confidence 4445555556778777664 66677777777888766 3554432 3334443331 246999999875322111
Q ss_pred --HHHHHHhcccCC-eEEEEecccCCcccc
Q 031568 82 --YHERLMKLLKVG-GIAVYDNTLWGGTVA 108 (157)
Q Consensus 82 --~~~~~~~~L~~g-G~iv~~~~~~~~~~~ 108 (157)
.+..+.++-+.. -++++||.+..+...
T Consensus 165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q 194 (396)
T COG0626 165 VPDIPAIARLAKAYGALVVVDNTFATPVLQ 194 (396)
T ss_pred cccHHHHHHHHHhcCCEEEEECCccccccc
Confidence 133333433333 667788876654433
No 446
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=70.29 E-value=41 Score=25.05 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
+..+++. -+.+++.++.+++..+.+++ .+...-+.....+..+.+..+. ....+|+++-.... ..+.
T Consensus 156 ~~~~~~~-~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~g~----~~~~ 222 (323)
T cd05276 156 AIQLAKA-LGARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEAT----GGRGVDVILDMVGG----DYLA 222 (323)
T ss_pred HHHHHHH-cCCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHh----CCCCeEEEEECCch----HHHH
Confidence 3334433 35677777777766655533 3432111111222333333322 13469998854331 2256
Q ss_pred HHHhcccCCeEEEE
Q 031568 85 RLMKLLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~~L~~gG~iv~ 98 (157)
.+.+.++++|.++.
T Consensus 223 ~~~~~~~~~g~~i~ 236 (323)
T cd05276 223 RNLRALAPDGRLVL 236 (323)
T ss_pred HHHHhhccCCEEEE
Confidence 66788899998875
No 447
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=70.09 E-value=35 Score=26.49 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCcEEEEEeCChhHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhccc
Q 031568 13 KILQITAIDVNRETY-EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 91 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~-~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~ 91 (157)
...+|+.++.+++.. +.+++ .|. ..+ +..+. ... -...|+||.-...+.+...++.+.....
T Consensus 201 g~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~~-~~~------l~~aDvVi~at~~~~~~~~~~~~~~~~~ 263 (311)
T cd05213 201 GVAEITIANRTYERAEELAKE----LGG----NAV--PLDEL-LEL------LNEADVVISATGAPHYAKIVERAMKKRS 263 (311)
T ss_pred CCCEEEEEeCCHHHHHHHHHH----cCC----eEE--eHHHH-HHH------HhcCCEEEECCCCCchHHHHHHHHhhCC
Confidence 356899999998754 33333 332 122 12222 221 1358999987765555444555544444
Q ss_pred CCeEEEEeccc
Q 031568 92 VGGIAVYDNTL 102 (157)
Q Consensus 92 ~gG~iv~~~~~ 102 (157)
.++.+++|-..
T Consensus 264 ~~~~~viDlav 274 (311)
T cd05213 264 GKPRLIVDLAV 274 (311)
T ss_pred CCCeEEEEeCC
Confidence 46788887554
No 448
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=70.05 E-value=44 Score=25.47 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+|+++-... ....+....+.|+++|.++.
T Consensus 231 ~~~vd~vld~~g---~~~~~~~~~~~l~~~G~~v~ 262 (306)
T cd08258 231 GDGADVVIECSG---AVPALEQALELLRKGGRIVQ 262 (306)
T ss_pred CCCCCEEEECCC---ChHHHHHHHHHhhcCCEEEE
Confidence 356999774332 23467778889999999885
No 449
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=70.05 E-value=52 Score=25.91 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=48.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..++++....+|++++.+++..+.+++ .|.. -+.....+..+.+..+. .+.+|+|+--.....
T Consensus 189 g~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~i~~~~-----~~~~d~v~d~~g~~~~~~ 258 (375)
T cd08282 189 GLMAAYSAILRGASRVYVVDHVPERLDLAES----IGAI-PIDFSDGDPVEQILGLE-----PGGVDRAVDCVGYEARDR 258 (375)
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCe-EeccCcccHHHHHHHhh-----CCCCCEEEECCCCccccc
Confidence 3344445555433478888888877666654 3421 12111223333333331 246898875332221
Q ss_pred -----cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 -----YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 -----~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
-...+..+.+.|+++|.++.-+.
T Consensus 259 ~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 259 GGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred ccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 12347778899999999875443
No 450
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=69.72 E-value=38 Score=25.85 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=45.6
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
+..+++.....++++++.+++..+.+++ .|...-+... .+..+.+... ..+.+|+++ |+.. ....+.
T Consensus 166 ~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~-~~~~~~i~~~-----~~~~~d~vl-~~~~--~~~~~~ 232 (336)
T cd08252 166 AIQLAKQLTGLTVIATASRPESIAWVKE----LGADHVINHH-QDLAEQLEAL-----GIEPVDYIF-CLTD--TDQHWD 232 (336)
T ss_pred HHHHHHHcCCcEEEEEcCChhhHHHHHh----cCCcEEEeCC-ccHHHHHHhh-----CCCCCCEEE-EccC--cHHHHH
Confidence 3334444422788888888877666533 4542111111 2333333322 134699887 4321 134677
Q ss_pred HHHhcccCCeEEEE
Q 031568 85 RLMKLLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~~L~~gG~iv~ 98 (157)
.+.+.++++|.++.
T Consensus 233 ~~~~~l~~~g~~v~ 246 (336)
T cd08252 233 AMAELIAPQGHICL 246 (336)
T ss_pred HHHHHhcCCCEEEE
Confidence 78889999999885
No 451
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.33 E-value=59 Score=26.25 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=21.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGL 31 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~ 31 (157)
||.+++..++. .+-+|+++|.+++.++..+
T Consensus 11 ~G~~lA~~La~-~G~~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 11 VGLPLAALLAD-LGHEVTGVDIDQEKVDKLN 40 (411)
T ss_pred hhHHHHHHHHh-cCCeEEEEECCHHHHHHhh
Confidence 56555554443 4678999999999887654
No 452
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=69.30 E-value=38 Score=24.03 Aligned_cols=52 Identities=21% Similarity=0.340 Sum_probs=37.8
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
+|..+|-++...+..+..+...|. .+. ...+..+.+..+ ...+|+|++|...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~------~~~~d~vl~d~~~ 54 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGF--NVI-VAHDGEQALDLL------DDSIDLLLLDVMM 54 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHh------hcCCCEEEEeCCC
Confidence 688999999999999998887654 343 445666665544 2469999999654
No 453
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=69.01 E-value=42 Score=24.48 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=45.7
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
+..+++. .+.+|+.++.+++..+.++ ..|. ..-+.....+..+.+..+. +...+|+++ |... ...
T Consensus 121 ~~~~a~~-~g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi-~~~~---~~~ 187 (288)
T smart00829 121 AIQLAQH-LGAEVFATAGSPEKRDFLR----ELGIPDDHIFSSRDLSFADEILRAT----GGRGVDVVL-NSLA---GEF 187 (288)
T ss_pred HHHHHHH-cCCEEEEEeCCHHHHHHHH----HcCCChhheeeCCCccHHHHHHHHh----CCCCcEEEE-eCCC---HHH
Confidence 3334444 4678888888888777664 2444 1112222233434333332 234689887 4322 234
Q ss_pred HHHHHhcccCCeEEEE
Q 031568 83 HERLMKLLKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~ 98 (157)
.+.+.+.++++|.++.
T Consensus 188 ~~~~~~~l~~~g~~v~ 203 (288)
T smart00829 188 LDASLRCLAPGGRFVE 203 (288)
T ss_pred HHHHHHhccCCcEEEE
Confidence 6677789999998885
No 454
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=69.00 E-value=50 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 66 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 66 ~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+|+|+ |+... . .+..+.+.|+++|.++.
T Consensus 221 ~~d~vl-d~~g~--~-~~~~~~~~l~~~G~~v~ 249 (341)
T cd08290 221 RPKLAL-NCVGG--K-SATELARLLSPGGTMVT 249 (341)
T ss_pred CceEEE-ECcCc--H-hHHHHHHHhCCCCEEEE
Confidence 699888 43221 2 34456788999999885
No 455
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.94 E-value=65 Score=26.62 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=52.1
Q ss_pred CCcEEEEEeC-ChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcCCCCCceeEEEEcCCCc--ccHHH---
Q 031568 13 KILQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKD--NYCNY--- 82 (157)
Q Consensus 13 ~~~~v~~ve~-~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~--- 82 (157)
...-++++|. .|.++++.+...++.++.---.-...|..+. +..++ ...||+|++|..-+ .-.+.
T Consensus 129 ~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak-----~~~~DvvIvDTAGRl~ide~Lm~E 203 (451)
T COG0541 129 KKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK-----EEGYDVVIVDTAGRLHIDEELMDE 203 (451)
T ss_pred CceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH-----HcCCCEEEEeCCCcccccHHHHHH
Confidence 3556788996 5899999999998887641111112234443 33333 45799999997532 12333
Q ss_pred HHHHHhcccCCeEEEEecc
Q 031568 83 HERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~~~ 101 (157)
+..+...++|.=++.+-+.
T Consensus 204 l~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 204 LKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHhhcCCCeEEEEEec
Confidence 4455678999877665444
No 456
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=68.80 E-value=49 Score=25.16 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
++++ -+.+|+++..+++..+.+++ .|...-+.....+..+.+.... .+.+|+||-... ...+..+.
T Consensus 159 ~a~~-~g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~-----~~~vd~v~~~~g----~~~~~~~~ 224 (329)
T cd08250 159 LAKL-AGCHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLGEVLKKEY-----PKGVDVVYESVG----GEMFDTCV 224 (329)
T ss_pred HHHH-cCCeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHHHHHHHhc-----CCCCeEEEECCc----HHHHHHHH
Confidence 3433 36677887777766555532 3432111111122333333321 345898874322 24567778
Q ss_pred hcccCCeEEEE
Q 031568 88 KLLKVGGIAVY 98 (157)
Q Consensus 88 ~~L~~gG~iv~ 98 (157)
+.|+++|.++.
T Consensus 225 ~~l~~~g~~v~ 235 (329)
T cd08250 225 DNLALKGRLIV 235 (329)
T ss_pred HHhccCCeEEE
Confidence 89999999874
No 457
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.70 E-value=33 Score=25.98 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=43.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~ 89 (157)
.+.+|+.++.+++.++..++ .|+. ...... ......... .+.+|+||+-.........++.+.+.
T Consensus 22 ~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~-------~~~~d~vila~k~~~~~~~~~~l~~~ 89 (304)
T PRK06522 22 AGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAE-------LGPQDLVILAVKAYQLPAALPSLAPL 89 (304)
T ss_pred CCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhH-------cCCCCEEEEecccccHHHHHHHHhhh
Confidence 35789999998777665543 2331 111100 000000111 25799999987655667778888888
Q ss_pred ccCCeEEEE
Q 031568 90 LKVGGIAVY 98 (157)
Q Consensus 90 L~~gG~iv~ 98 (157)
+.++..|+.
T Consensus 90 l~~~~~iv~ 98 (304)
T PRK06522 90 LGPDTPVLF 98 (304)
T ss_pred cCCCCEEEE
Confidence 888766654
No 458
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=68.58 E-value=40 Score=24.00 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=38.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~~~~~~~-----~~~~dlvild~~l 56 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLDWML 56 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEeCCC
Confidence 4688999999999988888877654 343 4556666655443 4579999999754
No 459
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=68.28 E-value=36 Score=23.43 Aligned_cols=55 Identities=9% Similarity=-0.070 Sum_probs=36.7
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
+|..+|-++......++.++..+- ..+.....+..+.+..+. ...+|+|++|...
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~-----~~~~dlvi~d~~~ 57 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPD-LQVVAEFGSGREALAGLP-----GRGVQVCICDISM 57 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCC-cEEEEEECCHHHHHHHHh-----cCCCCEEEEeCCC
Confidence 688899999988888877754321 122234566666666553 4579999999643
No 460
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.23 E-value=48 Score=24.82 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+++.++.+++..+.+++ .|...-+.....+..+.+.... ....+|+++-.... .....+.+.+++
T Consensus 168 ~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~~~----~~~~~~~~~l~~ 235 (328)
T cd08268 168 AGATVIATTRTSEKRDALLA----LGAAHVIVTDEEDLVAEVLRIT----GGKGVDVVFDPVGG----PQFAKLADALAP 235 (328)
T ss_pred cCCEEEEEcCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHh----CCCCceEEEECCch----HhHHHHHHhhcc
Confidence 36778888887766555532 3432112222223333333221 13469999854332 345666788999
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
+|.++.
T Consensus 236 ~g~~v~ 241 (328)
T cd08268 236 GGTLVV 241 (328)
T ss_pred CCEEEE
Confidence 999884
No 461
>CHL00148 orf27 Ycf27; Reviewed
Probab=68.21 E-value=41 Score=24.00 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=45.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+.-+|..+|-++......+..+...+. .+. ...+..+.+..+. ...+|+|++|...+. ..+.++.+..
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~l~~~~-----~~~~d~illd~~~~~~~g~~~~~~l~~ 74 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGY--EVI-TASDGEEALKLFR-----KEQPDLVILDVMMPKLDGYGVCQEIRK 74 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 456899999999999988888877654 343 3456666665443 457999999964332 2344444443
No 462
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=67.88 E-value=44 Score=24.20 Aligned_cols=77 Identities=8% Similarity=-0.040 Sum_probs=46.0
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc----CCCcccHHHHHHHHhccc
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD----ADKDNYCNYHERLMKLLK 91 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD----~~~~~~~~~~~~~~~~L~ 91 (157)
.+.-+|-++-..+-.+..+...+..-.+-....++.+.+..+. ..++|+|++| .....-.+..+.+.+ ..
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-----~~~pDlvLlDl~~~l~~~~g~~~i~~i~~-~~ 75 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-----SLRPSVVFINEDCFIHDASNSQRIKQIIN-QH 75 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-----ccCCCEEEEeCcccCCCCChHHHHHHHHH-HC
Confidence 3677888888888888888765422123334567777766543 3568999999 333233445555543 33
Q ss_pred CCeE-EEE
Q 031568 92 VGGI-AVY 98 (157)
Q Consensus 92 ~gG~-iv~ 98 (157)
|+.. +++
T Consensus 76 p~~~iivl 83 (207)
T PRK15411 76 PNTLFIVF 83 (207)
T ss_pred CCCeEEEE
Confidence 4444 444
No 463
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=17 Score=25.56 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=54.7
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCCe
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 94 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG 94 (157)
..-+++|.+|-.+..+|-..-+.|...+.+|..-|..+.- -..|..+.+-...+-.+++-.++..-+..|.
T Consensus 96 ~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d---------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt 166 (199)
T KOG4058|consen 96 RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD---------LRDYRNVVIFGAESVMPDLEDKLRTELPANT 166 (199)
T ss_pred CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc---------ccccceEEEeehHHHHhhhHHHHHhhCcCCC
Confidence 5668999999999999999999999888999988887652 2346666655443344444455555677777
Q ss_pred EEEE
Q 031568 95 IAVY 98 (157)
Q Consensus 95 ~iv~ 98 (157)
.++.
T Consensus 167 ~vva 170 (199)
T KOG4058|consen 167 RVVA 170 (199)
T ss_pred eEEE
Confidence 7775
No 464
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=67.57 E-value=27 Score=31.16 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
+..+|..+|-++......++.++..|. .+. ...|..+.+..+. ...||+|++|...+.
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvl~D~~mp~ 758 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGH--KVT-LAESGQSALECFH-----QHAFDLALLDINLPD 758 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----CCCCCEEEECCCCCC
Confidence 456799999999999999999988875 343 4567777776653 467999999975443
No 465
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.56 E-value=54 Score=25.15 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=44.5
Q ss_pred HHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
+..+++.. + .++++++.+++..+.+++ .|.. -+.....+..+.+.++. +.+.+|+|+--.. ....+
T Consensus 183 ~~~~a~~~-g~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~l~~~~----~~~~~dvvid~~~---~~~~~ 249 (344)
T cd08284 183 AVLSAQVL-GAARVFAVDPVPERLERAAA----LGAE-PINFEDAEPVERVREAT----EGRGADVVLEAVG---GAAAL 249 (344)
T ss_pred HHHHHHHc-CCceEEEEcCCHHHHHHHHH----hCCe-EEecCCcCHHHHHHHHh----CCCCCCEEEECCC---CHHHH
Confidence 33344443 4 478888877766655543 3431 12122223333333332 2356997764322 13457
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
..+.+.++++|.++.
T Consensus 250 ~~~~~~l~~~g~~v~ 264 (344)
T cd08284 250 DLAFDLVRPGGVISS 264 (344)
T ss_pred HHHHHhcccCCEEEE
Confidence 778889999999885
No 466
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=67.07 E-value=46 Score=24.57 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=43.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 87 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~ 87 (157)
..+|..+|-++......++.+...+.. .+.....+..+.+..+. ...+|+|++|...+.. ...++.+.
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~-~~~~~a~~~~eal~~l~-----~~~~DlvllD~~mp~~dG~~~l~~i~ 71 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDM-EVVGVAHNGVDALELIK-----EQQPDVVVLDIIMPHLDGIGVLEKLN 71 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357899999999999998888653211 22224567777666553 4679999999754322 33444444
No 467
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=66.93 E-value=51 Score=24.64 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=39.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+++.+..+++..+.++ ..|.+..+.....+..+.+.... ..+.+|+++-... ...+..+.+.+++
T Consensus 163 ~g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~~i~~~~----~~~~~~~~~~l~~ 230 (325)
T TIGR02824 163 FGARVFTTAGSDEKCAACE----ALGADIAINYREEDFVEVVKAET----GGKGVDVILDIVG----GSYLNRNIKALAL 230 (325)
T ss_pred cCCEEEEEeCCHHHHHHHH----HcCCcEEEecCchhHHHHHHHHc----CCCCeEEEEECCc----hHHHHHHHHhhcc
Confidence 3667777777776655442 33442111111122323333221 1346998874322 2346667788999
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
+|.++.
T Consensus 231 ~g~~v~ 236 (325)
T TIGR02824 231 DGRIVQ 236 (325)
T ss_pred CcEEEE
Confidence 999885
No 468
>PLN02494 adenosylhomocysteinase
Probab=66.58 E-value=47 Score=27.71 Aligned_cols=75 Identities=11% Similarity=0.033 Sum_probs=44.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|...+..++.+ +.+|+.+|.++.....+.. .|.. +. +..+.+ ...|+|+....... -
T Consensus 266 Gr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~----~G~~----vv--~leEal----------~~ADVVI~tTGt~~--v 322 (477)
T PLN02494 266 GKGCAAAMKAA-GARVIVTEIDPICALQALM----EGYQ----VL--TLEDVV----------SEADIFVTTTGNKD--I 322 (477)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCchhhHHHHh----cCCe----ec--cHHHHH----------hhCCEEEECCCCcc--c
Confidence 44444555554 6799999999876544422 2332 11 333332 24799987544222 1
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+....+..+++||+++.-
T Consensus 323 I~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred hHHHHHhcCCCCCEEEEc
Confidence 236778899999999863
No 469
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=66.39 E-value=32 Score=30.02 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=47.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
++.+|..+|-++......++.++..|. .+. ...+..+.+..+. ...||+|++|...+. ..+..+.+.
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~Dlvl~D~~mp~~~G~e~~~~ir 592 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGN--SVD-VAMTGKEALEMFD-----PDEYDLVLLDIQLPDMTGLDIARELR 592 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHhh-----cCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 357899999999999999999988775 343 3567777776553 467999999975443 233444443
No 470
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=65.76 E-value=10 Score=25.58 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+.||+||+-.......+.++.+.+.+.+++.+++
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 46899999987655677888999999999976665
No 471
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=65.60 E-value=53 Score=24.79 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=37.5
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 93 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g 93 (157)
+.+++.+..+++..+.++ ..|.+.-+.....+..+.+..+. ....+|+|+ |.... . ....+.+.|+++
T Consensus 163 g~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vl-~~~g~--~-~~~~~~~~l~~~ 230 (323)
T cd05282 163 GFKTINVVRRDEQVEELK----ALGADEVIDSSPEDLAQRVKEAT----GGAGARLAL-DAVGG--E-SATRLARSLRPG 230 (323)
T ss_pred CCeEEEEecChHHHHHHH----hcCCCEEecccchhHHHHHHHHh----cCCCceEEE-ECCCC--H-HHHHHHHhhCCC
Confidence 566777666665544443 34442112222222333333331 234699888 43221 2 234567889999
Q ss_pred eEEEE
Q 031568 94 GIAVY 98 (157)
Q Consensus 94 G~iv~ 98 (157)
|.++.
T Consensus 231 g~~v~ 235 (323)
T cd05282 231 GTLVN 235 (323)
T ss_pred CEEEE
Confidence 99874
No 472
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=65.60 E-value=48 Score=23.80 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=45.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
+..+|..+|-++......+..++..|.. +. ...+..+.+..+. ...||+|++|...+. ..+..+.+.
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~--v~-~~~~~~~~~~~~~-----~~~~dlvild~~l~~~~g~~~~~~lr 72 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQ--VR-SAANAEQMDRLLT-----RESFHLMVLDLMLPGEDGLSICRRLR 72 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4568999999999999999999877652 33 4466666555442 467999999975432 234444443
No 473
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=65.47 E-value=55 Score=25.14 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=40.5
Q ss_pred HHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 8 FMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 8 l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
+|+.. +.+ ++.+..+++..+.++ ..|...-+...... .+.+.... ....+|+++-... -...+..+
T Consensus 178 lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~~~~~d~vld~~g---~~~~~~~~ 244 (343)
T cd08236 178 WLKIL-GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----EGRGADLVIEAAG---SPATIEQA 244 (343)
T ss_pred HHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----CCCCCCEEEECCC---CHHHHHHH
Confidence 44433 444 777777766555443 23432112111112 22222221 1345999884322 13456778
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.|+++|.++.
T Consensus 245 ~~~l~~~G~~v~ 256 (343)
T cd08236 245 LALARPGGKVVL 256 (343)
T ss_pred HHHhhcCCEEEE
Confidence 899999999875
No 474
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=65.45 E-value=34 Score=26.38 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=44.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++.++++. +.+++.++.+++..+.+++ .|.. . ++...-....... .+.+|+||--.... .
T Consensus 182 G~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~----~g~~-~--vi~~~~~~~~~~~------~~~~d~v~~~~g~~---~ 244 (337)
T cd05283 182 GHLAVKFAKAL-GAEVTAFSRSPSKKEDALK----LGAD-E--FIATKDPEAMKKA------AGSLDLIIDTVSAS---H 244 (337)
T ss_pred HHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----cCCc-E--EecCcchhhhhhc------cCCceEEEECCCCc---c
Confidence 33444455543 6688888888877666643 3432 1 1211111111221 35699998433321 2
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.+..+.+.|+++|.++.
T Consensus 245 ~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 245 DLDPYLSLLKPGGTLVL 261 (337)
T ss_pred hHHHHHHHhcCCCEEEE
Confidence 35677888999998875
No 475
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=65.24 E-value=22 Score=29.49 Aligned_cols=81 Identities=10% Similarity=-0.064 Sum_probs=45.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcCC------Cc-ccHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDAD------KD-NYCNYHE 84 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~~------~~-~~~~~~~ 84 (157)
..-.++.||.+..|..+...++........+.+..--.. ..++.. ....||+|++... +. .....-.
T Consensus 225 t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~-----~~~~yDlvi~ah~l~~~~s~~~R~~v~~s 299 (491)
T KOG2539|consen 225 TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPID-----IKNGYDLVICAHKLHELGSKFSRLDVPES 299 (491)
T ss_pred ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCC-----cccceeeEEeeeeeeccCCchhhhhhhHH
Confidence 356789999999999999988865211112222210111 112211 2456999997542 11 1112223
Q ss_pred HHHhcccCCeEEEE
Q 031568 85 RLMKLLKVGGIAVY 98 (157)
Q Consensus 85 ~~~~~L~~gG~iv~ 98 (157)
......++|+.+|.
T Consensus 300 ~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 300 LWRKTDRSGYFLVI 313 (491)
T ss_pred HHHhccCCCceEEE
Confidence 34467889998886
No 476
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=64.78 E-value=55 Score=24.26 Aligned_cols=15 Identities=0% Similarity=0.045 Sum_probs=12.0
Q ss_pred CCcEEEEEeCChhHH
Q 031568 13 KILQITAIDVNRETY 27 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~ 27 (157)
.+.+|..+|.||..-
T Consensus 29 ~G~~VlliD~DpQ~s 43 (231)
T PRK13849 29 DGKRVALFEADENRP 43 (231)
T ss_pred CCCcEEEEeCCCCCC
Confidence 477999999988753
No 477
>PRK08655 prephenate dehydrogenase; Provisional
Probab=64.72 E-value=41 Score=27.58 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=34.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+|++++.+++..... ....|. . ...+..+.+ ...|+|++-.+.....+.++.+.+.+++
T Consensus 23 ~G~~V~v~~r~~~~~~~~---a~~~gv----~-~~~~~~e~~----------~~aDvVIlavp~~~~~~vl~~l~~~l~~ 84 (437)
T PRK08655 23 KGFEVIVTGRDPKKGKEV---AKELGV----E-YANDNIDAA----------KDADIVIISVPINVTEDVIKEVAPHVKE 84 (437)
T ss_pred CCCEEEEEECChHHHHHH---HHHcCC----e-eccCHHHHh----------ccCCEEEEecCHHHHHHHHHHHHhhCCC
Confidence 356899999988764221 222232 1 122222221 2467777665544445555666566666
Q ss_pred CeEEE
Q 031568 93 GGIAV 97 (157)
Q Consensus 93 gG~iv 97 (157)
|.+++
T Consensus 85 ~~iVi 89 (437)
T PRK08655 85 GSLLM 89 (437)
T ss_pred CCEEE
Confidence 55443
No 478
>PLN02702 L-idonate 5-dehydrogenase
Probab=64.71 E-value=66 Score=25.11 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=48.0
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE--EEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~--~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
..+..++++.....+++++.+++..+.+++ .|.+..+.+ ...+..+.+..+... ..+.+|+|+--.. ..
T Consensus 195 ~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~vid~~g---~~ 265 (364)
T PLN02702 195 LVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA--MGGGIDVSFDCVG---FN 265 (364)
T ss_pred HHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh--cCCCCCEEEECCC---CH
Confidence 334445555433458888888777665544 454322222 113444433322100 1346998874322 13
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
..+..+.+.|+++|.++.
T Consensus 266 ~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 266 KTMSTALEATRAGGKVCL 283 (364)
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 457888899999999875
No 479
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=64.70 E-value=77 Score=25.93 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCcEEEEEeCChhH---HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 13 KILQITAIDVNRET---YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~---~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
.+.+|..++.|+.. .++.+.+.+..++. +... .+..+....+.. ...+|+|++|..
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~~-~~~~~l~~~l~~----~~~~DlVlIDt~ 308 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEVV-YDPKELAKALEQ----LRDCDVILIDTA 308 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEcc-CCHHhHHHHHHH----hCCCCEEEEeCC
Confidence 45689889988853 34555555556653 2211 222232222221 246999999964
No 480
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=64.20 E-value=61 Score=24.56 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=41.9
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM 87 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~ 87 (157)
+|+.. +.+|++++.+++..+.++ ..|.. .+--......+.+..+ ....+|.|+ |+.. ...++.+.
T Consensus 166 ~a~~~-g~~v~~~~~~~~~~~~~~----~~g~~-~v~~~~~~~~~~~~~~-----~~~~~d~vl-d~~g---~~~~~~~~ 230 (326)
T cd08289 166 ILAKL-GYEVVASTGKADAADYLK----KLGAK-EVIPREELQEESIKPL-----EKQRWAGAV-DPVG---GKTLAYLL 230 (326)
T ss_pred HHHHC-CCeEEEEecCHHHHHHHH----HcCCC-EEEcchhHHHHHHHhh-----ccCCcCEEE-ECCc---HHHHHHHH
Confidence 44433 667888888777655553 34542 2211111111222222 134589876 5432 23567788
Q ss_pred hcccCCeEEEEe
Q 031568 88 KLLKVGGIAVYD 99 (157)
Q Consensus 88 ~~L~~gG~iv~~ 99 (157)
+.++++|.++.-
T Consensus 231 ~~l~~~G~~i~~ 242 (326)
T cd08289 231 STLQYGGSVAVS 242 (326)
T ss_pred HHhhcCCEEEEE
Confidence 899999998763
No 481
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=64.07 E-value=53 Score=23.77 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=50.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L 90 (157)
..+|..+|-++...+..+..++.. ++ .+-....+..+.+..+. ...+|+|++|...+. ..+..+.+.+.-
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~~v~~a~~~~~al~~~~-----~~~pdlvllD~~mp~~~gle~~~~l~~~~ 76 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGF--SQILLAGNLAQARMMIE-----RFKPGLILLDNYLPDGRGINLLHELVQAH 76 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHhcC
Confidence 357999999999998888888754 32 23345677777766553 457999999975432 234455554433
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.+..++++
T Consensus 77 ~~~~iivl 84 (225)
T PRK10046 77 YPGDVVFT 84 (225)
T ss_pred CCCCEEEE
Confidence 33445554
No 482
>PRK13856 two-component response regulator VirG; Provisional
Probab=63.94 E-value=53 Score=23.76 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=38.4
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
+|..+|-++......+..++..|. .+. ...+..+.+..+. ...||+|++|...
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~d~~l 55 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAF--KVT-AVADSQQFNRVLA-----SETVDVVVVDLNL 55 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 688999999999999888887664 343 3456666555442 4579999999753
No 483
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=63.94 E-value=15 Score=28.33 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=27.0
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEE-ecc
Q 031568 65 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY-DNT 101 (157)
Q Consensus 65 ~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~-~~~ 101 (157)
+.||+||+-.-.....+.++.+.+++.+++.++. .|-
T Consensus 69 ~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 69 EPIHRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred cccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 5799999876444456777888888999887754 443
No 484
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=63.67 E-value=48 Score=23.21 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=38.8
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
.+|..+|-++...+..+..++..+. .+. ...+..+.+..+. ...+|+|++|...+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~d~vi~d~~~~ 57 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGY--DVV-EAGDGDEALTLIN-----ERGPDLILLDWMLP 57 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EEcCHHHHHHHHH-----hcCCCEEEEECCCC
Confidence 4688999999999988888877654 343 3456666655443 45799999997543
No 485
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.58 E-value=49 Score=26.69 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCc-EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEEe
Q 031568 28 EIGLPIIKKAGVDHK-INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 28 ~~a~~~~~~~~~~~~-i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.-.++|++++|+... ++++ +..+.+ .+.+|+|++--++. .....+..+...|.+|+.|++-
T Consensus 78 ~~~~~n~~~n~~~~~~~~~~--~~~~~~---------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 78 LATRENLRLNGIDESSVKFL--DSTADY---------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHHHHHcCCCcccceee--cccccc---------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 334779999988643 5555 222222 34699999876553 2344566777899999998864
No 486
>PHA02518 ParA-like protein; Provisional
Probab=63.39 E-value=38 Score=24.00 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
.+.+|..||.||..-..........+. +.+.... .+..+.+..+ ...||+|++|.+.
T Consensus 28 ~g~~vlliD~D~q~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~------~~~~d~viiD~p~ 86 (211)
T PHA02518 28 DGHKVLLVDLDPQGSSTDWAEAREEGE-PLIPVVRMGKSIRADLPKV------ASGYDYVVVDGAP 86 (211)
T ss_pred CCCeEEEEeCCCCCChHHHHHhcccCC-CCCchhhccHHHHHHHHHH------hccCCEEEEeCCC
Confidence 578999999998742221111111110 1122111 1223334433 3579999999753
No 487
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=62.91 E-value=62 Score=24.24 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=41.4
Q ss_pred HHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 8 FMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 8 l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
+|++. +.+ ++++..+++..+.+ +..|...-+.-...+..+.+..+. ....+|+++-... .......+
T Consensus 148 la~~~-g~~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~l~~~~----~~~~vd~vld~~g---~~~~~~~~ 215 (312)
T cd08269 148 LAAAA-GARRVIAIDRRPARLALA----RELGATEVVTDDSEAIVERVRELT----GGAGADVVIEAVG---HQWPLDLA 215 (312)
T ss_pred HHHHc-CCcEEEEECCCHHHHHHH----HHhCCceEecCCCcCHHHHHHHHc----CCCCCCEEEECCC---CHHHHHHH
Confidence 44443 555 77777776665533 233432111111122333333331 2346999875332 13356777
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.|+++|.++.
T Consensus 216 ~~~l~~~g~~~~ 227 (312)
T cd08269 216 GELVAERGRLVI 227 (312)
T ss_pred HHHhccCCEEEE
Confidence 889999999885
No 488
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=62.84 E-value=37 Score=21.67 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=46.3
Q ss_pred CCcEEE-EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhccc
Q 031568 13 KILQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 91 (157)
Q Consensus 13 ~~~~v~-~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~ 91 (157)
++.+++ .+|.+++..+.+ .+..+. . ...|..+.+. ...+|+|++..+...- .+.+...++
T Consensus 24 ~~~~v~~v~d~~~~~~~~~---~~~~~~----~-~~~~~~~ll~--------~~~~D~V~I~tp~~~h---~~~~~~~l~ 84 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAF---AEKYGI----P-VYTDLEELLA--------DEDVDAVIIATPPSSH---AEIAKKALE 84 (120)
T ss_dssp TTEEEEEEECSSHHHHHHH---HHHTTS----E-EESSHHHHHH--------HTTESEEEEESSGGGH---HHHHHHHHH
T ss_pred CCcEEEEEEeCCHHHHHHH---HHHhcc----c-chhHHHHHHH--------hhcCCEEEEecCCcch---HHHHHHHHH
Confidence 677776 578888776655 344554 2 6778877765 2479999998765433 344455566
Q ss_pred CCeEEEEeccc
Q 031568 92 VGGIAVYDNTL 102 (157)
Q Consensus 92 ~gG~iv~~~~~ 102 (157)
.|--++++-..
T Consensus 85 ~g~~v~~EKP~ 95 (120)
T PF01408_consen 85 AGKHVLVEKPL 95 (120)
T ss_dssp TTSEEEEESSS
T ss_pred cCCEEEEEcCC
Confidence 66677776443
No 489
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=62.84 E-value=40 Score=28.82 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=46.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
.+..++.+|.||+.++.+++ .| ..++.||+.+. +.+. .-++.|.+++-.+.+......-...+.+
T Consensus 422 ~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 422 NKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred CCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 47789999999999887765 23 46789998753 3332 1357888887654322111222233556
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.|...+++
T Consensus 489 ~p~~~Iia 496 (601)
T PRK03659 489 FPHLHILA 496 (601)
T ss_pred CCCCeEEE
Confidence 77777775
No 490
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=62.66 E-value=67 Score=24.51 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCcEEEEEeCChh---HHHHHHHHHHHcCCCCcEEEEE----ccHHH----HHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 13 KILQITAIDVNRE---TYEIGLPIIKKAGVDHKINFIE----SEALS----VLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 13 ~~~~v~~ve~~~~---~~~~a~~~~~~~~~~~~i~~~~----~d~~~----~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
.+.+|..+|.|.. ..++.+.+.+..+ +.++. .|..+ .+.... .+.||+|++|....
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~----i~~~~~~~~~dp~~~~~~~l~~~~-----~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLG----VDVIKQKEGADPAAVAFDAIQKAK-----ARNIDVVLIDTAGR 165 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCC----eEEEeCCCCCCHHHHHHHHHHHHH-----HCCCCEEEEeCCCC
Confidence 3568877877753 3455555566555 33332 12222 222221 35699999998643
No 491
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=62.18 E-value=69 Score=24.53 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 8 FMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 8 l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
+|+. .+.+ ++++..+++..+.+++ .|...-+.....+..+.+..+. ....+|+|+-.... ...+..+
T Consensus 184 la~~-~g~~~v~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~~~~vd~vld~~~~---~~~~~~~ 251 (343)
T cd08235 184 LAKA-SGARKVIVSDLNEFRLEFAKK----LGADYTIDAAEEDLVEKVRELT----DGRGADVVIVATGS---PEAQAQA 251 (343)
T ss_pred HHHH-cCCcEEEEECCCHHHHHHHHH----hCCcEEecCCccCHHHHHHHHh----CCcCCCEEEECCCC---hHHHHHH
Confidence 4433 4566 8888888877766532 3432111111222323233222 13459998743321 3456777
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.|+++|.++.
T Consensus 252 ~~~l~~~g~~v~ 263 (343)
T cd08235 252 LELVRKGGRILF 263 (343)
T ss_pred HHHhhcCCEEEE
Confidence 888999999886
No 492
>PRK08507 prephenate dehydrogenase; Validated
Probab=62.02 E-value=39 Score=25.55 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=38.8
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCCe
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 94 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG 94 (157)
.+|+++|.+++..+.+++ .|..+. ..+..+ + .+ .|+||+-.+.....+.+..+.+ ++++.
T Consensus 26 ~~v~~~d~~~~~~~~~~~----~g~~~~----~~~~~~----~------~~-aD~Vilavp~~~~~~~~~~l~~-l~~~~ 85 (275)
T PRK08507 26 SKVYGYDHNELHLKKALE----LGLVDE----IVSFEE----L------KK-CDVIFLAIPVDAIIEILPKLLD-IKENT 85 (275)
T ss_pred CEEEEEcCCHHHHHHHHH----CCCCcc----cCCHHH----H------hc-CCEEEEeCcHHHHHHHHHHHhc-cCCCC
Confidence 479999999988766542 343211 112222 1 22 7899887766566667777767 77776
Q ss_pred EEE
Q 031568 95 IAV 97 (157)
Q Consensus 95 ~iv 97 (157)
+++
T Consensus 86 iv~ 88 (275)
T PRK08507 86 TII 88 (275)
T ss_pred EEE
Confidence 554
No 493
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=61.96 E-value=56 Score=24.93 Aligned_cols=78 Identities=12% Similarity=0.064 Sum_probs=44.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++.+++. .+.++++++.+++..+.+++. ... -+... +..+.+..+ +.+|+++ |+.. . .
T Consensus 176 g~~~~~la~~-~g~~vi~~~~~~~~~~~~~~~-~~~----~~~~~--~~~~~v~~~-------~~~d~~l-d~~g--~-~ 236 (334)
T PRK13771 176 GIHAIQVAKA-LGAKVIAVTSSESKAKIVSKY-ADY----VIVGS--KFSEEVKKI-------GGADIVI-ETVG--T-P 236 (334)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHH-HHH----hcCch--hHHHHHHhc-------CCCcEEE-EcCC--h-H
Confidence 3444455554 377888888888887777553 111 01111 222222221 2588887 4321 1 2
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.+..+.+.|+++|.++.
T Consensus 237 ~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 237 TLEESLRSLNMGGKIIQ 253 (334)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 46778889999999875
No 494
>PLN02256 arogenate dehydrogenase
Probab=61.73 E-value=66 Score=25.01 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=35.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH-HhcccC
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL-MKLLKV 92 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~-~~~L~~ 92 (157)
+.+|+++|.++. .+.+ ...|. .. ..+..+.+ ....|+|++-.......++++.+ ...+++
T Consensus 59 G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~---------~~~aDvVilavp~~~~~~vl~~l~~~~l~~ 119 (304)
T PLN02256 59 GHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC---------EEHPDVVLLCTSILSTEAVLRSLPLQRLKR 119 (304)
T ss_pred CCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---------hCCCCEEEEecCHHHHHHHHHhhhhhccCC
Confidence 568999999863 2222 23343 11 23433332 12468888876554556666665 455666
Q ss_pred CeEE
Q 031568 93 GGIA 96 (157)
Q Consensus 93 gG~i 96 (157)
+.++
T Consensus 120 ~~iv 123 (304)
T PLN02256 120 STLF 123 (304)
T ss_pred CCEE
Confidence 6544
No 495
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.57 E-value=40 Score=21.62 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEE
Q 031568 26 TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 96 (157)
Q Consensus 26 ~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~i 96 (157)
+++..++.+++.|++ +++......+.-.. .+.+|+|++-+.. .-.++.+.+.+.+.|+-
T Consensus 16 la~km~~~a~~~gi~--~~i~a~~~~e~~~~-------~~~~Dvill~PQv---~~~~~~i~~~~~~~~ip 74 (99)
T cd05565 16 LANALNKGAKERGVP--LEAAAGAYGSHYDM-------IPDYDLVILAPQM---ASYYDELKKDTDRLGIK 74 (99)
T ss_pred HHHHHHHHHHHCCCc--EEEEEeeHHHHHHh-------ccCCCEEEEcChH---HHHHHHHHHHhhhcCCC
Confidence 455667778888884 77888777775432 3569999988753 34456666666666653
No 496
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=61.50 E-value=41 Score=29.78 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=47.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~ 87 (157)
.+|..+|-++......++.++..|. .+. ...+..+.+..+. ...||+|++|...+.. .+..+.+.
T Consensus 691 ~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~~G~~~~~~ir 757 (921)
T PRK15347 691 LQILLVDDVETNRDIIGMMLVELGQ--QVT-TAASGTEALELGR-----QHRFDLVLMDIRMPGLDGLETTQLWR 757 (921)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4799999999999999999988875 343 4567777776553 5679999999754432 33444443
No 497
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=61.41 E-value=61 Score=23.60 Aligned_cols=82 Identities=13% Similarity=-0.044 Sum_probs=41.7
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG-VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
+..+++. -+.+++.+..+++..+.+++.. + ...-+.....+..+.+..+. ....+|+++--.. . . .+
T Consensus 125 ~~~~a~~-~g~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~~-~--~-~~ 192 (293)
T cd05195 125 AIQLAQH-LGAEVFATVGSEEKREFLRELG---GPVDHIFSSRDLSFADGILRAT----GGRGVDVVLNSLS-G--E-LL 192 (293)
T ss_pred HHHHHHH-cCCEEEEEeCCHHHHHHHHHhC---CCcceEeecCchhHHHHHHHHh----CCCCceEEEeCCC-c--h-HH
Confidence 3334443 3567777777766655554321 1 11111111112333333221 1346898873222 1 2 56
Q ss_pred HHHHhcccCCeEEEE
Q 031568 84 ERLMKLLKVGGIAVY 98 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~ 98 (157)
+.+.+.++++|.++.
T Consensus 193 ~~~~~~l~~~g~~v~ 207 (293)
T cd05195 193 RASWRCLAPFGRFVE 207 (293)
T ss_pred HHHHHhcccCceEEE
Confidence 777889999998875
No 498
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=61.35 E-value=11 Score=28.20 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK 36 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~ 36 (157)
.=..|++-|+|++++++|++|+..
T Consensus 76 ~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 76 RLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp GEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHhHhcccCCHHHHHHHHHhhhh
Confidence 356899999999999999999854
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=61.23 E-value=92 Score=25.61 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=42.6
Q ss_pred CcEEEEEeCC---hhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHH----HHHhhcCCCCCceeEEEEcCCCcc-----cH
Q 031568 14 ILQITAIDVN---RETYEIGLPIIKKAGVDHKINFIE-SEALSVL----DQLLKYSENEGSFDYAFVDADKDN-----YC 80 (157)
Q Consensus 14 ~~~v~~ve~~---~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l----~~~~~~~~~~~~fD~I~iD~~~~~-----~~ 80 (157)
+.+|..++.| +.+.++.+......++. ...... .+..+.. ..+. ...||+|++|..... ..
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp-~~~~~~~~~P~~i~~~al~~~~-----~~~~DvVIIDTaGr~~~d~~l~ 201 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVP-VFALGKGQSPVEIARRALEYAK-----ENGFDVVIVDTAGRLQIDEELM 201 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCc-eEecCCCCCHHHHHHHHHHHHH-----hcCCCEEEEeCCCccccCHHHH
Confidence 5566666665 33455555666655553 111111 2333332 2221 356999999986432 22
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
.-+..+.+.+.|.+++.+-+
T Consensus 202 ~eL~~i~~~~~p~e~lLVvd 221 (428)
T TIGR00959 202 EELAAIKEILNPDEILLVVD 221 (428)
T ss_pred HHHHHHHHhhCCceEEEEEe
Confidence 33444556778888766543
No 500
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=61.19 E-value=11 Score=28.60 Aligned_cols=55 Identities=7% Similarity=-0.050 Sum_probs=40.3
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEEe
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...++.||+.+.++..... .+++|..|.|+-.+ .-.+++..+.+..++||.+..-
T Consensus 147 ~l~l~~gd~~~~~p~~~~~---~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~ 207 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRR---RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF 207 (252)
T ss_pred eeeeeeeehhhcCCccccc---ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech
Confidence 4678999999888765210 11799999997322 2356788888999999999863
Done!