Query 031568
Match_columns 157
No_of_seqs 218 out of 2363
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 01:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dr5_A Putative O-methyltransf 100.0 7E-29 2.4E-33 182.2 15.2 144 2-156 68-213 (221)
2 3c3y_A Pfomt, O-methyltransfer 100.0 5.5E-28 1.9E-32 179.0 16.3 155 1-156 81-236 (237)
3 3r3h_A O-methyltransferase, SA 100.0 6.1E-28 2.1E-32 179.3 14.4 149 1-156 71-220 (242)
4 1sui_A Caffeoyl-COA O-methyltr 99.9 4.9E-27 1.7E-31 174.9 15.4 155 1-156 90-246 (247)
5 3ntv_A MW1564 protein; rossman 99.9 4.1E-27 1.4E-31 173.6 14.4 149 1-156 82-231 (232)
6 3cbg_A O-methyltransferase; cy 99.9 1E-25 3.6E-30 166.1 17.3 147 1-156 83-232 (232)
7 3tr6_A O-methyltransferase; ce 99.9 1.4E-25 4.8E-30 163.9 17.2 149 1-156 75-224 (225)
8 2avd_A Catechol-O-methyltransf 99.9 3E-25 1E-29 162.5 17.4 149 1-156 80-229 (229)
9 3tfw_A Putative O-methyltransf 99.9 4.6E-25 1.6E-29 164.2 17.7 146 1-156 74-225 (248)
10 3duw_A OMT, O-methyltransferas 99.9 8.5E-25 2.9E-29 159.6 18.3 148 1-156 69-222 (223)
11 3c3p_A Methyltransferase; NP_9 99.9 6.5E-24 2.2E-28 153.8 12.8 142 1-156 67-209 (210)
12 2hnk_A SAM-dependent O-methylt 99.9 7.3E-23 2.5E-27 151.1 17.8 151 1-157 71-232 (239)
13 2gpy_A O-methyltransferase; st 99.9 2.1E-22 7.2E-27 148.0 13.2 150 1-156 65-214 (233)
14 3u81_A Catechol O-methyltransf 99.9 2.2E-21 7.7E-26 141.6 14.3 134 1-156 69-213 (221)
15 3cvo_A Methyltransferase-like 99.8 1.1E-18 3.6E-23 126.0 8.5 122 1-142 39-180 (202)
16 2wk1_A NOVP; transferase, O-me 99.6 1.3E-15 4.5E-20 115.0 9.1 129 1-153 117-278 (282)
17 2o07_A Spermidine synthase; st 99.6 4E-15 1.4E-19 113.7 11.3 134 2-155 107-255 (304)
18 2b2c_A Spermidine synthase; be 99.6 3.4E-15 1.2E-19 114.6 9.7 135 2-155 120-268 (314)
19 1uir_A Polyamine aminopropyltr 99.5 2.5E-13 8.6E-18 104.1 12.8 136 2-155 89-241 (314)
20 1mjf_A Spermidine synthase; sp 99.5 3.5E-13 1.2E-17 101.7 12.8 132 2-155 87-238 (281)
21 3fpf_A Mtnas, putative unchara 99.5 2.9E-13 9.8E-18 102.8 11.3 87 5-101 137-223 (298)
22 1xj5_A Spermidine synthase 1; 99.5 4.6E-13 1.6E-17 103.5 12.2 97 2-103 132-239 (334)
23 1iy9_A Spermidine synthase; ro 99.5 6.7E-13 2.3E-17 99.9 11.3 93 2-100 87-189 (275)
24 3m6w_A RRNA methylase; rRNA me 99.4 3.7E-12 1.3E-16 102.2 15.9 94 2-103 113-232 (464)
25 3p9n_A Possible methyltransfer 99.4 3.1E-12 1.1E-16 90.7 12.9 94 2-102 56-155 (189)
26 3m4x_A NOL1/NOP2/SUN family pr 99.4 4.6E-12 1.6E-16 101.5 14.8 95 2-103 117-237 (456)
27 1xdz_A Methyltransferase GIDB; 99.4 8.5E-12 2.9E-16 91.7 14.2 93 1-99 81-173 (240)
28 3e05_A Precorrin-6Y C5,15-meth 99.4 1.7E-12 5.7E-17 93.0 9.3 92 2-101 52-143 (204)
29 1inl_A Spermidine synthase; be 99.4 3.6E-12 1.2E-16 96.9 11.4 93 2-100 102-205 (296)
30 3dxy_A TRNA (guanine-N(7)-)-me 99.4 1.1E-11 3.7E-16 90.3 13.5 94 1-99 45-149 (218)
31 3gjy_A Spermidine synthase; AP 99.4 1.9E-12 6.5E-17 99.2 9.3 93 2-100 101-200 (317)
32 2esr_A Methyltransferase; stru 99.4 4.3E-12 1.5E-16 88.8 10.3 93 2-101 43-139 (177)
33 3ajd_A Putative methyltransfer 99.4 2.5E-11 8.5E-16 91.2 14.7 98 2-103 95-214 (274)
34 1sqg_A SUN protein, FMU protei 99.4 1.8E-11 6.1E-16 97.4 14.4 130 2-155 258-426 (429)
35 3orh_A Guanidinoacetate N-meth 99.4 1.3E-12 4.3E-17 96.2 6.9 97 1-105 71-175 (236)
36 3njr_A Precorrin-6Y methylase; 99.4 1.4E-11 4.7E-16 88.7 12.1 89 2-101 67-155 (204)
37 3adn_A Spermidine synthase; am 99.4 2.3E-12 7.9E-17 98.0 8.4 93 2-100 95-198 (294)
38 3hm2_A Precorrin-6Y C5,15-meth 99.3 4E-12 1.4E-16 88.7 8.3 92 2-101 37-128 (178)
39 2fhp_A Methylase, putative; al 99.3 1.9E-11 6.6E-16 85.8 11.8 96 2-101 56-155 (187)
40 1ixk_A Methyltransferase; open 99.3 1.6E-11 5.5E-16 94.0 11.6 94 2-103 130-249 (315)
41 2pt6_A Spermidine synthase; tr 99.3 1.5E-11 5.1E-16 94.5 10.9 93 2-100 128-230 (321)
42 2as0_A Hypothetical protein PH 99.3 5.2E-11 1.8E-15 93.8 14.2 96 2-101 229-336 (396)
43 2yxl_A PH0851 protein, 450AA l 99.3 1.5E-11 5.1E-16 98.5 11.2 96 2-103 271-392 (450)
44 2ift_A Putative methylase HI07 99.3 1E-11 3.5E-16 89.1 9.3 95 2-102 65-165 (201)
45 2frx_A Hypothetical protein YE 99.3 5.8E-11 2E-15 95.8 14.4 95 2-103 129-249 (479)
46 3mti_A RRNA methylase; SAM-dep 99.3 4E-11 1.4E-15 84.4 11.6 89 2-99 34-134 (185)
47 3lpm_A Putative methyltransfer 99.3 1E-11 3.4E-16 92.4 8.8 91 2-98 61-174 (259)
48 3g89_A Ribosomal RNA small sub 99.3 2.4E-11 8E-16 90.2 10.6 92 1-98 91-182 (249)
49 3c0k_A UPF0064 protein YCCW; P 99.3 3.5E-11 1.2E-15 94.8 12.1 96 2-101 232-340 (396)
50 2qfm_A Spermine synthase; sper 99.3 5.4E-11 1.8E-15 92.4 12.8 90 8-101 206-315 (364)
51 2fca_A TRNA (guanine-N(7)-)-me 99.3 3.2E-11 1.1E-15 87.3 10.8 93 1-99 49-152 (213)
52 2frn_A Hypothetical protein PH 99.3 1.6E-11 5.5E-16 92.4 9.5 91 2-102 137-227 (278)
53 2igt_A SAM dependent methyltra 99.3 1.3E-10 4.5E-15 89.6 14.9 95 2-101 165-273 (332)
54 3axs_A Probable N(2),N(2)-dime 99.3 2E-11 6.8E-16 96.1 10.4 91 2-99 64-157 (392)
55 2i7c_A Spermidine synthase; tr 99.3 3.1E-11 1.1E-15 91.1 11.0 93 2-100 90-192 (283)
56 2bm8_A Cephalosporin hydroxyla 99.3 1.7E-12 5.9E-17 95.6 4.0 90 1-101 92-188 (236)
57 2fpo_A Methylase YHHF; structu 99.3 3.1E-11 1.1E-15 86.6 10.2 92 2-101 66-161 (202)
58 2b78_A Hypothetical protein SM 99.3 4.3E-11 1.5E-15 94.0 11.7 86 13-101 234-332 (385)
59 1wxx_A TT1595, hypothetical pr 99.3 3.7E-11 1.3E-15 94.2 11.3 94 2-101 221-326 (382)
60 1yzh_A TRNA (guanine-N(7)-)-me 99.3 2E-11 7E-16 88.1 8.7 92 2-99 53-155 (214)
61 2ozv_A Hypothetical protein AT 99.3 1.8E-11 6.2E-16 91.2 8.6 98 2-99 48-169 (260)
62 3eey_A Putative rRNA methylase 99.3 1E-11 3.5E-16 88.3 6.8 93 2-100 34-139 (197)
63 2b3t_A Protein methyltransfera 99.3 1E-10 3.5E-15 87.7 12.5 90 2-100 121-238 (276)
64 3v97_A Ribosomal RNA large sub 99.3 4.4E-11 1.5E-15 100.5 11.4 94 2-102 551-659 (703)
65 3jwg_A HEN1, methyltransferase 99.2 4E-11 1.4E-15 86.5 9.5 141 2-149 41-194 (219)
66 3jwh_A HEN1; methyltransferase 99.2 2.9E-11 9.9E-16 87.2 8.7 141 2-149 41-194 (217)
67 3ckk_A TRNA (guanine-N(7)-)-me 99.2 2.1E-10 7.1E-15 84.4 13.0 93 2-99 58-167 (235)
68 3mb5_A SAM-dependent methyltra 99.2 1.7E-11 5.9E-16 90.5 7.2 89 2-100 105-194 (255)
69 4gek_A TRNA (CMO5U34)-methyltr 99.2 3.2E-11 1.1E-15 90.1 8.6 91 2-101 82-179 (261)
70 2dul_A N(2),N(2)-dimethylguano 99.2 7.8E-11 2.7E-15 92.4 11.0 90 2-99 59-163 (378)
71 3a27_A TYW2, uncharacterized p 99.2 3.5E-11 1.2E-15 90.3 8.6 90 2-101 131-220 (272)
72 1ws6_A Methyltransferase; stru 99.2 9.8E-11 3.4E-15 81.0 10.3 93 2-101 53-148 (171)
73 3k6r_A Putative transferase PH 99.2 1.9E-11 6.6E-16 92.1 6.9 88 2-99 137-224 (278)
74 1l3i_A Precorrin-6Y methyltran 99.2 1.8E-10 6.2E-15 80.8 11.5 91 2-101 45-135 (192)
75 4dmg_A Putative uncharacterize 99.2 1.3E-10 4.5E-15 91.5 11.8 90 2-101 226-327 (393)
76 3kr9_A SAM-dependent methyltra 99.2 6.8E-11 2.3E-15 86.5 8.6 93 2-101 27-120 (225)
77 3evz_A Methyltransferase; NYSG 99.2 1.6E-10 5.6E-15 83.9 10.5 89 2-99 68-178 (230)
78 4fzv_A Putative methyltransfer 99.2 6.9E-10 2.4E-14 86.4 13.8 94 4-103 162-287 (359)
79 1jsx_A Glucose-inhibited divis 99.2 1.1E-10 3.8E-15 83.4 8.5 88 2-99 77-164 (207)
80 3lec_A NADB-rossmann superfami 99.2 1.2E-10 4.1E-15 85.4 8.5 93 2-101 33-126 (230)
81 1dus_A MJ0882; hypothetical pr 99.2 5.2E-10 1.8E-14 78.5 11.4 90 2-101 64-158 (194)
82 2qm3_A Predicted methyltransfe 99.1 9.4E-11 3.2E-15 91.7 7.8 92 2-99 183-277 (373)
83 3f4k_A Putative methyltransfer 99.1 1.4E-10 4.9E-15 85.4 8.4 94 2-103 58-153 (257)
84 3o4f_A Spermidine synthase; am 99.1 1.3E-10 4.3E-15 88.1 7.9 86 8-99 101-197 (294)
85 4dcm_A Ribosomal RNA large sub 99.1 1E-10 3.5E-15 91.7 7.6 91 1-99 233-333 (375)
86 3hem_A Cyclopropane-fatty-acyl 99.1 3.4E-10 1.2E-14 85.6 10.2 91 2-103 84-186 (302)
87 1o54_A SAM-dependent O-methylt 99.1 9.7E-11 3.3E-15 87.8 6.9 89 2-100 124-213 (277)
88 3bwc_A Spermidine synthase; SA 99.1 2.6E-10 9E-15 86.9 9.4 93 2-99 107-209 (304)
89 2yxd_A Probable cobalt-precorr 99.1 2.5E-09 8.6E-14 74.4 13.8 86 2-101 47-132 (183)
90 1nkv_A Hypothetical protein YJ 99.1 1.7E-10 5.7E-15 85.0 8.0 93 2-103 48-143 (256)
91 1nv8_A HEMK protein; class I a 99.1 3.6E-10 1.2E-14 85.3 10.0 88 2-99 135-248 (284)
92 3ocj_A Putative exported prote 99.1 4.4E-11 1.5E-15 90.8 4.8 93 2-102 130-229 (305)
93 3kkz_A Uncharacterized protein 99.1 1.5E-10 5E-15 86.1 7.4 94 2-103 58-153 (267)
94 2vdv_E TRNA (guanine-N(7)-)-me 99.1 2.6E-10 8.8E-15 84.1 8.7 93 2-99 61-172 (246)
95 2b9e_A NOL1/NOP2/SUN domain fa 99.1 2.2E-09 7.4E-14 82.1 14.0 96 2-103 114-237 (309)
96 3gnl_A Uncharacterized protein 99.1 2.5E-10 8.7E-15 84.4 8.5 92 2-100 33-125 (244)
97 3dlc_A Putative S-adenosyl-L-m 99.1 2.3E-10 7.8E-15 81.9 7.7 93 2-102 55-150 (219)
98 3grz_A L11 mtase, ribosomal pr 99.1 5.9E-10 2E-14 79.6 9.8 89 2-101 72-160 (205)
99 3lbf_A Protein-L-isoaspartate 99.1 2.1E-10 7.3E-15 82.2 7.2 85 2-99 89-173 (210)
100 2nxc_A L11 mtase, ribosomal pr 99.1 2.3E-09 7.8E-14 79.5 12.8 89 2-102 132-220 (254)
101 1zx0_A Guanidinoacetate N-meth 99.1 2.4E-10 8.2E-15 83.6 7.3 93 2-102 72-172 (236)
102 3g07_A 7SK snRNA methylphospha 99.1 2.1E-10 7.3E-15 86.7 7.2 101 2-104 58-224 (292)
103 4htf_A S-adenosylmethionine-de 99.1 3.9E-10 1.3E-14 84.5 8.5 91 2-100 80-173 (285)
104 4dzr_A Protein-(glutamine-N5) 99.1 6.7E-11 2.3E-15 84.5 3.9 93 2-99 42-164 (215)
105 3sso_A Methyltransferase; macr 99.1 2.2E-09 7.4E-14 84.5 12.6 141 2-156 234-392 (419)
106 2cmg_A Spermidine synthase; tr 99.1 5.6E-11 1.9E-15 88.9 3.4 84 2-99 84-170 (262)
107 2qy6_A UPF0209 protein YFCK; s 99.1 8E-10 2.7E-14 82.4 9.5 96 1-98 71-211 (257)
108 3tos_A CALS11; methyltransfera 99.1 3E-09 1E-13 79.1 12.4 100 36-153 152-253 (257)
109 3mgg_A Methyltransferase; NYSG 99.1 5.4E-10 1.9E-14 83.2 8.4 94 2-103 49-145 (276)
110 3c6k_A Spermine synthase; sper 99.1 2.3E-09 7.9E-14 83.6 12.1 132 5-156 219-378 (381)
111 2pwy_A TRNA (adenine-N(1)-)-me 99.0 4.4E-10 1.5E-14 82.8 7.5 89 2-100 108-198 (258)
112 1yb2_A Hypothetical protein TA 99.0 3.4E-10 1.2E-14 84.8 6.5 88 2-100 122-211 (275)
113 2yx1_A Hypothetical protein MJ 99.0 1.3E-09 4.5E-14 84.1 9.6 81 11-102 213-293 (336)
114 2yvl_A TRMI protein, hypotheti 99.0 7E-10 2.4E-14 81.3 7.3 88 2-100 103-190 (248)
115 2b25_A Hypothetical protein; s 99.0 6.3E-10 2.2E-14 85.6 7.3 90 2-98 117-217 (336)
116 2fk8_A Methoxy mycolic acid sy 99.0 1.8E-09 6E-14 82.2 9.7 91 2-103 102-197 (318)
117 2pbf_A Protein-L-isoaspartate 99.0 8.5E-10 2.9E-14 80.0 7.3 92 2-99 92-192 (227)
118 3gdh_A Trimethylguanosine synt 99.0 1E-10 3.6E-15 85.6 2.1 89 2-100 90-181 (241)
119 1g8a_A Fibrillarin-like PRE-rR 99.0 1.3E-09 4.4E-14 79.1 7.9 91 2-99 85-177 (227)
120 3tma_A Methyltransferase; thum 99.0 1.8E-09 6.2E-14 83.7 9.1 84 8-99 221-316 (354)
121 3bus_A REBM, methyltransferase 99.0 1.5E-09 5E-14 80.7 8.3 94 2-103 73-169 (273)
122 1kpg_A CFA synthase;, cyclopro 99.0 3.3E-09 1.1E-13 79.4 10.0 90 2-102 76-170 (287)
123 3gu3_A Methyltransferase; alph 99.0 1.2E-09 4.2E-14 82.0 7.4 91 2-102 34-128 (284)
124 3dh0_A SAM dependent methyltra 99.0 1.6E-09 5.4E-14 77.9 7.6 93 2-102 49-145 (219)
125 1fbn_A MJ fibrillarin homologu 99.0 1.3E-09 4.4E-14 79.5 7.2 91 2-99 86-177 (230)
126 3dtn_A Putative methyltransfer 99.0 7.5E-10 2.6E-14 80.5 5.9 90 2-102 56-150 (234)
127 3g5t_A Trans-aconitate 3-methy 99.0 2.3E-09 8E-14 80.9 8.7 95 2-98 48-147 (299)
128 3m70_A Tellurite resistance pr 99.0 6.4E-09 2.2E-13 77.9 10.7 86 2-99 132-222 (286)
129 3id6_C Fibrillarin-like rRNA/T 98.9 9.6E-09 3.3E-13 75.4 11.2 92 1-99 87-180 (232)
130 2yxe_A Protein-L-isoaspartate 98.9 1.6E-09 5.4E-14 77.8 6.9 87 2-99 89-176 (215)
131 3bt7_A TRNA (uracil-5-)-methyl 98.9 3.5E-09 1.2E-13 82.6 9.1 94 2-101 225-327 (369)
132 3lcc_A Putative methyl chlorid 98.9 5.3E-09 1.8E-13 76.1 9.5 81 13-101 87-172 (235)
133 3vc1_A Geranyl diphosphate 2-C 98.9 1.7E-09 5.8E-14 82.3 6.8 92 2-101 129-222 (312)
134 1i9g_A Hypothetical protein RV 98.9 3.1E-09 1E-13 79.3 8.0 90 2-100 111-203 (280)
135 1nt2_A Fibrillarin-like PRE-rR 98.9 4.5E-09 1.5E-13 75.9 8.4 92 1-99 68-160 (210)
136 2o57_A Putative sarcosine dime 98.9 2.1E-09 7.2E-14 80.9 6.9 93 2-102 94-189 (297)
137 1i1n_A Protein-L-isoaspartate 98.9 3.4E-09 1.2E-13 76.7 7.7 89 2-100 89-182 (226)
138 1o9g_A RRNA methyltransferase; 98.9 4E-10 1.4E-14 83.1 2.8 93 2-98 63-212 (250)
139 2h00_A Methyltransferase 10 do 98.9 4.4E-10 1.5E-14 83.0 3.0 72 2-75 77-149 (254)
140 3r0q_C Probable protein argini 98.9 3E-09 1E-13 83.2 7.7 91 2-102 75-171 (376)
141 1dl5_A Protein-L-isoaspartate 98.9 2.5E-09 8.6E-14 81.7 7.0 87 2-99 87-174 (317)
142 1vl5_A Unknown conserved prote 98.9 3.3E-09 1.1E-13 78.4 7.3 89 2-100 49-140 (260)
143 3dmg_A Probable ribosomal RNA 98.9 4E-09 1.4E-13 82.8 8.2 87 2-99 245-339 (381)
144 3fzg_A 16S rRNA methylase; met 98.9 5.3E-08 1.8E-12 69.4 13.1 83 8-100 67-152 (200)
145 1jg1_A PIMT;, protein-L-isoasp 98.9 2.6E-09 8.8E-14 78.1 6.5 86 2-99 103-188 (235)
146 3q7e_A Protein arginine N-meth 98.9 4.8E-09 1.6E-13 81.3 8.2 90 2-100 78-173 (349)
147 2xvm_A Tellurite resistance pr 98.9 8.1E-09 2.8E-13 72.8 8.5 87 2-99 44-135 (199)
148 3dp7_A SAM-dependent methyltra 98.9 4.7E-09 1.6E-13 81.6 7.7 94 2-103 191-290 (363)
149 4fsd_A Arsenic methyltransfera 98.9 3E-09 1E-13 83.3 6.6 96 2-102 95-205 (383)
150 2ipx_A RRNA 2'-O-methyltransfe 98.9 7.1E-09 2.4E-13 75.5 8.1 89 2-99 89-181 (233)
151 3i53_A O-methyltransferase; CO 98.9 5.8E-09 2E-13 79.9 7.8 92 2-103 181-277 (332)
152 3htx_A HEN1; HEN1, small RNA m 98.9 1.4E-08 4.8E-13 86.0 10.4 138 2-149 733-900 (950)
153 1u2z_A Histone-lysine N-methyl 98.9 1.1E-08 3.9E-13 81.4 9.4 96 2-103 254-362 (433)
154 3mcz_A O-methyltransferase; ad 98.8 1E-08 3.5E-13 79.0 8.7 95 2-103 191-290 (352)
155 2pjd_A Ribosomal RNA small sub 98.8 8.2E-09 2.8E-13 79.7 8.1 87 2-99 208-302 (343)
156 1r18_A Protein-L-isoaspartate( 98.8 2.1E-09 7.1E-14 78.1 4.3 88 2-99 96-193 (227)
157 3uwp_A Histone-lysine N-methyl 98.8 2E-08 6.9E-13 79.3 10.1 93 5-102 188-290 (438)
158 3gwz_A MMCR; methyltransferase 98.8 1.1E-08 3.7E-13 79.8 8.5 92 2-103 214-310 (369)
159 1xxl_A YCGJ protein; structura 98.8 8.6E-09 2.9E-13 75.4 7.5 90 2-101 33-125 (239)
160 1ve3_A Hypothetical protein PH 98.8 5.4E-09 1.8E-13 75.4 6.3 89 2-101 50-143 (227)
161 2fyt_A Protein arginine N-meth 98.8 8.2E-09 2.8E-13 79.7 7.7 89 2-99 76-170 (340)
162 4df3_A Fibrillarin-like rRNA/T 98.8 8.8E-09 3E-13 75.7 7.4 91 2-99 89-181 (233)
163 1wzn_A SAM-dependent methyltra 98.8 1.6E-08 5.5E-13 74.1 8.5 87 2-100 53-145 (252)
164 1ri5_A MRNA capping enzyme; me 98.8 1.1E-08 3.7E-13 76.7 7.4 92 2-100 76-174 (298)
165 2ex4_A Adrenal gland protein A 98.8 5.2E-09 1.8E-13 76.5 5.4 87 5-100 94-185 (241)
166 2p35_A Trans-aconitate 2-methy 98.8 5.9E-09 2E-13 76.7 5.7 85 2-100 45-132 (259)
167 2y1w_A Histone-arginine methyl 98.8 1.4E-08 4.9E-13 78.6 8.1 80 11-99 70-154 (348)
168 3g2m_A PCZA361.24; SAM-depende 98.8 3.5E-09 1.2E-13 79.9 4.5 91 2-102 94-192 (299)
169 4hc4_A Protein arginine N-meth 98.8 1.2E-08 3.9E-13 80.0 7.4 85 8-101 100-190 (376)
170 1g6q_1 HnRNP arginine N-methyl 98.8 1.6E-08 5.3E-13 77.7 8.0 89 2-99 50-144 (328)
171 1pjz_A Thiopurine S-methyltran 98.8 4.8E-09 1.6E-13 75.2 4.7 88 2-97 34-137 (203)
172 3d2l_A SAM-dependent methyltra 98.8 1.1E-08 3.9E-13 74.3 6.7 75 15-99 55-136 (243)
173 1vbf_A 231AA long hypothetical 98.8 1.2E-08 4E-13 74.0 6.5 84 2-100 82-165 (231)
174 3ofk_A Nodulation protein S; N 98.8 6.2E-09 2.1E-13 74.7 4.9 86 2-100 63-154 (216)
175 1qzz_A RDMB, aclacinomycin-10- 98.8 1.9E-08 6.6E-13 78.1 8.0 90 2-101 194-288 (374)
176 1y8c_A S-adenosylmethionine-de 98.8 1.9E-08 6.6E-13 73.1 7.5 86 2-99 49-141 (246)
177 1uwv_A 23S rRNA (uracil-5-)-me 98.8 3E-08 1E-12 79.0 9.0 91 2-99 298-388 (433)
178 2ip2_A Probable phenazine-spec 98.8 9.5E-09 3.2E-13 78.7 5.9 92 2-103 179-275 (334)
179 3b3j_A Histone-arginine methyl 98.8 1.1E-08 3.9E-13 82.4 6.5 80 11-99 178-262 (480)
180 2r3s_A Uncharacterized protein 98.8 3E-08 1E-12 75.8 8.5 92 2-102 177-273 (335)
181 2qe6_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 71.9 10.8 97 2-102 92-198 (274)
182 1tw3_A COMT, carminomycin 4-O- 98.8 2.7E-08 9.2E-13 76.9 8.2 91 2-102 195-290 (360)
183 2yqz_A Hypothetical protein TT 98.7 2.1E-08 7.1E-13 73.8 7.1 87 2-99 51-140 (263)
184 2p8j_A S-adenosylmethionine-de 98.7 1.8E-08 6E-13 71.8 6.5 90 2-101 35-129 (209)
185 2gb4_A Thiopurine S-methyltran 98.7 2.2E-08 7.7E-13 74.3 7.3 89 2-98 80-189 (252)
186 2jjq_A Uncharacterized RNA met 98.7 2E-08 6.8E-13 79.9 7.4 84 2-99 302-386 (425)
187 2p7i_A Hypothetical protein; p 98.7 1.1E-08 3.7E-13 74.4 5.4 85 2-101 54-142 (250)
188 2kw5_A SLR1183 protein; struct 98.7 2.8E-08 9.7E-13 70.5 7.5 90 2-102 41-133 (202)
189 3p2e_A 16S rRNA methylase; met 98.7 8.7E-09 3E-13 75.2 4.8 90 2-98 36-137 (225)
190 3sm3_A SAM-dependent methyltra 98.7 1.2E-08 4E-13 73.8 5.4 91 2-101 42-142 (235)
191 3tm4_A TRNA (guanine N2-)-meth 98.7 2.7E-08 9.2E-13 77.7 7.7 76 8-90 235-321 (373)
192 1x19_A CRTF-related protein; m 98.7 7.6E-08 2.6E-12 74.5 10.1 90 2-101 202-296 (359)
193 3g5l_A Putative S-adenosylmeth 98.7 2.1E-08 7.1E-13 73.7 6.5 86 2-99 56-144 (253)
194 3ujc_A Phosphoethanolamine N-m 98.7 9.8E-09 3.3E-13 75.6 4.5 90 2-102 67-161 (266)
195 3dli_A Methyltransferase; PSI- 98.7 3.4E-08 1.2E-12 72.1 7.0 84 2-101 53-141 (240)
196 3h2b_A SAM-dependent methyltra 98.7 5.1E-08 1.7E-12 69.2 7.5 85 2-101 53-142 (203)
197 3thr_A Glycine N-methyltransfe 98.7 9.9E-08 3.4E-12 71.5 9.3 93 2-100 69-175 (293)
198 3ou2_A SAM-dependent methyltra 98.7 3.6E-08 1.2E-12 70.4 6.5 85 2-101 58-147 (218)
199 2vdw_A Vaccinia virus capping 98.7 1.4E-07 4.9E-12 71.7 9.8 85 13-101 70-170 (302)
200 3m33_A Uncharacterized protein 98.7 1.1E-08 3.6E-13 74.3 3.3 79 2-97 60-139 (226)
201 3ccf_A Cyclopropane-fatty-acyl 98.7 2.9E-08 9.8E-13 74.1 5.7 84 2-101 69-155 (279)
202 3bkx_A SAM-dependent methyltra 98.7 4.7E-08 1.6E-12 72.5 6.8 95 2-102 55-161 (275)
203 3hnr_A Probable methyltransfer 98.7 1.9E-08 6.5E-13 72.3 4.3 86 2-102 57-147 (220)
204 4hg2_A Methyltransferase type 98.6 1.4E-08 4.6E-13 75.7 3.5 83 1-99 50-134 (257)
205 1xtp_A LMAJ004091AAA; SGPP, st 98.6 4.5E-08 1.5E-12 71.7 5.6 89 2-101 105-198 (254)
206 3bzb_A Uncharacterized protein 98.6 4.2E-07 1.4E-11 68.2 10.9 91 2-98 91-203 (281)
207 3bgv_A MRNA CAP guanine-N7 met 98.6 1.5E-07 5E-12 71.5 8.5 96 2-101 46-156 (313)
208 3e8s_A Putative SAM dependent 98.6 1.5E-07 5E-12 67.5 8.0 88 2-101 64-153 (227)
209 2pxx_A Uncharacterized protein 98.6 3.3E-08 1.1E-12 70.4 4.5 88 2-100 54-159 (215)
210 2i62_A Nicotinamide N-methyltr 98.6 1.4E-08 4.7E-13 74.9 2.6 96 2-101 68-199 (265)
211 3mq2_A 16S rRNA methyltransfer 98.6 2.8E-08 9.6E-13 71.5 3.9 89 2-99 39-139 (218)
212 3i9f_A Putative type 11 methyl 98.6 1.8E-07 6.2E-12 64.5 7.8 84 2-103 29-115 (170)
213 3ll7_A Putative methyltransfer 98.6 7.9E-08 2.7E-12 76.0 6.6 66 2-75 105-172 (410)
214 3e23_A Uncharacterized protein 98.6 6.9E-08 2.4E-12 69.0 5.5 83 2-101 55-142 (211)
215 2r6z_A UPF0341 protein in RSP 98.6 6.2E-08 2.1E-12 72.1 5.2 67 2-75 95-170 (258)
216 1wy7_A Hypothetical protein PH 98.5 4.1E-07 1.4E-11 64.7 8.9 83 2-99 61-148 (207)
217 3l8d_A Methyltransferase; stru 98.5 9.7E-08 3.3E-12 69.4 5.6 86 2-100 65-153 (242)
218 3pfg_A N-methyltransferase; N, 98.5 6.2E-08 2.1E-12 71.5 4.6 73 14-100 72-151 (263)
219 2aot_A HMT, histamine N-methyl 98.5 8.1E-07 2.8E-11 66.7 10.7 88 10-99 76-171 (292)
220 2oyr_A UPF0341 protein YHIQ; a 98.5 4.4E-08 1.5E-12 73.0 3.1 67 2-76 100-174 (258)
221 3bkw_A MLL3908 protein, S-aden 98.5 1.4E-07 4.8E-12 68.5 5.7 87 2-100 55-144 (243)
222 3ggd_A SAM-dependent methyltra 98.5 2.3E-07 8E-12 67.7 6.8 89 2-100 68-163 (245)
223 2g72_A Phenylethanolamine N-me 98.5 7.6E-08 2.6E-12 72.2 3.9 98 2-101 83-216 (289)
224 3bxo_A N,N-dimethyltransferase 98.5 1.8E-07 6.3E-12 67.7 5.6 84 2-101 52-142 (239)
225 3giw_A Protein of unknown func 98.5 3.8E-07 1.3E-11 68.4 7.4 95 6-102 96-202 (277)
226 3cgg_A SAM-dependent methyltra 98.5 2.9E-07 9.9E-12 64.3 6.0 84 2-100 58-147 (195)
227 1ne2_A Hypothetical protein TA 98.5 6.3E-07 2.2E-11 63.5 7.8 79 2-99 63-146 (200)
228 1ej0_A FTSJ; methyltransferase 98.4 3E-07 1E-11 63.1 5.8 83 2-100 34-136 (180)
229 1p91_A Ribosomal RNA large sub 98.4 3.1E-07 1E-11 68.0 6.0 82 2-100 97-178 (269)
230 2f8l_A Hypothetical protein LM 98.4 3.1E-07 1E-11 70.8 6.2 75 15-99 160-255 (344)
231 3k0b_A Predicted N6-adenine-sp 98.4 3.4E-07 1.2E-11 72.1 6.3 76 15-98 264-348 (393)
232 2oo3_A Protein involved in cat 98.4 7.4E-07 2.5E-11 66.9 7.6 80 13-98 112-196 (283)
233 3ldg_A Putative uncharacterize 98.4 6E-07 2.1E-11 70.5 7.1 76 15-98 257-341 (384)
234 2gs9_A Hypothetical protein TT 98.4 2.2E-07 7.4E-12 66.3 4.2 75 14-101 55-133 (211)
235 1m6y_A S-adenosyl-methyltransf 98.4 1.1E-06 3.7E-11 66.9 8.3 72 2-77 38-109 (301)
236 2a14_A Indolethylamine N-methy 98.4 1.4E-07 4.7E-12 70.1 2.9 85 15-102 79-199 (263)
237 3ldu_A Putative methylase; str 98.3 6.1E-07 2.1E-11 70.4 6.0 76 15-98 258-342 (385)
238 4a6d_A Hydroxyindole O-methylt 98.3 1.5E-06 5.1E-11 67.3 8.1 90 2-102 191-285 (353)
239 3q87_B N6 adenine specific DNA 98.3 5.3E-07 1.8E-11 62.6 4.3 66 16-100 46-123 (170)
240 3ege_A Putative methyltransfer 98.3 1.7E-07 5.9E-12 69.3 1.8 82 2-100 46-130 (261)
241 3iv6_A Putative Zn-dependent a 98.3 1.1E-06 3.7E-11 65.6 5.9 86 2-99 57-147 (261)
242 1zq9_A Probable dimethyladenos 98.3 3E-06 1E-10 63.8 8.2 66 1-77 39-104 (285)
243 3cc8_A Putative methyltransfer 98.3 4.9E-07 1.7E-11 64.8 3.5 84 2-100 44-130 (230)
244 1af7_A Chemotaxis receptor met 98.2 6.7E-07 2.3E-11 67.2 4.0 81 14-100 137-252 (274)
245 2plw_A Ribosomal RNA methyltra 98.2 4.1E-06 1.4E-10 59.1 7.6 82 2-100 34-154 (201)
246 3lst_A CALO1 methyltransferase 98.2 5.5E-07 1.9E-11 69.4 3.3 89 2-103 196-289 (348)
247 2avn_A Ubiquinone/menaquinone 98.2 2E-06 6.7E-11 63.5 5.6 83 2-100 66-152 (260)
248 2h1r_A Dimethyladenosine trans 98.2 3.2E-06 1.1E-10 64.1 6.8 64 2-77 54-117 (299)
249 4gqb_A Protein arginine N-meth 98.2 2.2E-06 7.7E-11 71.0 6.1 77 14-99 385-466 (637)
250 3lcv_B Sisomicin-gentamicin re 98.2 6.2E-06 2.1E-10 61.5 7.6 82 9-101 151-237 (281)
251 4e2x_A TCAB9; kijanose, tetron 98.2 2.4E-06 8.4E-11 67.2 5.6 87 2-100 119-208 (416)
252 3dou_A Ribosomal RNA large sub 98.2 5.4E-06 1.8E-10 58.8 6.8 84 2-100 37-139 (191)
253 1vlm_A SAM-dependent methyltra 98.1 3.4E-06 1.2E-10 60.5 4.5 69 18-101 69-140 (219)
254 2xyq_A Putative 2'-O-methyl tr 98.1 4.8E-06 1.6E-10 63.0 5.5 73 6-100 83-171 (290)
255 3hp7_A Hemolysin, putative; st 98.1 5.5E-07 1.9E-11 68.2 0.2 85 2-98 97-183 (291)
256 2okc_A Type I restriction enzy 98.0 3.2E-06 1.1E-10 67.4 4.2 78 13-98 207-305 (445)
257 2ld4_A Anamorsin; methyltransf 98.0 1.7E-06 5.8E-11 60.0 2.2 73 19-101 25-102 (176)
258 2nyu_A Putative ribosomal RNA 98.0 1.3E-05 4.5E-10 56.1 6.7 83 2-100 34-145 (196)
259 3v97_A Ribosomal RNA large sub 98.0 8.2E-06 2.8E-10 68.6 5.7 81 13-98 255-345 (703)
260 3reo_A (ISO)eugenol O-methyltr 98.0 3.7E-06 1.3E-10 65.4 3.2 84 2-103 215-303 (368)
261 3opn_A Putative hemolysin; str 97.9 1.2E-06 4.2E-11 64.1 0.1 85 2-98 49-135 (232)
262 3p9c_A Caffeic acid O-methyltr 97.9 7E-06 2.4E-10 63.7 4.2 84 2-103 213-301 (364)
263 3frh_A 16S rRNA methylase; met 97.9 0.00015 5.2E-09 53.4 10.7 87 2-100 115-206 (253)
264 2ih2_A Modification methylase 97.9 5.6E-06 1.9E-10 65.0 3.1 69 13-99 63-163 (421)
265 1fp1_D Isoliquiritigenin 2'-O- 97.9 9E-06 3.1E-10 63.1 3.7 83 2-102 221-308 (372)
266 1fp2_A Isoflavone O-methyltran 97.8 1.2E-05 4.2E-10 61.9 4.0 83 2-102 200-290 (352)
267 2ar0_A M.ecoki, type I restric 97.8 4.2E-05 1.4E-09 62.5 7.3 78 15-98 212-310 (541)
268 3ua3_A Protein arginine N-meth 97.8 3.3E-05 1.1E-09 64.6 6.3 83 14-99 446-533 (745)
269 3gru_A Dimethyladenosine trans 97.8 8.2E-05 2.8E-09 56.3 7.6 64 1-76 61-124 (295)
270 4azs_A Methyltransferase WBDD; 97.7 8.6E-05 2.9E-09 60.9 8.0 65 2-74 78-142 (569)
271 1zg3_A Isoflavanone 4'-O-methy 97.5 7.4E-05 2.5E-09 57.6 4.6 83 2-102 205-295 (358)
272 2wa2_A Non-structural protein 97.5 8.9E-06 3.1E-10 61.0 -1.0 85 2-99 94-192 (276)
273 3tqs_A Ribosomal RNA small sub 97.5 0.00026 8.8E-09 52.4 6.8 65 1-75 40-105 (255)
274 3pvc_A TRNA 5-methylaminomethy 97.5 5.2E-05 1.8E-09 63.4 3.1 83 15-99 95-210 (689)
275 1wg8_A Predicted S-adenosylmet 97.5 0.00032 1.1E-08 52.7 7.0 65 5-78 37-101 (285)
276 3khk_A Type I restriction-modi 97.4 7.3E-05 2.5E-09 61.1 3.5 79 14-98 283-393 (544)
277 2p41_A Type II methyltransfera 97.4 2.6E-05 8.9E-10 59.3 0.6 83 2-99 94-190 (305)
278 3lkd_A Type I restriction-modi 97.4 0.0005 1.7E-08 56.2 7.6 81 13-98 247-356 (542)
279 1g60_A Adenine-specific methyl 97.4 0.00021 7.3E-09 52.8 5.0 53 42-99 4-73 (260)
280 2oxt_A Nucleoside-2'-O-methylt 97.4 1E-05 3.5E-10 60.3 -2.2 86 2-100 86-185 (265)
281 1boo_A Protein (N-4 cytosine-s 97.3 0.00032 1.1E-08 53.6 5.3 54 41-99 13-83 (323)
282 2zfu_A Nucleomethylin, cerebra 97.3 9.7E-05 3.3E-09 52.5 2.1 64 15-101 87-152 (215)
283 1eg2_A Modification methylase 97.2 0.00061 2.1E-08 52.0 6.1 53 42-99 38-105 (319)
284 3vyw_A MNMC2; tRNA wobble urid 97.2 0.0023 7.8E-08 48.6 8.7 51 43-98 168-224 (308)
285 2zig_A TTHA0409, putative modi 97.1 0.00065 2.2E-08 51.2 5.3 54 41-99 20-96 (297)
286 3fut_A Dimethyladenosine trans 97.1 0.001 3.4E-08 49.7 6.2 85 2-98 58-143 (271)
287 1qam_A ERMC' methyltransferase 97.1 0.0013 4.6E-08 48.0 6.8 47 2-53 42-88 (244)
288 3s1s_A Restriction endonucleas 96.9 0.0016 5.3E-08 55.6 6.3 79 14-98 348-463 (878)
289 3tka_A Ribosomal RNA small sub 96.9 0.0016 5.6E-08 50.0 5.9 67 5-77 72-139 (347)
290 1yub_A Ermam, rRNA methyltrans 96.9 6E-05 2E-09 55.2 -2.4 85 2-98 41-143 (245)
291 3uzu_A Ribosomal RNA small sub 96.6 0.0066 2.3E-07 45.4 6.9 48 1-53 53-102 (279)
292 3s2e_A Zinc-containing alcohol 96.5 0.0078 2.7E-07 45.8 7.2 86 1-100 178-263 (340)
293 4eez_A Alcohol dehydrogenase 1 96.5 0.022 7.5E-07 43.3 9.5 87 3-100 177-263 (348)
294 3ftd_A Dimethyladenosine trans 96.4 0.0062 2.1E-07 44.7 5.9 82 4-98 45-129 (249)
295 1f8f_A Benzyl alcohol dehydrog 96.4 0.0087 3E-07 46.1 6.9 87 2-100 203-289 (371)
296 4dvj_A Putative zinc-dependent 96.4 0.0094 3.2E-07 45.9 7.0 85 2-99 185-269 (363)
297 4ej6_A Putative zinc-binding d 96.3 0.0056 1.9E-07 47.3 5.4 90 2-100 195-284 (370)
298 1pqw_A Polyketide synthase; ro 96.3 0.0091 3.1E-07 41.7 5.9 85 2-99 52-136 (198)
299 3jv7_A ADH-A; dehydrogenase, n 96.3 0.011 3.9E-07 45.0 6.8 88 2-101 184-271 (345)
300 1qyr_A KSGA, high level kasuga 96.2 0.013 4.5E-07 43.1 6.6 68 1-76 32-100 (252)
301 1pl8_A Human sorbitol dehydrog 96.2 0.02 6.9E-07 43.8 7.8 87 2-100 184-273 (356)
302 4a2c_A Galactitol-1-phosphate 96.1 0.028 9.5E-07 42.7 8.5 89 2-101 173-261 (346)
303 3fpc_A NADP-dependent alcohol 96.1 0.009 3.1E-07 45.7 5.6 88 2-100 179-266 (352)
304 2c0c_A Zinc binding alcohol de 96.1 0.019 6.7E-07 44.1 7.5 84 2-99 177-260 (362)
305 3ps9_A TRNA 5-methylaminomethy 96.1 0.028 9.7E-07 46.8 9.0 56 42-99 157-218 (676)
306 3qwb_A Probable quinone oxidor 96.1 0.011 3.6E-07 44.9 5.8 86 2-100 162-247 (334)
307 4dup_A Quinone oxidoreductase; 96.0 0.015 5E-07 44.6 6.5 85 2-100 181-265 (353)
308 3uko_A Alcohol dehydrogenase c 96.0 0.013 4.4E-07 45.3 6.0 88 2-101 206-296 (378)
309 1e3i_A Alcohol dehydrogenase, 96.0 0.026 9E-07 43.5 7.7 87 2-100 208-297 (376)
310 1cdo_A Alcohol dehydrogenase; 95.9 0.03 1E-06 43.1 7.7 87 2-100 205-294 (374)
311 3jyn_A Quinone oxidoreductase; 95.9 0.012 4.3E-07 44.4 5.3 86 2-100 154-239 (325)
312 1wly_A CAAR, 2-haloacrylate re 95.8 0.024 8.2E-07 42.9 6.8 85 2-99 159-243 (333)
313 1v3u_A Leukotriene B4 12- hydr 95.7 0.029 9.7E-07 42.5 6.9 84 2-99 159-243 (333)
314 1vj0_A Alcohol dehydrogenase, 95.7 0.014 4.9E-07 45.2 5.2 85 2-100 208-298 (380)
315 1jvb_A NAD(H)-dependent alcoho 95.7 0.016 5.6E-07 44.1 5.5 86 2-99 184-270 (347)
316 1p0f_A NADP-dependent alcohol 95.7 0.028 9.4E-07 43.3 6.8 87 2-100 204-293 (373)
317 3fbg_A Putative arginate lyase 95.7 0.034 1.2E-06 42.4 7.2 83 2-98 164-246 (346)
318 4eye_A Probable oxidoreductase 95.7 0.028 9.6E-07 42.8 6.6 85 2-100 173-257 (342)
319 1kol_A Formaldehyde dehydrogen 95.6 0.037 1.2E-06 43.0 7.3 90 2-100 198-300 (398)
320 2dph_A Formaldehyde dismutase; 95.6 0.016 5.3E-07 45.2 5.2 89 2-99 198-298 (398)
321 3gms_A Putative NADPH:quinone 95.6 0.022 7.4E-07 43.4 5.9 86 2-100 158-243 (340)
322 2jhf_A Alcohol dehydrogenase E 95.6 0.037 1.3E-06 42.6 7.3 87 2-100 204-293 (374)
323 3ip1_A Alcohol dehydrogenase, 95.6 0.033 1.1E-06 43.5 6.9 89 2-100 226-318 (404)
324 2hcy_A Alcohol dehydrogenase 1 95.6 0.045 1.5E-06 41.7 7.5 86 2-100 183-269 (347)
325 2fzw_A Alcohol dehydrogenase c 95.5 0.04 1.4E-06 42.4 6.9 87 2-100 203-292 (373)
326 4b7c_A Probable oxidoreductase 95.4 0.046 1.6E-06 41.4 7.1 85 2-99 163-247 (336)
327 1rjw_A ADH-HT, alcohol dehydro 95.4 0.037 1.3E-06 42.0 6.5 84 2-99 177-260 (339)
328 3uog_A Alcohol dehydrogenase; 95.4 0.02 6.8E-07 44.0 4.9 86 2-101 202-288 (363)
329 2h6e_A ADH-4, D-arabinose 1-de 95.3 0.024 8.1E-07 43.2 5.1 85 2-100 183-269 (344)
330 1qor_A Quinone oxidoreductase; 95.3 0.025 8.4E-07 42.7 5.1 85 2-99 154-238 (327)
331 2d8a_A PH0655, probable L-thre 95.3 0.028 9.7E-07 42.8 5.5 86 2-99 180-266 (348)
332 3pi7_A NADH oxidoreductase; gr 95.3 0.031 1.1E-06 42.6 5.7 86 2-100 178-263 (349)
333 1e3j_A NADP(H)-dependent ketos 95.3 0.06 2E-06 41.1 7.3 89 2-99 181-270 (352)
334 2zb4_A Prostaglandin reductase 95.2 0.064 2.2E-06 40.9 7.3 85 2-99 174-259 (357)
335 2eih_A Alcohol dehydrogenase; 95.1 0.038 1.3E-06 42.0 5.6 85 2-99 180-264 (343)
336 3m6i_A L-arabinitol 4-dehydrog 95.0 0.093 3.2E-06 40.1 7.6 86 2-100 192-283 (363)
337 3eod_A Protein HNR; response r 94.8 0.42 1.4E-05 30.1 11.0 70 12-89 5-76 (130)
338 2zig_A TTHA0409, putative modi 94.8 0.062 2.1E-06 40.2 6.0 49 1-50 244-292 (297)
339 3cg0_A Response regulator rece 94.8 0.42 1.4E-05 30.4 9.5 78 13-98 8-88 (140)
340 3gaz_A Alcohol dehydrogenase s 94.7 0.083 2.8E-06 40.2 6.7 82 2-99 164-245 (343)
341 2j8z_A Quinone oxidoreductase; 94.7 0.079 2.7E-06 40.5 6.5 86 2-100 176-261 (354)
342 2j3h_A NADP-dependent oxidored 94.6 0.12 4.1E-06 39.1 7.3 85 2-99 169-254 (345)
343 2qr3_A Two-component system re 94.5 0.51 1.8E-05 30.0 9.9 77 14-98 3-86 (140)
344 2rjn_A Response regulator rece 94.5 0.57 2E-05 30.5 10.9 70 12-89 5-76 (154)
345 1yb5_A Quinone oxidoreductase; 94.5 0.087 3E-06 40.3 6.4 85 2-99 184-268 (351)
346 3eul_A Possible nitrate/nitrit 94.5 0.5 1.7E-05 30.7 9.5 78 12-96 13-92 (152)
347 1uuf_A YAHK, zinc-type alcohol 94.4 0.16 5.4E-06 39.1 7.7 81 2-99 207-287 (369)
348 2b5w_A Glucose dehydrogenase; 94.3 0.069 2.4E-06 40.8 5.4 83 2-100 185-273 (357)
349 3hzh_A Chemotaxis response reg 94.3 0.68 2.3E-05 30.4 9.8 77 15-98 37-117 (157)
350 3lua_A Response regulator rece 94.2 0.64 2.2E-05 29.7 9.6 77 14-98 4-87 (140)
351 3to5_A CHEY homolog; alpha(5)b 94.2 0.19 6.6E-06 33.1 6.7 68 13-87 11-80 (134)
352 2gkg_A Response regulator homo 94.1 0.59 2E-05 28.9 9.0 76 15-98 6-86 (127)
353 3r24_A NSP16, 2'-O-methyl tran 94.1 0.097 3.3E-06 39.6 5.6 68 11-99 134-216 (344)
354 3hv2_A Response regulator/HD d 94.0 0.75 2.6E-05 29.9 9.6 78 13-98 13-92 (153)
355 2b4a_A BH3024; flavodoxin-like 93.9 0.71 2.4E-05 29.3 10.1 69 12-88 13-84 (138)
356 3gqv_A Enoyl reductase; medium 93.9 0.24 8.1E-06 38.1 7.7 85 2-100 178-263 (371)
357 3ufb_A Type I restriction-modi 93.8 0.1 3.5E-06 42.4 5.7 80 14-98 254-360 (530)
358 3f6c_A Positive transcription 93.8 0.57 1.9E-05 29.5 8.4 74 15-96 2-77 (134)
359 2py6_A Methyltransferase FKBM; 93.7 0.14 4.9E-06 40.1 6.3 47 1-47 237-288 (409)
360 1xa0_A Putative NADPH dependen 93.6 0.082 2.8E-06 39.8 4.6 84 2-100 163-246 (328)
361 3grc_A Sensor protein, kinase; 93.4 0.9 3.1E-05 28.9 10.7 68 13-88 5-74 (140)
362 2dq4_A L-threonine 3-dehydroge 93.4 0.056 1.9E-06 41.1 3.4 83 2-99 177-261 (343)
363 3kto_A Response regulator rece 93.4 0.55 1.9E-05 29.9 7.9 68 14-89 6-77 (136)
364 3rqi_A Response regulator prot 93.4 1.2 4E-05 30.1 10.8 69 13-89 6-76 (184)
365 2zay_A Response regulator rece 93.4 0.7 2.4E-05 29.7 8.5 68 13-88 7-76 (147)
366 3lte_A Response regulator; str 93.4 0.88 3E-05 28.5 10.2 69 13-89 5-75 (132)
367 3gl9_A Response regulator; bet 93.3 0.68 2.3E-05 28.9 8.1 65 15-87 3-69 (122)
368 3f6p_A Transcriptional regulat 93.2 0.89 3E-05 28.2 8.8 66 15-88 3-70 (120)
369 3kht_A Response regulator; PSI 93.2 1 3.5E-05 28.8 11.2 70 13-88 4-75 (144)
370 1qkk_A DCTD, C4-dicarboxylate 93.1 1.1 3.8E-05 29.0 9.7 77 14-98 3-81 (155)
371 3krt_A Crotonyl COA reductase; 93.1 0.18 6.2E-06 39.9 6.0 85 2-99 242-343 (456)
372 4a0s_A Octenoyl-COA reductase/ 93.1 0.22 7.7E-06 39.2 6.5 85 2-100 234-336 (447)
373 3cz5_A Two-component response 93.1 1.1 3.8E-05 29.0 10.0 78 14-98 5-85 (153)
374 3gt7_A Sensor protein; structu 92.8 1.3 4.3E-05 28.9 10.6 68 13-88 6-75 (154)
375 2qxy_A Response regulator; reg 92.8 1.2 4E-05 28.4 10.2 76 14-98 4-81 (142)
376 3fwz_A Inner membrane protein 92.8 0.52 1.8E-05 30.8 7.1 73 13-98 29-103 (140)
377 2y0c_A BCEC, UDP-glucose dehyd 92.8 0.86 2.9E-05 36.5 9.5 87 1-99 19-127 (478)
378 3i42_A Response regulator rece 92.7 1.1 3.7E-05 27.9 10.3 68 14-89 3-72 (127)
379 3nx4_A Putative oxidoreductase 92.7 0.049 1.7E-06 40.9 2.1 81 2-99 160-240 (324)
380 1dz3_A Stage 0 sporulation pro 92.6 1.1 3.9E-05 28.0 8.8 73 15-94 3-78 (130)
381 3cg4_A Response regulator rece 92.6 1.2 4.2E-05 28.2 11.4 68 13-88 6-75 (142)
382 3two_A Mannitol dehydrogenase; 92.6 0.23 7.9E-06 37.7 5.8 77 2-100 189-265 (348)
383 1gu7_A Enoyl-[acyl-carrier-pro 92.4 0.46 1.6E-05 36.2 7.3 90 2-100 181-275 (364)
384 4e7p_A Response regulator; DNA 92.3 1.5 5E-05 28.3 10.6 76 14-96 20-97 (150)
385 4a27_A Synaptic vesicle membra 92.3 0.21 7.2E-06 38.0 5.2 82 2-99 156-237 (349)
386 3ilh_A Two component response 92.2 1.4 4.9E-05 27.9 9.8 75 13-88 8-84 (146)
387 1g55_A DNA cytosine methyltran 92.1 0.26 8.8E-06 37.7 5.4 50 15-75 27-77 (343)
388 1iz0_A Quinone oxidoreductase; 92.0 0.65 2.2E-05 34.4 7.5 78 2-99 139-217 (302)
389 1i4w_A Mitochondrial replicati 92.0 0.15 5.2E-06 39.3 4.0 48 2-53 70-117 (353)
390 1piw_A Hypothetical zinc-type 91.9 0.17 5.7E-06 38.7 4.3 83 2-99 192-275 (360)
391 3mm4_A Histidine kinase homolo 91.9 1.8 6.1E-05 30.0 9.4 74 13-88 60-143 (206)
392 3gg2_A Sugar dehydrogenase, UD 91.9 1.4 4.9E-05 34.9 9.8 87 1-99 13-121 (450)
393 3cnb_A DNA-binding response re 91.8 1.6 5.3E-05 27.6 10.9 69 13-88 7-78 (143)
394 1tmy_A CHEY protein, TMY; chem 91.7 1.4 4.8E-05 27.0 10.0 67 15-88 3-71 (120)
395 3a10_A Response regulator; pho 91.7 1.4 4.7E-05 26.8 10.1 65 16-88 3-69 (116)
396 2pln_A HP1043, response regula 91.6 1.7 5.6E-05 27.5 9.4 67 13-89 17-83 (137)
397 2r25_B Osmosensing histidine p 91.5 1.7 5.8E-05 27.4 9.1 72 15-88 3-76 (133)
398 2uyo_A Hypothetical protein ML 91.5 3.1 0.00011 31.3 10.8 100 2-102 112-220 (310)
399 3r0j_A Possible two component 91.4 2.3 7.9E-05 30.2 9.8 68 13-88 22-91 (250)
400 2lpm_A Two-component response 91.4 0.13 4.3E-06 33.5 2.6 67 14-87 8-76 (123)
401 1yqd_A Sinapyl alcohol dehydro 91.3 0.75 2.6E-05 35.2 7.4 82 2-99 200-281 (366)
402 3hdv_A Response regulator; PSI 91.3 1.8 6E-05 27.2 11.0 70 13-89 6-77 (136)
403 2rdm_A Response regulator rece 91.3 1.7 5.8E-05 27.1 11.1 78 13-98 4-85 (132)
404 3crn_A Response regulator rece 91.3 1.8 6.1E-05 27.2 10.0 67 14-88 3-71 (132)
405 1h2b_A Alcohol dehydrogenase; 91.3 0.35 1.2E-05 36.9 5.5 85 2-100 199-285 (359)
406 3h5i_A Response regulator/sens 91.1 1.9 6.5E-05 27.4 10.7 70 13-89 4-76 (140)
407 2cf5_A Atccad5, CAD, cinnamyl 91.1 0.39 1.3E-05 36.6 5.6 82 2-99 193-274 (357)
408 4a7p_A UDP-glucose dehydrogena 91.0 2.7 9.1E-05 33.4 10.4 87 1-99 19-128 (446)
409 2cdc_A Glucose dehydrogenase g 90.9 0.31 1.1E-05 37.2 4.9 81 2-99 193-277 (366)
410 3t6k_A Response regulator rece 90.8 2.1 7.1E-05 27.1 9.8 67 14-88 4-72 (136)
411 3hdg_A Uncharacterized protein 90.7 2 7E-05 27.0 8.8 77 13-98 6-84 (137)
412 1k68_A Phytochrome response re 90.6 2 7E-05 26.8 11.3 75 14-89 2-80 (140)
413 3n0r_A Response regulator; sig 90.6 1.5 5.1E-05 32.4 8.2 58 13-77 159-216 (286)
414 3kyj_B CHEY6 protein, putative 90.6 1.1 3.7E-05 28.8 6.7 69 13-88 12-84 (145)
415 3cfy_A Putative LUXO repressor 90.5 2.2 7.5E-05 27.1 8.2 67 15-89 5-73 (137)
416 2vn8_A Reticulon-4-interacting 90.5 0.75 2.6E-05 35.2 6.7 83 2-99 197-279 (375)
417 4auk_A Ribosomal RNA large sub 90.5 0.22 7.4E-06 38.8 3.6 72 4-93 225-296 (375)
418 3c3m_A Response regulator rece 90.3 1.6 5.4E-05 27.7 7.4 66 15-88 4-71 (138)
419 3t8y_A CHEB, chemotaxis respon 90.3 2.7 9.2E-05 27.6 8.9 79 13-98 24-104 (164)
420 2j48_A Two-component sensor ki 90.1 2 6.8E-05 25.8 9.4 67 15-89 2-70 (119)
421 3g7u_A Cytosine-specific methy 90.1 0.56 1.9E-05 36.4 5.7 80 15-102 25-121 (376)
422 3cu5_A Two component transcrip 90.0 2.5 8.6E-05 26.9 9.3 77 15-97 3-81 (141)
423 1dbw_A Transcriptional regulat 90.0 2.3 7.7E-05 26.4 11.3 76 14-98 3-81 (126)
424 2k4m_A TR8_protein, UPF0146 pr 89.9 0.25 8.5E-06 33.4 3.1 62 13-99 58-120 (153)
425 1s8n_A Putative antiterminator 89.8 3.4 0.00012 28.2 9.6 77 14-98 13-91 (205)
426 2o3j_A UDP-glucose 6-dehydroge 89.8 6.5 0.00022 31.3 12.5 86 1-98 20-133 (481)
427 4dad_A Putative pilus assembly 89.7 1.6 5.3E-05 27.9 7.0 69 13-88 19-91 (146)
428 3heb_A Response regulator rece 89.6 2.8 9.6E-05 26.9 11.3 74 14-88 4-83 (152)
429 3m6m_D Sensory/regulatory prot 89.5 1.4 4.9E-05 28.2 6.7 67 13-87 13-81 (143)
430 1srr_A SPO0F, sporulation resp 89.5 2.5 8.4E-05 26.0 9.6 74 15-97 4-79 (124)
431 1k66_A Phytochrome response re 89.5 2.7 9.4E-05 26.6 10.4 75 13-88 5-86 (149)
432 2qzj_A Two-component response 89.5 2.7 9.4E-05 26.6 9.9 76 14-98 4-81 (136)
433 3snk_A Response regulator CHEY 89.3 0.65 2.2E-05 29.5 4.8 55 13-75 13-68 (135)
434 2qv0_A Protein MRKE; structura 89.2 2.9 9.9E-05 26.4 10.3 78 13-98 8-89 (143)
435 3trk_A Nonstructural polyprote 89.2 0.37 1.3E-05 35.9 3.7 39 65-103 210-262 (324)
436 1mvo_A PHOP response regulator 89.2 2.8 9.5E-05 26.2 9.9 68 14-89 3-72 (136)
437 3pid_A UDP-glucose 6-dehydroge 89.1 5.4 0.00019 31.5 10.7 83 1-99 47-152 (432)
438 1mb3_A Cell division response 89.0 1.6 5.4E-05 26.9 6.4 66 15-88 2-69 (124)
439 1yio_A Response regulatory pro 89.0 4 0.00014 27.8 10.6 68 14-89 4-73 (208)
440 1ys7_A Transcriptional regulat 89.0 4.3 0.00015 28.1 10.3 77 14-98 7-85 (233)
441 1boo_A Protein (N-4 cytosine-s 88.9 0.065 2.2E-06 40.7 -0.4 52 1-54 261-312 (323)
442 2qsj_A DNA-binding response re 88.9 3.2 0.00011 26.6 10.1 76 14-97 3-82 (154)
443 1kgs_A DRRD, DNA binding respo 88.8 4.3 0.00015 27.9 10.3 76 15-98 3-80 (225)
444 2ayx_A Sensor kinase protein R 88.6 4.1 0.00014 29.2 9.2 67 14-88 129-197 (254)
445 3jte_A Response regulator rece 88.6 3.2 0.00011 26.2 11.0 70 14-89 3-74 (143)
446 1tt7_A YHFP; alcohol dehydroge 88.5 0.083 2.9E-06 39.8 -0.1 80 2-100 164-247 (330)
447 1zgz_A Torcad operon transcrip 87.7 3.3 0.00011 25.3 10.2 66 15-88 3-70 (122)
448 3kcn_A Adenylate cyclase homol 87.7 3.9 0.00013 26.2 10.4 75 14-97 4-80 (151)
449 3b2n_A Uncharacterized protein 87.7 3.6 0.00012 25.7 9.4 75 15-96 4-80 (133)
450 2a9o_A Response regulator; ess 87.7 3.2 0.00011 25.1 9.2 74 16-98 3-78 (120)
451 1xhf_A DYE resistance, aerobic 87.5 3.4 0.00012 25.2 10.3 68 14-89 3-72 (123)
452 3q9s_A DNA-binding response re 87.4 6.1 0.00021 28.1 9.4 67 14-88 37-105 (249)
453 2qvg_A Two component response 87.4 3.9 0.00013 25.8 10.2 75 13-88 6-83 (143)
454 2pl1_A Transcriptional regulat 87.3 3.5 0.00012 25.1 10.4 75 16-98 2-78 (121)
455 1mv8_A GMD, GDP-mannose 6-dehy 87.2 3.9 0.00013 32.1 8.8 86 1-98 11-121 (436)
456 3c85_A Putative glutathione-re 86.7 1.7 5.7E-05 29.5 5.8 74 14-99 63-138 (183)
457 3k96_A Glycerol-3-phosphate de 86.5 2.5 8.6E-05 32.3 7.2 75 13-98 51-131 (356)
458 3vtf_A UDP-glucose 6-dehydroge 86.5 4.2 0.00014 32.3 8.6 30 1-31 32-61 (444)
459 4e21_A 6-phosphogluconate dehy 86.3 2.8 9.5E-05 32.2 7.4 70 13-98 44-113 (358)
460 2eez_A Alanine dehydrogenase; 86.3 2.1 7.1E-05 32.9 6.7 86 2-100 178-266 (369)
461 3tqh_A Quinone oxidoreductase; 86.2 1.8 6.2E-05 32.2 6.2 78 2-99 166-244 (321)
462 1i3c_A Response regulator RCP1 86.1 4.5 0.00015 25.9 7.5 75 13-88 7-85 (149)
463 1p6q_A CHEY2; chemotaxis, sign 86.1 4.3 0.00015 25.0 8.4 68 14-88 6-75 (129)
464 3c3w_A Two component transcrip 86.1 5.5 0.00019 27.7 8.4 76 16-98 3-80 (225)
465 3c97_A Signal transduction his 86.0 3.1 0.00011 26.3 6.6 66 14-87 10-77 (140)
466 4e12_A Diketoreductase; oxidor 85.9 6.3 0.00021 28.8 9.0 86 1-98 15-119 (283)
467 3ggo_A Prephenate dehydrogenas 85.7 1.7 5.9E-05 32.6 5.9 66 15-97 59-125 (314)
468 3llv_A Exopolyphosphatase-rela 85.5 3.9 0.00013 26.2 7.0 50 13-75 28-79 (141)
469 2q3e_A UDP-glucose 6-dehydroge 85.4 12 0.00041 29.6 11.0 86 1-98 16-129 (467)
470 2oqr_A Sensory transduction pr 85.2 7.4 0.00025 26.9 9.4 75 15-98 5-81 (230)
471 4g81_D Putative hexonate dehyd 85.1 9.1 0.00031 27.8 9.6 68 2-75 22-95 (255)
472 1a04_A Nitrate/nitrite respons 85.0 7.2 0.00025 26.6 8.8 78 14-98 5-85 (215)
473 3nhm_A Response regulator; pro 84.5 5.4 0.00018 24.7 9.6 67 14-89 4-72 (133)
474 1jbe_A Chemotaxis protein CHEY 84.4 5.3 0.00018 24.5 10.7 69 13-88 3-73 (128)
475 3iup_A Putative NADPH:quinone 84.2 0.55 1.9E-05 36.2 2.5 64 2-74 185-248 (379)
476 1pjc_A Protein (L-alanine dehy 84.0 3.4 0.00012 31.6 6.9 84 2-98 179-265 (361)
477 4fs3_A Enoyl-[acyl-carrier-pro 83.1 11 0.00036 27.1 10.8 58 13-74 31-94 (256)
478 2gwr_A DNA-binding response re 83.0 9.7 0.00033 26.5 8.9 75 15-98 6-82 (238)
479 2vz8_A Fatty acid synthase; tr 82.7 3.3 0.00011 39.9 7.4 88 2-98 1681-1768(2512)
480 2jba_A Phosphate regulon trans 82.7 6.2 0.00021 24.1 8.8 66 15-88 3-70 (127)
481 3n53_A Response regulator rece 82.4 7 0.00024 24.5 7.8 66 14-88 3-70 (140)
482 1bg6_A N-(1-D-carboxylethyl)-L 82.3 3.4 0.00012 31.0 6.3 77 13-99 26-108 (359)
483 3b1f_A Putative prephenate deh 82.1 2.7 9.3E-05 30.7 5.5 68 13-97 30-98 (290)
484 2qrv_A DNA (cytosine-5)-methyl 82.0 6 0.0002 29.5 7.4 75 17-102 43-142 (295)
485 3l9w_A Glutathione-regulated p 81.9 4.2 0.00014 31.8 6.8 73 13-98 26-100 (413)
486 2vhw_A Alanine dehydrogenase; 81.9 3 0.0001 32.1 5.9 86 2-100 180-268 (377)
487 1eg2_A Modification methylase 81.8 0.92 3.1E-05 34.3 2.9 38 1-38 251-291 (319)
488 2g5c_A Prephenate dehydrogenas 81.7 5.1 0.00017 29.0 6.9 67 15-98 27-94 (281)
489 3qv2_A 5-cytosine DNA methyltr 81.5 2.5 8.6E-05 32.1 5.2 50 15-76 35-86 (327)
490 4gua_A Non-structural polyprot 81.5 1.7 5.7E-05 35.7 4.3 40 64-103 219-272 (670)
491 4fn4_A Short chain dehydrogena 81.5 8.6 0.0003 27.9 8.0 68 2-75 20-93 (254)
492 3h1g_A Chemotaxis protein CHEY 81.4 7.4 0.00025 24.1 10.7 69 14-88 5-75 (129)
493 2hwk_A Helicase NSP2; rossman 81.2 1.5 5.2E-05 32.9 3.7 36 65-100 205-254 (320)
494 3ojo_A CAP5O; rossmann fold, c 81.2 9.4 0.00032 30.1 8.6 90 1-99 22-128 (431)
495 4fgs_A Probable dehydrogenase 81.1 14 0.00048 27.1 9.5 89 2-99 42-158 (273)
496 3dzd_A Transcriptional regulat 80.8 10 0.00036 28.9 8.6 65 16-88 2-68 (368)
497 3goh_A Alcohol dehydrogenase, 80.8 0.41 1.4E-05 35.7 0.6 74 2-99 155-228 (315)
498 3rht_A (gatase1)-like protein; 80.5 6.8 0.00023 28.7 7.1 74 16-98 6-84 (259)
499 1dlj_A UDP-glucose dehydrogena 80.3 5.9 0.0002 30.7 7.1 82 1-98 11-115 (402)
500 3eq2_A Probable two-component 80.1 13 0.00043 28.3 8.9 68 14-89 5-74 (394)
No 1
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.96 E-value=7e-29 Score=182.20 Aligned_cols=144 Identities=22% Similarity=0.347 Sum_probs=128.3
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|.+|..++.+. ++++|+++|+++++++.|++++++.|+. ++++++.+|+.+.++.+. .++||+||+|+.+..+
T Consensus 68 G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~~fD~V~~d~~~~~~ 142 (221)
T 3dr5_A 68 GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----NDSYQLVFGQVSPMDL 142 (221)
T ss_dssp HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TTCEEEEEECCCTTTH
T ss_pred hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CCCcCeEEEcCcHHHH
Confidence 77888888876 4899999999999999999999999998 799999999999877542 4689999999999899
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|++|+|.+..|... ......+++|++.+.++|++.++++|+|||+.+++|-
T Consensus 143 ~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~~ 213 (221)
T 3dr5_A 143 KALVDAAWPLLRRGGALVLADALLDGTIADQTRK------DRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213 (221)
T ss_dssp HHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCC------CHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEEC
T ss_pred HHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCC------ChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHHH
Confidence 9999999999999999999999999998776421 1155678999999999999999999999999999973
No 2
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.96 E-value=5.5e-28 Score=178.95 Aligned_cols=155 Identities=60% Similarity=1.003 Sum_probs=133.1
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+.......++||+||+|+.+..+
T Consensus 81 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~ 160 (237)
T 3c3y_A 81 TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNY 160 (237)
T ss_dssp TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGH
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHH
Confidence 4889999998876 899999999999999999999999998789999999999887653110003679999999998899
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|++|.|.+..|.+..++..++ ..+.+++|++.+.++|++.++++|++||+.+++|+
T Consensus 161 ~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~ 236 (237)
T 3c3y_A 161 IKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL 236 (237)
T ss_dssp HHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence 99999999999999999999999999987764322222333 67789999999999999999999999999999987
No 3
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.95 E-value=6.1e-28 Score=179.34 Aligned_cols=149 Identities=31% Similarity=0.470 Sum_probs=130.7
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+... ...++||+||+|+.+..+
T Consensus 71 ~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~-~~~~~fD~V~~d~~~~~~ 149 (242)
T 3r3h_A 71 TGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE-GGEHQFDFIFIDADKTNY 149 (242)
T ss_dssp CSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH-HCSSCEEEEEEESCGGGH
T ss_pred cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc-cCCCCEeEEEEcCChHHh
Confidence 4888999998775 89999999999999999999999999889999999999988765210 003689999999998889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|++|.|.+..|... ....+.+++|++.+.++|+|.++++|++||+++++|+
T Consensus 150 ~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~ 220 (242)
T 3r3h_A 150 LNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDT------SGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220 (242)
T ss_dssp HHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCC------CHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEECCccCCcccCcccc------ChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEc
Confidence 9999999999999999999999999998776532 1256789999999999999999999999999999986
No 4
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.95 E-value=4.9e-27 Score=174.93 Aligned_cols=155 Identities=52% Similarity=0.882 Sum_probs=131.9
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+.+.....++||+||+|+.+..+
T Consensus 90 ~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~ 169 (247)
T 1sui_A 90 TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNY 169 (247)
T ss_dssp GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTH
T ss_pred cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHH
Confidence 3788999998876 899999999999999999999999998899999999999887652100003679999999998889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCc-ccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|++|.|.+..|....++.. ++ ..+.+++|+..+..++++.++++|++||+.+++|+
T Consensus 170 ~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~ 246 (247)
T 1sui_A 170 LNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246 (247)
T ss_dssp HHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence 999999999999999999999999999887754322211 22 56789999999999999999999999999999986
No 5
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.95 E-value=4.1e-27 Score=173.57 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=130.4
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...|+++|+++|+++++++.|+++++..++.++++++.+|+.+.++ .+ .++||+||+|+....+
T Consensus 82 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~fD~V~~~~~~~~~ 155 (232)
T 3ntv_A 82 IGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVYDMIFIDAAKAQS 155 (232)
T ss_dssp SSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCEEEEEEETTSSSH
T ss_pred hhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCccEEEEcCcHHHH
Confidence 4788888888778999999999999999999999999998899999999998877 54 4689999999998899
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|++|.|.+..+....+++.+. ..+.+++|++.+..++++.++++|++||+.+++|+
T Consensus 156 ~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~ 231 (232)
T 3ntv_A 156 KKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG 231 (232)
T ss_dssp HHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence 99999999999999999999999999887664311221122 56789999999999999999999999999999986
No 6
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.94 E-value=1e-25 Score=166.08 Aligned_cols=147 Identities=36% Similarity=0.505 Sum_probs=129.8
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC--CceeEEEEcCCCc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE--GSFDYAFVDADKD 77 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~--~~fD~I~iD~~~~ 77 (157)
.|.+|..++...| +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+.. .. ++||+||+|+.+.
T Consensus 83 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~---~~~~~~fD~V~~d~~~~ 159 (232)
T 3cbg_A 83 RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQ---GKPLPEFDLIFIDADKR 159 (232)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHT---SSSCCCEEEEEECSCGG
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh---cCCCCCcCEEEECCCHH
Confidence 4788888888776 7899999999999999999999999987899999999988876631 12 6899999999888
Q ss_pred ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
.+..+++.+.++|+|||+++++|+.|.|.+..|... ....+.+++|++.+..+|++.++++|++||+.+++|+
T Consensus 160 ~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~ 232 (232)
T 3cbg_A 160 NYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ------EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232 (232)
T ss_dssp GHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCC------SHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccC------ChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence 899999999999999999999999999998776421 1267889999999999999999999999999999985
No 7
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.94 E-value=1.4e-25 Score=163.86 Aligned_cols=149 Identities=29% Similarity=0.385 Sum_probs=129.6
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...| +++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus 75 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~ 153 (225)
T 3tr6_A 75 TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-GQAWQYDLIYIDADKANT 153 (225)
T ss_dssp TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-TCTTCEEEEEECSCGGGH
T ss_pred chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-cCCCCccEEEECCCHHHH
Confidence 4778888888776 89999999999999999999999999888999999999988765310 001689999999988889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|+.|.|.+..+... ....+.+++|++.+..++++.++++|+++|+.+++|+
T Consensus 154 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~ 224 (225)
T 3tr6_A 154 DLYYEESLKLLREGGLIAVDNVLRRGQVADEENQ------SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 224 (225)
T ss_dssp HHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCcCCcccCcccc------ChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence 9999999999999999999999999988766431 1267789999999999999999999999999999986
No 8
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.94 E-value=3e-25 Score=162.49 Aligned_cols=149 Identities=33% Similarity=0.526 Sum_probs=129.1
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
+|.+|..++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus 80 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~-~~~~~~D~v~~d~~~~~~ 158 (229)
T 2avd_A 80 TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTFDVAVVDADKENC 158 (229)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCEEEEEECSCSTTH
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc-CCCCCccEEEECCCHHHH
Confidence 4778888888766 88999999999999999999999998789999999999887765310 001689999999988889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|+.|.|.+..|... ....+.+++|++.+..++++.++++|++||+.+++|+
T Consensus 159 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~ 229 (229)
T 2avd_A 159 SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229 (229)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT------CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEECCCcCCcccCcccC------ChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence 9999999999999999999999999988765421 1267889999999999999999999999999999985
No 9
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.94 E-value=4.6e-25 Score=164.18 Aligned_cols=146 Identities=23% Similarity=0.348 Sum_probs=128.8
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+. ..++||+||+|+....+
T Consensus 74 ~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~fD~V~~d~~~~~~ 149 (248)
T 3tfw_A 74 GGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAFDLIFIDADKPNN 149 (248)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCCSEEEECSCGGGH
T ss_pred chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCeEEEEECCchHHH
Confidence 4788888988877 899999999999999999999999998899999999999887542 13489999999998889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee-ecC----CeeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV-ALG----DGITICR 154 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~----~G~~v~~ 154 (157)
..+++.+.++|+|||+++++|+.+.|.+..+... ....+.+++|++.+..+|++.++++ |+| ||+.+++
T Consensus 150 ~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~ 223 (248)
T 3tfw_A 150 PHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSA------DERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAW 223 (248)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCcCCcccCcccc------chHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEE
Confidence 9999999999999999999999999998776531 1267889999999999999999988 666 9999999
Q ss_pred Ee
Q 031568 155 RI 156 (157)
Q Consensus 155 ~~ 156 (157)
++
T Consensus 224 ~~ 225 (248)
T 3tfw_A 224 VN 225 (248)
T ss_dssp EC
T ss_pred Ee
Confidence 85
No 10
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.93 E-value=8.5e-25 Score=159.61 Aligned_cols=148 Identities=23% Similarity=0.316 Sum_probs=129.7
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...| +++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+... ..++||+||+|+....+
T Consensus 69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~fD~v~~d~~~~~~ 146 (223)
T 3duw_A 69 GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--KYEPFDFIFIDADKQNN 146 (223)
T ss_dssp TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--TCCCCSEEEECSCGGGH
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--CCCCcCEEEEcCCcHHH
Confidence 4788888988877 89999999999999999999999999888999999999987765321 01579999999998888
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec-----CCeeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL-----GDGITICR 154 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-----~~G~~v~~ 154 (157)
..+++.+.++|+|||+++++|+.+.|.+..+... ....+.+++|++.+..++++.++++|+ +||+.+++
T Consensus 147 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~ 220 (223)
T 3duw_A 147 PAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSN------DPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAV 220 (223)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCcCCcccCcccc------chHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEE
Confidence 9999999999999999999999999988766431 126778999999999999999999999 99999999
Q ss_pred Ee
Q 031568 155 RI 156 (157)
Q Consensus 155 ~~ 156 (157)
++
T Consensus 221 ~~ 222 (223)
T 3duw_A 221 VK 222 (223)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 11
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.91 E-value=6.5e-24 Score=153.82 Aligned_cols=142 Identities=19% Similarity=0.301 Sum_probs=118.5
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++...+ +++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+ .+ ||+||+|+....+
T Consensus 67 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-fD~v~~~~~~~~~ 139 (210)
T 3c3p_A 67 LGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-IDILFMDCDVFNG 139 (210)
T ss_dssp GGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-EEEEEEETTTSCH
T ss_pred ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-CCEEEEcCChhhh
Confidence 3778888888776 89999999999999999999999998778999999999877643 45 9999999988889
Q ss_pred HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
..+++.+.++|+|||+++++|+.|.|.+..+ .. . ...+.+++|++.+..++++.++++|+++|+.+++|+
T Consensus 140 ~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~ 209 (210)
T 3c3p_A 140 ADVLERMNRCLAKNALLIAVNALRRGSVAES-HE-----D-PETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209 (210)
T ss_dssp HHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEEECccccCcccCc-cc-----c-hHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence 9999999999999999999999998876533 11 1 145568899999999999999999999999999985
No 12
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.91 E-value=7.3e-23 Score=151.13 Aligned_cols=151 Identities=32% Similarity=0.450 Sum_probs=128.1
Q ss_pred CcccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--------CCC-C-CceeE
Q 031568 1 MHLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--------SEN-E-GSFDY 69 (157)
Q Consensus 1 ~g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--------~~~-~-~~fD~ 69 (157)
.|.+|..++...+ +++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++.+... .-+ . ++||+
T Consensus 71 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~ 150 (239)
T 2hnk_A 71 TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDL 150 (239)
T ss_dssp TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEE
T ss_pred CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCE
Confidence 3778888888776 78999999999999999999999998778999999999877654210 000 1 68999
Q ss_pred EEEcCCCcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCe
Q 031568 70 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 149 (157)
Q Consensus 70 I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G 149 (157)
||++.....+..+++.+.++|+|||+++++++.|.|.+..|... ......+++|++.+..++++.++++|+++|
T Consensus 151 I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 224 (239)
T 2hnk_A 151 FFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ------EPSTVGIRKFNELVYNDSLVDVSLVPIADG 224 (239)
T ss_dssp EEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC------CHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc------chHHHHHHHHHHHHhhCCCeEEEEEEcCCc
Confidence 99999888888999999999999999999999999988766421 126778999999999999999999999999
Q ss_pred eEEEEEeC
Q 031568 150 ITICRRIF 157 (157)
Q Consensus 150 ~~v~~~~~ 157 (157)
+.+++|+.
T Consensus 225 ~~~~~~~~ 232 (239)
T 2hnk_A 225 VSLVRKRL 232 (239)
T ss_dssp EEEEEECC
T ss_pred eEeeeehh
Confidence 99999864
No 13
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.89 E-value=2.1e-22 Score=147.98 Aligned_cols=150 Identities=23% Similarity=0.352 Sum_probs=112.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..+..++...|+++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++... ..++||+||++.....+.
T Consensus 65 ~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----~~~~fD~I~~~~~~~~~~ 140 (233)
T 2gpy_A 65 IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----LYPLFDVLFIDAAKGQYR 140 (233)
T ss_dssp TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----TSCCEEEEEEEGGGSCHH
T ss_pred CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----cCCCccEEEECCCHHHHH
Confidence 3777888888888999999999999999999999999987789999999998766541 135799999998877888
Q ss_pred HHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 156 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~~~~ 156 (157)
.+++.+.++|+|||+++++|+.|.|.+..++. .+++.+. ....+++|+..+..++++.++++|+++|+.+++|+
T Consensus 141 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~ 214 (233)
T 2gpy_A 141 RFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214 (233)
T ss_dssp HHHHHHGGGEEEEEEEEEETTTC---------------------------CTTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEc
Confidence 99999999999999999999999887654431 1111111 44568889889999999999999999999999975
No 14
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.87 E-value=2.2e-21 Score=141.58 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=110.3
Q ss_pred CcccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|.+|..++... ++++|+++|+++++++.|++|++..++.++++++.+|+.+.++.+... ...++||+||+|+....+
T Consensus 69 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-~~~~~fD~V~~d~~~~~~ 147 (221)
T 3u81_A 69 CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRY 147 (221)
T ss_dssp TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-SCCCCCSEEEECSCGGGH
T ss_pred CCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-cCCCceEEEEEcCCcccc
Confidence 477888888865 489999999999999999999999999888999999999887754200 001689999999987777
Q ss_pred HHH---HHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeee-------cCCe
Q 031568 80 CNY---HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA-------LGDG 149 (157)
Q Consensus 80 ~~~---~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-------~~~G 149 (157)
... ++.+ ++|+|||+++++|+.+.+ .++|++.+.++++|.++++| ++||
T Consensus 148 ~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG 206 (221)
T 3u81_A 148 LPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------TPDFLAYVRGSSSFECTHYSSYLEYMKVVDG 206 (221)
T ss_dssp HHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------CHHHHHHHHHCTTEEEEEEEEEETTTTEEEE
T ss_pred hHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------hHHHHHHHhhCCCceEEEcccccccCCCCCc
Confidence 654 4444 899999999999987643 25777888899999999999 7999
Q ss_pred eEEEEEe
Q 031568 150 ITICRRI 156 (157)
Q Consensus 150 ~~v~~~~ 156 (157)
+.+++++
T Consensus 207 ~~~~~~~ 213 (221)
T 3u81_A 207 LEKAIYQ 213 (221)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 9999875
No 15
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=99.77 E-value=1.1e-18 Score=125.97 Aligned_cols=122 Identities=8% Similarity=-0.053 Sum_probs=94.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC--CCcEEEEEccHHHH--------------HHHHh----hc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSV--------------LDQLL----KY 60 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~--------------l~~~~----~~ 60 (157)
+|+||+++|.. ++++|++||.|++.++.|++|++++|+ .++|+++.||+.+. ++.+. ..
T Consensus 39 tGySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~ 117 (202)
T 3cvo_A 39 SGGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT 117 (202)
T ss_dssp CSHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC
T ss_pred chHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc
Confidence 48999999974 589999999999999999999999998 78999999997543 22211 00
Q ss_pred CCCCCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCee
Q 031568 61 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 140 (157)
Q Consensus 61 ~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (157)
...++||+||+|+.+. ..++..+.++|+|||+|++||+.+++ +...+.+|...+...++..
T Consensus 118 -~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~----------------~y~~v~~~~~~~~~~~~~a 178 (202)
T 3cvo_A 118 -EGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRR----------------WQHQVEEFLGAPLMIGRLA 178 (202)
T ss_dssp -TTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCS----------------SGGGGHHHHCCCEEETTEE
T ss_pred -ccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCc----------------chHHHHHHHhHHhhcCceE
Confidence 0136899999999865 36777888999999999999986543 3345778877666666654
Q ss_pred EE
Q 031568 141 LS 142 (157)
Q Consensus 141 ~~ 142 (157)
..
T Consensus 179 ~f 180 (202)
T 3cvo_A 179 AF 180 (202)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 16
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=99.62 E-value=1.3e-15 Score=115.04 Aligned_cols=129 Identities=11% Similarity=0.043 Sum_probs=98.5
Q ss_pred CcccHHHHHhhC-----CCcEEEEEeCCh--------------------------hHHHHHHHHHHHcCCC-CcEEEEEc
Q 031568 1 MHLPTKLFMTGN-----KILQITAIDVNR--------------------------ETYEIGLPIIKKAGVD-HKINFIES 48 (157)
Q Consensus 1 ~g~st~~l~~~~-----~~~~v~~ve~~~--------------------------~~~~~a~~~~~~~~~~-~~i~~~~~ 48 (157)
.|.|+++++... ++.+|+++|..+ ..++.+++|+++.|+. ++|+++.|
T Consensus 117 ~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~G 196 (282)
T 2wk1_A 117 RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPG 196 (282)
T ss_dssp TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEES
T ss_pred chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCCcCceEEEEe
Confidence 488998887643 588999999642 1478899999999994 89999999
Q ss_pred cHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHH
Q 031568 49 EALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL 127 (157)
Q Consensus 49 d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (157)
++.+.++.+. .++||+||+|+++ ..+..+++.+.++|+|||+|++||+.+. | + ..++++
T Consensus 197 da~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~~~~-----~---------G-~~~Av~ 256 (282)
T 2wk1_A 197 WFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDYMMC-----P---------P-CKDAVD 256 (282)
T ss_dssp CHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSCTTC-----H---------H-HHHHHH
T ss_pred CHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCCCCC-----H---------H-HHHHHH
Confidence 9999988652 4689999999987 3467889999999999999999998531 1 1 455666
Q ss_pred HHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568 128 DLNRSLADDPRVQLSHVALGDGITIC 153 (157)
Q Consensus 128 ~~~~~l~~~~~~~~~~~p~~~G~~v~ 153 (157)
+|++ ..++...+.+++.+...-
T Consensus 257 Ef~~----~~~i~~~i~~~~~~~v~~ 278 (282)
T 2wk1_A 257 EYRA----KFDIADELITIDRDGVYW 278 (282)
T ss_dssp HHHH----HTTCCSCCEECSSSCEEE
T ss_pred HHHH----hcCCceEEEEecCEEEEE
Confidence 6653 334566688887654433
No 17
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.62 E-value=4e-15 Score=113.69 Aligned_cols=134 Identities=12% Similarity=0.225 Sum_probs=101.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..++...+..+|++||+++++++.|++++.. .++ .++++++.+|+.++++.. .++||+|++|+..+
T Consensus 107 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~~~fD~Ii~d~~~~~ 180 (304)
T 2o07_A 107 GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------QDAFDVIITDSSDPM 180 (304)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------SSCEEEEEEECC---
T ss_pred hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------CCCceEEEECCCCCC
Confidence 55555566555779999999999999999999876 344 468999999999987642 56899999997542
Q ss_pred ------ccHHHHHHHHhcccCCeEEEEecc-cCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec---C
Q 031568 78 ------NYCNYHERLMKLLKVGGIAVYDNT-LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL---G 147 (157)
Q Consensus 78 ------~~~~~~~~~~~~L~~gG~iv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~---~ 147 (157)
...++++.+.++|+|||++++++. .|... ...+.++++++.+..+.++..+.+|. |
T Consensus 181 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~--------------~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g 246 (304)
T 2o07_A 181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL--------------DLIKEMRQFCQSLFPVVAYAYCTIPTYPSG 246 (304)
T ss_dssp --------CHHHHHHHHHEEEEEEEEEEEECTTTCH--------------HHHHHHHHHHHHHCSEEEEEEEECTTSGGG
T ss_pred CcchhhhHHHHHHHHHhccCCCeEEEEecCCcccch--------------HHHHHHHHHHHHhCCCceeEEEEeccccCc
Confidence 235689999999999999999763 23210 15567888888888888888888887 3
Q ss_pred -CeeEEEEE
Q 031568 148 -DGITICRR 155 (157)
Q Consensus 148 -~G~~v~~~ 155 (157)
.|+.++.|
T Consensus 247 ~~g~~~as~ 255 (304)
T 2o07_A 247 QIGFMLCSK 255 (304)
T ss_dssp EEEEEEEES
T ss_pred ceEEEEEeC
Confidence 58888765
No 18
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.60 E-value=3.4e-15 Score=114.57 Aligned_cols=135 Identities=17% Similarity=0.264 Sum_probs=98.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..+++..+..+|+++|+++.+++.|++++... ++ .++++++.+|+.++++.. .++||+|++|+..+
T Consensus 120 G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~ 193 (314)
T 2b2c_A 120 GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------KNEFDVIITDSSDPV 193 (314)
T ss_dssp SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------TTCEEEEEECCC---
T ss_pred CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------CCCceEEEEcCCCCC
Confidence 555556666657899999999999999999998764 44 468999999999987652 56899999997421
Q ss_pred -----cc-HHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeec---CC
Q 031568 78 -----NY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL---GD 148 (157)
Q Consensus 78 -----~~-~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~---~~ 148 (157)
.+ .++++.+.++|+|||++++++.. ... .......+.++++.+..+.++..+.+|. |+
T Consensus 194 ~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~----~~~---------~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~ 260 (314)
T 2b2c_A 194 GPAESLFGQSYYELLRDALKEDGILSSQGES----VWL---------HLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGS 260 (314)
T ss_dssp ----------HHHHHHHHEEEEEEEEEECCC----TTT---------CHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGE
T ss_pred CcchhhhHHHHHHHHHhhcCCCeEEEEECCC----ccc---------CHHHHHHHHHHHHHHCCcceEEEEEecCcCCCc
Confidence 12 67899999999999999997521 100 0114556777777777777888888887 45
Q ss_pred -eeEEEEE
Q 031568 149 -GITICRR 155 (157)
Q Consensus 149 -G~~v~~~ 155 (157)
|+.++.|
T Consensus 261 ~g~~~ask 268 (314)
T 2b2c_A 261 MGYLICAK 268 (314)
T ss_dssp EEEEEEES
T ss_pred eEEEEEeC
Confidence 8888765
No 19
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.51 E-value=2.5e-13 Score=104.09 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=96.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cC-C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AG-V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~-~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..+++..+..+|++||+++.+++.|++++.. .+ + .++++++.+|+.++++.. .++||+|++|...+
T Consensus 89 G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~ 162 (314)
T 1uir_A 89 GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------EERYDVVIIDLTDP 162 (314)
T ss_dssp SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------CCCEEEEEEECCCC
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------CCCccEEEECCCCc
Confidence 44455555555688999999999999999999875 22 2 468999999999987653 56899999997543
Q ss_pred c----------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEeeecC
Q 031568 78 N----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 147 (157)
Q Consensus 78 ~----------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~ 147 (157)
. ..++++.+.++|+|||++++....... ..+ . ..+.+.+.++.+..+..+..+.+|..
T Consensus 163 ~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~---------~-~~~~~~~~l~~~F~~v~~~~~~vP~~ 230 (314)
T 1uir_A 163 VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILL--THH---------R-VHPVVHRTVREAFRYVRSYKNHIPGF 230 (314)
T ss_dssp BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------------C-HHHHHHHHHHTTCSEEEEEEEEEGGG
T ss_pred ccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccc--cCH---------H-HHHHHHHHHHHHCCceEEEEEecCCC
Confidence 3 478899999999999999985321100 001 1 45556666666656666677788987
Q ss_pred Ce---eEEEEE
Q 031568 148 DG---ITICRR 155 (157)
Q Consensus 148 ~G---~~v~~~ 155 (157)
+| +.++.|
T Consensus 231 ~g~~~~~~as~ 241 (314)
T 1uir_A 231 FLNFGFLLASD 241 (314)
T ss_dssp TEEEEEEEEES
T ss_pred CCeEEEEEEEC
Confidence 66 555554
No 20
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=99.50 E-value=3.5e-13 Score=101.72 Aligned_cols=132 Identities=10% Similarity=0.097 Sum_probs=93.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC--------CCcEEEEEccHHHHHHHHhhcCCCCCceeEEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLDQLLKYSENEGSFDYAF 71 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~--------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~ 71 (157)
|..+..++.. +..+|++||+++.+++.|++++ .. ++ .++++++.+|+.++++. .++||+|+
T Consensus 87 G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------~~~fD~Ii 157 (281)
T 1mjf_A 87 GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------NRGFDVII 157 (281)
T ss_dssp SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------CCCEEEEE
T ss_pred CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------cCCeeEEE
Confidence 4445555555 7889999999999999999998 44 33 46899999999988764 35799999
Q ss_pred EcCCCc-----c--cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeeEEee
Q 031568 72 VDADKD-----N--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV 144 (157)
Q Consensus 72 iD~~~~-----~--~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (157)
+|+..+ . ..++++.+.++|+|||+++++.... .. .....+.+.+.+..+..+..+..+.+
T Consensus 158 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~----~~---------~~~~~~~~~~~l~~~f~~v~~~~~~v 224 (281)
T 1mjf_A 158 ADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV----YL---------FTDELISAYKEMKKVFDRVYYYSFPV 224 (281)
T ss_dssp EECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET----TT---------SHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc----cc---------CHHHHHHHHHHHHHHCCceEEEEEec
Confidence 997531 1 4778999999999999999873211 00 00134455555555555566667778
Q ss_pred ecCCe---eEEEEE
Q 031568 145 ALGDG---ITICRR 155 (157)
Q Consensus 145 p~~~G---~~v~~~ 155 (157)
|..+| +.++.|
T Consensus 225 P~~~g~~~~~~as~ 238 (281)
T 1mjf_A 225 IGYASPWAFLVGVK 238 (281)
T ss_dssp TTSSSSEEEEEEEE
T ss_pred CCCCceEEEEEeeC
Confidence 87655 666665
No 21
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.48 E-value=2.9e-13 Score=102.75 Aligned_cols=87 Identities=15% Similarity=0.273 Sum_probs=76.1
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHH
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE 84 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~ 84 (157)
|++++++.++++|+++|+++++++.||+++++.|+ ++++++.+|+.++ + +++||+||+++..+....+++
T Consensus 137 ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--------d~~FDvV~~~a~~~d~~~~l~ 206 (298)
T 3fpf_A 137 TGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--------GLEFDVLMVAALAEPKRRVFR 206 (298)
T ss_dssp HHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--------GCCCSEEEECTTCSCHHHHHH
T ss_pred HHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--------CCCcCEEEECCCccCHHHHHH
Confidence 44445556799999999999999999999999999 7999999999874 2 468999999887777889999
Q ss_pred HHHhcccCCeEEEEecc
Q 031568 85 RLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~~~ 101 (157)
.+.+.|+|||++++.+.
T Consensus 207 el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 207 NIHRYVDTETRIIYRTY 223 (298)
T ss_dssp HHHHHCCTTCEEEEEEC
T ss_pred HHHHHcCCCcEEEEEcC
Confidence 99999999999999764
No 22
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=99.48 E-value=4.6e-13 Score=103.48 Aligned_cols=97 Identities=19% Similarity=0.395 Sum_probs=76.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..++...+..+|+++|+++.+++.|++++... ++ .++++++.+|+.++++.+ ..++||+|++|+..+
T Consensus 132 G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~~~~fDlIi~d~~~p~ 206 (334)
T 1xj5_A 132 GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----AEGSYDAVIVDSSDPI 206 (334)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----CTTCEEEEEECCCCTT
T ss_pred cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----cCCCccEEEECCCCcc
Confidence 555555666657889999999999999999998763 44 358999999999987643 146899999987421
Q ss_pred ---c---cHHHHHHHHhcccCCeEEEEe-cccC
Q 031568 78 ---N---YCNYHERLMKLLKVGGIAVYD-NTLW 103 (157)
Q Consensus 78 ---~---~~~~~~~~~~~L~~gG~iv~~-~~~~ 103 (157)
. +.++++.+.++|+|||+++++ +..|
T Consensus 207 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 207 GPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp SGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred CcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 1 478999999999999999996 4444
No 23
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.45 E-value=6.7e-13 Score=99.95 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=73.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..+..+++..+..+|++||+++.+++.|++++... ++ .++++++.+|+.++++.. .++||+|++|...+.
T Consensus 87 G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~~~fD~Ii~d~~~~~ 160 (275)
T 1iy9_A 87 GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------ENQYDVIMVDSTEPV 160 (275)
T ss_dssp CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------CSCEEEEEESCSSCC
T ss_pred HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CCCeeEEEECCCCCC
Confidence 433444444446789999999999999999998652 34 368999999999987642 568999999975321
Q ss_pred -------cHHHHHHHHhcccCCeEEEEec
Q 031568 79 -------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 -------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++++.+.+.|+|||++++..
T Consensus 161 ~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 161 GPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 2678999999999999999964
No 24
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.45 E-value=3.7e-12 Score=102.21 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=77.1
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|.-|+.+++..+ .++|+++|+++.+++.+++|++++|+. ++++++|+.+..... .++||+|++|++...
T Consensus 113 G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~------~~~FD~Il~D~PcSg~G 184 (464)
T 3m6w_A 113 GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAF------GTYFHRVLLDAPCSGEG 184 (464)
T ss_dssp CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHH------CSCEEEEEEECCCCCGG
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhc------cccCCEEEECCCcCCcc
Confidence 555677777654 589999999999999999999999985 999999998875433 578999999986421
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.++|+|||++++..+.+
T Consensus 185 ~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 185 MFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp GTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred ccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 1567888899999999999987754
No 25
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.43 E-value=3.1e-12 Score=90.67 Aligned_cols=94 Identities=10% Similarity=0.062 Sum_probs=75.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..+++ .+..+|+++|+++++++.|++|++..++ ++++++++|+.+..+.+. .++||+|++|+....
T Consensus 56 G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~-----~~~fD~i~~~~p~~~~~~ 128 (189)
T 3p9n_A 56 GALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT-----TSPVDLVLADPPYNVDSA 128 (189)
T ss_dssp CHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC-----SSCCSEEEECCCTTSCHH
T ss_pred CHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc-----CCCccEEEECCCCCcchh
Confidence 444443443 4677999999999999999999999998 589999999999876542 578999999986433
Q ss_pred -cHHHHHHHHh--cccCCeEEEEeccc
Q 031568 79 -YCNYHERLMK--LLKVGGIAVYDNTL 102 (157)
Q Consensus 79 -~~~~~~~~~~--~L~~gG~iv~~~~~ 102 (157)
+...++.+.+ +|+|||+++++...
T Consensus 129 ~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 129 DVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred hHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 5667788877 99999999997643
No 26
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.42 E-value=4.6e-12 Score=101.50 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=77.0
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|.-|+.+++.. +.++|+++|+++.+++.+++|++++|+. ++.++++|+.+..+.. .++||+|++|+++..
T Consensus 117 Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~------~~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 117 GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHF------SGFFDRIVVDAPCSGEG 189 (456)
T ss_dssp CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHH------TTCEEEEEEECCCCCGG
T ss_pred CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhc------cccCCEEEECCCCCCcc
Confidence 44566666644 4689999999999999999999999996 7999999999875444 568999999986321
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.++|+|||.+++..+..
T Consensus 190 ~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 190 MFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp GTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 1256888889999999999987754
No 27
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.41 E-value=8.5e-12 Score=91.71 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=76.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..+..++...++.+|+++|+++++++.|+++++..++. +++++++|+.+...... ..++||+|+++.. ..+.
T Consensus 81 ~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~----~~~~fD~V~~~~~-~~~~ 154 (240)
T 1xdz_A 81 AGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKD----VRESYDIVTARAV-ARLS 154 (240)
T ss_dssp SCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTT----TTTCEEEEEEECC-SCHH
T ss_pred CCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhccccc----ccCCccEEEEecc-CCHH
Confidence 3677777887778999999999999999999999999986 69999999987531000 1368999999874 4678
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.++|+|||.+++.
T Consensus 155 ~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 155 VLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp HHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 8999999999999999874
No 28
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.39 E-value=1.7e-12 Score=93.04 Aligned_cols=92 Identities=16% Similarity=0.063 Sum_probs=79.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...|..+|+++|+++++++.|+++++..++ ++++++.+|+.+.++. .++||+|+++.....+..
T Consensus 52 G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-------~~~~D~i~~~~~~~~~~~ 123 (204)
T 3e05_A 52 ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD-------LPDPDRVFIGGSGGMLEE 123 (204)
T ss_dssp CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT-------SCCCSEEEESCCTTCHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc-------CCCCCEEEECCCCcCHHH
Confidence 66677788787889999999999999999999999998 5899999999776542 367999999987667888
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.+.|+|||.+++...
T Consensus 124 ~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 124 IIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp HHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHhcCCCeEEEEEec
Confidence 99999999999999998654
No 29
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.39 E-value=3.6e-12 Score=96.92 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=71.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..++...+..+|+++|+++.+++.|++++.. .++ .++++++.+|+.++++.. .++||+|++|+..+
T Consensus 102 G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~ 175 (296)
T 1inl_A 102 GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------KNEFDVIIIDSTDPT 175 (296)
T ss_dssp CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------SSCEEEEEEEC----
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------CCCceEEEEcCCCcc
Confidence 43444455454688999999999999999999865 333 368999999999876532 46899999987533
Q ss_pred -------ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...++++.+.++|+|||++++..
T Consensus 176 ~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 176 AGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp ------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 23688999999999999999963
No 30
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.39 E-value=1.1e-11 Score=90.28 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=77.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc---CCCc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD---ADKD 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD---~~~~ 77 (157)
+|..+..++...|+.+|++||+++.+++.|+++++..++. +++++.+|+.+.++... +.++||.|++. +...
T Consensus 45 ~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~----~~~~~d~v~~~~~~p~~~ 119 (218)
T 3dxy_A 45 MGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMI----PDNSLRMVQLFFPDPWHK 119 (218)
T ss_dssp TCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHS----CTTCEEEEEEESCCCCCS
T ss_pred ChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHc----CCCChheEEEeCCCCccc
Confidence 4777888888889999999999999999999999999886 69999999999877532 26789999986 2111
Q ss_pred --c------cHHHHHHHHhcccCCeEEEEe
Q 031568 78 --N------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --~------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
. ...+++.+.+.|+|||++++.
T Consensus 120 ~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 120 ARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp GGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 1 235899999999999999874
No 31
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.38 E-value=1.9e-12 Score=99.19 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=74.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..+++.+|+.+|++||+++.+++.||+++.... .++++++.+|+.+++..+ ..++||+|++|.....
T Consensus 101 G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~~fDvIi~D~~~~~~~~ 174 (317)
T 3gjy_A 101 CTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TPASRDVIIRDVFAGAITP 174 (317)
T ss_dssp GHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTTCEEEEEECCSTTSCCC
T ss_pred CHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cCCCCCEEEECCCCccccc
Confidence 4445556666799999999999999999999986532 468999999999988653 1468999999863221
Q ss_pred ----cHHHHHHHHhcccCCeEEEEec
Q 031568 79 ----YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ----~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++++.+.+.|+|||++++..
T Consensus 175 ~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 175 QNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp GGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 2689999999999999999865
No 32
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.37 E-value=4.3e-12 Score=88.78 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=74.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~ 79 (157)
|..+..++.. +..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++.. .++||+|++++.. ...
T Consensus 43 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~fD~i~~~~~~~~~~~ 115 (177)
T 2esr_A 43 GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGRFDLVFLDPPYAKETI 115 (177)
T ss_dssp CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSCEEEEEECCSSHHHHH
T ss_pred CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCCCCEEEECCCCCcchH
Confidence 4444445544 668999999999999999999999998778999999999877653 4679999999763 234
Q ss_pred HHHHHHHH--hcccCCeEEEEecc
Q 031568 80 CNYHERLM--KLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~--~~L~~gG~iv~~~~ 101 (157)
.+.++.+. ++|+|||++++...
T Consensus 116 ~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 116 VATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCcCCCcEEEEEEC
Confidence 55666666 89999999998654
No 33
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.36 E-value=2.5e-11 Score=91.16 Aligned_cols=98 Identities=24% Similarity=0.180 Sum_probs=78.0
Q ss_pred cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
|.-|..++...++ ++|+++|+++.+++.+++|+++.|+. +++++.+|+.+....+.. ..++||+|++|++..
T Consensus 95 G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~---~~~~fD~Vl~d~Pcs~~g 170 (274)
T 3ajd_A 95 GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLK---NEIFFDKILLDAPCSGNI 170 (274)
T ss_dssp CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHH---TTCCEEEEEEEECCC---
T ss_pred cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhh---ccccCCEEEEcCCCCCCc
Confidence 5566677776555 89999999999999999999999986 899999999887543210 145799999996432
Q ss_pred ------------------ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 ------------------NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 ------------------~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.++|+|||.+++..+..
T Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 171 IKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp ---------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 23678888999999999999987643
No 34
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.36 E-value=1.8e-11 Score=97.41 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=96.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|.-|..++...++++|+++|+++.+++.+++|+++.|+ +++++.+|+.+..+.+. .++||+|++|++...
T Consensus 258 G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~-----~~~fD~Vl~D~Pcsg~g~ 330 (429)
T 1sqg_A 258 GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCG-----EQQFDRILLDAPCSATGV 330 (429)
T ss_dssp CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHT-----TCCEEEEEEECCCCCGGG
T ss_pred hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcc-----cCCCCEEEEeCCCCcccc
Confidence 55677777777779999999999999999999999987 47899999987654332 468999999975421
Q ss_pred ----------------------cHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 031568 79 ----------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD 136 (157)
Q Consensus 79 ----------------------~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (157)
...+++.+.++|+|||.+++.++.+.. + +....++.|+ ..+
T Consensus 331 ~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~-----~---------ene~~v~~~l---~~~ 393 (429)
T 1sqg_A 331 IRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP-----E---------ENSLQIKAFL---QRT 393 (429)
T ss_dssp TTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG-----G---------GTHHHHHHHH---HHC
T ss_pred cCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh-----h---------hHHHHHHHHH---HhC
Confidence 136788889999999999998765421 1 1344566664 345
Q ss_pred CCee-----------EEeeec---CCeeEEEEE
Q 031568 137 PRVQ-----------LSHVAL---GDGITICRR 155 (157)
Q Consensus 137 ~~~~-----------~~~~p~---~~G~~v~~~ 155 (157)
|++. ..++|- +||+++++-
T Consensus 394 ~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 426 (429)
T 1sqg_A 394 ADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL 426 (429)
T ss_dssp TTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred CCCEEeCCCCCCCCeEEECCCCCCCCceEEEEE
Confidence 5543 246773 589999863
No 35
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.36 E-value=1.3e-12 Score=96.22 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=77.4
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
+|+++..++... ..++++||++|.+++.|+++.+..+. +++++.+|+.+.+..+ +.++||.|+.|....
T Consensus 71 ~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~-----~~~~FD~i~~D~~~~~~~ 142 (236)
T 3orh_A 71 MAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL-----PDGHFDGILYDTYPLSEE 142 (236)
T ss_dssp TSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS-----CTTCEEEEEECCCCCBGG
T ss_pred ccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccc-----cccCCceEEEeeeecccc
Confidence 577777777654 46899999999999999999887764 7899999999887655 367899999987422
Q ss_pred -----ccHHHHHHHHhcccCCeEEEEecccCCc
Q 031568 78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGG 105 (157)
Q Consensus 78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~ 105 (157)
....+++++.++|||||++++.|....+
T Consensus 143 ~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~ 175 (236)
T 3orh_A 143 TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 175 (236)
T ss_dssp GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred hhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence 2456788899999999999997755433
No 36
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.35 E-value=1.4e-11 Score=88.74 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=74.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++.. +.+|+++|+++++++.|+++++..++.++++++.+|+.+.++. .++||+||+++.. ...
T Consensus 67 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~-------~~~~D~v~~~~~~-~~~- 135 (204)
T 3njr_A 67 GSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD-------LPLPEAVFIGGGG-SQA- 135 (204)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT-------SCCCSEEEECSCC-CHH-
T ss_pred CHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc-------CCCCCEEEECCcc-cHH-
Confidence 5555555555 8899999999999999999999999877899999999885542 3579999998754 344
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.+.|+|||.+++..+
T Consensus 136 ~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 136 LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp HHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 89999999999999999754
No 37
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.35 E-value=2.3e-12 Score=97.95 Aligned_cols=93 Identities=15% Similarity=0.239 Sum_probs=70.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC---C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG---V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..+++..+..+|++||+|+.+++.|++++...+ + .++++++.+|+.++++.. .++||+|++|...+
T Consensus 95 G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------~~~fDvIi~D~~~p 168 (294)
T 3adn_A 95 GAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQTFDVIISDCTDP 168 (294)
T ss_dssp CHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CC------CCCEEEEEECC---
T ss_pred hHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhc------CCCccEEEECCCCc
Confidence 4444455555568899999999999999999987652 2 358999999999887642 56899999987432
Q ss_pred c-------cHHHHHHHHhcccCCeEEEEec
Q 031568 78 N-------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~-------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
. ..++++.+.+.|+|||++++..
T Consensus 169 ~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 169 IGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp -------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 1 2678999999999999999863
No 38
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.34 E-value=4e-12 Score=88.68 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=75.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...|+.+|+++|+++.+++.|+++++..++.+++ ++.+|+.+.++.. .++||+|++...... ..
T Consensus 37 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~------~~~~D~i~~~~~~~~-~~ 108 (178)
T 3hm2_A 37 GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV------PDNPDVIFIGGGLTA-PG 108 (178)
T ss_dssp THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC------CSCCSEEEECC-TTC-TT
T ss_pred CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc------CCCCCEEEECCcccH-HH
Confidence 555666677778999999999999999999999999987789 8899987755421 278999999875544 67
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.+.|+|||.+++...
T Consensus 109 ~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 109 VFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp HHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 89999999999999998654
No 39
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.33 E-value=1.9e-11 Score=85.84 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=74.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~ 79 (157)
|..+..++. .+..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++.+.. ..++||+|++++. ....
T Consensus 56 G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~fD~i~~~~~~~~~~~ 131 (187)
T 2fhp_A 56 GGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQFDLVLLDPPYAKQEI 131 (187)
T ss_dssp CHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCGGGCCH
T ss_pred CHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---cCCCCCEEEECCCCCchhH
Confidence 444444444 466899999999999999999999998877899999999987664421 1468999999976 2344
Q ss_pred HHHHHHH--HhcccCCeEEEEecc
Q 031568 80 CNYHERL--MKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~--~~~L~~gG~iv~~~~ 101 (157)
...++.+ .++|+|||++++...
T Consensus 132 ~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 132 VSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCCCCEEEEEeC
Confidence 5666666 788999999998644
No 40
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.32 E-value=1.6e-11 Score=94.04 Aligned_cols=94 Identities=23% Similarity=0.229 Sum_probs=76.1
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|.-|..++... ++++|+++|+++.+++.+++|+++.|+. +++++++|+.+... . .++||+|++|++...
T Consensus 130 G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~-~------~~~fD~Il~d~Pcsg~g 201 (315)
T 1ixk_A 130 GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE-L------NVEFDKILLDAPCTGSG 201 (315)
T ss_dssp SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG-G------CCCEEEEEEECCTTSTT
T ss_pred CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc-c------cccCCEEEEeCCCCCcc
Confidence 56677777765 4689999999999999999999999986 79999999987532 2 467999999975321
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.++|+|||.+++.++..
T Consensus 202 ~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 202 TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp TCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 1467888899999999999987643
No 41
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.31 E-value=1.5e-11 Score=94.53 Aligned_cols=93 Identities=18% Similarity=0.309 Sum_probs=72.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH--cCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~--~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..+++..+..+|+++|+++++++.|++++.. .++ .++++++.+|+.+.++.. .++||+|++|+..+
T Consensus 128 G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fDvIi~d~~~p~ 201 (321)
T 2pt6_A 128 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSSDPI 201 (321)
T ss_dssp CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECCCSS
T ss_pred cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------CCCceEEEECCcCCC
Confidence 33344455444689999999999999999999876 233 368999999999987643 56899999997321
Q ss_pred -----cc-HHHHHHHHhcccCCeEEEEec
Q 031568 78 -----NY-CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 -----~~-~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+ .++++.+.+.|+|||++++..
T Consensus 202 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 202 GPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp SGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 12 688999999999999999964
No 42
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=99.31 E-value=5.2e-11 Score=93.76 Aligned_cols=96 Identities=23% Similarity=0.259 Sum_probs=76.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-+..++.. +..+|+++|+++.+++.|++|++.+++.++++++.+|+.+.++.+.. ..++||+|++|++.
T Consensus 229 G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~Vi~dpP~~~~~~ 304 (396)
T 2as0_A 229 GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---KGEKFDIVVLDPPAFVQHE 304 (396)
T ss_dssp THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCSSG
T ss_pred CHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh---hCCCCCEEEECCCCCCCCH
Confidence 3334444443 45699999999999999999999999876899999999998775532 14689999999864
Q ss_pred -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 -------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 -------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+..++..+.++|+|||++++..+
T Consensus 305 ~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 305 KDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp GGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3456788889999999998887654
No 43
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.31 E-value=1.5e-11 Score=98.48 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=76.1
Q ss_pred cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc-
Q 031568 2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY- 79 (157)
Q Consensus 2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~- 79 (157)
|.-|..++...++ ++|+++|+++.+++.+++|+++.|+. +++++.+|+.+..+.+ .+++||+|++|++....
T Consensus 271 G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~-----~~~~fD~Vl~D~Pcsg~g 344 (450)
T 2yxl_A 271 GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEII-----GEEVADKVLLDAPCTSSG 344 (450)
T ss_dssp CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSSS-----CSSCEEEEEEECCCCCGG
T ss_pred cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchhh-----ccCCCCEEEEcCCCCCCe
Confidence 5566777776665 89999999999999999999999985 7999999997653212 12679999999754221
Q ss_pred ------------------------HHHHHHHHhcccCCeEEEEecccC
Q 031568 80 ------------------------CNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 80 ------------------------~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+++.+.++|+|||.+++.++..
T Consensus 345 ~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 345 TIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp GTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred eeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 467888899999999999877654
No 44
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.31 E-value=1e-11 Score=89.11 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=72.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCc-eeEEEEcCC--Cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGS-FDYAFVDAD--KD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~-fD~I~iD~~--~~ 77 (157)
|..+..+++. ...+|+++|+++++++.|++|++..++. ++++++.+|+.+.++.+ ..++ ||+|++|+. ..
T Consensus 65 G~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~~fD~I~~~~~~~~~ 138 (201)
T 2ift_A 65 GSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----QNQPHFDVVFLDPPFHFN 138 (201)
T ss_dssp CHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----CSSCCEEEEEECCCSSSC
T ss_pred CHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----ccCCCCCEEEECCCCCCc
Confidence 4334433433 3579999999999999999999999984 58999999998875432 1467 999999986 23
Q ss_pred ccHHHHHHH--HhcccCCeEEEEeccc
Q 031568 78 NYCNYHERL--MKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ~~~~~~~~~--~~~L~~gG~iv~~~~~ 102 (157)
.+...++.+ .++|+|||++++....
T Consensus 139 ~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 139 LAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 456677777 5689999999986543
No 45
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.30 E-value=5.8e-11 Score=95.77 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=76.9
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|.-|+.++... +.++|+++|+++.+++.+++|++++|+. +++++++|+.+..... .++||.|++|++...
T Consensus 129 G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~------~~~fD~Il~D~PcSg~G 201 (479)
T 2frx_A 129 GSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAV------PEMFDAILLDAPCSGEG 201 (479)
T ss_dssp SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHS------TTCEEEEEEECCCCCGG
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhc------cccCCEEEECCCcCCcc
Confidence 55677777765 4689999999999999999999999986 7999999998764322 468999999975421
Q ss_pred -----------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -----------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -----------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.++|+|||++++.++.+
T Consensus 202 ~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 202 VVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp GGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1356788889999999999987754
No 46
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.29 E-value=4e-11 Score=84.36 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=68.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-C----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~---- 76 (157)
|..|..++.. +.+|+++|+++++++.|+++++..++ ++++++.+++.+.. .. .+++||+|+++.. .
T Consensus 34 G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~-~~-----~~~~fD~v~~~~~~~~~~~ 104 (185)
T 3mti_A 34 GNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLD-HY-----VREPIRAAIFNLGYLPSAD 104 (185)
T ss_dssp SHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGG-GT-----CCSCEEEEEEEEC------
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHH-hh-----ccCCcCEEEEeCCCCCCcc
Confidence 5556666655 89999999999999999999999998 58999998876542 22 2568999998831 1
Q ss_pred -------cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 -------DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 -------~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......++.+.+.|+|||.+++.
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 105 KSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 12345678888999999999884
No 47
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.29 E-value=1e-11 Score=92.36 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=72.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++... ..+|+++|+++.+++.|++|++.+++.++++++++|+.+..+.+ ..++||+|+++++.-
T Consensus 61 G~~~~~la~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fD~Ii~npPy~~~~~ 134 (259)
T 3lpm_A 61 GIIPLLLSTRT-KAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-----PKERADIVTCNPPYFATPD 134 (259)
T ss_dssp THHHHHHHTTC-CCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-----CTTCEEEEEECCCC-----
T ss_pred hHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-----ccCCccEEEECCCCCCCcc
Confidence 44455555553 34999999999999999999999999889999999999875433 246899999986421
Q ss_pred -------------------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 -------------------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -------------------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+..+++.+.++|+|||.+++
T Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 135 TSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp ------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 134688889999999999998
No 48
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.29 E-value=2.4e-11 Score=90.22 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=76.7
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..++.++..+|+.+|+++|+++++++.|++|++.+|+. +++++++|+.+...... ..++||+|++.+. ..+.
T Consensus 91 ~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~----~~~~fD~I~s~a~-~~~~ 164 (249)
T 3g89_A 91 AGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAG----HREAYARAVARAV-APLC 164 (249)
T ss_dssp TTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTT----TTTCEEEEEEESS-CCHH
T ss_pred CCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccc----cCCCceEEEECCc-CCHH
Confidence 3677778888889999999999999999999999999986 59999999987642100 1368999999864 3567
Q ss_pred HHHHHHHhcccCCeEEEE
Q 031568 81 NYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~ 98 (157)
.+++.+.++|+|||.+++
T Consensus 165 ~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 165 VLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp HHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 889999999999999886
No 49
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.29 E-value=3.5e-11 Score=94.78 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=77.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|.-++.++.. ...+|+++|+++.+++.|++|++.+|+ .++++++.+|+.+.++.+.+ ..++||+|++|++.
T Consensus 232 G~~sl~la~~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---~~~~fD~Ii~dpP~~~~~ 307 (396)
T 3c0k_A 232 GGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---RGEKFDVIVMDPPKFVEN 307 (396)
T ss_dssp CSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH---TTCCEEEEEECCSSTTTC
T ss_pred CHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh---cCCCCCEEEECCCCCCCC
Confidence 4444445543 357999999999999999999999998 66899999999998876532 13589999999864
Q ss_pred --------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 --------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 --------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+..++..+.++|+|||++++...
T Consensus 308 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 308 KSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4567788889999999999998654
No 50
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=99.29 E-value=5.4e-11 Score=92.44 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=67.5
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcC---CC----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-c--
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAG---VD----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-D-- 77 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~~----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~-- 77 (157)
+++. +..+|++||+|+.+++.|++++...+ ++ ++++++.+|+.++++...+ ..++||+||+|+.. +
T Consensus 206 llk~-~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~---~~~~fDvII~D~~d~P~~ 281 (364)
T 2qfm_A 206 IVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---EGREFDYVINDLTAVPIS 281 (364)
T ss_dssp HHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---HTCCEEEEEEECCSSCCC
T ss_pred HHHC-CCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc---cCCCceEEEECCCCcccC
Confidence 4433 45899999999999999999986432 22 2799999999999986421 15689999999753 1
Q ss_pred ------ccHHHHHHH----HhcccCCeEEEEecc
Q 031568 78 ------NYCNYHERL----MKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ------~~~~~~~~~----~~~L~~gG~iv~~~~ 101 (157)
...++++.+ .++|+|||++++...
T Consensus 282 ~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~ 315 (364)
T 2qfm_A 282 TSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 315 (364)
T ss_dssp CC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcC
Confidence 124566666 899999999998743
No 51
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.28 E-value=3.2e-11 Score=87.34 Aligned_cols=93 Identities=10% Similarity=0.232 Sum_probs=75.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
.|..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+....+ +.++||.|++....+
T Consensus 49 ~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~d~v~~~~~~p~~~ 122 (213)
T 2fca_A 49 KGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVKRVYLNFSDPWPK 122 (213)
T ss_dssp TSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCCEEEEESCCCCCS
T ss_pred CCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCcCEEEEECCCCCcC
Confidence 3666777888889999999999999999999999999884 7999999998843223 256899998854211
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.+.|+|||.+++.
T Consensus 123 ~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 123 KRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp GGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 1467899999999999999875
No 52
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.28 E-value=1.6e-11 Score=92.42 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=75.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-+..++...+. +|+++|+++.+++.|++|++.+++.++++++++|+.+... .++||+|++|+.. ....
T Consensus 137 G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~fD~Vi~~~p~-~~~~ 206 (278)
T 2frn_A 137 GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVV-RTHE 206 (278)
T ss_dssp TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCS-SGGG
T ss_pred CHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCccEEEECCch-hHHH
Confidence 5556666665434 8999999999999999999999998789999999987643 4689999999764 3466
Q ss_pred HHHHHHhcccCCeEEEEeccc
Q 031568 82 YHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+++.+.+.|+|||++++....
T Consensus 207 ~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 207 FIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp GHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCCeEEEEEEee
Confidence 888999999999999986554
No 53
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.28 E-value=1.3e-10 Score=89.63 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=73.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
|.-+..++.. +.+|+++|+++.+++.|++|++.+++.+ +++++++|+.++++.+.. ..++||+|++|++.-
T Consensus 165 G~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~---~~~~fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 165 GVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER---RGSTYDIILTDPPKFGRG 239 (332)
T ss_dssp CHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---HTCCBSEEEECCCSEEEC
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh---cCCCceEEEECCccccCC
Confidence 4344444443 4599999999999999999999999875 599999999998765321 145899999998631
Q ss_pred ----------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 ----------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ----------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+..+++.+.++|+|||++++.+.
T Consensus 240 ~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 240 THGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp TTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 256788888999999999777543
No 54
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.28 E-value=2e-11 Score=96.11 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=74.6
Q ss_pred cccHHHHHhhCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCc-EEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKI-LQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|.-++.++...++ .+|+++|+++.+++.+++|++.+|++++ ++++.+|+.+++. .+ .++||+|++|+ ...
T Consensus 64 G~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~~fD~V~lDP-~g~ 136 (392)
T 3axs_A 64 GIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GFGFDYVDLDP-FGT 136 (392)
T ss_dssp SHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SSCEEEEEECC-SSC
T ss_pred cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CCCCcEEEECC-CcC
Confidence 4444455555444 7999999999999999999999999877 9999999999886 54 45799999998 333
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.++|++||++++.
T Consensus 137 ~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 137 PVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp CHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEE
Confidence 467899999999999988774
No 55
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.28 E-value=3.1e-11 Score=91.13 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=72.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..+++..+..+|+++|+++.+++.|++++...+ + .++++++.+|+.++++.. .++||+|++|...+
T Consensus 90 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 90 GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------TNTYDVIIVDSSDPI 163 (283)
T ss_dssp SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------CSCEEEEEEECCCTT
T ss_pred CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------CCCceEEEEcCCCCC
Confidence 4344445545568899999999999999999986542 2 368999999999987643 56899999987321
Q ss_pred ----c-c-HHHHHHHHhcccCCeEEEEec
Q 031568 78 ----N-Y-CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ----~-~-~~~~~~~~~~L~~gG~iv~~~ 100 (157)
. + .++++.+.+.|+|||++++..
T Consensus 164 ~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 164 GPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp TGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 1 1 688999999999999999864
No 56
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.28 E-value=1.7e-12 Score=95.58 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=73.9
Q ss_pred CcccHHHHHhh----CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcC
Q 031568 1 MHLPTKLFMTG----NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 1 ~g~st~~l~~~----~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~ 74 (157)
.|.+|..++.. .|+++|++||+++++++.|+ +..++++++++|+.+. ++.+ ...+||+|++|+
T Consensus 92 tG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~-----~~~~fD~I~~d~ 160 (236)
T 2bm8_A 92 NGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHL-----REMAHPLIFIDN 160 (236)
T ss_dssp TSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGG-----SSSCSSEEEEES
T ss_pred CCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhh-----ccCCCCEEEECC
Confidence 47888888876 68999999999999999887 2235899999999874 3433 134799999998
Q ss_pred CCcccHHHHHHHHh-cccCCeEEEEecc
Q 031568 75 DKDNYCNYHERLMK-LLKVGGIAVYDNT 101 (157)
Q Consensus 75 ~~~~~~~~~~~~~~-~L~~gG~iv~~~~ 101 (157)
....+..++..+.+ .|+|||++++++.
T Consensus 161 ~~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 AHANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred chHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 87778888999996 9999999999875
No 57
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.27 E-value=3.1e-11 Score=86.64 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=70.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~ 79 (157)
|..+..+++. ...+|+++|+++.+++.|++|++..++ ++++++++|+.+.++.. .++||+|++|+. ...+
T Consensus 66 G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~fD~V~~~~p~~~~~~ 137 (202)
T 2fpo_A 66 GALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPHNIVFVDPPFRRGLL 137 (202)
T ss_dssp CHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCEEEEEECCSSSTTTH
T ss_pred CHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCCCEEEECCCCCCCcH
Confidence 4344434443 346999999999999999999999988 58999999999876531 468999999986 2345
Q ss_pred HHHHHHHHh--cccCCeEEEEecc
Q 031568 80 CNYHERLMK--LLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~--~L~~gG~iv~~~~ 101 (157)
...++.+.+ +|+|||++++...
T Consensus 138 ~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 138 EETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCccCCCcEEEEEEC
Confidence 567777754 5999999988644
No 58
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.27 E-value=4.3e-11 Score=94.03 Aligned_cols=86 Identities=10% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------cc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NY 79 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------~~ 79 (157)
...+|+++|+++.+++.|++|++.+++.+ +++++.+|+.++++.+.. ...+||+|++|++.. .+
T Consensus 234 ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~ 310 (385)
T 2b78_A 234 GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---HHLTYDIIIIDPPSFARNKKEVFSVSKDY 310 (385)
T ss_dssp TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCC-----CCCCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH---hCCCccEEEECCCCCCCChhhHHHHHHHH
Confidence 34599999999999999999999999876 899999999998876532 135899999998641 13
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.+++..+.++|+|||++++...
T Consensus 311 ~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 311 HKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEeC
Confidence 4566777899999999998654
No 59
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.27 E-value=3.7e-11 Score=94.24 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=75.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-+..++.. ..+|+++|+++.+++.|++|++.+++. +++++.+|+.++++.+.. ..++||+|++|++.
T Consensus 221 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~---~~~~fD~Ii~dpP~~~~~~ 294 (382)
T 1wxx_A 221 GGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEK---EGERFDLVVLDPPAFAKGK 294 (382)
T ss_dssp THHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHH---TTCCEEEEEECCCCSCCST
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHh---cCCCeeEEEECCCCCCCCh
Confidence 4344445544 779999999999999999999999986 499999999998876532 14689999999864
Q ss_pred -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 -------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 -------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+..++..+.++|+|||++++..+
T Consensus 295 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 295 KDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp TSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3456788889999999999998654
No 60
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.26 E-value=2e-11 Score=88.08 Aligned_cols=92 Identities=14% Similarity=0.284 Sum_probs=75.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+.+++++|+++.+++.|+++++..++ ++++++.+|+.+....+ +.++||+|+++...+
T Consensus 53 G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~D~i~~~~~~~~~~~ 126 (214)
T 1yzh_A 53 GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEIDRLYLNFSDPWPKK 126 (214)
T ss_dssp SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCCSEEEEESCCCCCSG
T ss_pred CHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCCCEEEEECCCCcccc
Confidence 56667788888999999999999999999999999988 58999999998732112 246899999986432
Q ss_pred -------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.+.|+|||++++.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 127 RHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp GGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred chhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 2367899999999999999885
No 61
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.26 E-value=1.8e-11 Score=91.24 Aligned_cols=98 Identities=9% Similarity=0.094 Sum_probs=76.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-- 76 (157)
|.-++.++...|+.+|+++|+++++++.|++|++. +++.++++++++|+.+..+.........++||+|+++++.
T Consensus 48 G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~ 127 (260)
T 2ozv_A 48 GAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYND 127 (260)
T ss_dssp SHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC--
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcC
Confidence 55566677787889999999999999999999998 8887789999999988754210000024689999998532
Q ss_pred -------------------cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 -------------------DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 -------------------~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..+..+++.+.++|+|||.+++.
T Consensus 128 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 128 AGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp -------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 12567788899999999999873
No 62
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.26 E-value=1e-11 Score=88.29 Aligned_cols=93 Identities=10% Similarity=0.098 Sum_probs=74.6
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|..+..++... |.++|+++|+++.+++.|+++++..++.++++++.+|+.+..... .++||+|+++...
T Consensus 34 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~fD~v~~~~~~~~~~ 107 (197)
T 3eey_A 34 GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCPVKAVMFNLGYLPSG 107 (197)
T ss_dssp SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSCEEEEEEEESBCTTS
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCCceEEEEcCCcccCc
Confidence 55566666653 678999999999999999999999998779999999997754321 5789999998632
Q ss_pred --------cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 --------DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 --------~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+..+++.+.++|+|||.+++..
T Consensus 108 ~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 108 DHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp CTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 023568999999999999998753
No 63
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.25 E-value=1e-10 Score=87.66 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=73.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-+..++...|+.+|+++|+++.+++.|++|++..++. +++++.+|+.+.++ .++||+|+++++.
T Consensus 121 G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--------~~~fD~Iv~npPy~~~~~ 191 (276)
T 2b3t_A 121 GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--------GQQFAMIVSNPPYIDEQD 191 (276)
T ss_dssp SHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--------TCCEEEEEECCCCBCTTC
T ss_pred cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--------cCCccEEEECCCCCCccc
Confidence 445556676778999999999999999999999999886 79999999987532 4689999998532
Q ss_pred -----------------------cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 -----------------------DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 -----------------------~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+..+++.+.++|+|||++++..
T Consensus 192 ~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 192 PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 124567888889999999999863
No 64
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.25 E-value=4.4e-11 Score=100.45 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=76.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|.-++.++. ....+|+++|+++.+++.|++|++.+|+. ++++++++|+.++++.. .++||+|++|++.
T Consensus 551 G~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~------~~~fD~Ii~DPP~f~~~ 623 (703)
T 3v97_A 551 GSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA------NEQFDLIFIDPPTFSNS 623 (703)
T ss_dssp CHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC------CCCEEEEEECCCSBC--
T ss_pred hHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc------CCCccEEEECCccccCC
Confidence 433433443 34568999999999999999999999997 68999999999988753 5689999999853
Q ss_pred ----------cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 ----------DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ----------~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
..|.+++..+.++|+|||++++.+..
T Consensus 624 ~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 624 KRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp -----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 13566788889999999999987654
No 65
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.24 E-value=4e-11 Score=86.53 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=93.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..++...+..+++++|+++.+++.|++++...++.+ +++++.+|+... +. ..++||+|++.....
T Consensus 41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~~~fD~V~~~~~l~ 113 (219)
T 3jwg_A 41 GNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR-DK------RFSGYDAATVIEVIE 113 (219)
T ss_dssp CHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC-CG------GGTTCSEEEEESCGG
T ss_pred CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc-cc------ccCCCCEEEEHHHHH
Confidence 5555666666677899999999999999999998877754 899999998432 21 146899999865322
Q ss_pred -----ccHHHHHHHHhcccCCeEEEEecccCCcccc--CCCCC--CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCC
Q 031568 78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVA--VPEEQ--VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 148 (157)
Q Consensus 78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 148 (157)
....+++.+.+.|+|||+++.......+... .+... .+.+...-....++++.+.+....+|.....++|+
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~ 193 (219)
T 3jwg_A 114 HLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGE 193 (219)
T ss_dssp GCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCC
Confidence 2357889999999999988764322111111 01000 00000000345677777777777789888887765
Q ss_pred e
Q 031568 149 G 149 (157)
Q Consensus 149 G 149 (157)
+
T Consensus 194 ~ 194 (219)
T 3jwg_A 194 I 194 (219)
T ss_dssp C
T ss_pred c
Confidence 4
No 66
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.24 E-value=2.9e-11 Score=87.25 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=94.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..++...+..+++++|+++.+++.|++++...++.+ +++++.+|+... +. ..++||+|++.....
T Consensus 41 G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------~~~~fD~v~~~~~l~ 113 (217)
T 3jwh_A 41 GNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ-DK------RFHGYDAATVIEVIE 113 (217)
T ss_dssp CHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC-CG------GGCSCSEEEEESCGG
T ss_pred CHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc-cc------cCCCcCEEeeHHHHH
Confidence 5555666666677899999999999999999998888764 799999998432 11 136899999865322
Q ss_pred -----ccHHHHHHHHhcccCCeEEEEecccCCcccc--CCCCC--CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCC
Q 031568 78 -----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVA--VPEEQ--VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 148 (157)
Q Consensus 78 -----~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~ 148 (157)
....+++.+.+.|+|||++++......+... .+... .+.+...-..+.++++.+.+....+|.....++|+
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~ 193 (217)
T 3jwh_A 114 HLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGE 193 (217)
T ss_dssp GCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSC
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 3467889999999999988874321111100 00000 00010000345678888788888899999888775
Q ss_pred e
Q 031568 149 G 149 (157)
Q Consensus 149 G 149 (157)
.
T Consensus 194 ~ 194 (217)
T 3jwh_A 194 A 194 (217)
T ss_dssp C
T ss_pred c
Confidence 3
No 67
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.23 E-value=2.1e-10 Score=84.39 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH------cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..+..++...|+..+++||+++.+++.|+++++. .+. .+++++.+|+.+.++... +.++||.|++...
T Consensus 58 G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~----~~~~~D~v~~~~~ 132 (235)
T 3ckk_A 58 GGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF----YKGQLTKMFFLFP 132 (235)
T ss_dssp CHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC----CTTCEEEEEEESC
T ss_pred cHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC----CCcCeeEEEEeCC
Confidence 66677778788999999999999999999998865 344 479999999987555432 2578999998643
Q ss_pred Ccc-----------cHHHHHHHHhcccCCeEEEEe
Q 031568 76 KDN-----------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~~-----------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+. ...+++.+.+.|+|||.+++.
T Consensus 133 dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 133 DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp C-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 211 257899999999999999874
No 68
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.23 E-value=1.7e-11 Score=90.49 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=75.3
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++.. .|+++|+++|+++++++.|+++++..|+.++++++.+|+.+.++ .++||+|++|.. ...
T Consensus 105 G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~v~~~~~--~~~ 174 (255)
T 3mb5_A 105 GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--------EENVDHVILDLP--QPE 174 (255)
T ss_dssp SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--------CCSEEEEEECSS--CGG
T ss_pred hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--------CCCcCEEEECCC--CHH
Confidence 5566667776 68999999999999999999999999998779999999986532 567999999865 345
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+++.+.+.|+|||.+++..
T Consensus 175 ~~l~~~~~~L~~gG~l~~~~ 194 (255)
T 3mb5_A 175 RVVEHAAKALKPGGFFVAYT 194 (255)
T ss_dssp GGHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEE
Confidence 67899999999999999853
No 69
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.23 E-value=3.2e-11 Score=90.13 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=72.8
Q ss_pred cccHHHHHhhC--CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--
Q 031568 2 HLPTKLFMTGN--KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-- 77 (157)
Q Consensus 2 g~st~~l~~~~--~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-- 77 (157)
|..|..++... ++.+|++||+++.|++.|+++++..+...+++++++|+.+. +.++||+|++.....
T Consensus 82 G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~---------~~~~~d~v~~~~~l~~~ 152 (261)
T 4gek_A 82 GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---------AIENASMVVLNFTLQFL 152 (261)
T ss_dssp THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC---------CCCSEEEEEEESCGGGS
T ss_pred CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc---------cccccccceeeeeeeec
Confidence 55566677643 68899999999999999999999988888999999999763 246799999865321
Q ss_pred ---ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 ---NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ---~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||++++.+.
T Consensus 153 ~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 153 EPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 234678999999999999987543
No 70
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.23 E-value=7.8e-11 Score=92.41 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=75.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---------------CCCCcEEEEEccHHHHHHHHhhcCCCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---------------GVDHKINFIESEALSVLDQLLKYSENEGS 66 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---------------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~ 66 (157)
|.-++.++...++.+|+++|+++++++.+++|++.+ |+. +++++++|+.+.+... .++
T Consensus 59 G~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~~~------~~~ 131 (378)
T 2dul_A 59 GIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMAER------HRY 131 (378)
T ss_dssp SHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHHHS------TTC
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHHhc------cCC
Confidence 556666777667789999999999999999999999 875 4999999999987653 357
Q ss_pred eeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568 67 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 67 fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
||+|++|+.. ...++++.+.+.|++||++++.
T Consensus 132 fD~I~lDP~~-~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 132 FHFIDLDPFG-SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEeCCCC-CHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999843 3478899999999999988774
No 71
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=3.5e-11 Score=90.34 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=76.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-+..++...++++|+++|+++.+++.|++|++.+++. +++++.+|+.+. +. .++||+|++|++. .+.+
T Consensus 131 G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~~-------~~~~D~Vi~d~p~-~~~~ 200 (272)
T 3a27_A 131 GYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-EL-------KDVADRVIMGYVH-KTHK 200 (272)
T ss_dssp TTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-CC-------TTCEEEEEECCCS-SGGG
T ss_pred CHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-Cc-------cCCceEEEECCcc-cHHH
Confidence 556666777767889999999999999999999999986 688999999886 42 3579999999875 5677
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
++..+.+.|+|||++++...
T Consensus 201 ~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 201 FLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp GHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEEc
Confidence 88999999999999987543
No 72
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.22 E-value=9.8e-11 Score=80.95 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~ 80 (157)
|..+..++.. +.+|+++|+++.+++.|+++++..++ +++++++|+.+.++.... ..++||+|++++.. ....
T Consensus 53 G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~~D~i~~~~~~~~~~~ 125 (171)
T 1ws6_A 53 GAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKA---QGERFTVAFMAPPYAMDLA 125 (171)
T ss_dssp CHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHH---TTCCEEEEEECCCTTSCTT
T ss_pred CHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhc---cCCceEEEEECCCCchhHH
Confidence 4445555554 33499999999999999999999887 799999999987765431 13479999999643 4456
Q ss_pred HHHHHHH--hcccCCeEEEEecc
Q 031568 81 NYHERLM--KLLKVGGIAVYDNT 101 (157)
Q Consensus 81 ~~~~~~~--~~L~~gG~iv~~~~ 101 (157)
+.++.+. ++|+|||++++...
T Consensus 126 ~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 126 ALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHHHhhcccCCCcEEEEEeC
Confidence 6777777 99999999998644
No 73
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.22 E-value=1.9e-11 Score=92.12 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-++.+|. .+..+|+++|+||.+++.+++|++.+++.++++++++|+.++.+ .+.||.|+++.+.. ..+
T Consensus 137 G~~~i~~a~-~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~~D~Vi~~~p~~-~~~ 206 (278)
T 3k6r_A 137 GHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIADRILMGYVVR-THE 206 (278)
T ss_dssp TTTTHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCEEEEEECCCSS-GGG
T ss_pred cHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccCCCEEEECCCCc-HHH
Confidence 333333443 35679999999999999999999999999999999999987642 56899999997643 356
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+++.+.++|++||+|.+.
T Consensus 207 ~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 207 FIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp GHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 788899999999999764
No 74
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.22 E-value=1.8e-10 Score=80.78 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=75.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++... .+++++|+++.+++.++++++..+..++++++.+|+.+.++. .++||+|+++........
T Consensus 45 G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~D~v~~~~~~~~~~~ 115 (192)
T 1l3i_A 45 GGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-------IPDIDIAVVGGSGGELQE 115 (192)
T ss_dssp SHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-------SCCEEEEEESCCTTCHHH
T ss_pred CHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-------CCCCCEEEECCchHHHHH
Confidence 44444455443 899999999999999999999999867899999999885432 258999999987667788
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.++|+|||.+++...
T Consensus 116 ~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 116 ILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 99999999999999998643
No 75
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.21 E-value=1.3e-10 Score=91.54 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=70.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-++.++.. +++|+++|+++.+++.|++|++.+|+.. ++.++|+.++++.+ .+.||+|++|++.
T Consensus 226 G~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD~Ii~dpP~f~~~~ 295 (393)
T 4dmg_A 226 GGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFHHVLLDPPTLVKRP 295 (393)
T ss_dssp THHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEEEEEECCCCCCSSG
T ss_pred hHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCCEEEECCCcCCCCH
Confidence 4444444443 5569999999999999999999999864 45699999988754 3349999999864
Q ss_pred -------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 -------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 -------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+..+++.+.++|+|||++++..+
T Consensus 296 ~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 296 EELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp GGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2456788889999999999996544
No 76
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.19 E-value=6.8e-11 Score=86.54 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=75.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~ 80 (157)
|+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.++. .++||.|++.+ ...-..
T Consensus 27 G~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-------~~~~D~IviaG~Gg~~i~ 99 (225)
T 3kr9_A 27 AYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-------TDQVSVITIAGMGGRLIA 99 (225)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-------CcCCCEEEEcCCChHHHH
Confidence 5556666767788999999999999999999999999988999999999876531 22699999754 222356
Q ss_pred HHHHHHHhcccCCeEEEEecc
Q 031568 81 NYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~ 101 (157)
++++.+...|+++|.+|+...
T Consensus 100 ~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 100 RILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp HHHHHTGGGCTTCCEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEECC
Confidence 788888899999999998643
No 77
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.19 E-value=1.6e-10 Score=83.89 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=69.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++... +.+|+++|+++.+++.|++|++.+++ +++++.+|+.... .+ ..++||+|+++++..
T Consensus 68 G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-~~-----~~~~fD~I~~npp~~~~~~ 138 (230)
T 3evz_A 68 AMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIK-GV-----VEGTFDVIFSAPPYYDKPL 138 (230)
T ss_dssp CHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSST-TT-----CCSCEEEEEECCCCC----
T ss_pred HHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhh-hc-----ccCceeEEEECCCCcCCcc
Confidence 44555555554 78999999999999999999999987 7999999974321 12 247899999986421
Q ss_pred ------------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ------------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ------------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.++|+|||.+++-
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 139 GRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp -----------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 1367889999999999999884
No 78
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=99.17 E-value=6.9e-10 Score=86.39 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=74.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
=|+.++...+++.|+++|+++..++..++|+++.+.. .++++...|+..+-+.. .+.||.|++|++++.
T Consensus 162 KT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~------~~~fD~VLlDaPCSg 235 (359)
T 4fzv_A 162 KTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE------GDTYDRVLVDVPCTT 235 (359)
T ss_dssp HHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS------TTCEEEEEEECCCCC
T ss_pred HHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc------cccCCEEEECCccCC
Confidence 3556666667789999999999999999999998753 47999999998764432 568999999986432
Q ss_pred ---------------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 ---------------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ---------------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
-.++++.+.++|+|||+||+.++..
T Consensus 236 ~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 236 DRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp HHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 0246777889999999999988864
No 79
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.17 E-value=1.1e-10 Score=83.39 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=75.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...|+.+++++|+++.+++.|+++++..++. +++++.+|+.+..+ .++||+|++... ..+..
T Consensus 77 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--------~~~~D~i~~~~~-~~~~~ 146 (207)
T 1jsx_A 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EPPFDGVISRAF-ASLND 146 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CSCEEEEECSCS-SSHHH
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCc--------cCCcCEEEEecc-CCHHH
Confidence 666777777778999999999999999999999999886 49999999987431 468999998753 45788
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+++.+.++|+|||.+++.
T Consensus 147 ~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 147 MVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp HHHHHTTSEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 999999999999999985
No 80
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.16 E-value=1.2e-10 Score=85.45 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=75.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~ 80 (157)
|+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.+.. .++||.|++.+ ...-..
T Consensus 33 G~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-------~~~~D~IviaGmGg~lI~ 105 (230)
T 3lec_A 33 AYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-------ADNIDTITICGMGGRLIA 105 (230)
T ss_dssp THHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-------ccccCEEEEeCCchHHHH
Confidence 5555666666678899999999999999999999999998999999999886531 23699998754 223456
Q ss_pred HHHHHHHhcccCCeEEEEecc
Q 031568 81 NYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~ 101 (157)
++++...+.|+++|.+|....
T Consensus 106 ~IL~~~~~~l~~~~~lIlqp~ 126 (230)
T 3lec_A 106 DILNNDIDKLQHVKTLVLQPN 126 (230)
T ss_dssp HHHHHTGGGGTTCCEEEEEES
T ss_pred HHHHHHHHHhCcCCEEEEECC
Confidence 778888889999999998643
No 81
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.15 E-value=5.2e-10 Score=78.51 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=71.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--- 77 (157)
|..+..++.. +.+++++|+++.+++.|++++...++.+ +++++.+|+.+.++ .++||+|++++...
T Consensus 64 G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v~~~~~~~~~~ 133 (194)
T 1dus_A 64 GVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--------DRKYNKIITNPPIRAGK 133 (194)
T ss_dssp SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--------TSCEEEEEECCCSTTCH
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--------cCCceEEEECCCcccch
Confidence 3344444444 7899999999999999999999988864 59999999987432 46899999987532
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.++|+|||.+++...
T Consensus 134 ~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 134 EVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 345788889999999999998654
No 82
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.14 E-value=9.4e-11 Score=91.66 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=72.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~ 79 (157)
|..+..++...+..+|+++|+++.+++.|++|++++|+. +++++.+|+.+.++.. ..++||+|++|++.. ..
T Consensus 183 G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~Vi~~~p~~~~~~ 256 (373)
T 2qm3_A 183 DLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDTFITDPPETLEAI 256 (373)
T ss_dssp TCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSEEEECCCSSHHHH
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccEEEECCCCchHHH
Confidence 555666666667789999999999999999999999987 8999999998744321 135899999997532 24
Q ss_pred HHHHHHHHhcccCCe-EEEEe
Q 031568 80 CNYHERLMKLLKVGG-IAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG-~iv~~ 99 (157)
..+++.+.+.|+||| ++++.
T Consensus 257 ~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 257 RAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp HHHHHHHHHTBCSTTCEEEEE
T ss_pred HHHHHHHHHHcccCCeEEEEE
Confidence 577888999999999 44554
No 83
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.14 E-value=1.4e-10 Score=85.40 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=76.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~ 79 (157)
|..+..++...+ .+|+++|+++.+++.|++++...++.++++++.+|+.+. + + +.++||+|++..... ..
T Consensus 58 G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 129 (257)
T 3f4k_A 58 GGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F-----QNEELDLIWSEGAIYNIGF 129 (257)
T ss_dssp SHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S-----CTTCEEEEEEESCSCCCCH
T ss_pred CHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C-----CCCCEEEEEecChHhhcCH
Confidence 556666777665 499999999999999999999999988899999999653 2 1 257899999875322 46
Q ss_pred HHHHHHHHhcccCCeEEEEecccC
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+++.+.++|+|||++++.+..|
T Consensus 130 ~~~l~~~~~~L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 130 ERGMNEWSKYLKKGGFIAVSEASW 153 (257)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeec
Confidence 788999999999999999976544
No 84
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=99.13 E-value=1.3e-10 Score=88.09 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=69.1
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHc--C-C-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------ 77 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~-~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------ 77 (157)
+++..+..+|+.||+||..++.+++++... + + ++|++++.+|+.+++... .++||+|++|...+
T Consensus 101 vlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~------~~~yDvIi~D~~dp~~~~~~ 174 (294)
T 3o4f_A 101 VTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT------SQTFDVIISDCTDPIGPGES 174 (294)
T ss_dssp HHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS------SCCEEEEEESCCCCCCTTCC
T ss_pred HHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc------cccCCEEEEeCCCcCCCchh
Confidence 333445789999999999999999998642 2 1 478999999999998642 57899999997422
Q ss_pred -ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...++++.+.+.|+|||++++.
T Consensus 175 L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 175 LFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp SSCCHHHHHHHHTEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHhCCCCEEEEe
Confidence 2357899999999999999985
No 85
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.13 E-value=1e-10 Score=91.66 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=74.3
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCC--cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~--~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~- 77 (157)
.|.-+..++...|+.+|+++|+++.+++.|++|++.+++.+ +++++.+|+.+.++ .++||+|+++++..
T Consensus 233 ~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------~~~fD~Ii~nppfh~ 304 (375)
T 4dcm_A 233 NGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRFNAVLCNPPFHQ 304 (375)
T ss_dssp TCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------TTCEEEEEECCCC--
T ss_pred chHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------CCCeeEEEECCCccc
Confidence 36667777888899999999999999999999999998754 58889999987432 56899999987522
Q ss_pred -------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+++-
T Consensus 305 ~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 305 QHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp -----CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1236789999999999999883
No 86
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.13 E-value=3.4e-10 Score=85.64 Aligned_cols=91 Identities=5% Similarity=0.087 Sum_probs=74.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++...+ .+|+++|+++++++.|++++...++.++++++.+|+.+. .++||+|++....
T Consensus 84 G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD~v~~~~~~~~~~d 152 (302)
T 3hem_A 84 GSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------DEPVDRIVSLGAFEHFAD 152 (302)
T ss_dssp SHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------CCCCSEEEEESCGGGTTC
T ss_pred cHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----------CCCccEEEEcchHHhcCc
Confidence 444555665544 899999999999999999999999988999999999764 3689999986422
Q ss_pred -------cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 77 -------DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 77 -------~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+..+++.+.++|+|||.+++..+..
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 153 GAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp CSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 334788999999999999999876543
No 87
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.13 E-value=9.7e-11 Score=87.76 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=74.2
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++.. .|+++|+++|+++.+++.|++|++..++.++++++.+|+.+.++ .++||+|++|.. ...
T Consensus 124 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~D~V~~~~~--~~~ 193 (277)
T 1o54_A 124 GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--------EKDVDALFLDVP--DPW 193 (277)
T ss_dssp SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--------CCSEEEEEECCS--CGG
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--------CCccCEEEECCc--CHH
Confidence 4555666666 57899999999999999999999999887789999999987632 467999999864 345
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+++.+.+.|+|||.+++..
T Consensus 194 ~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 194 NYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp GTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEe
Confidence 67889999999999999854
No 88
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.13 E-value=2.6e-10 Score=86.85 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=70.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..+..++...+..+|+++|+++.+++.|++++.. ....++++++.+|+.+++... ..++||+|++|.....
T Consensus 107 G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~fDvIi~d~~~~~ 181 (304)
T 3bwc_A 107 GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PDNTYDVVIIDTTDPA 181 (304)
T ss_dssp SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CTTCEEEEEEECC---
T ss_pred CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cCCceeEEEECCCCcc
Confidence 44444455555678999999999999999998843 222468999999999886531 1568999999874322
Q ss_pred -------cHHHHHHHHhcccCCeEEEEe
Q 031568 79 -------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 -------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++.+.+.|+|||++++.
T Consensus 182 ~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 209 (304)
T 3bwc_A 182 GPASKLFGEAFYKDVLRILKPDGICCNQ 209 (304)
T ss_dssp ------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 157899999999999999986
No 89
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.13 E-value=2.5e-09 Score=74.38 Aligned_cols=86 Identities=22% Similarity=0.138 Sum_probs=70.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++. ++.+++++|+++.+++.|+++++..++ ++++++.+|+.+.++ .++||+|+++.. .....
T Consensus 47 G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~D~i~~~~~-~~~~~ 114 (183)
T 2yxd_A 47 GGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLD--------KLEFNKAFIGGT-KNIEK 114 (183)
T ss_dssp SHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGG--------GCCCSEEEECSC-SCHHH
T ss_pred CHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCcccccc--------CCCCcEEEECCc-ccHHH
Confidence 434444444 789999999999999999999999988 479999999988432 468999999887 66778
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.++ |||.+++...
T Consensus 115 ~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 115 IIEILDKK--KINHIVANTI 132 (183)
T ss_dssp HHHHHHHT--TCCEEEEEES
T ss_pred HHHHHhhC--CCCEEEEEec
Confidence 88888877 9999998653
No 90
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.12 E-value=1.7e-10 Score=84.98 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=75.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|+++.+++.|+++++..|+.++++++.+|+.+... .++||+|++... .+.
T Consensus 48 G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD~V~~~~~~~~~~~ 118 (256)
T 1nkv_A 48 GEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA--------NEKCDVAACVGATWIAGG 118 (256)
T ss_dssp CHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC--------SSCEEEEEEESCGGGTSS
T ss_pred CHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc--------CCCCCEEEECCChHhcCC
Confidence 55566666665 779999999999999999999999988799999999976421 468999998542 224
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....++.+.+.|+|||.+++.+..+
T Consensus 119 ~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 119 FAGAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp SHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEecCcc
Confidence 6788999999999999999865443
No 91
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.12 E-value=3.6e-10 Score=85.33 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=71.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce---eEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF---DYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f---D~I~iD~~~~~ 78 (157)
|.-+..++.. |+.+|+++|+++++++.|++|++..++.++++++++|+.+.++ ++| |+|+++++.-.
T Consensus 135 G~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---------~~f~~~D~IvsnPPyi~ 204 (284)
T 1nv8_A 135 GAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---------EKFASIEMILSNPPYVK 204 (284)
T ss_dssp SHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---------GGTTTCCEEEECCCCBC
T ss_pred hHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---------cccCCCCEEEEcCCCCC
Confidence 4445556667 8999999999999999999999999998789999999987532 368 99999864211
Q ss_pred ----------------------cHHHHHHHH-hcccCCeEEEEe
Q 031568 79 ----------------------YCNYHERLM-KLLKVGGIAVYD 99 (157)
Q Consensus 79 ----------------------~~~~~~~~~-~~L~~gG~iv~~ 99 (157)
...+++.+. +.|+|||+++++
T Consensus 205 ~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 205 SSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 126788899 999999999985
No 92
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.12 E-value=4.4e-11 Score=90.84 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=73.7
Q ss_pred cccHHHHH-hhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFM-TGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~-~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|..+..++ +..|+.+|+++|+++.+++.|++++...++.++++++.+|+.+. + + .++||+|++....
T Consensus 130 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~------~~~fD~v~~~~~~~~~~ 201 (305)
T 3ocj_A 130 MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-T------REGYDLLTSNGLNIYEP 201 (305)
T ss_dssp CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-C------CSCEEEEECCSSGGGCC
T ss_pred CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-c------cCCeEEEEECChhhhcC
Confidence 44444454 35689999999999999999999999999888899999999874 1 1 3789999986522
Q ss_pred --cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.+.|+|||.+++.+..
T Consensus 202 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 229 (305)
T 3ocj_A 202 DDARVTELYRRFWQALKPGGALVTSFLT 229 (305)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 12234789999999999999997654
No 93
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.12 E-value=1.5e-10 Score=86.10 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=76.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~ 79 (157)
|..+..++.. ++++|+++|+++.+++.|+++++..++.++++++.+|+.+. + + +.++||+|++..... ..
T Consensus 58 G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~i~~~~~~~~~~~ 129 (267)
T 3kkz_A 58 GGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P-F-----RNEELDLIWSEGAIYNIGF 129 (267)
T ss_dssp CHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEEEEEESSCGGGTCH
T ss_pred CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C-C-----CCCCEEEEEEcCCceecCH
Confidence 4455555555 78899999999999999999999999988899999999763 2 1 257899999875321 45
Q ss_pred HHHHHHHHhcccCCeEEEEecccC
Q 031568 80 CNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..+++.+.++|+|||++++.+..+
T Consensus 130 ~~~l~~~~~~LkpgG~l~~~~~~~ 153 (267)
T 3kkz_A 130 ERGLNEWRKYLKKGGYLAVSECSW 153 (267)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEEeee
Confidence 778999999999999999976654
No 94
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.11 E-value=2.6e-10 Score=84.10 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=74.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 73 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD 73 (157)
|..+..++...|+.+|++||+++.+++.|+++++.. ++. +++++.+|+.+.++... ..+++|.|++.
T Consensus 61 G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~----~~~~~d~v~~~ 135 (246)
T 2vdv_E 61 GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF----EKGQLSKMFFC 135 (246)
T ss_dssp SHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS----CTTCEEEEEEE
T ss_pred CHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc----cccccCEEEEE
Confidence 556677777878899999999999999999999876 664 79999999987655321 25689999876
Q ss_pred CCCcc-----------cHHHHHHHHhcccCCeEEEEe
Q 031568 74 ADKDN-----------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 74 ~~~~~-----------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+.+. +..+++.+.++|+|||++++.
T Consensus 136 ~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 136 FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 43221 257899999999999999873
No 95
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.11 E-value=2.2e-09 Score=82.08 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=71.1
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|--|+.++.. .+.++|+++|+++.+++.+++|++++|+. +++++.+|+.+..+... ..++||.|++|++...
T Consensus 114 G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~----~~~~fD~Vl~D~PcSg~G 188 (309)
T 2b9e_A 114 GNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDP----RYHEVHYILLDPSCSGSG 188 (309)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCG----GGTTEEEEEECCCCCC--
T ss_pred hHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCcccc----ccCCCCEEEEcCCcCCCC
Confidence 5556667764 46799999999999999999999999985 79999999987532110 0147999999975311
Q ss_pred -------------------------cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 -------------------------YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 -------------------------~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
..++++.+.++++ ||.+++..+..
T Consensus 189 ~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 189 MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 0134666667776 99999987754
No 96
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.11 E-value=2.5e-10 Score=84.37 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=74.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~~~~~ 80 (157)
|+-++.++...|..+|+++|+++.+++.|++|++.+|+.++|+++.+|+.+.+.. .++||.|++.+ ...-..
T Consensus 33 G~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-------~~~~D~IviagmGg~lI~ 105 (244)
T 3gnl_A 33 AYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-------KDAIDTIVIAGMGGTLIR 105 (244)
T ss_dssp THHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-------GGCCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-------cccccEEEEeCCchHHHH
Confidence 4455566666678899999999999999999999999988999999999886531 23599998743 333466
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
++++...+.|++++.+|+..
T Consensus 106 ~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 106 TILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp HHHHHTGGGGTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEc
Confidence 78888889999999999864
No 97
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.10 E-value=2.3e-10 Score=81.94 Aligned_cols=93 Identities=15% Similarity=0.286 Sum_probs=75.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. ++.+++++|+++.+++.|+++++..++.++++++.+|+.+. + + +.++||+|++.... ..
T Consensus 55 G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~l~~~~~ 126 (219)
T 3dlc_A 55 GALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-I-----EDNYADLIVSRGSVFFWED 126 (219)
T ss_dssp SHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-S-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-C-----CcccccEEEECchHhhccC
Confidence 4455556666 78899999999999999999999999888999999999763 2 1 25789999997632 34
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++.+..
T Consensus 127 ~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 127 VATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Confidence 578899999999999999986543
No 98
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.10 E-value=5.9e-10 Score=79.62 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=72.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++ ..+..+|+++|+++.+++.|++++...+..+ ++++.+|+.+.. .++||+|+++.....+..
T Consensus 72 G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~---------~~~fD~i~~~~~~~~~~~ 140 (205)
T 3grz_A 72 GILAIAAH-KLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV---------DGKFDLIVANILAEILLD 140 (205)
T ss_dssp SHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC---------CSCEEEEEEESCHHHHHH
T ss_pred CHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC---------CCCceEEEECCcHHHHHH
Confidence 44444544 4467799999999999999999999998864 999999997632 578999999986655667
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
+++.+.++|+|||.+++...
T Consensus 141 ~l~~~~~~L~~gG~l~~~~~ 160 (205)
T 3grz_A 141 LIPQLDSHLNEDGQVIFSGI 160 (205)
T ss_dssp HGGGSGGGEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEec
Confidence 78888899999999998644
No 99
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.09 E-value=2.1e-10 Score=82.16 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=69.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..|..++.. +.+|+++|+++++++.|+++++..++. +++++.+|+.+..+. .++||+|+++.......
T Consensus 89 G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~~D~i~~~~~~~~~~- 157 (210)
T 3lbf_A 89 GYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQA-------RAPFDAIIVTAAPPEIP- 157 (210)
T ss_dssp SHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEESSBCSSCC-
T ss_pred CHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCcc-------CCCccEEEEccchhhhh-
Confidence 5666666666 789999999999999999999999886 799999999875432 46899999987554433
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+.+.+.|+|||.+++.
T Consensus 158 --~~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 158 --TALMTQLDEGGILVLP 173 (210)
T ss_dssp --THHHHTEEEEEEEEEE
T ss_pred --HHHHHhcccCcEEEEE
Confidence 3678899999999985
No 100
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.09 E-value=2.3e-09 Score=79.54 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=70.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-+..++.. +.+|+++|+++.+++.|++|++.+++. ++++.+|+.+.++ .++||+|+++........
T Consensus 132 G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~~fD~Vv~n~~~~~~~~ 199 (254)
T 2nxc_A 132 GVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FGPFDLLVANLYAELHAA 199 (254)
T ss_dssp SHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GCCEEEEEEECCHHHHHH
T ss_pred cHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CCCCCEEEECCcHHHHHH
Confidence 3334344433 339999999999999999999998875 8999999987532 468999999876555677
Q ss_pred HHHHHHhcccCCeEEEEeccc
Q 031568 82 YHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+++.+.++|+|||.+++..+.
T Consensus 200 ~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 200 LAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEeec
Confidence 888999999999999986543
No 101
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.08 E-value=2.4e-10 Score=83.59 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=69.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++. .+..+|+++|+++.+++.|+++.+..+ .+++++.+|+.+.++.+ ++++||+|++|...
T Consensus 72 G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~-----~~~~fD~V~~d~~~~~~~~ 143 (236)
T 1zx0_A 72 AIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL-----PDGHFDGILYDTYPLSEET 143 (236)
T ss_dssp SHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS-----CTTCEEEEEECCCCCBGGG
T ss_pred CHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc-----CCCceEEEEECCcccchhh
Confidence 555555643 345599999999999999999988776 47999999999865433 25789999994321
Q ss_pred ---cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 ---DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ---~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.++|+|||++++-+..
T Consensus 144 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 144 WHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 11235688899999999999976543
No 102
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.08 E-value=2.1e-10 Score=86.71 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=73.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC-----------------------------------------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD----------------------------------------- 40 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~----------------------------------------- 40 (157)
|..|..++..+++.+|+++|+++.+++.|+++++..+..
T Consensus 58 G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ 137 (292)
T 3g07_A 58 GHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPI 137 (292)
T ss_dssp CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------------------
T ss_pred CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhccCcc
Confidence 667777888888899999999999999999998765432
Q ss_pred ----------------CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---------cccHHHHHHHHhcccCCeE
Q 031568 41 ----------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGI 95 (157)
Q Consensus 41 ----------------~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---------~~~~~~~~~~~~~L~~gG~ 95 (157)
++++++.+|+.+....+.. ...++||+|++.... .....+++.+.++|+|||+
T Consensus 138 ~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~ 215 (292)
T 3g07_A 138 AAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGI 215 (292)
T ss_dssp ----CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 5899999998743211110 025789999987642 1345678899999999999
Q ss_pred EEEecccCC
Q 031568 96 AVYDNTLWG 104 (157)
Q Consensus 96 iv~~~~~~~ 104 (157)
+++....|.
T Consensus 216 lil~~~~~~ 224 (292)
T 3g07_A 216 LVLEPQPWS 224 (292)
T ss_dssp EEEECCCHH
T ss_pred EEEecCCch
Confidence 999765553
No 103
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.08 E-value=3.9e-10 Score=84.55 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. +.+|+++|+++.+++.|+++++..++.++++++.+|+.+..+ + ..++||+|++.... +.
T Consensus 80 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~-----~~~~fD~v~~~~~l~~~~~ 151 (285)
T 4htf_A 80 GQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-H-----LETPVDLILFHAVLEWVAD 151 (285)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-G-----CSSCEEEEEEESCGGGCSC
T ss_pred hHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-h-----cCCCceEEEECchhhcccC
Confidence 4444445544 789999999999999999999999987799999999987642 2 25789999987532 34
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.++|+|||++++..
T Consensus 152 ~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 152 PRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEE
Confidence 5788999999999999999854
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.07 E-value=6.7e-11 Score=84.51 Aligned_cols=93 Identities=9% Similarity=0.085 Sum_probs=54.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..++...++.+++++|+++.+++.|++++...+. +++++++|+.+.++.... ..++||+|+++++...
T Consensus 42 G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~fD~i~~npp~~~~~~ 116 (215)
T 4dzr_A 42 GCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAE---RGRPWHAIVSNPPYIPTGE 116 (215)
T ss_dssp CHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHH---TTCCBSEEEECCCCCC---
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhh---ccCcccEEEECCCCCCCcc
Confidence 55566677777889999999999999999999998877 799999999986653110 1378999999753210
Q ss_pred --------------------------cHHHHHHHHhcccCCeE-EEEe
Q 031568 79 --------------------------YCNYHERLMKLLKVGGI-AVYD 99 (157)
Q Consensus 79 --------------------------~~~~~~~~~~~L~~gG~-iv~~ 99 (157)
+..+++.+.++|+|||+ +++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 117 IDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp ---------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred ccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 15566777789999999 6654
No 105
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.07 E-value=2.2e-09 Score=84.53 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=89.6
Q ss_pred cccHHHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCCC--
Q 031568 2 HLPTKLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDADK-- 76 (157)
Q Consensus 2 g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~~-- 76 (157)
|.+++.+++ .+|+++|+++|+++.+. . ..++++++++|+.+. ...+.. ..++||+|++|...
T Consensus 234 GG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~---~d~sFDlVisdgsH~~ 300 (419)
T 3sso_A 234 GGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR---RYGPFDIVIDDGSHIN 300 (419)
T ss_dssp CCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH---HHCCEEEEEECSCCCH
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc---ccCCccEEEECCcccc
Confidence 345556665 45899999999999972 1 235899999999763 222211 03689999998754
Q ss_pred cccHHHHHHHHhcccCCeEEEEecccCCccccC-CCCCCCCCcccchHHHHHHHHHHhhcC---------CCee---EEe
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV-PEEQVPDHFRGSSRQAILDLNRSLADD---------PRVQ---LSH 143 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~---~~~ 143 (157)
......|+.+.++|||||+++++++..+..... +....+....+ +.+.++++...+... |.+. ..-
T Consensus 301 ~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~t-ii~~lk~l~D~l~~~~~~~~~~~~~~~~~~~~~~ 379 (419)
T 3sso_A 301 AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGT-SLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVG 379 (419)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTS-HHHHHHHHHHHHTGGGSCCCTTCCCCHHHHHEEE
T ss_pred hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhH-HHHHHHHHHHHhcccccCCCcCCCCCccccceeE
Confidence 235677999999999999999988763211111 10000011122 777788887766531 2221 344
Q ss_pred eecCCeeEEEEEe
Q 031568 144 VALGDGITICRRI 156 (157)
Q Consensus 144 ~p~~~G~~v~~~~ 156 (157)
+.+-++|.+..|.
T Consensus 380 ~h~y~~i~~~~kg 392 (419)
T 3sso_A 380 LHVYHNVAFVEKG 392 (419)
T ss_dssp EEEETTEEEEEES
T ss_pred EEecCcEEEEEec
Confidence 6677888777764
No 106
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.07 E-value=5.6e-11 Score=88.88 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=65.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..+..+++. + .+|+++|+++.+++.|++++... ++ .++++++.+|+.+++ ++||+|++|...+
T Consensus 84 G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------~~fD~Ii~d~~dp- 150 (262)
T 2cmg_A 84 LELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------KKYDLIFCLQEPD- 150 (262)
T ss_dssp HHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------CCEEEEEESSCCC-
T ss_pred CHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------hhCCEEEECCCCh-
Confidence 3334444545 6 99999999999999999987541 22 358999999998753 4799999997533
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..+++.+.+.|+|||++++.
T Consensus 151 -~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 151 -IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp -HHHHHHHHTTEEEEEEEEEE
T ss_pred -HHHHHHHHHhcCCCcEEEEE
Confidence 45899999999999999985
No 107
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=99.06 E-value=8e-10 Score=82.41 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=70.7
Q ss_pred CcccHHHHHhh-------CCC-----cEEEEEeCCh--------------hHHHHHHHHHHHc----------CCC---C
Q 031568 1 MHLPTKLFMTG-------NKI-----LQITAIDVNR--------------ETYEIGLPIIKKA----------GVD---H 41 (157)
Q Consensus 1 ~g~st~~l~~~-------~~~-----~~v~~ve~~~--------------~~~~~a~~~~~~~----------~~~---~ 41 (157)
||++++.++.. .|+ .+++++|.+| +..+.|+++++.. .+. .
T Consensus 71 tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~r~~~~~~~~ 150 (257)
T 2qy6_A 71 TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRV 150 (257)
T ss_dssp TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEEEEEEC--CE
T ss_pred hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchhheeccCCce
Confidence 68888886653 564 5899999987 4555778887752 121 3
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+++++.||+.+.++.+... ...+||+||+|+..+ .+.++++.+.++|+|||+++.
T Consensus 151 ~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 151 TLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 6889999999998865200 012799999997322 267899999999999999986
No 108
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=99.06 E-value=3e-09 Score=79.13 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=70.4
Q ss_pred HcCC-CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-cccHHHHHHHHhcccCCeEEEEecccCCccccCCCCC
Q 031568 36 KAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQ 113 (157)
Q Consensus 36 ~~~~-~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-~~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~ 113 (157)
..|. .++|+++.|++.+.++.+.+. .+.++||+|++|+++ ..+..+++.+.++|+|||+|++||....+
T Consensus 152 ~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~-------- 222 (257)
T 3tos_A 152 FFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK-------- 222 (257)
T ss_dssp TTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT--------
T ss_pred hcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC--------
Confidence 4565 478999999999999876321 123479999999986 34566899999999999999999964211
Q ss_pred CCCCcccchHHHHHHHHHHhhcCCCeeEEeeecCCeeEEE
Q 031568 114 VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 153 (157)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~v~ 153 (157)
+ ..+++.++.+....+.....+|++.+....
T Consensus 223 w---------~G~~~A~~ef~~~~~~~i~~~p~~~~~~y~ 253 (257)
T 3tos_A 223 W---------PGENIAMRKVLGLDHAPLRLLPGRPAPAYL 253 (257)
T ss_dssp C---------THHHHHHHHHTCTTSSCCEECTTCSCCEEE
T ss_pred C---------hHHHHHHHHHHhhCCCeEEEccCCCCCEEE
Confidence 1 134444444455556677788888766443
No 109
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.06 E-value=5.4e-10 Score=83.24 Aligned_cols=94 Identities=24% Similarity=0.298 Sum_probs=76.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++...|+.+++++|+++.+++.|++++...+.. +++++.+|+.+.. + +.++||+|++... .+.
T Consensus 49 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~~fD~v~~~~~l~~~~~ 120 (276)
T 3mgg_A 49 GAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP--F-----EDSSFDHIFVCFVLEHLQS 120 (276)
T ss_dssp SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC--S-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC--C-----CCCCeeEEEEechhhhcCC
Confidence 555666777778999999999999999999999998885 7999999998642 1 2578999998753 234
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.++|+|||++++.....
T Consensus 121 ~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (276)
T 3mgg_A 121 PEEALKSLKKVLKPGGTITVIEGDH 145 (276)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred HHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 5688999999999999999865433
No 110
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=99.06 E-value=2.3e-09 Score=83.64 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=87.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC---C----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG---V----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~---~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
++.-+.+.+..+|+.||+||+.++.|++++.... . .+|++++.+|+.+++++..+. .++||+|++|....
T Consensus 219 ~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~---~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 219 ILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE---GREFDYVINDLTAV 295 (381)
T ss_dssp HHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---TCCEEEEEEECCSS
T ss_pred HHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc---cCceeEEEECCCCC
Confidence 3333335567899999999999999999874311 1 246999999999999865321 46899999995210
Q ss_pred -------------ccHHHHHHHHhcccCCeEEEEecccCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC-CCee---
Q 031568 78 -------------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD-PRVQ--- 140 (157)
Q Consensus 78 -------------~~~~~~~~~~~~L~~gG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--- 140 (157)
...++++.+.+.|+|||+++...-.. . ..+.+..+.+.++.- +.+.
T Consensus 296 ~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~----~-------------~~~~~~~i~~tl~~vF~~v~~~~ 358 (381)
T 3c6k_A 296 PISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV----N-------------LTEALSLYEEQLGRLYCPVEFSK 358 (381)
T ss_dssp CCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET----T-------------CHHHHHHHHHHHTTSSSCEEEEE
T ss_pred cccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC----c-------------chhHHHHHHHHHHHhCCcceEee
Confidence 12567888999999999999852110 0 223445555555542 3332
Q ss_pred -EEeeec---CCeeEEEEEe
Q 031568 141 -LSHVAL---GDGITICRRI 156 (157)
Q Consensus 141 -~~~~p~---~~G~~v~~~~ 156 (157)
.+.+|. .+|+.++-|.
T Consensus 359 ~~~~VPSy~~~W~F~~aSK~ 378 (381)
T 3c6k_A 359 EIVCVPSYLELWVFYTVWKK 378 (381)
T ss_dssp EEECCGGGSSCEEEEEEEEC
T ss_pred EEEEecCCCCceeeeEEECC
Confidence 233453 5788888774
No 111
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.05 E-value=4.4e-10 Score=82.78 Aligned_cols=89 Identities=11% Similarity=0.021 Sum_probs=72.2
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|..+..++.. .|+.+|+++|+++.+++.|+++++.. | .++++++.+|+.+. + + +.++||+|++|.. ..
T Consensus 108 G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~-~-~-----~~~~~D~v~~~~~--~~ 177 (258)
T 2pwy_A 108 GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA-E-L-----EEAAYDGVALDLM--EP 177 (258)
T ss_dssp SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC-C-C-----CTTCEEEEEEESS--CG
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc-C-C-----CCCCcCEEEECCc--CH
Confidence 5556666665 57899999999999999999999988 7 45899999999875 1 1 1467999999864 34
Q ss_pred HHHHHHHHhcccCCeEEEEec
Q 031568 80 CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+++.+.+.|+|||.+++..
T Consensus 178 ~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 178 WKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp GGGHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEe
Confidence 567899999999999998843
No 112
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.04 E-value=3.4e-10 Score=84.81 Aligned_cols=88 Identities=10% Similarity=0.207 Sum_probs=72.2
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|..+..++.. .|+.+|+++|+++.+++.|+++++.. |. ++++++.+|+.+.+ +.++||+|++|.. ..
T Consensus 122 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~--------~~~~fD~Vi~~~~--~~ 190 (275)
T 1yb2_A 122 GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI--------SDQMYDAVIADIP--DP 190 (275)
T ss_dssp SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC--------CSCCEEEEEECCS--CG
T ss_pred CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccC--------cCCCccEEEEcCc--CH
Confidence 4455566665 67899999999999999999999988 75 48999999998732 2468999999764 44
Q ss_pred HHHHHHHHhcccCCeEEEEec
Q 031568 80 CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+++.+.+.|+|||++++..
T Consensus 191 ~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 191 WNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp GGSHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 678899999999999998854
No 113
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.03 E-value=1.3e-09 Score=84.09 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=68.8
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
+.++.+|+++|+++.+++.|++|++.+++.++++++.+|+.+++ ++||+|++|++.. ...+++.+.++|
T Consensus 213 a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD~Vi~dpP~~-~~~~l~~~~~~L 281 (336)
T 2yx1_A 213 CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKGNRVIMNLPKF-AHKFIDKALDIV 281 (336)
T ss_dssp TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEEEEEECCTTT-GGGGHHHHHHHE
T ss_pred ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCCcEEEECCcHh-HHHHHHHHHHHc
Confidence 33688999999999999999999999999778999999998753 4799999997533 347888999999
Q ss_pred cCCeEEEEeccc
Q 031568 91 KVGGIAVYDNTL 102 (157)
Q Consensus 91 ~~gG~iv~~~~~ 102 (157)
+|||++++..+.
T Consensus 282 ~~gG~l~~~~~~ 293 (336)
T 2yx1_A 282 EEGGVIHYYTIG 293 (336)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCCCEEEEEEee
Confidence 999999886543
No 114
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.01 E-value=7e-10 Score=81.26 Aligned_cols=88 Identities=19% Similarity=0.206 Sum_probs=71.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++.. +.+++++|+++++++.|+++++..++.++++++.+|+.+... ..++||+|+++.. ....
T Consensus 103 G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~D~v~~~~~--~~~~ 171 (248)
T 2yvl_A 103 GALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-------PEGIFHAAFVDVR--EPWH 171 (248)
T ss_dssp SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-------CTTCBSEEEECSS--CGGG
T ss_pred cHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-------CCCcccEEEECCc--CHHH
Confidence 4455556656 789999999999999999999999987789999999987430 1457999999865 3456
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+|||.+++..
T Consensus 172 ~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 172 YLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp GHHHHHHHBCTTCEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEEe
Confidence 7889999999999999854
No 115
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.01 E-value=6.3e-10 Score=85.57 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=67.8
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcC----------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAG----------VDHKINFIESEALSVLDQLLKYSENEGSFDYA 70 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~----------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I 70 (157)
|..|..++.. .|.++|+++|+++.+++.|++|++..+ ..++++++.+|+.+..+.+. .++||+|
T Consensus 117 G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V 191 (336)
T 2b25_A 117 GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SLTFDAV 191 (336)
T ss_dssp SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC------------EEEE
T ss_pred CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC-----CCCeeEE
Confidence 5556667765 477999999999999999999998643 23589999999987543331 4579999
Q ss_pred EEcCCCcccHHHHHHHHhcccCCeEEEE
Q 031568 71 FVDADKDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 71 ~iD~~~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
++|... ....++.+.+.|+|||.+++
T Consensus 192 ~~~~~~--~~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 192 ALDMLN--PHVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp EECSSS--TTTTHHHHGGGEEEEEEEEE
T ss_pred EECCCC--HHHHHHHHHHhcCCCcEEEE
Confidence 998653 23468899999999999986
No 116
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.01 E-value=1.8e-09 Score=82.22 Aligned_cols=91 Identities=5% Similarity=0.095 Sum_probs=73.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+. +++||+|++... .
T Consensus 102 G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----------~~~fD~v~~~~~l~~~~~ 170 (318)
T 2fk8_A 102 GTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AEPVDRIVSIEAFEHFGH 170 (318)
T ss_dssp SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCG
T ss_pred hHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC----------CCCcCEEEEeChHHhcCH
Confidence 44455555554 6799999999999999999999999887899999998653 367999998742 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+....+++.+.++|+|||.+++.....
T Consensus 171 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 171 ENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 456788999999999999999866543
No 117
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.00 E-value=8.5e-10 Score=79.99 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=70.6
Q ss_pred cccHHHHHhhC-----CCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEE
Q 031568 2 HLPTKLFMTGN-----KILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFV 72 (157)
Q Consensus 2 g~st~~l~~~~-----~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~i 72 (157)
|..|..++... |.++|+++|+++++++.|+++++..++ .++++++.+|+.+..+.... ..++||+|++
T Consensus 92 G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~I~~ 168 (227)
T 2pbf_A 92 GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK---ELGLFDAIHV 168 (227)
T ss_dssp SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH---HHCCEEEEEE
T ss_pred CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc---cCCCcCEEEE
Confidence 66677777654 568999999999999999999998873 35899999999874311000 0357999999
Q ss_pred cCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568 73 DADKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 73 D~~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+..... +++.+.+.|+|||++++.
T Consensus 169 ~~~~~~---~~~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 169 GASASE---LPEILVDLLAENGKLIIP 192 (227)
T ss_dssp CSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred CCchHH---HHHHHHHhcCCCcEEEEE
Confidence 876544 357778999999999885
No 118
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.99 E-value=1e-10 Score=85.58 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=69.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC- 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~- 80 (157)
|..+..++.. +.+|+++|+++.+++.|+++++..++.++++++++|+.+..+ .++||+|++++......
T Consensus 90 G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~D~v~~~~~~~~~~~ 159 (241)
T 3gdh_A 90 GGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--------FLKADVVFLSPPWGGPDY 159 (241)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--------GCCCSEEEECCCCSSGGG
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--------cCCCCEEEECCCcCCcch
Confidence 4445555554 589999999999999999999999987789999999988642 46899999997543221
Q ss_pred --HHHHHHHhcccCCeEEEEec
Q 031568 81 --NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 --~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+..+.++|+|||+++++.
T Consensus 160 ~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 160 ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp GGSSSBCTTTSCSSCHHHHHHH
T ss_pred hhhHHHHHHhhcCCcceeHHHH
Confidence 13445668899999987754
No 119
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.99 E-value=1.3e-09 Score=79.10 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=69.4
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++.. .++++|+++|+++.+++.++++++.. ++++++.+|+.+...... ..++||+|++|.......
T Consensus 85 G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~----~~~~~D~v~~~~~~~~~~ 157 (227)
T 1g8a_A 85 GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRA----LVPKVDVIFEDVAQPTQA 157 (227)
T ss_dssp TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTT----TCCCEEEEEECCCSTTHH
T ss_pred CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhc----ccCCceEEEECCCCHhHH
Confidence 5556667765 36789999999999999999988765 589999999976321000 135799999998644433
Q ss_pred -HHHHHHHhcccCCeEEEEe
Q 031568 81 -NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 -~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.+.|+|||.+++.
T Consensus 158 ~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 158 KILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 3488999999999999885
No 120
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.99 E-value=1.8e-09 Score=83.67 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=68.9
Q ss_pred HHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------
Q 031568 8 FMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------- 77 (157)
Q Consensus 8 l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------- 77 (157)
++... |+.+++++|+++.+++.|++|++.+|+. +++++++|+.+... +.++||+|++|++..
T Consensus 221 ~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~-------~~~~~D~Ii~npPyg~r~~~~~~~ 292 (354)
T 3tma_A 221 AASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR-------FFPEVDRILANPPHGLRLGRKEGL 292 (354)
T ss_dssp HHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG-------TCCCCSEEEECCCSCC----CHHH
T ss_pred HHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc-------ccCCCCEEEECCCCcCccCCcccH
Confidence 33333 7899999999999999999999999997 89999999988632 145699999997532
Q ss_pred --ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.|..+++.+.++|+|||.+++-
T Consensus 293 ~~~~~~~~~~~~~~LkpgG~l~i~ 316 (354)
T 3tma_A 293 FHLYWDFLRGALALLPPGGRVALL 316 (354)
T ss_dssp HHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1466788888999999999884
No 121
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.99 E-value=1.5e-09 Score=80.68 Aligned_cols=94 Identities=16% Similarity=0.295 Sum_probs=75.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|+++.+++.|++++...++.++++++.+|+.+. + + +.++||+|++... .+.
T Consensus 73 G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 144 (273)
T 3bus_A 73 GKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL-P-F-----EDASFDAVWALESLHHMPD 144 (273)
T ss_dssp SHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-S-----CTTCEEEEEEESCTTTSSC
T ss_pred CHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC-C-C-----CCCCccEEEEechhhhCCC
Confidence 44555566554 7899999999999999999999999888999999999763 2 1 2468999997642 234
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.+.|+|||.+++.+...
T Consensus 145 ~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 145 RGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeec
Confidence 5788999999999999999876543
No 122
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.98 E-value=3.3e-09 Score=79.45 Aligned_cols=90 Identities=6% Similarity=0.058 Sum_probs=72.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+. .++||+|++... .
T Consensus 76 G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----------~~~fD~v~~~~~l~~~~~ 144 (287)
T 1kpg_A 76 GATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------DEPVDRIVSIGAFEHFGH 144 (287)
T ss_dssp SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------CCCCSEEEEESCGGGTCT
T ss_pred cHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----------CCCeeEEEEeCchhhcCh
Confidence 44455566444 4599999999999999999999998888999999999642 368999998642 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.++|+|||.+++....
T Consensus 145 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 145 ERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp TTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 45678899999999999999986654
No 123
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.97 E-value=1.2e-09 Score=81.99 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=73.8
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Cc
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KD 77 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~ 77 (157)
|..+..++...| +.+|+++|+++.+++.|++++...+. +++++.+|+.+. + ..++||+|++... .+
T Consensus 34 G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~-------~~~~fD~v~~~~~l~~~~ 103 (284)
T 3gu3_A 34 GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-------LNDKYDIAICHAFLLHMT 103 (284)
T ss_dssp THHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-------CSSCEEEEEEESCGGGCS
T ss_pred CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C-------cCCCeeEEEECChhhcCC
Confidence 556666777777 58999999999999999999987765 899999999864 2 1468999998763 23
Q ss_pred ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
....+++.+.+.|+|||.+++.+..
T Consensus 104 ~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 104 TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4578899999999999999986554
No 124
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.97 E-value=1.6e-09 Score=77.92 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=75.2
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---c
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D 77 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~ 77 (157)
|..+..++... |..+|+++|+++.+++.|++++...++. +++++.+|+.+.- + ..++||+|++.... .
T Consensus 49 G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~~fD~v~~~~~l~~~~ 120 (219)
T 3dh0_A 49 GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----PDNTVDFIFMAFTFHELS 120 (219)
T ss_dssp CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----CSSCEEEEEEESCGGGCS
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----CCCCeeEEEeehhhhhcC
Confidence 55666677654 7889999999999999999999998886 8999999997641 1 25689999987532 3
Q ss_pred ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
....+++.+.++|+|||.+++.+..
T Consensus 121 ~~~~~l~~~~~~LkpgG~l~i~~~~ 145 (219)
T 3dh0_A 121 EPLKFLEELKRVAKPFAYLAIIDWK 145 (219)
T ss_dssp SHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHhCCCeEEEEEEec
Confidence 4577899999999999999986543
No 125
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.97 E-value=1.3e-09 Score=79.47 Aligned_cols=91 Identities=13% Similarity=-0.020 Sum_probs=69.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-ccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-NYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-~~~ 80 (157)
|..+..++...+.++|+++|+++.+++.|+++++.. ++++++.+|+.+....+. ..++||+|+.+...+ ...
T Consensus 86 G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~----~~~~~D~v~~~~~~~~~~~ 158 (230)
T 1fbn_A 86 GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN----IVEKVDVIYEDVAQPNQAE 158 (230)
T ss_dssp SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT----TSCCEEEEEECCCSTTHHH
T ss_pred CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc----cCccEEEEEEecCChhHHH
Confidence 556666777767789999999999999999987654 589999999876211010 136799999875432 236
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.+.|+|||.+++.
T Consensus 159 ~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 159 ILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCcEEEEE
Confidence 6789999999999999985
No 126
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.97 E-value=7.5e-10 Score=80.49 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=71.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..++...|+.+++++|+++.+++.|++++...+ +++++.+|+.+... .++||+|++......
T Consensus 56 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~fD~v~~~~~l~~~~~ 124 (234)
T 3dtn_A 56 GLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEKYDMVVSALSIHHLED 124 (234)
T ss_dssp SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCCceEEEEeCccccCCH
Confidence 5566777778889999999999999999999886554 79999999976421 368999998763221
Q ss_pred --cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 --YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 --~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++.+..
T Consensus 125 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 125 EDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 224789999999999999986543
No 127
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.3e-09 Score=80.90 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=71.8
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhh-cCCCCCceeEEEEcCCCc-
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLK-YSENEGSFDYAFVDADKD- 77 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~-~~~~~~~fD~I~iD~~~~- 77 (157)
|..+..++... ++.+|+++|+++.+++.|+++++.. +...+++++++|+.+.- +.. .....++||+|++.....
T Consensus 48 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~fD~V~~~~~l~~ 125 (299)
T 3g5t_A 48 GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVDKQKIDMITAVECAHW 125 (299)
T ss_dssp THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTTSSCEEEEEEESCGGG
T ss_pred CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccccccccCCCeeEEeHhhHHHH
Confidence 55556666654 8999999999999999999999987 55578999999997642 110 000016899999865311
Q ss_pred -ccHHHHHHHHhcccCCeEEEE
Q 031568 78 -NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~ 98 (157)
....+++.+.+.|+|||.+++
T Consensus 126 ~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 126 FDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEE
T ss_pred hCHHHHHHHHHHhcCCCcEEEE
Confidence 567889999999999999987
No 128
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=98.95 E-value=6.4e-09 Score=77.91 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=68.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++.. +.+|+++|+++.+++.|++++...++ +++++.+|+.+.. ..++||+|++... .
T Consensus 132 G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~~fD~i~~~~~~~~~~~ 199 (286)
T 3m70_A 132 GRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAAN--------IQENYDFIVSTVVFMFLNR 199 (286)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCC--------CCSCEEEEEECSSGGGSCG
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccc--------ccCCccEEEEccchhhCCH
Confidence 4445555554 67999999999999999999999887 7999999998642 1468999998753 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+....+++.+.++|+|||.+++-
T Consensus 200 ~~~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 200 ERVPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Confidence 34567899999999999997663
No 129
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.95 E-value=9.6e-09 Score=75.45 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=64.7
Q ss_pred CcccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 1 MHLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 1 ~g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
.|..|..++.. .+.++|+++|+++.+++...+..++. .++.++.+|+....... ...++||+||+|...+..
T Consensus 87 tG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~----~~~~~~D~I~~d~a~~~~ 159 (232)
T 3id6_C 87 SGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK----SVVENVDVLYVDIAQPDQ 159 (232)
T ss_dssp TSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT----TTCCCEEEEEECCCCTTH
T ss_pred CCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh----ccccceEEEEecCCChhH
Confidence 36667777763 47899999999999976555544432 47999999987532100 013589999999876554
Q ss_pred HHHHH-HHHhcccCCeEEEEe
Q 031568 80 CNYHE-RLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~-~~~~~L~~gG~iv~~ 99 (157)
...+. .+.+.|+|||.+++.
T Consensus 160 ~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 160 TDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEE
Confidence 55554 444599999999985
No 130
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.95 E-value=1.6e-09 Score=77.84 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=69.2
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++... |..+|+++|+++.+++.|++++...+.. +++++.+|+.+.++. .++||+|+++.......
T Consensus 89 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~v~~~~~~~~~~ 160 (215)
T 2yxe_A 89 GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYEP-------LAPYDRIYTTAAGPKIP 160 (215)
T ss_dssp SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCGG-------GCCEEEEEESSBBSSCC
T ss_pred cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCC-------CCCeeEEEECCchHHHH
Confidence 55666677654 5689999999999999999999998875 699999998654321 35799999987654433
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
+.+.++|+|||.+++.
T Consensus 161 ---~~~~~~L~pgG~lv~~ 176 (215)
T 2yxe_A 161 ---EPLIRQLKDGGKLLMP 176 (215)
T ss_dssp ---HHHHHTEEEEEEEEEE
T ss_pred ---HHHHHHcCCCcEEEEE
Confidence 5778999999999885
No 131
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.94 E-value=3.5e-09 Score=82.64 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=67.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC---------CCCCceeEEEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS---------ENEGSFDYAFV 72 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~---------~~~~~fD~I~i 72 (157)
|.-++.++. ...+|+++|+++++++.|++|++.+|+. +++++.+|+.+.++.+.... ....+||+|++
T Consensus 225 G~~~l~la~--~~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~ 301 (369)
T 3bt7_A 225 GNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 301 (369)
T ss_dssp SHHHHHHGG--GSSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE
T ss_pred CHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE
Confidence 333444443 4679999999999999999999999985 89999999999887652100 00027999999
Q ss_pred cCCCcccHHHHHHHHhcccCCeEEEEecc
Q 031568 73 DADKDNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 73 D~~~~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
|++.... .+.+.+.|+++|.|++-.+
T Consensus 302 dPPr~g~---~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 302 DPPRSGL---DSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred CcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence 9875432 2345566678888887544
No 132
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.94 E-value=5.3e-09 Score=76.12 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~~~ 87 (157)
++.+|+++|+++.+++.|++++...+...+++++.+|+.+.. ..++||+|++... ......+++.+.
T Consensus 87 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~ 158 (235)
T 3lcc_A 87 PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFDLIFDYVFFCAIEPEMRPAWAKSMY 158 (235)
T ss_dssp TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEEEEEEESSTTTSCGGGHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--------CCCCeeEEEEChhhhcCCHHHHHHHHHHHH
Confidence 688999999999999999999987666678999999998742 1468999997542 225577899999
Q ss_pred hcccCCeEEEEecc
Q 031568 88 KLLKVGGIAVYDNT 101 (157)
Q Consensus 88 ~~L~~gG~iv~~~~ 101 (157)
++|+|||.+++...
T Consensus 159 ~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 159 ELLKPDGELITLMY 172 (235)
T ss_dssp HHEEEEEEEEEEEC
T ss_pred HHCCCCcEEEEEEe
Confidence 99999999998543
No 133
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.93 E-value=1.7e-09 Score=82.28 Aligned_cols=92 Identities=11% Similarity=0.138 Sum_probs=73.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~~ 79 (157)
|..+..++... +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + + +.++||+|++.... -..
T Consensus 129 G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~V~~~~~l~~~~~ 200 (312)
T 3vc1_A 129 GGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-F-----DKGAVTASWNNESTMYVDL 200 (312)
T ss_dssp SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-C-----CCCCEeEEEECCchhhCCH
Confidence 44455566553 6899999999999999999999999988999999999763 2 1 25789999985421 136
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+++.+.++|+|||.+++-..
T Consensus 201 ~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 201 HDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEc
Confidence 7889999999999999998554
No 134
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.93 E-value=3.1e-09 Score=79.35 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=72.1
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHc-C-CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~-~-~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..+..++.. .|+++|+++|+++++++.|+++++.. | +.++++++.+|+.+.. + +.++||+|+++.. .
T Consensus 111 G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~--~-----~~~~~D~v~~~~~--~ 181 (280)
T 1i9g_A 111 GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--L-----PDGSVDRAVLDML--A 181 (280)
T ss_dssp SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--C-----CTTCEEEEEEESS--C
T ss_pred cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC--C-----CCCceeEEEECCc--C
Confidence 4455566663 47899999999999999999999987 5 4568999999998751 1 1467999999865 3
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+|||.+++..
T Consensus 182 ~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 182 PWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp GGGGHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEe
Confidence 4577899999999999999853
No 135
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.92 E-value=4.5e-09 Score=75.89 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=66.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
.|..|..++...++++|+++|+++.+++.+.+..+.. .++.++.+|+.+...... ..++||+|+++...+...
T Consensus 68 tG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~----~~~~fD~V~~~~~~~~~~ 140 (210)
T 1nt2_A 68 SGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSG----IVEKVDLIYQDIAQKNQI 140 (210)
T ss_dssp TSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTT----TCCCEEEEEECCCSTTHH
T ss_pred CCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcc----cccceeEEEEeccChhHH
Confidence 3666677777666789999999999987777766543 368899999875311000 136899999986443323
Q ss_pred -HHHHHHHhcccCCeEEEEe
Q 031568 81 -NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 -~~~~~~~~~L~~gG~iv~~ 99 (157)
.+++.+.+.|+|||.+++.
T Consensus 141 ~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 141 EILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEE
Confidence 3478899999999999986
No 136
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.92 E-value=2.1e-09 Score=80.90 Aligned_cols=93 Identities=11% Similarity=0.207 Sum_probs=74.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + + ++++||+|++... .+.
T Consensus 94 G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 165 (297)
T 2o57_A 94 GGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNSYDFIWSQDAFLHSPD 165 (297)
T ss_dssp SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCCCEeEEEecchhhhcCC
Confidence 44555566553 5699999999999999999999999888999999999763 2 1 2568999998643 234
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++....
T Consensus 166 ~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 166 KLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEEec
Confidence 578899999999999999987554
No 137
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.92 E-value=3.4e-09 Score=76.73 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=69.8
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|..|..++.. .+.++|+++|+++.+++.++++++..+. .++++++.+|+.+.... .++||+|+++...
T Consensus 89 G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~i~~~~~~ 161 (226)
T 1i1n_A 89 GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-------EAPYDAIHVGAAA 161 (226)
T ss_dssp SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-------GCCEEEEEECSBB
T ss_pred CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-------CCCcCEEEECCch
Confidence 5566667765 3668999999999999999999998764 35899999998753221 4579999998764
Q ss_pred cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.. +++.+.+.|+|||++++..
T Consensus 162 ~~---~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 162 PV---VPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp SS---CCHHHHHTEEEEEEEEEEE
T ss_pred HH---HHHHHHHhcCCCcEEEEEE
Confidence 43 3467889999999999853
No 138
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=98.92 E-value=4e-10 Score=83.11 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=68.0
Q ss_pred cccHHHHHhh--CCCcEEEEEeCChhHHHHHHHHHHHc---CCCCc-------------------------EE-------
Q 031568 2 HLPTKLFMTG--NKILQITAIDVNRETYEIGLPIIKKA---GVDHK-------------------------IN------- 44 (157)
Q Consensus 2 g~st~~l~~~--~~~~~v~~ve~~~~~~~~a~~~~~~~---~~~~~-------------------------i~------- 44 (157)
|.-+..++.. .++.+|+++|+++.+++.|++|+... ++.++ ++
T Consensus 63 G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (250)
T 1o9g_A 63 GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEG 142 (250)
T ss_dssp SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccc
Confidence 4334445555 56789999999999999999999876 55333 67
Q ss_pred ------EEEccHHHHHHH--HhhcCCCCCceeEEEEcCCC------------cccHHHHHHHHhcccCCeEEEE
Q 031568 45 ------FIESEALSVLDQ--LLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 45 ------~~~~d~~~~l~~--~~~~~~~~~~fD~I~iD~~~------------~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
++++|+.+..+. .. ..++||+|++++.. ..+..+++.+.++|+|||++++
T Consensus 143 ~~~~~~~~~~D~~~~~~~~~~~----~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 143 GALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp SSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cccccceeeccccccccccccc----CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 999998775421 00 13479999998631 1234778889999999999997
No 139
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.91 E-value=4.4e-10 Score=82.97 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=54.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|.-+..++...++.+|+++|+++.+++.|++|++.+++.++++++++|+.+ ++..+.. ...++||+|+++++
T Consensus 77 G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~fD~i~~npp 149 (254)
T 2h00_A 77 SCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIYDFCMCNPP 149 (254)
T ss_dssp TTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCBSEEEECCC
T ss_pred hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhc--ccCCcccEEEECCC
Confidence 444555666667899999999999999999999999998789999999865 2222210 00157999999864
No 140
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=98.91 E-value=3e-09 Score=83.24 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=70.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|..+..++.. +..+|+++|++ .+++.|+++++.+++.++++++.+|+.++. + .++||+|+++.-
T Consensus 75 G~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~~D~Iv~~~~~~~l~~ 144 (376)
T 3r0q_C 75 GILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PEKVDVIISEWMGYFLLR 144 (376)
T ss_dssp THHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SSCEEEEEECCCBTTBTT
T ss_pred CHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CCcceEEEEcChhhcccc
Confidence 4444444444 45599999999 999999999999999888999999998752 1 368999999651
Q ss_pred CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
......++..+.++|+|||++++....
T Consensus 145 e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 145 ESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 123556788888999999999886543
No 141
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=98.91 E-value=2.5e-09 Score=81.72 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=69.7
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++...+ +++|+++|+++++++.|+++++..|+. +++++.+|+.+..+. .++||+|+++.......
T Consensus 87 G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~-------~~~fD~Iv~~~~~~~~~ 158 (317)
T 1dl5_A 87 GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPE-------FSPYDVIFVTVGVDEVP 158 (317)
T ss_dssp SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSCCC
T ss_pred hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhcccc-------CCCeEEEEEcCCHHHHH
Confidence 555556666555 589999999999999999999999986 599999999875431 46799999997654433
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
+.+.+.|+|||++++.
T Consensus 159 ---~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 159 ---ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp ---HHHHHHEEEEEEEEEE
T ss_pred ---HHHHHhcCCCcEEEEE
Confidence 5677899999999985
No 142
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.90 E-value=3.3e-09 Score=78.39 Aligned_cols=89 Identities=13% Similarity=0.267 Sum_probs=70.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..|..++... .+|+++|+++.+++.|+++++..++. +++++.+|+.+. + + ++++||+|++... .+.
T Consensus 49 G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~-----~~~~fD~V~~~~~l~~~~d 118 (260)
T 1vl5_A 49 GHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----TDERFHIVTCRIAAHHFPN 118 (260)
T ss_dssp CHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C-----CCCCEEEEEEhhhhHhcCC
Confidence 55555566553 49999999999999999999988875 799999999763 2 2 2578999998753 234
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+|||.+++.+
T Consensus 119 ~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 119 PASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEE
Confidence 5788999999999999998853
No 143
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=98.90 E-value=4e-09 Score=82.76 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=70.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++.. +.+|+++|+++.+++.|++|++.+++. ++++.+|+.+... +.++||+|++++...
T Consensus 245 G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~-------~~~~fD~Ii~npp~~~~~~ 313 (381)
T 3dmg_A 245 GALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALT-------EEARFDIIVTNPPFHVGGA 313 (381)
T ss_dssp STTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSC-------TTCCEEEEEECCCCCTTCS
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccc-------cCCCeEEEEECCchhhccc
Confidence 5555566654 679999999999999999999998874 8999999987642 136899999986432
Q ss_pred ----ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ----NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ----~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+++.
T Consensus 314 ~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 314 VILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp SCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 2457888899999999999884
No 144
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=98.90 E-value=5.3e-08 Score=69.37 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---cHHHHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---YCNYHE 84 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---~~~~~~ 84 (157)
++...|+++++++|+|+.+++++++|++.+|...++++ +|..+..+ .++||+|+.-.-.+- -...+.
T Consensus 67 l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~~~DvVLa~k~LHlL~~~~~al~ 136 (200)
T 3fzg_A 67 QWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KGTYDVVFLLKMLPVLKQQDVNIL 136 (200)
T ss_dssp HHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TSEEEEEEEETCHHHHHHTTCCHH
T ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CCCcChhhHhhHHHhhhhhHHHHH
Confidence 44456899999999999999999999999998767777 56654422 678999997542111 112234
Q ss_pred HHHhcccCCeEEEEec
Q 031568 85 RLMKLLKVGGIAVYDN 100 (157)
Q Consensus 85 ~~~~~L~~gG~iv~~~ 100 (157)
.+.+.|+|||++|.-.
T Consensus 137 ~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 137 DFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTCEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEeC
Confidence 6789999999999754
No 145
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.90 E-value=2.6e-09 Score=78.07 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=67.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...+ .+|+++|+++.+++.|+++++..++. +++++.+|+...++. ..+||+|+++.......
T Consensus 103 G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~~- 172 (235)
T 1jg1_A 103 GWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPP-------KAPYDVIIVTAGAPKIP- 172 (235)
T ss_dssp SHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGG-------GCCEEEEEECSBBSSCC-
T ss_pred CHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCC-------CCCccEEEECCcHHHHH-
Confidence 566666777655 89999999999999999999999886 599999998432221 24599999987654433
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
+.+.+.|+|||++++.
T Consensus 173 --~~~~~~L~pgG~lvi~ 188 (235)
T 1jg1_A 173 --EPLIEQLKIGGKLIIP 188 (235)
T ss_dssp --HHHHHTEEEEEEEEEE
T ss_pred --HHHHHhcCCCcEEEEE
Confidence 4678899999999885
No 146
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.89 E-value=4.8e-09 Score=81.28 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=70.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|..+..++.. +..+|+++|+++ +++.|+++++..++.++++++.+|+.+. + + +.++||+|+++..
T Consensus 78 G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~Iis~~~~~~l~~ 148 (349)
T 3q7e_A 78 GILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV-E-L-----PVEKVDIIISEWMGYCLFY 148 (349)
T ss_dssp SHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C-----SSSCEEEEEECCCBBTBTB
T ss_pred hHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc-c-C-----CCCceEEEEEccccccccC
Confidence 4444445544 677999999995 9999999999999988899999999875 1 2 2478999998641
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
......+++.+.++|+|||+++.+.
T Consensus 149 ~~~~~~~l~~~~r~LkpgG~li~~~ 173 (349)
T 3q7e_A 149 ESMLNTVLHARDKWLAPDGLIFPDR 173 (349)
T ss_dssp TCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred chhHHHHHHHHHHhCCCCCEEcccc
Confidence 2345677888889999999998643
No 147
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.88 E-value=8.1e-09 Score=72.85 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=68.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++.. +.+++++|+++.+++.++++++..++. +++++.+|+.+.. ..++||+|++... .
T Consensus 44 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~~~~D~v~~~~~l~~~~~ 112 (199)
T 2xvm_A 44 GRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT--------FDRQYDFILSTVVLMFLEA 112 (199)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC--------CCCCEEEEEEESCGGGSCG
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC--------CCCCceEEEEcchhhhCCH
Confidence 4444445544 679999999999999999999988874 6999999997641 1468999998753 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....+++.+.+.|+|||.+++-
T Consensus 113 ~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 113 KTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEE
Confidence 24577899999999999997653
No 148
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=98.88 E-value=4.7e-09 Score=81.60 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=74.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~---- 76 (157)
|..+..++..+|+.+++++|+ |.+++.|+++++..++.++++++.+|+.+.- + + .++||+|++....
T Consensus 191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------p~~~D~v~~~~vlh~~~ 262 (363)
T 3dp7_A 191 GKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F------PTGFDAVWMSQFLDCFS 262 (363)
T ss_dssp CHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C------CCCCSEEEEESCSTTSC
T ss_pred CHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-C------CCCcCEEEEechhhhCC
Confidence 556667778889999999999 9999999999998888789999999997630 0 1 3579999985432
Q ss_pred -cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+....+++.+.+.|+|||.+++.+..+
T Consensus 263 ~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 263 EEEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 123467889999999999998765544
No 149
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.87 E-value=3e-09 Score=83.32 Aligned_cols=96 Identities=11% Similarity=0.175 Sum_probs=74.1
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc-----C-CC-CcEEEEEccHHHHHH----HHhhcCCCCCceeE
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLD----QLLKYSENEGSFDY 69 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~-----~-~~-~~i~~~~~d~~~~l~----~~~~~~~~~~~fD~ 69 (157)
|..+..++... ++++|+++|+++.+++.|+++++.. | .. ++++++.+|+.+... .+ +.++||+
T Consensus 95 G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~-----~~~~fD~ 169 (383)
T 4fsd_A 95 GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV-----PDSSVDI 169 (383)
T ss_dssp SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC-----CTTCEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC-----CCCCEEE
Confidence 55566666654 7889999999999999999998765 4 32 589999999986421 11 2568999
Q ss_pred EEEcCC---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 70 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 70 I~iD~~---~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
|++... .+....+++.+.++|+|||++++.+..
T Consensus 170 V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 170 VISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 998763 234678899999999999999986544
No 150
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.87 E-value=7.1e-09 Score=75.53 Aligned_cols=89 Identities=15% Similarity=0.029 Sum_probs=68.4
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH--HHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l--~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..+..++... |+++|+++|+++.+++.+.++++.. .+++++.+|+.+.. +.. .++||+|++|.....
T Consensus 89 G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~~~~D~V~~~~~~~~ 159 (233)
T 2ipx_A 89 GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------IAMVDVIFADVAQPD 159 (233)
T ss_dssp SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------CCCEEEEEECCCCTT
T ss_pred CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------CCcEEEEEEcCCCcc
Confidence 55566677654 6789999999999988888888775 47999999998642 211 468999999876332
Q ss_pred c-HHHHHHHHhcccCCeEEEEe
Q 031568 79 Y-CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~-~~~~~~~~~~L~~gG~iv~~ 99 (157)
. ..++..+.+.|+|||++++.
T Consensus 160 ~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 160 QTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEE
Confidence 2 34577789999999999984
No 151
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=98.86 E-value=5.8e-09 Score=79.94 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=74.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++..+|+.+++++|+ |.+++.|++++...++.++++++.+|+.+.+ ..+||+|++-...
T Consensus 181 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D~v~~~~vlh~~~~ 250 (332)
T 3i53_A 181 GGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAGGYVLSAVLHDWDD 250 (332)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCSEEEEESCGGGSCH
T ss_pred hHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCcEEEEehhhccCCH
Confidence 556667777889999999999 9999999999999998889999999997421 2379999985422
Q ss_pred cccHHHHHHHHhcccCCeEEEEecccC
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
+....+++.+.+.|+|||.+++.+...
T Consensus 251 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 251 LSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 123678999999999999998866544
No 152
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=98.86 E-value=1.4e-08 Score=86.03 Aligned_cols=138 Identities=9% Similarity=0.146 Sum_probs=91.3
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHc------CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~------~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|..+..|+... +..+|+++|+++.+++.|+++++.. +. .+++++++|+.+.-. ..++||+|++..
T Consensus 733 G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~-------~d~sFDlVV~~e 804 (950)
T 3htx_A 733 GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDS-------RLHDVDIGTCLE 804 (950)
T ss_dssp SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCT-------TSCSCCEEEEES
T ss_pred CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCc-------ccCCeeEEEEeC
Confidence 55555566554 4589999999999999999977643 44 489999999987421 247899999865
Q ss_pred CCcc-----cHHHHHHHHhcccCCeEEEEeccc------CCcc-----ccCCCC------CCC-CCcccchHHHHHHHHH
Q 031568 75 DKDN-----YCNYHERLMKLLKVGGIAVYDNTL------WGGT-----VAVPEE------QVP-DHFRGSSRQAILDLNR 131 (157)
Q Consensus 75 ~~~~-----~~~~~~~~~~~L~~gG~iv~~~~~------~~~~-----~~~~~~------~~~-~~~~~~~~~~~~~~~~ 131 (157)
.... ...+++.+.+.|+|| ++++.... +.+. ...|.. ..+ ..++- ..+.++.|.+
T Consensus 805 VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEW-TReEFr~Wae 882 (950)
T 3htx_A 805 VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEW-TREQFNQWAS 882 (950)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCB-CHHHHHHHHH
T ss_pred chhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceee-cHHHHHHHHH
Confidence 4322 234788899999999 55553221 1111 000000 001 11111 3456788888
Q ss_pred HhhcCCCeeEEeeecCCe
Q 031568 132 SLADDPRVQLSHVALGDG 149 (157)
Q Consensus 132 ~l~~~~~~~~~~~p~~~G 149 (157)
.+..+.+|.+.+.++|+|
T Consensus 883 ~LAer~GYsVefvGVGDg 900 (950)
T 3htx_A 883 KLGKRHNYSVEFSGVGGS 900 (950)
T ss_dssp HHHHHTTEEEEEEEESSC
T ss_pred HHHHhcCcEEEEEccCCC
Confidence 888888999999999988
No 153
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=98.86 E-value=1.1e-08 Score=81.36 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=72.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHH-------HHHHHHcCCC-CcEEEEEccHHHH---HHHHhhcCCCCCceeEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFIESEALSV---LDQLLKYSENEGSFDYA 70 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a-------~~~~~~~~~~-~~i~~~~~d~~~~---l~~~~~~~~~~~~fD~I 70 (157)
|..++.++...+..+|++||+++.+++.| +++++..|+. ++++++++|.... ++.. .++||+|
T Consensus 254 G~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~------~~~FDvI 327 (433)
T 1u2z_A 254 GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL------IPQCDVI 327 (433)
T ss_dssp SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH------GGGCSEE
T ss_pred CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc------cCCCCEE
Confidence 55566666655677999999999999999 9999988854 5899999865421 2221 3579999
Q ss_pred EEcCC--CcccHHHHHHHHhcccCCeEEEEecccC
Q 031568 71 FVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 71 ~iD~~--~~~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
++... .+.....++.+.+.|+|||.+++.+.+.
T Consensus 328 vvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 328 LVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp EECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred EEeCccccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 98632 2345667888999999999999976543
No 154
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=98.85 E-value=1e-08 Score=79.04 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=75.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|+ +.+++.|++++...++.++++++.+|+.+..+.. .++||+|++.....
T Consensus 191 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~v~~~~vlh~~~~ 263 (352)
T 3mcz_A 191 GTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADVVMLNDCLHYFDA 263 (352)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccEEEEecccccCCH
Confidence 555666777889999999999 9999999999999998889999999998642111 45699999854321
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 264 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 264 REAREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 23578899999999999998865544
No 155
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.85 E-value=8.2e-09 Score=79.71 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++...|..+|+++|+++.+++.|+++++..++. ++++.+|+.+.. .++||+|++++...
T Consensus 208 G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~fD~Iv~~~~~~~g~~ 276 (343)
T 2pjd_A 208 GVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRFDMIISNPPFHDGMQ 276 (343)
T ss_dssp SHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCEEEEEECCCCCSSSH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCeeEEEECCCcccCcc
Confidence 555566777778889999999999999999999998874 677899987632 46899999987532
Q ss_pred ----ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 ----NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 ----~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+++-
T Consensus 277 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 277 TSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 2356788899999999999874
No 156
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.84 E-value=2.1e-09 Score=78.12 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=68.1
Q ss_pred cccHHHHHhhCC------CcEEEEEeCChhHHHHHHHHHHHcCC----CCcEEEEEccHHHHHHHHhhcCCCCCceeEEE
Q 031568 2 HLPTKLFMTGNK------ILQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENEGSFDYAF 71 (157)
Q Consensus 2 g~st~~l~~~~~------~~~v~~ve~~~~~~~~a~~~~~~~~~----~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~ 71 (157)
|..|..++...+ .++|+++|+++++++.|+++++..+. .++++++.+|+.+.++. .++||+|+
T Consensus 96 G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~I~ 168 (227)
T 1r18_A 96 GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-------NAPYNAIH 168 (227)
T ss_dssp SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-------GCSEEEEE
T ss_pred cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-------CCCccEEE
Confidence 556666666433 37999999999999999999988762 24799999999873321 36799999
Q ss_pred EcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568 72 VDADKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 72 iD~~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
++...... .+.+.+.|+|||++++.
T Consensus 169 ~~~~~~~~---~~~~~~~LkpgG~lvi~ 193 (227)
T 1r18_A 169 VGAAAPDT---PTELINQLASGGRLIVP 193 (227)
T ss_dssp ECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred ECCchHHH---HHHHHHHhcCCCEEEEE
Confidence 98865443 36778999999999985
No 157
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.84 E-value=2e-08 Score=79.32 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=67.4
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHH-------HcCCC-CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIK-------KAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD- 75 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~-------~~~~~-~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~- 75 (157)
+..++...+..+|++||+++.++++|+++++ .+|+. ++|++++||+.+.--... -..||+||++..
T Consensus 188 ~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~-----~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 188 VLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER-----IANTSVIFVNNFA 262 (438)
T ss_dssp HHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH-----HHTCSEEEECCTT
T ss_pred HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc-----cCCccEEEEcccc
Confidence 3444545566689999999999999998753 45663 689999999987421100 146999998753
Q ss_pred -CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 76 -KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 76 -~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.+.....+.++.+.|+|||.||+-..+
T Consensus 263 F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 263 FGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 234456677888999999999986544
No 158
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=98.84 E-value=1.1e-08 Score=79.76 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=74.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|+ |.+++.|++++...++.++++++.+|+.+.+ ..+||+|++.....
T Consensus 214 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~D~v~~~~vlh~~~d 283 (369)
T 3gwz_A 214 GSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---------PDGADVYLIKHVLHDWDD 283 (369)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSCSEEEEESCGGGSCH
T ss_pred cHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---------CCCceEEEhhhhhccCCH
Confidence 556667777889999999999 9999999999999998889999999997321 23799999854321
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 284 ~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 284 DDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 22368999999999999998866544
No 159
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.84 E-value=8.6e-09 Score=75.39 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=70.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++.. ..+++++|+++.+++.++++++..++. +++++.+|+.+. + + +.++||+|++... ...
T Consensus 33 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 102 (239)
T 1xxl_A 33 GHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-F-----PDDSFDIITCRYAAHHFSD 102 (239)
T ss_dssp SHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-C-----CCCcEEEEEECCchhhccC
Confidence 4445555554 359999999999999999999988875 799999998753 2 1 2468999998753 234
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....++.+.+.|+|||.+++.+.
T Consensus 103 ~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 103 VRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEc
Confidence 57889999999999999988543
No 160
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.84 E-value=5.4e-09 Score=75.36 Aligned_cols=89 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KD-- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~-- 77 (157)
|..+..++...+ +++++|+++.+++.|+++++..+ .+++++.+|+.+. + + +.++||+|++... ..
T Consensus 50 G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~~~~~~~ 118 (227)
T 1ve3_A 50 GGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-S-F-----EDKTFDYVIFIDSIVHFEP 118 (227)
T ss_dssp SHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-C-S-----CTTCEEEEEEESCGGGCCH
T ss_pred CHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-C-C-----CCCcEEEEEEcCchHhCCH
Confidence 444555555544 99999999999999999998876 4799999998763 1 1 2468999998754 22
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||.+++...
T Consensus 119 ~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 119 LELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 345678889999999999987544
No 161
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.83 E-value=8.2e-09 Score=79.73 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|.-+..++.. +..+|+++|+++ +++.|+++++.+++.++++++.+|+.+. + + +.++||+|+++.-
T Consensus 76 G~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~-----~~~~~D~Ivs~~~~~~l~~ 146 (340)
T 2fyt_A 76 GILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-H-L-----PVEKVDVIISEWMGYFLLF 146 (340)
T ss_dssp SHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-C-C-----SCSCEEEEEECCCBTTBTT
T ss_pred cHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-c-C-----CCCcEEEEEEcCchhhccC
Confidence 4434444443 556999999997 9999999999999978999999999864 1 1 2468999998751
Q ss_pred CcccHHHHHHHHhcccCCeEEEEe
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......++..+.++|+|||+++.+
T Consensus 147 ~~~~~~~l~~~~~~LkpgG~lip~ 170 (340)
T 2fyt_A 147 ESMLDSVLYAKNKYLAKGGSVYPD 170 (340)
T ss_dssp TCHHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHHHHHHHhhcCCCcEEEcc
Confidence 123456788888999999999843
No 162
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=98.83 E-value=8.8e-09 Score=75.68 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=69.7
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-c
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-Y 79 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-~ 79 (157)
|..|..++.. .|.++|+++|+++++++.+++++++. .++..+.+|+.+..... ...+.+|+||.|...+. .
T Consensus 89 G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~----~~~~~vDvVf~d~~~~~~~ 161 (233)
T 4df3_A 89 GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR----HLVEGVDGLYADVAQPEQA 161 (233)
T ss_dssp SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT----TTCCCEEEEEECCCCTTHH
T ss_pred CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc----cccceEEEEEEeccCChhH
Confidence 6677777773 58999999999999999999887654 37889999886532111 12568999999875443 3
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
...+..+.+.|||||.+++.
T Consensus 162 ~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 162 AIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhccCCCEEEEE
Confidence 46788889999999999874
No 163
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.82 E-value=1.6e-08 Score=74.14 Aligned_cols=87 Identities=18% Similarity=0.329 Sum_probs=67.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++.. +.+|+++|+++.+++.|++++...+. +++++.+|+.+.. ..++||+|++....
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~fD~v~~~~~~~~~~~ 120 (252)
T 1wzn_A 53 GIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--------FKNEFDAVTMFFSTIMYFD 120 (252)
T ss_dssp CHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCEEEEEECSSGGGGSC
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc--------cCCCccEEEEcCCchhcCC
Confidence 4344445543 67999999999999999999988775 6999999998741 14679999975321
Q ss_pred -cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+++.+.+.|+|||+++++.
T Consensus 121 ~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 121 EEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEec
Confidence 234567888899999999999863
No 164
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=98.81 E-value=1.1e-08 Score=76.67 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=71.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++.. +..+++++|+++.+++.|++++...+...+++++.+|+.+. + +. ..++||+|++....
T Consensus 76 G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~~fD~v~~~~~l~~~~~ 148 (298)
T 1ri5_A 76 GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-H-MD----LGKEFDVISSQFSFHYAFS 148 (298)
T ss_dssp TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-C-CC----CSSCEEEEEEESCGGGGGS
T ss_pred CHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-c-cC----CCCCcCEEEECchhhhhcC
Confidence 4444455544 56699999999999999999999888877899999999764 1 10 15689999987542
Q ss_pred --cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+++.+.++|+|||.+++..
T Consensus 149 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 149 TSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 234568888999999999999754
No 165
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=98.80 E-value=5.2e-09 Score=76.52 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=66.0
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----cc
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----NY 79 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----~~ 79 (157)
+..++... ..+|+++|+++.+++.|++++...+ ..+++++.+|+.+... ..++||+|+++.... .+
T Consensus 94 ~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~-------~~~~fD~v~~~~~l~~~~~~~~ 164 (241)
T 2ex4_A 94 TKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP-------EPDSYDVIWIQWVIGHLTDQHL 164 (241)
T ss_dssp HHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC-------CSSCEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC-------CCCCEEEEEEcchhhhCCHHHH
Confidence 33344443 6799999999999999999988765 3479999999876421 245899999885422 24
Q ss_pred HHHHHHHHhcccCCeEEEEec
Q 031568 80 CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..+++.+.++|+|||++++.+
T Consensus 165 ~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 165 AEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEEE
Confidence 478899999999999998844
No 166
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.80 E-value=5.9e-09 Score=76.67 Aligned_cols=85 Identities=19% Similarity=0.157 Sum_probs=68.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++...|+.+++++|+++.+++.++++ .++++++.+|+.+.. . .++||+|++.... +.
T Consensus 45 G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~fD~v~~~~~l~~~~~ 110 (259)
T 2p35_A 45 GNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQKADLLYANAVFQWVPD 110 (259)
T ss_dssp THHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSCEEEEEEESCGGGSTT
T ss_pred CHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCCcCEEEEeCchhhCCC
Confidence 55566677776889999999999999999987 247899999997642 1 5689999987632 34
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+|||.+++..
T Consensus 111 ~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 111 HLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEe
Confidence 5778999999999999999854
No 167
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.80 E-value=1.4e-08 Score=78.56 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=65.1
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHER 85 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~ 85 (157)
..+..+|+++|+++ +++.|+++++.+++.++++++.+|+.+.- + .++||+|++... .......+..
T Consensus 70 ~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~~~D~Ivs~~~~~~~~~~~~~~~l~~ 140 (348)
T 2y1w_A 70 QAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PEQVDIIISEPMGYMLFNERMLESYLH 140 (348)
T ss_dssp HTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SSCEEEEEECCCBTTBTTTSHHHHHHH
T ss_pred hCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C------CCceeEEEEeCchhcCChHHHHHHHHH
Confidence 34667999999996 88999999999999889999999997641 1 468999999753 2345677888
Q ss_pred HHhcccCCeEEEEe
Q 031568 86 LMKLLKVGGIAVYD 99 (157)
Q Consensus 86 ~~~~L~~gG~iv~~ 99 (157)
+.++|+|||+++..
T Consensus 141 ~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 141 AKKYLKPSGNMFPT 154 (348)
T ss_dssp GGGGEEEEEEEESC
T ss_pred HHhhcCCCeEEEEe
Confidence 88999999999854
No 168
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.80 E-value=3.5e-09 Score=79.92 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=70.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC--CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA----- 74 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~--~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~----- 74 (157)
|..+..++.. +.+|+++|+++.+++.|++++...+.. .+++++.+|+.+. + ..++||+|++..
T Consensus 94 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~fD~v~~~~~~~~~ 163 (299)
T 3g2m_A 94 GRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-------LDKRFGTVVISSGSINE 163 (299)
T ss_dssp TTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-------CSCCEEEEEECHHHHTT
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-------cCCCcCEEEECCccccc
Confidence 5555556654 679999999999999999999887642 5899999999874 2 156899998642
Q ss_pred -CCcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 75 -DKDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 75 -~~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.......+++.+.+.|+|||.+++....
T Consensus 164 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 164 LDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 1113467889999999999999996543
No 169
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=79.98 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------CcccHH
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------KDNYCN 81 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------~~~~~~ 81 (157)
+|++....+|++||.++ +++.|+++++.+|+.++|+++.+++.++ .+ +++||+|+...- ......
T Consensus 100 ~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe~~DvivsE~~~~~l~~e~~l~~ 170 (376)
T 4hc4_A 100 FCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PEQVDAIVSEWMGYGLLHESMLSS 170 (376)
T ss_dssp HHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCEEEEECCCCBTTBTTTCSHHH
T ss_pred HHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------CccccEEEeecccccccccchhhh
Confidence 45555567999999996 8899999999999999999999999875 12 568999997431 123556
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
++....++|+|||+++.+.+
T Consensus 171 ~l~a~~r~Lkp~G~~iP~~a 190 (376)
T 4hc4_A 171 VLHARTKWLKEGGLLLPASA 190 (376)
T ss_dssp HHHHHHHHEEEEEEEESCEE
T ss_pred HHHHHHhhCCCCceECCccc
Confidence 67777799999999986543
No 170
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.79 E-value=1.6e-08 Score=77.74 Aligned_cols=89 Identities=13% Similarity=0.144 Sum_probs=68.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC------
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD------ 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~------ 75 (157)
|.-+..++. .+..+|+++|++ .+++.|+++++.+++.++++++.+|+.+.. + +.++||+|+++..
T Consensus 50 G~ls~~la~-~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~~~~~D~Ivs~~~~~~l~~ 120 (328)
T 1g6q_1 50 GILSMFAAK-HGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PFPKVDIIISEWMGYFLLY 120 (328)
T ss_dssp SHHHHHHHH-TCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SSSCEEEEEECCCBTTBST
T ss_pred HHHHHHHHH-CCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C-----CCCcccEEEEeCchhhccc
Confidence 433433443 356799999999 599999999999999889999999998741 1 2468999998742
Q ss_pred CcccHHHHHHHHhcccCCeEEEEe
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
......++..+.++|+|||+++.+
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 121 ESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp TCCHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEe
Confidence 223456788888999999999854
No 171
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.79 E-value=4.8e-09 Score=75.19 Aligned_cols=88 Identities=9% Similarity=0.020 Sum_probs=62.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC-----------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG-----------VDHKINFIESEALSVLDQLLKYSENEGSFDYA 70 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I 70 (157)
|.-+..|+.. +.+|+++|+++.+++.|+++..... ...+++++++|+.+.-..- .++||+|
T Consensus 34 G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~~fD~v 105 (203)
T 1pjz_A 34 SQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD------IGHCAAF 105 (203)
T ss_dssp SHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH------HHSEEEE
T ss_pred cHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc------CCCEEEE
Confidence 5556666665 6799999999999999998764310 1247999999998753210 1579999
Q ss_pred EEcCCC-----cccHHHHHHHHhcccCCeEEE
Q 031568 71 FVDADK-----DNYCNYHERLMKLLKVGGIAV 97 (157)
Q Consensus 71 ~iD~~~-----~~~~~~~~~~~~~L~~gG~iv 97 (157)
+..... .....+++.+.++|+|||.++
T Consensus 106 ~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 106 YDRAAMIALPADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred EECcchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 964421 123457889999999999833
No 172
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.78 E-value=1.1e-08 Score=74.34 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=61.1
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-------CcccHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-------~~~~~~~~~~~~ 87 (157)
.+++++|+++.+++.|++++...+ .+++++.+|+.+.. ..++||+|++..+ .......++.+.
T Consensus 55 ~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~ 124 (243)
T 3d2l_A 55 YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--------LPEPVDAITILCDSLNYLQTEADVKQTFDSAA 124 (243)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--------CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHH
Confidence 899999999999999999998876 37999999987641 1468999998641 123456788889
Q ss_pred hcccCCeEEEEe
Q 031568 88 KLLKVGGIAVYD 99 (157)
Q Consensus 88 ~~L~~gG~iv~~ 99 (157)
++|+|||.++++
T Consensus 125 ~~L~pgG~l~~~ 136 (243)
T 3d2l_A 125 RLLTDGGKLLFD 136 (243)
T ss_dssp HHEEEEEEEEEE
T ss_pred HhcCCCeEEEEE
Confidence 999999999984
No 173
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=98.78 E-value=1.2e-08 Score=74.01 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=65.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..|..++... .+|+++|+++.+++.|++++...+ +++++.+|+.+.++. .++||+|+++.......
T Consensus 82 G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~-------~~~fD~v~~~~~~~~~~- 148 (231)
T 1vbf_A 82 GYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEE-------EKPYDRVVVWATAPTLL- 148 (231)
T ss_dssp SHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGG-------GCCEEEEEESSBBSSCC-
T ss_pred CHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccccc-------CCCccEEEECCcHHHHH-
Confidence 55566666653 899999999999999999998766 799999999873321 46899999987544433
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
+.+.+.|+|||++++..
T Consensus 149 --~~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 149 --CKPYEQLKEGGIMILPI 165 (231)
T ss_dssp --HHHHHTEEEEEEEEEEE
T ss_pred --HHHHHHcCCCcEEEEEE
Confidence 46788999999998853
No 174
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.77 E-value=6.2e-09 Score=74.69 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=66.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++.. +.+|+++|+++.+++.|++++...+ +++++.+|+.+.. ..++||+|++....
T Consensus 63 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~ 129 (216)
T 3ofk_A 63 GAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--------TAELFDLIVVAEVLYYLED 129 (216)
T ss_dssp SHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--------CSCCEEEEEEESCGGGSSS
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--------CCCCccEEEEccHHHhCCC
Confidence 4444445544 4699999999999999999887643 7999999998753 15789999987432
Q ss_pred -cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+++.+.++|+|||.+++..
T Consensus 130 ~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 130 MTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 122466889999999999999854
No 175
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=98.77 E-value=1.9e-08 Score=78.06 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=71.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+.+++++|+ +.+++.|++++...++.++++++.+|+.+.+ ...||+|++.....
T Consensus 194 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v~~~~vl~~~~~ 263 (374)
T 1qzz_A 194 GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTADVVLLSFVLLNWSD 263 (374)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCCCEEEEeccccCCCH
Confidence 555666777788999999999 9999999999999998889999999997632 23499999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||.+++.+.
T Consensus 264 ~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 264 EDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEec
Confidence 123688999999999998876544
No 176
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=98.77 E-value=1.9e-08 Score=73.08 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CC----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DK---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~---- 76 (157)
|..+..++.. +.+++++|+++.+++.|++++...+. +++++.+|+.+.. + .++||+|++.. ..
T Consensus 49 G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~------~~~fD~v~~~~~~l~~~~ 116 (246)
T 1y8c_A 49 GNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--I------NRKFDLITCCLDSTNYII 116 (246)
T ss_dssp STTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--C------SCCEEEEEECTTGGGGCC
T ss_pred CHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC--c------cCCceEEEEcCccccccC
Confidence 4445555554 67999999999999999999988775 7999999997641 1 36899999975 21
Q ss_pred --cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....+++.+.+.|+|||.++++
T Consensus 117 ~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 117 DSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 34567788899999999999984
No 177
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.76 E-value=3e-08 Score=78.96 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=69.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-+..++.. ..+|+++|+++++++.|++|++.+++. +++++.+|+.+.++.+.. ..++||+|++|++.....+
T Consensus 298 G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~---~~~~fD~Vv~dPPr~g~~~ 371 (433)
T 1uwv_A 298 GNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPW---AKNGFDKVLLDPARAGAAG 371 (433)
T ss_dssp TTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHH
T ss_pred CHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhh---hcCCCCEEEECCCCccHHH
Confidence 4445555544 789999999999999999999999986 899999999885432100 1457999999998766666
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+. .++|++++.+.
T Consensus 372 ~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 372 VMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp HHHHHH-HHCCSEEEEEE
T ss_pred HHHHHH-hcCCCeEEEEE
Confidence 665554 47888887663
No 178
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=98.76 E-value=9.5e-09 Score=78.71 Aligned_cols=92 Identities=8% Similarity=0.006 Sum_probs=73.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|+ +.+++.|++++...++.++++++.+|+.+. + .++||+|++.....
T Consensus 179 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v~~~~vl~~~~~ 248 (334)
T 2ip2_A 179 GELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIYLLSRIIGDLDE 248 (334)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEEEEESCGGGCCH
T ss_pred hHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEEEEchhccCCCH
Confidence 555666777889999999999 999999999998888777999999999762 2 35799999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 249 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 249 AASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 22378899999999999988865543
No 179
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.76 E-value=1.1e-08 Score=82.43 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHH
Q 031568 11 GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHER 85 (157)
Q Consensus 11 ~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~ 85 (157)
..+..+|+++|+++ +++.|+++++.+|+.++++++.+|+.+. + + .++||+|+++.. .......+..
T Consensus 178 ~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~-~------~~~fD~Ivs~~~~~~~~~e~~~~~l~~ 248 (480)
T 3b3j_A 178 QAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-S-L------PEQVDIIISEPMGYMLFNERMLESYLH 248 (480)
T ss_dssp HTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-C-C------SSCEEEEECCCCHHHHTCHHHHHHHHH
T ss_pred HcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-c-c------CCCeEEEEEeCchHhcCcHHHHHHHHH
Confidence 45778999999998 9999999999999988999999999864 1 1 358999999753 1234556667
Q ss_pred HHhcccCCeEEEEe
Q 031568 86 LMKLLKVGGIAVYD 99 (157)
Q Consensus 86 ~~~~L~~gG~iv~~ 99 (157)
+.++|+|||+++..
T Consensus 249 ~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 249 AKKYLKPSGNMFPT 262 (480)
T ss_dssp GGGGEEEEEEEESC
T ss_pred HHHhcCCCCEEEEE
Confidence 78999999999853
No 180
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=98.76 E-value=3e-08 Score=75.79 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=72.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++..+|+.+++++|++ .+++.|++++...++.++++++.+|+.+. .+ .+.||+|++....
T Consensus 177 G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~D~v~~~~~l~~~~~ 247 (335)
T 2r3s_A 177 GLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDYDLVLLPNFLHHFDV 247 (335)
T ss_dssp CHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCCcEEEEcchhccCCH
Confidence 4455667777889999999999 99999999999999887899999999763 11 3459999985432
Q ss_pred cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+....+++.+.+.|+|||.+++-+..
T Consensus 248 ~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 248 ATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 23357889999999999977765443
No 181
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.75 E-value=8.4e-08 Score=71.92 Aligned_cols=97 Identities=8% Similarity=-0.007 Sum_probs=69.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH---H--hhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ---L--LKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~---~--~~~~~~~~~fD~I~iD~~~ 76 (157)
|..+..++...|+.+|+++|++|.+++.|++++.. .++++++.+|+.+.-.- . ... .+.++||+|++....
T Consensus 92 G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~-~d~~~~d~v~~~~vl 167 (274)
T 2qe6_A 92 QNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM-IDFSRPAAIMLVGML 167 (274)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH-CCTTSCCEEEETTTG
T ss_pred ChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc-CCCCCCEEEEEechh
Confidence 54444455567899999999999999999998843 35899999999753110 0 000 012579999986521
Q ss_pred -----cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 -----DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 -----~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.+.|+|||.+++.+..
T Consensus 168 h~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 168 HYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp GGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred hhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 13577899999999999999987654
No 182
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=98.75 E-value=2.7e-08 Score=76.93 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=72.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++...|+.+++++|+ +.+++.|+++++..++.++++++.+|+.+.+ ...||+|++.....
T Consensus 195 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~D~v~~~~vl~~~~~ 264 (360)
T 1tw3_A 195 GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKADAIILSFVLLNWPD 264 (360)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCEEEEEEESCGGGSCH
T ss_pred cHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCccEEEEcccccCCCH
Confidence 555666777888999999999 9999999999999998889999999997632 23599999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
....+++.+.+.|+|||.+++.+..
T Consensus 265 ~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 265 HDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 1246889999999999988875443
No 183
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.75 E-value=2.1e-08 Score=73.79 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..|..++.. +.+|+++|+++.+++.|++++ . +...+++++.+|+.+. + + +.++||+|++.... +.
T Consensus 51 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 119 (263)
T 2yqz_A 51 GRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDESVHGVIVVHLWHLVPD 119 (263)
T ss_dssp STTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTCEEEEEEESCGGGCTT
T ss_pred CHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCCeeEEEECCchhhcCC
Confidence 5556666654 689999999999999999988 3 3335899999999753 2 1 25689999987532 24
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....++.+.+.|+|||.+++.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 120 WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCcEEEEE
Confidence 577899999999999999885
No 184
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=98.74 E-value=1.8e-08 Score=71.80 Aligned_cols=90 Identities=12% Similarity=0.239 Sum_probs=68.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..++.+++. ++.+++++|+++.+++.|+++++..+ .+++++.+|+.+. + + +.++||+|++....
T Consensus 35 G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 104 (209)
T 2p8j_A 35 DLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL-P-F-----KDESMSFVYSYGTIFHMRK 104 (209)
T ss_dssp SSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC-C-S-----CTTCEEEEEECSCGGGSCH
T ss_pred CHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC-C-C-----CCCceeEEEEcChHHhCCH
Confidence 3333334333 57899999999999999999998776 3689999999763 2 1 24689999986432
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....+++.+.+.|+|||.+++...
T Consensus 105 ~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 105 NDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3456778889999999999998654
No 185
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=98.74 E-value=2.2e-08 Score=74.25 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=63.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH----------c------CCCCcEEEEEccHHHHHHHHhhcCCCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK----------A------GVDHKINFIESEALSVLDQLLKYSENEG 65 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~----------~------~~~~~i~~~~~d~~~~l~~~~~~~~~~~ 65 (157)
|.-+.+|+.. +.+|++||+++.+++.|++.... . ....+++++++|+.+.-.. ..+
T Consensus 80 G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~------~~~ 151 (252)
T 2gb4_A 80 AIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA------NIG 151 (252)
T ss_dssp CTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG------CCC
T ss_pred cHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc------cCC
Confidence 5555566654 67999999999999999875531 0 0125799999999875321 126
Q ss_pred ceeEEEEcCC-----CcccHHHHHHHHhcccCCeEEEE
Q 031568 66 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 66 ~fD~I~iD~~-----~~~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+||+|+.... ......+++.+.++|+|||++++
T Consensus 152 ~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 152 KFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp CEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8999996432 12345689999999999999864
No 186
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.74 E-value=2e-08 Score=79.86 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=65.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-++.++.. +.+|+++|+++++++.|++|++.+++. ++++.+|+.+.+ ..+||+|++|++......
T Consensus 302 G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~---------~~~fD~Vv~dPPr~g~~~ 368 (425)
T 2jjq_A 302 GTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS---------VKGFDTVIVDPPRAGLHP 368 (425)
T ss_dssp THHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC---------CTTCSEEEECCCTTCSCH
T ss_pred hHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC---------ccCCCEEEEcCCccchHH
Confidence 4344445443 679999999999999999999999885 999999998753 237999999997654443
Q ss_pred -HHHHHHhcccCCeEEEEe
Q 031568 82 -YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 -~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+ ..|+|+|++++.
T Consensus 369 ~~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 369 RLVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp HHHHHH-HHHCCSEEEEEE
T ss_pred HHHHHH-HhcCCCcEEEEE
Confidence 55554 469999998874
No 187
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.74 E-value=1.1e-08 Score=74.43 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=65.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. +.+|+++|+++.+++.|++++.. +++++.+|+.+.. .+++||+|++.... +.
T Consensus 54 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 54 GDFTSRLQEH--FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--------LPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp SHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--------CSSCEEEEEEESCGGGCSS
T ss_pred CHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--------cCCcccEEEEhhHHHhhcC
Confidence 4444445544 44899999999999999987643 7999999998762 25789999986532 34
Q ss_pred cHHHHHHHH-hcccCCeEEEEecc
Q 031568 79 YCNYHERLM-KLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~-~~L~~gG~iv~~~~ 101 (157)
...+++.+. +.|+|||.+++...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 578899999 99999999998643
No 188
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=98.74 E-value=2.8e-08 Score=70.48 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=68.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. +.+++++|+++.+++.|++++...+. +++++.+|+.+. + + +.++||+|++.... ..
T Consensus 41 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~ 109 (202)
T 2kw5_A 41 GRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-D-I-----VADAWEGIVSIFCHLPSSL 109 (202)
T ss_dssp THHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-S-C-----CTTTCSEEEEECCCCCHHH
T ss_pred CHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-C-C-----CcCCccEEEEEhhcCCHHH
Confidence 3334444433 67999999999999999999988776 799999998764 1 1 24689999985422 23
Q ss_pred cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++....
T Consensus 110 ~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 110 RQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEec
Confidence 467788999999999999986543
No 189
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=98.74 E-value=8.7e-09 Score=75.17 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=68.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCC-hhHHHHH---HHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVN-RETYEIG---LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~-~~~~~~a---~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..++...++.+|+++|++ +.+++.| ++++++.++. +++++.+|+.+. +... .+.+|.|++.....
T Consensus 36 G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l-~~~~-----~d~v~~i~~~~~~~ 108 (225)
T 3p2e_A 36 GRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL-PFEL-----KNIADSISILFPWG 108 (225)
T ss_dssp SHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC-CGGG-----TTCEEEEEEESCCH
T ss_pred cHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh-hhhc-----cCeEEEEEEeCCCc
Confidence 5556666666789999999999 6666666 8888888875 799999999875 3211 35688888765322
Q ss_pred --------ccHHHHHHHHhcccCCeEEEE
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
.+...++.+.++|+|||.+++
T Consensus 109 ~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 109 TLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred HHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 235678999999999999988
No 190
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=98.74 E-value=1.2e-08 Score=73.77 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=68.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~----~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..++.. +.+|+++|+++.+++.|++++...++. ++++++.+|+.+. + + ..++||+|++.....
T Consensus 42 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~v~~~~~l~ 112 (235)
T 3sm3_A 42 GKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S-F-----HDSSFDFAVMQAFLT 112 (235)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C-S-----CTTCEEEEEEESCGG
T ss_pred CHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C-C-----CCCceeEEEEcchhh
Confidence 4444445544 779999999999999999999887762 4689999998764 2 1 257899999875322
Q ss_pred ---c---cHHHHHHHHhcccCCeEEEEecc
Q 031568 78 ---N---YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 ---~---~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
. ...+++.+.+.|+|||.+++...
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 113 SVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp GCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 2 22789999999999999988643
No 191
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.73 E-value=2.7e-08 Score=77.75 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=60.0
Q ss_pred HHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------
Q 031568 8 FMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------- 77 (157)
Q Consensus 8 l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---------- 77 (157)
++...+.++|+++|+++.+++.|++|++.+|+.++++++++|+.+... +.++||+|++|++..
T Consensus 235 ~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~fD~Ii~npPyg~r~~~~~~~~ 307 (373)
T 3tm4_A 235 LALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ-------YVDSVDFAISNLPYGLKIGKKSMIP 307 (373)
T ss_dssp HHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG-------TCSCEEEEEEECCCC------CCHH
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc-------ccCCcCEEEECCCCCcccCcchhHH
Confidence 444445569999999999999999999999997799999999988531 246899999997521
Q ss_pred -ccHHHHHHHHhcc
Q 031568 78 -NYCNYHERLMKLL 90 (157)
Q Consensus 78 -~~~~~~~~~~~~L 90 (157)
-|..+++.+.+.|
T Consensus 308 ~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 308 DLYMKFFNELAKVL 321 (373)
T ss_dssp HHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHc
Confidence 1456677777877
No 192
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=98.73 E-value=7.6e-08 Score=74.50 Aligned_cols=90 Identities=9% Similarity=0.004 Sum_probs=72.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|+ +.+++.|+++++..++.++++++.+|+.+. + ...+|+|++.....
T Consensus 202 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~D~v~~~~vlh~~~d 271 (359)
T 1x19_A 202 GDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--------YPEADAVLFCRILYSANE 271 (359)
T ss_dssp CHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--------CCCCSEEEEESCGGGSCH
T ss_pred cHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--------CCCCCEEEEechhccCCH
Confidence 555667777889999999999 999999999999998887899999999864 1 23359999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||.+++-+.
T Consensus 272 ~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 272 QLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEec
Confidence 246678999999999999966443
No 193
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.72 E-value=2.1e-08 Score=73.68 Aligned_cols=86 Identities=6% Similarity=0.107 Sum_probs=66.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++... ..+|+++|+++.+++.|++++. ..+++++.+|+.+. + + +.++||+|++... ...
T Consensus 56 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 123 (253)
T 3g5l_A 56 GWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-I-----EPDAYNVVLSSLALHYIAS 123 (253)
T ss_dssp CHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-C-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-C-----CCCCeEEEEEchhhhhhhh
Confidence 44455555543 3399999999999999998775 35899999999763 2 1 2578999998753 235
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
...+++.+.+.|+|||.+++.
T Consensus 124 ~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 124 FDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 678899999999999999985
No 194
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.71 E-value=9.8e-09 Score=75.61 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=70.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++... +.+|+++|+++.+++.|++++... ++++++.+|+.+. + + +.++||+|++....
T Consensus 67 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 135 (266)
T 3ujc_A 67 GGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E-F-----PENNFDLIYSRDAILALSL 135 (266)
T ss_dssp SHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C-C-----CTTCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C-C-----CCCcEEEEeHHHHHHhcCh
Confidence 44455566654 789999999999999999977654 5899999999764 2 1 25789999987532
Q ss_pred cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.....+++.+.++|+|||.+++.+..
T Consensus 136 ~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 136 ENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 34567889999999999999987653
No 195
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.70 E-value=3.4e-08 Score=72.06 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=65.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++.. +.+|+++|+++.+++.|+++ ++++.+|+.+.+..+ +.++||+|++... .
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 53 GEFLELCKEE--GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp THHHHHHHHH--TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTCBSEEEEESCGGGSCG
T ss_pred CHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCCeeEEEECCchhhCCc
Confidence 4344445444 66899999999999999875 788999999876443 2578999998653 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
+....+++.+.+.|+|||.+++...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2457889999999999999998654
No 196
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.69 E-value=5.1e-08 Score=69.19 Aligned_cols=85 Identities=9% Similarity=-0.048 Sum_probs=65.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----C
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----K 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~ 76 (157)
|..+..++.. +.+++++|+++.+++.|+++. .+++++.+|+.+. + + +.++||+|++... .
T Consensus 53 G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 53 GRWTGHLASL--GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-D-----SPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-G-----SCCCEEEEEEESSSTTCCT
T ss_pred CHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-c-----CCCCeEEEEehhhHhcCCH
Confidence 4444445544 669999999999999999872 3789999999874 2 2 2578999998652 2
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....+++.+.+.|+|||.+++...
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~ 142 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFF 142 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3567889999999999999998654
No 197
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=98.68 E-value=9.9e-08 Score=71.48 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=68.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-C--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-D-- 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~-- 75 (157)
|..+..++.. +.+|+++|+++.+++.|++++...+.. .++.+..+|+.+....+. ..++||+|++.+ .
T Consensus 69 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~fD~V~~~g~~l~ 142 (293)
T 3thr_A 69 GVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP----AGDGFDAVICLGNSFA 142 (293)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC----CTTCEEEEEECTTCGG
T ss_pred CHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccc----cCCCeEEEEEcChHHh
Confidence 4444455554 569999999999999999988654432 468899999987642221 257899999862 1
Q ss_pred -Ccc-------cHHHHHHHHhcccCCeEEEEec
Q 031568 76 -KDN-------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 -~~~-------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
... ...+++.+.++|+|||++++..
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 143 HLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 222 6778999999999999999753
No 198
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.68 E-value=3.6e-08 Score=70.42 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=65.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--- 78 (157)
|..+..++.. +.+++++|+++.+++.|++ .+. .+++++.+|+.+.. ..++||+|++......
T Consensus 58 G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~--------~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 58 GYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT--------PDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp SHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC--------CSSCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC--------CCCceeEEEEechhhcCCH
Confidence 4445555555 6799999999999999988 444 47999999998751 2678999998753221
Q ss_pred --cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 --YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 --~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
...+++.+.+.|+|||.+++...
T Consensus 123 ~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 36788999999999999988654
No 199
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=98.67 E-value=1.4e-07 Score=71.65 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=60.7
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCC-----cEEEEEccH----H-HHHHHHhhcCCCCCceeEEEEcCC------C
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEA----L-SVLDQLLKYSENEGSFDYAFVDAD------K 76 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-----~i~~~~~d~----~-~~l~~~~~~~~~~~~fD~I~iD~~------~ 76 (157)
...+|+++|+++.+++.|++.....+... +++++.+|+ . +.++... +.++||+|++-.. .
T Consensus 70 ~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~----~~~~FD~V~~~~~lhy~~~~ 145 (302)
T 2vdw_A 70 EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF----YFGKFNIIDWQFAIHYSFHP 145 (302)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC----CSSCEEEEEEESCGGGTCST
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc----cCCCeeEEEECchHHHhCCH
Confidence 46799999999999999999887765421 267777776 1 2222111 2468999986432 1
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
......++.+.++|+|||++++...
T Consensus 146 ~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 146 RHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2346789999999999999998544
No 200
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.66 E-value=1.1e-08 Score=74.34 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=61.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCC-CCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~-~~~fD~I~iD~~~~~~~ 80 (157)
|..+..++.. +.+|+++|+++.+++.|+++ .++++++.+|+.+.++. . .++||+|++.. ...
T Consensus 60 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~------~~~~~fD~v~~~~---~~~ 122 (226)
T 3m33_A 60 GPDAARFGPQ--AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA------GLGAPFGLIVSRR---GPT 122 (226)
T ss_dssp SHHHHHHGGG--SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT------TCCCCEEEEEEES---CCS
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC------cCCCCEEEEEeCC---CHH
Confidence 4445555555 67999999999999999998 24799999999654431 2 46899999974 345
Q ss_pred HHHHHHHhcccCCeEEE
Q 031568 81 NYHERLMKLLKVGGIAV 97 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv 97 (157)
..++.+.++|+|||.++
T Consensus 123 ~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 123 SVILRLPELAAPDAHFL 139 (226)
T ss_dssp GGGGGHHHHEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEE
Confidence 57788899999999999
No 201
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.66 E-value=2.9e-08 Score=74.13 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=65.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++. ++.+|+++|+++.+++.+++++ ++++++.+|+.+. + ..++||+|++.... ..
T Consensus 69 G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-------~~~~fD~v~~~~~l~~~~d 132 (279)
T 3ccf_A 69 GQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-------VDKPLDAVFSNAMLHWVKE 132 (279)
T ss_dssp SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-------CSSCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-------cCCCcCEEEEcchhhhCcC
Confidence 445555555 7899999999999999998865 4688999999763 2 14689999987532 34
Q ss_pred cHHHHHHHHhcccCCeEEEEecc
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....++.+.+.|+|||.+++...
T Consensus 133 ~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 133 PEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEec
Confidence 57789999999999999998543
No 202
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.66 E-value=4.7e-08 Score=72.54 Aligned_cols=95 Identities=7% Similarity=-0.032 Sum_probs=68.9
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChh------HHHHHHHHHHHcCCCCcEEEEEcc-HHHH-HHHHhhcCCCCCceeEEEE
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSV-LDQLLKYSENEGSFDYAFV 72 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~------~~~~a~~~~~~~~~~~~i~~~~~d-~~~~-l~~~~~~~~~~~~fD~I~i 72 (157)
|..+..++... |..+|+++|+++. +++.|+++++..++.++++++.+| .... ++ + +.++||+|++
T Consensus 55 G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~-----~~~~fD~v~~ 128 (275)
T 3bkx_A 55 GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-I-----ADQHFDRVVL 128 (275)
T ss_dssp SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-G-----TTCCCSEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-C-----CCCCEEEEEE
Confidence 55556666653 6799999999997 999999999998887789999998 3211 11 1 2578999998
Q ss_pred cCCC---cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 73 DADK---DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 73 D~~~---~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
.... +....+++.+..+++|||.+++.+..
T Consensus 129 ~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 129 AHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp ESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred ccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 6532 23344566666677779999986544
No 203
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.65 E-value=1.9e-08 Score=72.25 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=64.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~ 78 (157)
|..+..++.. +.+++++|+++.+++.+++++. .+++++.+|+.+.. ..++||+|++..... .
T Consensus 57 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~ 121 (220)
T 3hnr_A 57 GNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE--------VPTSIDTIVSTYAFHHLTD 121 (220)
T ss_dssp SHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC--------CCSCCSEEEEESCGGGSCH
T ss_pred CHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC--------CCCCeEEEEECcchhcCCh
Confidence 4334444444 7899999999999999998764 47899999998641 137899999976322 2
Q ss_pred c--HHHHHHHHhcccCCeEEEEeccc
Q 031568 79 Y--CNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 ~--~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
. ..+++.+.+.|+|||.+++.+..
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 2 23789999999999999987543
No 204
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.64 E-value=1.4e-08 Score=75.68 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=63.6
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC--cc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DN 78 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~--~~ 78 (157)
.|..|..|+.. +.+|+++|+++.|++.|++ .++++++++|+.+. + + ++++||+|++.... -.
T Consensus 50 tG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~-~-----~~~sfD~v~~~~~~h~~~ 113 (257)
T 4hg2_A 50 SGQASLGLAEF--FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G-L-----PPASVDVAIAAQAMHWFD 113 (257)
T ss_dssp TTTTHHHHHTT--CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C-C-----CSSCEEEEEECSCCTTCC
T ss_pred CCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c-c-----cCCcccEEEEeeehhHhh
Confidence 36667667654 5799999999999987754 24799999999764 2 2 36789999986432 23
Q ss_pred cHHHHHHHHhcccCCeEEEEe
Q 031568 79 YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+.++.+.|+|||++++-
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 567899999999999999763
No 205
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.62 E-value=4.5e-08 Score=71.71 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=66.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++... ..+|+++|+++.+++.|++++... .+++++.+|+.+. + + +.++||+|++....
T Consensus 105 G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 173 (254)
T 1xtp_A 105 GRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTYDLIVIQWTAIYLTD 173 (254)
T ss_dssp THHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCeEEEEEcchhhhCCH
Confidence 33344444443 678999999999999999987654 5799999999764 2 1 25689999986532
Q ss_pred cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....+++.+.+.|+|||++++...
T Consensus 174 ~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 174 ADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2346788899999999999988653
No 206
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.61 E-value=4.2e-07 Score=68.22 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=60.1
Q ss_pred cccHHHHHhhCCCcEEEEEeC-ChhHHHHHHHHH-----HHcCCC----CcEEEEEccHH----HHHHHHhhcCCCCCce
Q 031568 2 HLPTKLFMTGNKILQITAIDV-NRETYEIGLPII-----KKAGVD----HKINFIESEAL----SVLDQLLKYSENEGSF 67 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~-~~~~~~~a~~~~-----~~~~~~----~~i~~~~~d~~----~~l~~~~~~~~~~~~f 67 (157)
|..+..++.. ...+|+++|+ ++.+++.|++|+ +..++. ++++++..+.. +..+.+. .++|
T Consensus 91 G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~f 164 (281)
T 3bzb_A 91 GLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTG-----LQRF 164 (281)
T ss_dssp SHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHS-----CSSB
T ss_pred cHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhcc-----CCCC
Confidence 4445544443 4459999999 899999999999 555554 47888855432 2222211 4689
Q ss_pred eEEEE-cCC--CcccHHHHHHHHhccc---C--CeEEEE
Q 031568 68 DYAFV-DAD--KDNYCNYHERLMKLLK---V--GGIAVY 98 (157)
Q Consensus 68 D~I~i-D~~--~~~~~~~~~~~~~~L~---~--gG~iv~ 98 (157)
|+|++ |.. .+....+++.+.++|+ | ||.+++
T Consensus 165 D~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 165 QVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp SEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred CEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 99987 542 3346778999999999 9 997655
No 207
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=98.61 E-value=1.5e-07 Score=71.45 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=69.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC------CCCcEEEEEccHHHHH--HHHhhcCCCCCceeEEEEc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVD 73 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~------~~~~i~~~~~d~~~~l--~~~~~~~~~~~~fD~I~iD 73 (157)
|.-+..++. .+..+++++|+++.+++.|+++....+ ...+++++.+|+.+.. ..+. .+.++||+|++.
T Consensus 46 G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~~~fD~V~~~ 121 (313)
T 3bgv_A 46 GGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR---DPQMCFDICSCQ 121 (313)
T ss_dssp TTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS---STTCCEEEEEEE
T ss_pred cHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc---cCCCCEEEEEEe
Confidence 444555554 468899999999999999999987652 2247999999997641 0010 013489999987
Q ss_pred CCC-------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 74 ADK-------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 74 ~~~-------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
... .....+++.+.+.|+|||++++...
T Consensus 122 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 543 1235788899999999999998543
No 208
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=98.61 E-value=1.5e-07 Score=67.49 Aligned_cols=88 Identities=9% Similarity=0.074 Sum_probs=64.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--Cccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~ 79 (157)
|..+..++.. +.+++++|+++.+++.|+++ .+++++.+|+.+...... ...++||+|++... ....
T Consensus 64 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~---~~~~~fD~v~~~~~l~~~~~ 131 (227)
T 3e8s_A 64 GWLLRALADR--GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV---PVGKDYDLICANFALLHQDI 131 (227)
T ss_dssp CHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS---CCCCCEEEEEEESCCCSSCC
T ss_pred CHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc---ccCCCccEEEECchhhhhhH
Confidence 4344444444 77999999999999999986 357789999887632111 12346999998653 3456
Q ss_pred HHHHHHHHhcccCCeEEEEecc
Q 031568 80 CNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+++.+.+.|+|||.+++...
T Consensus 132 ~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 132 IELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEEec
Confidence 7899999999999999998654
No 209
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.61 E-value=3.3e-08 Score=70.43 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=65.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++...+ .+++++|+++.+++.|++++.. .++++++.+|+.+. + + +.++||+|++....
T Consensus 54 G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~ 122 (215)
T 2pxx_A 54 SALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F-----PSASFDVVLEKGTLDALLA 122 (215)
T ss_dssp CSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S-----CSSCEEEEEEESHHHHHTT
T ss_pred cHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C-----CCCcccEEEECcchhhhcc
Confidence 444555555433 3999999999999999998764 24799999998764 2 2 24689999975421
Q ss_pred -------------cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 -------------DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 -------------~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+++.+.++|+|||.+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp TCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 133678888999999999999854
No 210
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=98.61 E-value=1.4e-08 Score=74.86 Aligned_cols=96 Identities=17% Similarity=0.042 Sum_probs=66.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCC----------------------------CCcE-EEEEccHHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGV----------------------------DHKI-NFIESEALS 52 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~----------------------------~~~i-~~~~~d~~~ 52 (157)
|.-+..++...+ .+|+++|+++.+++.|++++...+. ..++ +++.+|+.+
T Consensus 68 G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~ 146 (265)
T 2i62_A 68 TIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQ 146 (265)
T ss_dssp CCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTS
T ss_pred cHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeecc
Confidence 333444444322 5999999999999999998865431 1137 899999987
Q ss_pred HHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHHhcccCCeEEEEecc
Q 031568 53 VLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 53 ~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..+... ...++||+|++..... .+..+++.+.++|+|||.+++...
T Consensus 147 ~~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 147 SQPLGG---VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp SSTTTT---CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCc---cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 432110 0126899999865322 456788899999999999998654
No 211
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.60 E-value=2.8e-08 Score=71.45 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=64.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHH----HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPI----IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~----~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..+..++...|+.+|+++|+++.+++.+.++ ....++. +++++++|+.+. +. ..+. |.|++.....
T Consensus 39 G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~------~~~~-d~v~~~~~~~ 109 (218)
T 3mq2_A 39 GKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP------LSGV-GELHVLMPWG 109 (218)
T ss_dssp CHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS------CCCE-EEEEEESCCH
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC------CCCC-CEEEEEccch
Confidence 66677788888899999999999988864333 3344553 899999999873 31 1344 7777544211
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.|+|||.+++.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 110 SLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp HHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred hhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 2267889999999999999984
No 212
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.59 E-value=1.8e-07 Score=64.48 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=64.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++... .+++++|+++.+++.++++ .++++++.+| ++ + +.++||+|++.... +.
T Consensus 29 G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d----~~-~-----~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 29 GFYCKYLLEFA--TKLYCIDINVIALKEVKEK------FDSVITLSDP----KE-I-----PDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp CTTHHHHHTTE--EEEEEECSCHHHHHHHHHH------CTTSEEESSG----GG-S-----CTTCEEEEEEESCSTTCSC
T ss_pred CHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC----CC-C-----CCCceEEEEEccchhcccC
Confidence 44555565543 4999999999999999998 2479999999 22 1 25789999987532 34
Q ss_pred cHHHHHHHHhcccCCeEEEEecccC
Q 031568 79 YCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
...+++.+.+.|+|||.+++.+...
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 5788999999999999999875543
No 213
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=98.59 E-value=7.9e-08 Score=75.97 Aligned_cols=66 Identities=20% Similarity=0.112 Sum_probs=53.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++.++.. +.+|++||+|+.+++.|++|++.+ |+ ++++++++|+.++++... .++||+||+|++
T Consensus 105 G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~fDvV~lDPP 172 (410)
T 3ll7_A 105 GIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHPDYIYVDPA 172 (410)
T ss_dssp SHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCCSEEEECCE
T ss_pred hHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCceEEEECCC
Confidence 4445445443 689999999999999999999998 88 589999999998776532 357999999974
No 214
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.58 E-value=6.9e-08 Score=68.97 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=63.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++.. +.+++++|+++.+++.+++++ +++++.+|+.+.. ..++||+|++.....
T Consensus 55 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 55 GYQAEAMLAA--GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCSCEEEEEECSCGGGSCH
T ss_pred CHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCCcEEEEEecCchhhcCH
Confidence 4344445444 679999999999999999987 3567888887642 167899999875322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecc
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
....+++.+.+.|+|||.+++...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 445788999999999999998643
No 215
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.57 E-value=6.2e-08 Score=72.15 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=54.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCCh-------hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC--CceeEEEE
Q 031568 2 HLPTKLFMTGNKILQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE--GSFDYAFV 72 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~-------~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~--~~fD~I~i 72 (157)
|.-+..++.. +++|+++|+++ ++++.|++|++.+++.++++++++|+.++++.+. . ++||+|++
T Consensus 95 G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~-----~~~~~fD~V~~ 167 (258)
T 2r6z_A 95 GRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV-----KTQGKPDIVYL 167 (258)
T ss_dssp CHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH-----HHHCCCSEEEE
T ss_pred CHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhh-----ccCCCccEEEE
Confidence 4444555553 67999999999 9999999999888876679999999999887653 2 68999999
Q ss_pred cCC
Q 031568 73 DAD 75 (157)
Q Consensus 73 D~~ 75 (157)
|+.
T Consensus 168 dP~ 170 (258)
T 2r6z_A 168 DPM 170 (258)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
No 216
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.55 E-value=4.1e-07 Score=64.71 Aligned_cols=83 Identities=5% Similarity=0.043 Sum_probs=62.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|.-+..++.. +..+|+++|+++.+++.|+++++..++ +++++.+|+.+. .++||+|++|++.
T Consensus 61 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~----------~~~~D~v~~~~p~~~~~~ 127 (207)
T 1wy7_A 61 GVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----------NSRVDIVIMNPPFGSQRK 127 (207)
T ss_dssp CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----------CCCCSEEEECCCCSSSST
T ss_pred CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc----------CCCCCEEEEcCCCccccC
Confidence 4334444444 456899999999999999999998887 799999999873 3489999999852
Q ss_pred cccHHHHHHHHhcccCCeEEEEe
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....+++.+.+.+ |++++..
T Consensus 128 ~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 128 HADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp TTTHHHHHHHHHHC--SEEEEEE
T ss_pred CchHHHHHHHHHhc--CcEEEEE
Confidence 23456788888887 6666543
No 217
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.55 E-value=9.7e-08 Score=69.38 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=65.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++.. +.+|+++|+++.+++.++++. ...+++++.+|+.+. + + +.++||+|++... .+.
T Consensus 65 G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 131 (242)
T 3l8d_A 65 GYGTYKLSRT--GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL-P-F-----ENEQFEAIMAINSLEWTEE 131 (242)
T ss_dssp SHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC-S-S-----CTTCEEEEEEESCTTSSSC
T ss_pred CHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC-C-C-----CCCCccEEEEcChHhhccC
Confidence 4344445544 779999999999999998864 235799999999864 2 1 2578999998653 234
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+|||.+++..
T Consensus 132 ~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 132 PLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEE
Confidence 5678999999999999999865
No 218
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.54 E-value=6.2e-08 Score=71.55 Aligned_cols=73 Identities=8% Similarity=0.027 Sum_probs=58.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-CC------cccHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-DK------DNYCNYHERL 86 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-~~------~~~~~~~~~~ 86 (157)
+.+|+++|+++.+++.|++++. +++++.+|+.+.. ..++||+|++.. .. .....+++.+
T Consensus 72 ~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~--------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~ 137 (263)
T 3pfg_A 72 FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS--------LGRRFSAVTCMFSSIGHLAGQAELDAALERF 137 (263)
T ss_dssp SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC--------CSCCEEEEEECTTGGGGSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC--------ccCCcCEEEEcCchhhhcCCHHHHHHHHHHH
Confidence 5699999999999999998752 6899999998641 146899999875 21 2344678899
Q ss_pred HhcccCCeEEEEec
Q 031568 87 MKLLKVGGIAVYDN 100 (157)
Q Consensus 87 ~~~L~~gG~iv~~~ 100 (157)
.++|+|||.++++.
T Consensus 138 ~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 138 AAHVLPDGVVVVEP 151 (263)
T ss_dssp HHTEEEEEEEEECC
T ss_pred HHhcCCCcEEEEEe
Confidence 99999999999974
No 219
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=98.54 E-value=8.1e-07 Score=66.74 Aligned_cols=88 Identities=8% Similarity=0.077 Sum_probs=62.5
Q ss_pred hhCCCcEE--EEEeCChhHHHHHHHHHHHc-CCCCcE--EEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHH
Q 031568 10 TGNKILQI--TAIDVNRETYEIGLPIIKKA-GVDHKI--NFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCN 81 (157)
Q Consensus 10 ~~~~~~~v--~~ve~~~~~~~~a~~~~~~~-~~~~~i--~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~ 81 (157)
...|+.+| +++|++++|++.|++.++.. ++. ++ ++..+++.+........ .++++||+|++... .++...
T Consensus 76 ~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~d~~~ 153 (292)
T 2aot_A 76 AQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLEK-KELQKWDFIHMIQMLYYVKDIPA 153 (292)
T ss_dssp HHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHTT-TCCCCEEEEEEESCGGGCSCHHH
T ss_pred hhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhccc-cCCCceeEEEEeeeeeecCCHHH
Confidence 34577765 99999999999999998764 443 44 55677776553211000 01568999998653 335677
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.++|+|||.+++-
T Consensus 154 ~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 154 TLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp HHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEE
Confidence 899999999999999874
No 220
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=98.51 E-value=4.4e-08 Score=73.00 Aligned_cols=67 Identities=7% Similarity=0.083 Sum_probs=51.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcC--------CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD 73 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~--------~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD 73 (157)
|..++.++.. +++|++||+++.++++++++++... +.++++++++|+.++++.+ .++||+||+|
T Consensus 100 G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~------~~~fDvV~lD 171 (258)
T 2oyr_A 100 GRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------TPRPQVVYLD 171 (258)
T ss_dssp CHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC------SSCCSEEEEC
T ss_pred CHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC------cccCCEEEEc
Confidence 4445555555 6689999999999999999887542 3257999999999987654 3479999999
Q ss_pred CCC
Q 031568 74 ADK 76 (157)
Q Consensus 74 ~~~ 76 (157)
+..
T Consensus 172 P~y 174 (258)
T 2oyr_A 172 PMF 174 (258)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 221
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.51 E-value=1.4e-07 Score=68.50 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=65.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. +..+++++|+++.+++.|+++... .+++++.+|+.+. + + +.++||+|++.... ..
T Consensus 55 G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 122 (243)
T 3bkw_A 55 GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-H-L-----PQDSFDLAYSSLALHYVED 122 (243)
T ss_dssp CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-C-C-----CTTCEEEEEEESCGGGCSC
T ss_pred CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-c-C-----CCCCceEEEEeccccccch
Confidence 4444445544 334999999999999999987643 3799999999764 2 1 25689999987532 34
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+|||.+++..
T Consensus 123 ~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 123 VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCcCcEEEEEe
Confidence 5778999999999999999853
No 222
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.51 E-value=2.3e-07 Score=67.66 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=65.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH--HhhcCCCCCceeEEEEcCCC---
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ--LLKYSENEGSFDYAFVDADK--- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~--~~~~~~~~~~fD~I~iD~~~--- 76 (157)
|..+..++...+ +|+++|+++.+++.|++++. ..+++++.+|+.+.... +.. ...||+|++....
T Consensus 68 G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~----~~~~d~v~~~~~~~~~ 137 (245)
T 3ggd_A 68 GTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHS----EIGDANIYMRTGFHHI 137 (245)
T ss_dssp SHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHH----HHCSCEEEEESSSTTS
T ss_pred CHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc----ccCceEEECccccccccccccc----ccCccEEEEcchhhcC
Confidence 555666766644 89999999999999999772 23799999999774321 110 1359999987532
Q ss_pred --cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+++.+.+.|+|||.+++-+
T Consensus 138 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 138 PVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp CGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 245688999999999999866543
No 223
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=98.49 E-value=7.6e-08 Score=72.22 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=64.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc-----------------CCC------------CcEEEEEccHHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA-----------------GVD------------HKINFIESEALS 52 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~-----------------~~~------------~~i~~~~~d~~~ 52 (157)
|. +..+++..++.+|+++|+++.+++.|+++++.. +.. ..++++.+|+.+
T Consensus 83 G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 161 (289)
T 2g72_A 83 TV-YQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQ 161 (289)
T ss_dssp CC-GGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTS
T ss_pred Ch-HHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCC
Confidence 44 333444445779999999999999999876432 100 025677788876
Q ss_pred HHHHHhhcCCCCCceeEEEEcCCC-------cccHHHHHHHHhcccCCeEEEEecc
Q 031568 53 VLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 53 ~l~~~~~~~~~~~~fD~I~iD~~~-------~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.++.-. ...+.++||+|++.... ..+...++.+.++|+|||.+++...
T Consensus 162 ~~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 162 PQPLGA-GSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp SSTTCS-SCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCccc-cccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 332100 00013569999986532 2456788999999999999998643
No 224
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.48 E-value=1.8e-07 Score=67.71 Aligned_cols=84 Identities=7% Similarity=0.051 Sum_probs=62.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----C-
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----K- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----~- 76 (157)
|..+..++... .+++++|+++.+++.|++++ ++++++.+|+.+. + ..++||+|++... .
T Consensus 52 G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-------~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 52 GTHLEHFTKEF--GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDF-R-------LGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp SHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTC-C-------CSSCEEEEEECTTGGGGCC
T ss_pred CHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHc-c-------cCCCCcEEEEcCchHhhcC
Confidence 44455555553 39999999999999999864 3689999999763 1 1468999995321 1
Q ss_pred --cccHHHHHHHHhcccCCeEEEEecc
Q 031568 77 --DNYCNYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 77 --~~~~~~~~~~~~~L~~gG~iv~~~~ 101 (157)
.....+++.+.+.|+|||.++++..
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2346788899999999999999753
No 225
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=98.48 E-value=3.8e-07 Score=68.43 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=65.5
Q ss_pred HHHHh-hCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee-----EEEEcCCCc--
Q 031568 6 KLFMT-GNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD-----YAFVDADKD-- 77 (157)
Q Consensus 6 ~~l~~-~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD-----~I~iD~~~~-- 77 (157)
..++. ..|+++|++||.||.|++.||+.+...+ ..+++++++|+.+.-.-+... ...+.|| .|++.+...
T Consensus 96 ~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~-~~~~~~D~~~p~av~~~avLH~l 173 (277)
T 3giw_A 96 HEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAP-ELRDTLDLTRPVALTVIAIVHFV 173 (277)
T ss_dssp HHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCH-HHHTTCCTTSCCEEEEESCGGGS
T ss_pred HHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccc-ccccccCcCCcchHHhhhhHhcC
Confidence 33443 5799999999999999999999886543 247999999998752111000 0013455 466654221
Q ss_pred ----ccHHHHHHHHhcccCCeEEEEeccc
Q 031568 78 ----NYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 78 ----~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
....+++.+.+.|+|||++++.+..
T Consensus 174 ~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 174 LDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp CGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred CchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 1356899999999999999987653
No 226
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.46 E-value=2.9e-07 Score=64.30 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=62.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-C----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K---- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-~---- 76 (157)
|..+..++.. +.+++++|+++.+++.+++++ .+++++.+|+.+. + + +.++||+|++.+. .
T Consensus 58 G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 58 GRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD-Q-I-----SETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp THHHHHHHHT--TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS-C-C-----CCCCEEEEEECCCCGGGSC
T ss_pred CHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC-C-C-----CCCceeEEEECCcHHhhcC
Confidence 3334444444 679999999999999999876 2588999998763 1 1 2468999999742 1
Q ss_pred -cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 -DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 -~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+....+++.+.+.|+|||.+++..
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 223678888999999999999854
No 227
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.45 E-value=6.3e-07 Score=63.49 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=57.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-+..++.. +..+|+++|+++.+++.|++++. +++++.+|+.+. .++||+|+++++..
T Consensus 63 G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 63 GILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp CHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCEEEEEECCCC-----
T ss_pred cHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CCCeeEEEECCCchhccC
Confidence 4444444444 55689999999999999999875 689999999873 35799999997521
Q ss_pred -ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....+++.+.+.+ |+++++.
T Consensus 126 ~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 126 HSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp --CHHHHHHHHHHE--EEEEEEE
T ss_pred chhHHHHHHHHHhc--CcEEEEE
Confidence 2346788888877 5655554
No 228
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=98.45 E-value=3e-07 Score=63.07 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=59.6
Q ss_pred cccHHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-----LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..+..++.. .++.+++++|+++ +++. .+++++.+|+.+. ++... +.++||+|+++..
T Consensus 34 G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~----~~~~~D~i~~~~~ 97 (180)
T 1ej0_A 34 GGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV----GDSKVQVVMSDMA 97 (180)
T ss_dssp CHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH----TTCCEEEEEECCC
T ss_pred CHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC----CCCceeEEEECCC
Confidence 4455566665 3679999999999 6532 4799999999764 12111 2468999999864
Q ss_pred Cc---cc-----------HHHHHHHHhcccCCeEEEEec
Q 031568 76 KD---NY-----------CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~---~~-----------~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.. .. ..+++.+.++|+|||.+++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 11 577888899999999999854
No 229
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=98.44 E-value=3.1e-07 Score=68.00 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=64.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..+..++...++.+++++|+++.+++.|+++. .++.++.+|+.+. + + ..++||+|++.... .
T Consensus 97 G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~~----~ 159 (269)
T 1p91_A 97 GYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSMDAIIRIYAP----C 159 (269)
T ss_dssp STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCEEEEEEESCC----C
T ss_pred CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C-----CCCceeEEEEeCCh----h
Confidence 566777777767889999999999999998864 3678999998653 2 1 24689999976542 2
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.++|+|||.+++..
T Consensus 160 ~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 160 KAEELARVVKPGGWVITAT 178 (269)
T ss_dssp CHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHhcCCCcEEEEEE
Confidence 4788889999999998753
No 230
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.44 E-value=3.1e-07 Score=70.84 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=61.2
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----------------
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------- 78 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---------------- 78 (157)
.+++++|+++.+++.|+.|+...|+ +++++++|+.+.. ..++||+|+.+++...
T Consensus 160 ~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~ 229 (344)
T 2f8l_A 160 VHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREE 229 (344)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSS
T ss_pred ceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCC
Confidence 7999999999999999999998887 5889999987632 1468999999976211
Q ss_pred -----cHHHHHHHHhcccCCeEEEEe
Q 031568 79 -----YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 -----~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+..+++.+.+.|+|||++++.
T Consensus 230 g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 230 GHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp SCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 125788899999999998774
No 231
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.43 E-value=3.4e-07 Score=72.08 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=57.6
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~ 87 (157)
.+|+++|+++.+++.|++|++.+|+.++++++++|+.+... .++||+|++|++.. ....++..+.
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg 335 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMG 335 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHH
Confidence 67999999999999999999999998889999999987521 45899999998632 2233444444
Q ss_pred hcccC--CeEEEE
Q 031568 88 KLLKV--GGIAVY 98 (157)
Q Consensus 88 ~~L~~--gG~iv~ 98 (157)
+.|++ ||.+.+
T Consensus 336 ~~lk~~~g~~~~i 348 (393)
T 3k0b_A 336 IVYKRMPTWSVYV 348 (393)
T ss_dssp HHHHTCTTCEEEE
T ss_pred HHHhcCCCCEEEE
Confidence 44444 665544
No 232
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=98.42 E-value=7.4e-07 Score=66.94 Aligned_cols=80 Identities=14% Similarity=0.175 Sum_probs=63.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHh-
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMK- 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~- 88 (157)
++.+++.+|.+++.++..++|++. .++++++.+|+.+.+..+.. +..+||+||+|++-. .+...++.+.+
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~---~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~ 185 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLP---PPEKRGLIFIDPSYERKEEYKEIPYAIKNA 185 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCS---CTTSCEEEEECCCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcC---CCCCccEEEECCCCCCCcHHHHHHHHHHHh
Confidence 578999999999999999999975 35899999999998887642 234799999999643 45555555543
Q ss_pred -cccCCeEEEE
Q 031568 89 -LLKVGGIAVY 98 (157)
Q Consensus 89 -~L~~gG~iv~ 98 (157)
.+.++|++++
T Consensus 186 ~~r~~~Gi~v~ 196 (283)
T 2oo3_A 186 YSKFSTGLYCV 196 (283)
T ss_dssp HHHCTTSEEEE
T ss_pred CccCCCeEEEE
Confidence 6788999886
No 233
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.40 E-value=6e-07 Score=70.45 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=58.5
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~ 87 (157)
.+|+++|+|+.+++.|++|++.+|+.++++++++|+.+... .++||+|++|++.. ....++..+.
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg 328 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMG 328 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHH
Confidence 67999999999999999999999998889999999987521 35899999998631 2344555555
Q ss_pred hcccC--CeEEEE
Q 031568 88 KLLKV--GGIAVY 98 (157)
Q Consensus 88 ~~L~~--gG~iv~ 98 (157)
+.|++ ||.+.+
T Consensus 329 ~~lk~~~g~~~~i 341 (384)
T 3ldg_A 329 ETFAPLKTWSQFI 341 (384)
T ss_dssp HHHTTCTTSEEEE
T ss_pred HHHhhCCCcEEEE
Confidence 55554 665543
No 234
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=98.40 E-value=2.2e-07 Score=66.30 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=60.1
Q ss_pred Cc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhc
Q 031568 14 IL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKL 89 (157)
Q Consensus 14 ~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~ 89 (157)
+. +++++|+++.+++.+++++ .+++++.+|+.+. + + +.++||+|++... .+.....++.+.+.
T Consensus 55 ~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~ 121 (211)
T 2gs9_A 55 PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F-----PGESFDVVLLFTTLEFVEDVERVLLEARRV 121 (211)
T ss_dssp CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S-----CSSCEEEEEEESCTTTCSCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C-----CCCcEEEEEEcChhhhcCCHHHHHHHHHHH
Confidence 45 9999999999999999876 4788999998763 2 1 2568999998753 23467789999999
Q ss_pred ccCCeEEEEecc
Q 031568 90 LKVGGIAVYDNT 101 (157)
Q Consensus 90 L~~gG~iv~~~~ 101 (157)
|+|||.+++...
T Consensus 122 L~pgG~l~i~~~ 133 (211)
T 2gs9_A 122 LRPGGALVVGVL 133 (211)
T ss_dssp EEEEEEEEEEEE
T ss_pred cCCCCEEEEEec
Confidence 999999998644
No 235
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.40 E-value=1.1e-06 Score=66.87 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|--|..++...|+++|+++|+|+.+++.|+++++.+| ++++++++|+.+....+.+. ..++||.|++|.+..
T Consensus 38 G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 38 GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIEKVDGILMDLGVS 109 (301)
T ss_dssp SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCSCEEEEEEECSCC
T ss_pred CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCCCCCEEEEcCccc
Confidence 4456667777778999999999999999999998887 58999999987753222210 015799999998643
No 236
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=98.38 E-value=1.4e-07 Score=70.09 Aligned_cols=85 Identities=21% Similarity=0.060 Sum_probs=59.5
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCC----------------------------CCcEE-EEEccHHHHHHHHhhcCCCCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGV----------------------------DHKIN-FIESEALSVLDQLLKYSENEG 65 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~----------------------------~~~i~-~~~~d~~~~l~~~~~~~~~~~ 65 (157)
.+|+++|+++.+++.|+++++.... ..+++ ++.+|+.+..+... ...+
T Consensus 79 ~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~---~~~~ 155 (263)
T 2a14_A 79 QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP---AVLP 155 (263)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT---CCCC
T ss_pred cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCc---cccC
Confidence 4799999999999999998865421 01244 88888876322100 0145
Q ss_pred ceeEEEEcCC-------CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 66 SFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 66 ~fD~I~iD~~-------~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+||+|++... .+.+...++.+.++|+|||.+++....
T Consensus 156 ~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 156 LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 8999998532 134457788888999999999997543
No 237
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.35 E-value=6.1e-07 Score=70.41 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=57.7
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~~ 87 (157)
.+|+++|+++.+++.|++|++.+|+.+++++.++|+.+... .++||+|++|++.. ....++..+.
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 68999999999999999999999998889999999987532 45899999998742 2233455444
Q ss_pred hcccC--CeEEEE
Q 031568 88 KLLKV--GGIAVY 98 (157)
Q Consensus 88 ~~L~~--gG~iv~ 98 (157)
+.|++ |+.+.+
T Consensus 330 ~~lk~~~g~~~~i 342 (385)
T 3ldu_A 330 YAFRKLKNWSYYL 342 (385)
T ss_dssp HHHHTSBSCEEEE
T ss_pred HHHhhCCCCEEEE
Confidence 44544 555443
No 238
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=98.34 E-value=1.5e-06 Score=67.31 Aligned_cols=90 Identities=18% Similarity=0.105 Sum_probs=68.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC-----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~----- 76 (157)
|..+..++.++|+.+++..|. |++++.|+++++..+ .+||+++.+|+.+. +...+|++++-.-.
T Consensus 191 G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~~D~~~~~~vlh~~~d 259 (353)
T 4a6d_A 191 GALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPEADLYILARVLHDWAD 259 (353)
T ss_dssp SHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS---------CCCCCSEEEEESSGGGSCH
T ss_pred CHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC---------CCCCceEEEeeeecccCCH
Confidence 555666888999999999997 899999999887555 57999999998752 13468999985422
Q ss_pred cccHHHHHHHHhcccCCeEEEEeccc
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+.-..+++.+.+.|+|||.+++-+..
T Consensus 260 ~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 260 GKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 12346789999999999987775544
No 239
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.30 E-value=5.3e-07 Score=62.62 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=51.2
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------------ccHHHH
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYH 83 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------------~~~~~~ 83 (157)
+|+++|+++.+++. .++++++.+|+.+.++ .++||+|++++... .....+
T Consensus 46 ~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~ 107 (170)
T 3q87_B 46 TVVSTDLNIRALES----------HRGGNLVRADLLCSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVI 107 (170)
T ss_dssp EEEEEESCHHHHHT----------CSSSCEEECSTTTTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHH
T ss_pred cEEEEECCHHHHhc----------ccCCeEEECChhhhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHH
Confidence 99999999999987 3478999999987322 46899999986432 124567
Q ss_pred HHHHhcccCCeEEEEec
Q 031568 84 ERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~~ 100 (157)
+.+.+.+ |||.+++..
T Consensus 108 ~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 108 DRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp HHHHHHC-CSSEEEEEE
T ss_pred HHHHhhC-CCCEEEEEE
Confidence 7777777 999998754
No 240
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.30 E-value=1.7e-07 Score=69.30 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=61.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++. ++.+|+++|+++.+++.|+++. +++++.+|+.+. + + +.++||+|++... ...
T Consensus 46 G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~ 109 (261)
T 3ege_A 46 GGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-A-L-----PDKSVDGVISILAIHHFSH 109 (261)
T ss_dssp SHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-C-S-----CTTCBSEEEEESCGGGCSS
T ss_pred cHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-C-C-----CCCCEeEEEEcchHhhccC
Confidence 444444543 7899999999999988776543 799999999763 2 1 2578999998753 245
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+ ||.+++-.
T Consensus 110 ~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 110 LEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp HHHHHHHHHHHBC-SSCEEEEE
T ss_pred HHHHHHHHHHHhC-CcEEEEEE
Confidence 6788999999999 99665543
No 241
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=98.29 E-value=1.1e-06 Score=65.57 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=56.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|.-|..++.. +.+|+++|+++.|++.|++++..... +..+...+.. ..... .++||+|+++....
T Consensus 57 G~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~-~~~~~------~~~fD~Vv~~~~l~~~~~ 125 (261)
T 3iv6_A 57 RFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE-IPKEL------AGHFDFVLNDRLINRFTT 125 (261)
T ss_dssp HHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC-CCGGG------TTCCSEEEEESCGGGSCH
T ss_pred hHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc-ccccc------CCCccEEEEhhhhHhCCH
Confidence 4444455543 68999999999999999998865411 2233222220 00111 46899999986432
Q ss_pred -ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.....+..+.++| |||.+++.
T Consensus 126 ~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 126 EEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHHHHHHHHHHhC-cCcEEEEE
Confidence 2345788888899 99999875
No 242
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.28 E-value=3e-06 Score=63.77 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=53.2
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
+|.-|..++.. +.+|+++|+++.+++.++++++..+..++++++.+|+.+. + ..+||.|+.+.+..
T Consensus 39 ~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~-~--------~~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 39 TGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-D--------LPFFDTCVANLPYQ 104 (285)
T ss_dssp TSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-C--------CCCCSEEEEECCGG
T ss_pred ccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc-c--------chhhcEEEEecCcc
Confidence 36667777765 5699999999999999999998777656899999999864 1 34799999987543
No 243
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.26 E-value=4.9e-07 Score=64.83 Aligned_cols=84 Identities=11% Similarity=0.041 Sum_probs=61.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC---cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~---~~ 78 (157)
|..+..++.. +.+++++|+++.+++.++++. .+++.+|+.+....+ ++++||+|++.... ..
T Consensus 44 G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----~~~~fD~v~~~~~l~~~~~ 108 (230)
T 3cc8_A 44 GALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----EEEQFDCVIFGDVLEHLFD 108 (230)
T ss_dssp SHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----CTTCEEEEEEESCGGGSSC
T ss_pred CHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----CCCccCEEEECChhhhcCC
Confidence 4444445544 489999999999999988754 267888887531111 24689999986532 34
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.+.|+|||.+++..
T Consensus 109 ~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 109 PWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp HHHHHHHTGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 5678899999999999999864
No 244
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.25 E-value=6.7e-07 Score=67.16 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=58.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHH--------------H---------cC-------CCCcEEEEEccHHHHHHHHhhcCCC
Q 031568 14 ILQITAIDVNRETYEIGLPIIK--------------K---------AG-------VDHKINFIESEALSVLDQLLKYSEN 63 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~--------------~---------~~-------~~~~i~~~~~d~~~~l~~~~~~~~~ 63 (157)
+.+|+++|+|+++++.|++++- + .| +.++|+|.++|+.+. + +. .
T Consensus 137 ~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~-~-~~----~ 210 (274)
T 1af7_A 137 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK-Q-YN----V 210 (274)
T ss_dssp SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS-S-CC----C
T ss_pred CeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCC-C-CC----c
Confidence 4699999999999999998751 0 00 013699999998762 1 10 1
Q ss_pred CCceeEEEEcCCC-----cccHHHHHHHHhcccCCeEEEEec
Q 031568 64 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 64 ~~~fD~I~iD~~~-----~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.++||+|++-... +....+++.+.+.|+|||++++..
T Consensus 211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3579999985421 123567888899999999999843
No 245
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.23 E-value=4.1e-06 Score=59.11 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred cccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-----------------------HH
Q 031568 2 HLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-----------------------DQ 56 (157)
Q Consensus 2 g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-----------------------~~ 56 (157)
|.-|..++...+ +++|+++|+++.. .. ++++++++|+.+.. ..
T Consensus 34 G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 101 (201)
T 2plw_A 34 GSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEI 101 (201)
T ss_dssp CHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-----------CHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccccchhhHHHHHhh
Confidence 556667777776 7999999999842 12 46899999986531 01
Q ss_pred HhhcCCCCCceeEEEEcCCCcc-------c-------HHHHHHHHhcccCCeEEEEec
Q 031568 57 LLKYSENEGSFDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 57 ~~~~~~~~~~fD~I~iD~~~~~-------~-------~~~~~~~~~~L~~gG~iv~~~ 100 (157)
+ +.++||+|+++..... . ...++.+.++|+|||.+++..
T Consensus 102 ~-----~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 102 L-----QDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp H-----TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----CCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 2 1468999999864321 1 125777889999999999853
No 246
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=98.23 E-value=5.5e-07 Score=69.44 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=65.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|. +.++. +++++..+..++++++.+|+.+. + + +||+|++.....
T Consensus 196 G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~------p-~~D~v~~~~vlh~~~d 262 (348)
T 3lst_A 196 GGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V------P-HADVHVLKRILHNWGD 262 (348)
T ss_dssp SHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C------C-CCSEEEEESCGGGSCH
T ss_pred CHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C------C-CCcEEEEehhccCCCH
Confidence 556667888889999999999 55554 44454556667899999999731 1 3 899999864321
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 263 ~~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 263 EDSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 12578999999999999998865543
No 247
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.20 E-value=2e-06 Score=63.48 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=60.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC----Cc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----KD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~----~~ 77 (157)
|..+..++.. +.+++++|+++.+++.|+++.. .+ ++.+|+.+. + + +.++||+|++... ..
T Consensus 66 G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~-----~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 66 GKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-F-----PSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-S-----CTTCEEEEEECSSHHHHCS
T ss_pred CHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-C-----CCCCEEEEEEcchhhhccc
Confidence 3344444443 6799999999999999998753 12 788888753 2 1 2568999998642 13
Q ss_pred ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.....++.+.+.|+|||.+++..
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHcCCCeEEEEEe
Confidence 46778999999999999999853
No 248
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.20 E-value=3.2e-06 Score=64.09 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=47.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|.-|..++.. +.+|+++|+++.+++.++++++..+. ++++++.+|+.+.. .++||+|+++.+..
T Consensus 54 G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~---------~~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 54 GNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTV---------FPKFDVCTANIPYK 117 (299)
T ss_dssp STTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSC---------CCCCSEEEEECCGG
T ss_pred cHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCC---------cccCCEEEEcCCcc
Confidence 5556666554 67999999999999999999988877 58999999997641 35799999997643
No 249
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.18 E-value=2.2e-06 Score=71.03 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=62.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC-----CCcccHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~-----~~~~~~~~~~~~~~ 88 (157)
..+|++||.+| ++..|++.++.++++++|++++||+.++- + ++++|+|+..- ..+..++.+....+
T Consensus 385 ~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L------PEKVDIIVSEwMG~fLl~E~mlevL~Ardr 455 (637)
T 4gqb_A 385 RIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A------PEKADIIVSELLGSFADNELSPECLDGAQH 455 (637)
T ss_dssp EEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C------SSCEEEEECCCCBTTBGGGCHHHHHHHHGG
T ss_pred CcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C------CcccCEEEEEcCcccccccCCHHHHHHHHH
Confidence 34789999997 67889999999999999999999999862 2 57899999753 12334577777789
Q ss_pred cccCCeEEEEe
Q 031568 89 LLKVGGIAVYD 99 (157)
Q Consensus 89 ~L~~gG~iv~~ 99 (157)
+|+|||+++-+
T Consensus 456 ~LKPgGimiPs 466 (637)
T 4gqb_A 456 FLKDDGVSIPG 466 (637)
T ss_dssp GEEEEEEEESC
T ss_pred hcCCCcEEccc
Confidence 99999999754
No 250
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.16 E-value=6.2e-06 Score=61.46 Aligned_cols=82 Identities=11% Similarity=-0.038 Sum_probs=62.3
Q ss_pred HhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-----cHHHH
Q 031568 9 MTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN-----YCNYH 83 (157)
Q Consensus 9 ~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-----~~~~~ 83 (157)
+...|.++++++|+|+.+++.+++|+..+|+. .++.+.|..... +.++||++++.-..+. -...|
T Consensus 151 ~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~DvaL~lkti~~Le~q~kg~g~ 220 (281)
T 3lcv_B 151 MGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--------LDEPADVTLLLKTLPCLETQQRGSGW 220 (281)
T ss_dssp TTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCCSEEEETTCHHHHHHHSTTHHH
T ss_pred HhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--------CCCCcchHHHHHHHHHhhhhhhHHHH
Confidence 33458999999999999999999999999975 678888887543 2678999987532111 11334
Q ss_pred HHHHhcccCCeEEEEecc
Q 031568 84 ERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 84 ~~~~~~L~~gG~iv~~~~ 101 (157)
.+.+.|+++|++|.-..
T Consensus 221 -~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 221 -EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp -HHHHHSSCSEEEEEEEC
T ss_pred -HHHHHhCCCCEEEeccc
Confidence 67789999999997544
No 251
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=98.16 E-value=2.4e-06 Score=67.18 Aligned_cols=87 Identities=11% Similarity=0.162 Sum_probs=59.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---Ccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~ 78 (157)
|..+..++.. +.+|+++|+++.+++.|+++ +......++..+..+.++.. +++||+|++... .+.
T Consensus 119 G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~fD~I~~~~vl~h~~d 186 (416)
T 4e2x_A 119 GIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPANVIYAANTLCHIPY 186 (416)
T ss_dssp TTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCEEEEEEESCGGGCTT
T ss_pred CHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCEEEEEECChHHhcCC
Confidence 4445555543 56999999999999999875 44322222323333333322 478999998753 235
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+++.+.++|+|||++++..
T Consensus 187 ~~~~l~~~~r~LkpgG~l~i~~ 208 (416)
T 4e2x_A 187 VQSVLEGVDALLAPDGVFVFED 208 (416)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEe
Confidence 6788999999999999999864
No 252
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.15 E-value=5.4e-06 Score=58.77 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=55.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-----HHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-----LDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-----l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|..|..++.. +++|+++|+++.. .. ++++++.+|+.+. +...... ...++||+|++|+..
T Consensus 37 G~~s~~la~~--~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~-~~~~~~D~Vlsd~~~ 101 (191)
T 3dou_A 37 GGWTQVLNSL--ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALRE-EGIEKVDDVVSDAMA 101 (191)
T ss_dssp CHHHHHHTTT--CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHH-HTCSSEEEEEECCCC
T ss_pred CHHHHHHHHc--CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhc-ccCCcceEEecCCCc
Confidence 5455555554 8899999999852 22 4799999997652 1111100 001489999999743
Q ss_pred cc--------------cHHHHHHHHhcccCCeEEEEec
Q 031568 77 DN--------------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 ~~--------------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.. ....++.+.++|+|||.+++.-
T Consensus 102 ~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 102 KVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 1345677789999999999853
No 253
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=98.07 E-value=3.4e-06 Score=60.53 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=55.1
Q ss_pred EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC---CcccHHHHHHHHhcccCCe
Q 031568 18 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGG 94 (157)
Q Consensus 18 ~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~---~~~~~~~~~~~~~~L~~gG 94 (157)
+++|+++.+++.++++ +++++.+|+.+. + + +.++||+|++... .+....+++.+.+.|+|||
T Consensus 69 ~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG 133 (219)
T 1vlm_A 69 IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L-----KDESFDFALMVTTICFVDDPERALKEAYRILKKGG 133 (219)
T ss_dssp EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S-----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEE
T ss_pred hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C-----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCc
Confidence 9999999999999886 578899998653 2 1 2468999998753 2345778999999999999
Q ss_pred EEEEecc
Q 031568 95 IAVYDNT 101 (157)
Q Consensus 95 ~iv~~~~ 101 (157)
.+++...
T Consensus 134 ~l~i~~~ 140 (219)
T 1vlm_A 134 YLIVGIV 140 (219)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9998643
No 254
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.07 E-value=4.8e-06 Score=62.97 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=54.2
Q ss_pred HHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEE-EEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------
Q 031568 6 KLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKD------ 77 (157)
Q Consensus 6 ~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~-~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------ 77 (157)
.+++...+ +++|+++|+++. + +++++ +++|+.+.. + .++||+|++|....
T Consensus 83 ~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~------~~~fD~Vvsn~~~~~~g~~~ 140 (290)
T 2xyq_A 83 AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T------ANKWDLIISDMYDPRTKHVT 140 (290)
T ss_dssp HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C------SSCEEEEEECCCCCC---CC
T ss_pred HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c------cCcccEEEEcCCcccccccc
Confidence 44555555 799999999998 1 26888 999997631 1 36799999985321
Q ss_pred --------ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 --------NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 --------~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.+...++.+.+.|+|||.+++..
T Consensus 141 ~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 141 KENDSKEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12467888999999999999863
No 255
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.06 E-value=5.5e-07 Score=68.15 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=58.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHH-HHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD-QLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|.-|..++.. +.++|+++|+++.|++.+.++ ..++... ..++...-. .+ +..+||+|++|......
T Consensus 97 G~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l-----~~~~fD~v~~d~sf~sl 164 (291)
T 3hp7_A 97 GGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF-----TEGLPSFASIDVSFISL 164 (291)
T ss_dssp SHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC-----TTCCCSEEEECCSSSCG
T ss_pred cHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC-----CCCCCCEEEEEeeHhhH
Confidence 5555555544 567999999999999885432 1244333 334432211 11 13459999999876677
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~ 98 (157)
...+..+.++|+|||.+++
T Consensus 165 ~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 165 NLILPALAKILVDGGQVVA 183 (291)
T ss_dssp GGTHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHcCcCCEEEE
Confidence 8889999999999999987
No 256
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.04 E-value=3.2e-06 Score=67.42 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCC-cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc-------------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------- 78 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~-~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------------- 78 (157)
+..+++++|+++.++++|+.|+...|+.. +++++++|+.... ..++||+|+.+++...
T Consensus 207 ~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~ 278 (445)
T 2okc_A 207 RDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDF 278 (445)
T ss_dssp HHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTS
T ss_pred cCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhc
Confidence 34689999999999999999999888753 6789999987642 1348999999874211
Q ss_pred -------cHHHHHHHHhcccCCeEEEE
Q 031568 79 -------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 -------~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++.+.++|+|||.+++
T Consensus 279 ~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 279 YVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp SSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 13678899999999998865
No 257
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.03 E-value=1.7e-06 Score=60.04 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=55.3
Q ss_pred EEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCC---C-cccHHHHHHHHhcccCC
Q 031568 19 AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDAD---K-DNYCNYHERLMKLLKVG 93 (157)
Q Consensus 19 ~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~---~-~~~~~~~~~~~~~L~~g 93 (157)
++|+++.|++.|+++.. .+++++.+|+.+.... + ++++||+|++... . ......++++.+.|+||
T Consensus 25 ~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 25 PVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAH-----KESSFDIILSGLVPGSTTLHSAEILAEIARILRPG 94 (176)
T ss_dssp CHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCC-----CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred eeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccC-----CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCC
Confidence 37899999999998753 2489999999864210 0 1578999998532 2 45688999999999999
Q ss_pred eEEEEecc
Q 031568 94 GIAVYDNT 101 (157)
Q Consensus 94 G~iv~~~~ 101 (157)
|.+++.+.
T Consensus 95 G~l~~~~~ 102 (176)
T 2ld4_A 95 GCLFLKEP 102 (176)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcc
Confidence 99998644
No 258
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.02 E-value=1.3e-05 Score=56.14 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=56.9
Q ss_pred cccHHHHHhhCCC---------cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHH-----HHhhcCCCCCc
Q 031568 2 HLPTKLFMTGNKI---------LQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD-----QLLKYSENEGS 66 (157)
Q Consensus 2 g~st~~l~~~~~~---------~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~-----~~~~~~~~~~~ 66 (157)
|..+..++...+. ++|+++|+++.. .. ++++++ .+|+.+... ... +.++
T Consensus 34 G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~~~~~----~~~~ 97 (196)
T 2nyu_A 34 GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRILEVL----PGRR 97 (196)
T ss_dssp CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHHHHHS----GGGC
T ss_pred CHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHHHHhc----CCCC
Confidence 5566677776554 899999999842 22 368889 898754321 111 1357
Q ss_pred eeEEEEcCCCcc-------c-------HHHHHHHHhcccCCeEEEEec
Q 031568 67 FDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 67 fD~I~iD~~~~~-------~-------~~~~~~~~~~L~~gG~iv~~~ 100 (157)
||+|+++..... . ...++.+.++|+|||.+++..
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 999999763211 1 367888899999999999864
No 259
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.97 E-value=8.2e-06 Score=68.64 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHER 85 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~ 85 (157)
+..+|+++|+++.+++.|++|++.+|+.+.+++.++|+.+..+.. ..++||+|+++++.. ....+++.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~ 329 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHSL 329 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence 347899999999999999999999999888999999998742211 123799999998632 22333433
Q ss_pred ---HHhcccCCeEEEE
Q 031568 86 ---LMKLLKVGGIAVY 98 (157)
Q Consensus 86 ---~~~~L~~gG~iv~ 98 (157)
.++.+.|||.+.+
T Consensus 330 l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 330 LGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHCTTCEEEE
T ss_pred HHHHHHhhCCCCeEEE
Confidence 3344557877654
No 260
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=97.96 E-value=3.7e-06 Score=65.41 Aligned_cols=84 Identities=6% Similarity=0.062 Sum_probs=63.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++..+|+.+++++|+ |++++.|+++ ++++++.+|+.+. + ... |+|++.....
T Consensus 215 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-D~v~~~~vlh~~~~ 276 (368)
T 3reo_A 215 GAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-DAIFIKWICHDWSD 276 (368)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-SEEEEESCGGGBCH
T ss_pred CHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-CEEEEechhhcCCH
Confidence 556667888889999999999 8888776542 5899999999762 1 223 9999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 277 EHCLKLLKNCYAALPDHGKVIVAEYIL 303 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 23467899999999999988765543
No 261
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=97.94 E-value=1.2e-06 Score=64.07 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=53.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHH-HHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVL-DQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|..|..++.. +..+|+++|+++.+++.|+++.. ++.... .++.... ..+ ....||.+.+|......
T Consensus 49 G~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~D~v~~~l 116 (232)
T 3opn_A 49 GGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF-----EQGRPSFTSIDVSFISL 116 (232)
T ss_dssp SHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC-----CSCCCSEEEECCSSSCG
T ss_pred CHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc-----CcCCCCEEEEEEEhhhH
Confidence 5555556654 44699999999999998877532 222221 1221110 011 11236777777655556
Q ss_pred HHHHHHHHhcccCCeEEEE
Q 031568 80 CNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~ 98 (157)
..++..+.+.|+|||.+++
T Consensus 117 ~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 117 DLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp GGTHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHhccCCCEEEE
Confidence 7789999999999999987
No 262
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=97.93 E-value=7e-06 Score=63.74 Aligned_cols=84 Identities=6% Similarity=0.034 Sum_probs=63.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|..+..++.++|+.+++++|+ |++++.|++ .++++++.+|+.+ + + ... |+|++.....
T Consensus 213 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~-~------p~~-D~v~~~~vlh~~~d 274 (364)
T 3p9c_A 213 GATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFK--E-V------PSG-DTILMKWILHDWSD 274 (364)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT--C-C------CCC-SEEEEESCGGGSCH
T ss_pred CHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCC--C-C------CCC-CEEEehHHhccCCH
Confidence 556677888889999999999 888877654 2589999999986 2 1 223 9999865322
Q ss_pred -ccHHHHHHHHhcccCCeEEEEecccC
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~~~~ 103 (157)
....+++.+.+.|+|||.+++.+...
T Consensus 275 ~~~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 275 QHCATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 23467899999999999988765543
No 263
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.90 E-value=0.00015 Score=53.37 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=64.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc----
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---- 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---- 77 (157)
|+..+.++.. ++.+++++|+|+.+++.+++++..+|. +.++.++|.....+ .++||+|++--..+
T Consensus 115 G~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~--------~~~~DvvLllk~lh~LE~ 183 (253)
T 3frh_A 115 GLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP--------AEAGDLALIFKLLPLLER 183 (253)
T ss_dssp TTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC--------CCBCSEEEEESCHHHHHH
T ss_pred CccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC--------CCCcchHHHHHHHHHhhh
Confidence 5555555545 899999999999999999999999884 68889999876432 56899998752111
Q ss_pred -ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 -NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 -~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
.-...+ .+.+.|++++++|.-.
T Consensus 184 q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 184 EQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hchhhHH-HHHHHhcCCCEEEEcC
Confidence 111233 6667999999998754
No 264
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.89 E-value=5.6e-06 Score=65.00 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=53.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---------------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------- 77 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------------- 77 (157)
+..+++++|+++.+++.| .+++++++|+.+.. ..++||+|+.+++..
T Consensus 63 ~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~--------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~ 124 (421)
T 2ih2_A 63 TAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKA 124 (421)
T ss_dssp SCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHH
T ss_pred CCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC--------ccCCCCEEEECcCccCcccccccccccCHH
Confidence 678999999999999877 47999999998752 146899999986321
Q ss_pred -----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 78 -----------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 78 -----------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+++.+.++|+|||.+++-
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i 163 (421)
T 2ih2_A 125 VKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 163 (421)
T ss_dssp HHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 0124577888999999998773
No 265
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=97.86 E-value=9e-06 Score=63.14 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=63.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~ 78 (157)
|..+..++...|+.+++++|+ +.+++.|++ . ++++++.+|+.+ + + .. ||+|++..... .
T Consensus 221 G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~------~~-~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 221 GRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA--S-V------PQ-GDAMILKAVCHNWSD 282 (372)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT--C-C------CC-EEEEEEESSGGGSCH
T ss_pred cHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc--C-C------CC-CCEEEEecccccCCH
Confidence 556667777889999999999 999887765 1 469999999976 2 1 23 99999865322 2
Q ss_pred --cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 --YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 --~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
...+++.+.+.|+|||.+++.+..
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 237889999999999999876543
No 266
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=97.83 E-value=1.2e-05 Score=61.87 Aligned_cols=83 Identities=7% Similarity=0.062 Sum_probs=62.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~ 78 (157)
|..+..++..+|+.+++++|+ |.+++.|++ . ++++++.+|+.+. + . .||+|++..... .
T Consensus 200 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~------p-~~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 200 GTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTS---I------P-NADAVLLKYILHNWTD 261 (352)
T ss_dssp SHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTC---C------C-CCSEEEEESCGGGSCH
T ss_pred cHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCC---C------C-CccEEEeehhhccCCH
Confidence 555666777889999999999 999988765 1 3599999999752 1 2 499999865321 2
Q ss_pred --cHHHHHHHHhcccC---CeEEEEeccc
Q 031568 79 --YCNYHERLMKLLKV---GGIAVYDNTL 102 (157)
Q Consensus 79 --~~~~~~~~~~~L~~---gG~iv~~~~~ 102 (157)
...+++.+.+.|+| ||.+++.+..
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 23788999999999 9988775544
No 267
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.83 E-value=4.2e-05 Score=62.49 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=61.6
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc------------
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------------ 78 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~------------ 78 (157)
.+++++|+++.++++|+.|+...|+.. +++++++|+...... ..++||+|+.+++...
T Consensus 212 ~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~ 285 (541)
T 2ar0_A 212 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVH 285 (541)
T ss_dssp TSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccccchhhHhhcCC
Confidence 479999999999999999998888763 278999998765322 1467999999975221
Q ss_pred -----cHHHHHHHHhcccCCeEEEE
Q 031568 79 -----YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 -----~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++.+.++|+|||.+++
T Consensus 286 ~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 286 PTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp CCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEE
Confidence 23678889999999998765
No 268
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=97.80 E-value=3.3e-05 Score=64.63 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=60.5
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC-----CcccHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~-----~~~~~~~~~~~~~ 88 (157)
..+|++||.++.++..++.... +|+.++|+++.+|+.++-.-... ...++.|+|+..-- .+..++.++.+.+
T Consensus 446 ~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r 522 (745)
T 3ua3_A 446 KVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAKD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTG 522 (745)
T ss_dssp EEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHHH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGG
T ss_pred ccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccccc--CCCCcccEEEEeccccccchhccHHHHHHHHH
Confidence 4599999999988766666554 78888999999999987321100 01468999997532 1234577777789
Q ss_pred cccCCeEEEEe
Q 031568 89 LLKVGGIAVYD 99 (157)
Q Consensus 89 ~L~~gG~iv~~ 99 (157)
.|+|||+++-+
T Consensus 523 ~Lkp~Gi~iP~ 533 (745)
T 3ua3_A 523 FLKPTTISIPQ 533 (745)
T ss_dssp GSCTTCEEESC
T ss_pred hCCCCcEEECC
Confidence 99999998754
No 269
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.77 E-value=8.2e-05 Score=56.32 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=50.2
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
+|.-|..++.. +.+|+++|+|+.+++.++++++. . ++++++++|+.+.- +. ..+||.|+.+.+.
T Consensus 61 ~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l~~~--~~-----~~~fD~Iv~NlPy 124 (295)
T 3gru_A 61 KGILTEELAKN--AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDALKVD--LN-----KLDFNKVVANLPY 124 (295)
T ss_dssp TSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTTTSC--GG-----GSCCSEEEEECCG
T ss_pred chHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchhhCC--cc-----cCCccEEEEeCcc
Confidence 36667777765 68999999999999999999873 2 48999999998741 11 3469999988654
No 270
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.75 E-value=8.6e-05 Score=60.93 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|+-+..||. -+++|++||.++.+++.|+.++.+.|.. ++++.++++.+..... ..++||+|++-.
T Consensus 78 G~~~~~la~--~ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~fD~v~~~e 142 (569)
T 4azs_A 78 GFFSLSLAS--KGATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGEFDLAIGLS 142 (569)
T ss_dssp SHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTSCSEEEEES
T ss_pred cHHHHHHHh--CCCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCCccEEEECc
Confidence 444445554 3889999999999999999999888754 6999999999876543 256899999754
No 271
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=97.55 E-value=7.4e-05 Score=57.60 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=62.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~ 78 (157)
|..+..++..+|+.+++++|+ +.+++.|++ . ++++++.+|+.+ + + . +||+|++..... .
T Consensus 205 G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~------~-~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 205 GGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-I------P-SADAVLLKWVLHDWND 266 (358)
T ss_dssp SHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-C------C-CCSEEEEESCGGGSCH
T ss_pred CHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-C------C-CceEEEEcccccCCCH
Confidence 555667777889999999999 788877664 2 369999999976 2 1 2 599999865321 2
Q ss_pred --cHHHHHHHHhcccC---CeEEEEeccc
Q 031568 79 --YCNYHERLMKLLKV---GGIAVYDNTL 102 (157)
Q Consensus 79 --~~~~~~~~~~~L~~---gG~iv~~~~~ 102 (157)
...+++.+.+.|+| ||.+++.+..
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 23788999999999 9988775443
No 272
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.51 E-value=8.9e-06 Score=61.02 Aligned_cols=85 Identities=5% Similarity=-0.087 Sum_probs=54.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-HHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADK-- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-- 76 (157)
|..|..++.. ++|++||+++ ++..+++.. .......+++++ .+|+.+. ++++||+|++|...
T Consensus 94 G~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~fD~Vvsd~~~~~ 160 (276)
T 2wa2_A 94 GSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM---------EPFQADTVLCDIGESN 160 (276)
T ss_dssp CHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CCCCCSEEEECCCCCC
T ss_pred CHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC---------CCCCcCEEEECCCcCC
Confidence 4445555544 7999999998 533332210 001111268899 9998762 25689999998641
Q ss_pred cc-----c--HHHHHHHHhcccCCe--EEEEe
Q 031568 77 DN-----Y--CNYHERLMKLLKVGG--IAVYD 99 (157)
Q Consensus 77 ~~-----~--~~~~~~~~~~L~~gG--~iv~~ 99 (157)
.. . ...++.+.++|+||| .++++
T Consensus 161 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 161 PTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 01 0 135777889999999 88884
No 273
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.50 E-value=0.00026 Score=52.43 Aligned_cols=65 Identities=9% Similarity=0.174 Sum_probs=48.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
+|.-|..++.. +.+|+++|+|+.+++.++++++. .++++++++|+.++ ++.+. .+++|| |+.+.+
T Consensus 40 ~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP 105 (255)
T 3tqs_A 40 RGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVK----TDKPLR-VVGNLP 105 (255)
T ss_dssp TTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred ccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence 36667667664 48999999999999999999865 35899999999876 22221 134688 776654
No 274
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=97.48 E-value=5.2e-05 Score=63.44 Aligned_cols=83 Identities=11% Similarity=0.057 Sum_probs=57.7
Q ss_pred cEEEEEeCChhHHHHHHHHH--------------HHc-----C-----CCC---cEEEEEccHHHHHHHHhhcCCCCCce
Q 031568 15 LQITAIDVNRETYEIGLPII--------------KKA-----G-----VDH---KINFIESEALSVLDQLLKYSENEGSF 67 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~--------------~~~-----~-----~~~---~i~~~~~d~~~~l~~~~~~~~~~~~f 67 (157)
.+++++|..|-..+.+++.+ +.. | +++ +++++.||+.+.++++... ....+
T Consensus 95 l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~ 172 (689)
T 3pvc_A 95 LHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQV 172 (689)
T ss_dssp EEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCE
T ss_pred EEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCce
Confidence 67999999775555554422 221 1 111 5789999999999875210 13679
Q ss_pred eEEEEcCCCcc------cHHHHHHHHhcccCCeEEEEe
Q 031568 68 DYAFVDADKDN------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 68 D~I~iD~~~~~------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
|.+|+|+..+. ..++|..+.+++++||.+..-
T Consensus 173 da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 210 (689)
T 3pvc_A 173 DAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF 210 (689)
T ss_dssp EEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred eEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 99999985443 378899999999999998764
No 275
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.47 E-value=0.00032 Score=52.67 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=48.2
Q ss_pred HHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 5 TKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 5 t~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|..++.. +++|+++|.||.+++.|++ ++. +++++++++..++-..+.+. ..+++|.|++|.+.+.
T Consensus 37 S~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 37 ARGILER--GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVERVDGILADLGVSS 101 (285)
T ss_dssp HHHHHHT--TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCSCEEEEEEECSCCH
T ss_pred HHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCCCcCEEEeCCcccc
Confidence 4445554 7899999999999999998 643 58999999998764333210 1257999999976543
No 276
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.44 E-value=7.3e-05 Score=61.12 Aligned_cols=79 Identities=9% Similarity=0.114 Sum_probs=61.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc---------------
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------- 78 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--------------- 78 (157)
..+++++|+++.++.+|+.|+...|+..++.+.++|....-. . ...+||+|+.+++...
T Consensus 283 ~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~ 356 (544)
T 3khk_A 283 QISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-H-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWT 356 (544)
T ss_dssp GEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-C-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGE
T ss_pred hceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-c-----ccccccEEEECCCcCCccccchhhhhhhhhh
Confidence 568999999999999999999999987666668999765311 1 1468999999875221
Q ss_pred -----------------cHHHHHHHHhcccCCeEEEE
Q 031568 79 -----------------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 -----------------~~~~~~~~~~~L~~gG~iv~ 98 (157)
...+++.+.++|+|||.+++
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 357 INTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp ECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred cCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence 02478888999999998654
No 277
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.43 E-value=2.6e-05 Score=59.27 Aligned_cols=83 Identities=7% Similarity=-0.074 Sum_probs=53.6
Q ss_pred cccHHHHHhhCCCcEEEEEeC----ChhHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHhhcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~----~~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
|..|..++.. ++|++||+ ++.+++.++ .+..+. ++++++.+ |+.+. +.++||+|++|...
T Consensus 94 G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l---------~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 94 GGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI---------PPERCDTLLCDIGE 158 (305)
T ss_dssp SHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS---------CCCCCSEEEECCCC
T ss_pred CHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC---------CcCCCCEEEECCcc
Confidence 5556556554 68999999 554332111 111121 47999999 88753 14689999998753
Q ss_pred c--cc-------HHHHHHHHhcccCCeEEEEe
Q 031568 77 D--NY-------CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 77 ~--~~-------~~~~~~~~~~L~~gG~iv~~ 99 (157)
. .. ...+..+.++|+|||.++++
T Consensus 159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 10 13567777999999999985
No 278
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.38 E-value=0.0005 Score=56.16 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCC-CcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCCc-------------
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKD------------- 77 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~------------- 77 (157)
+..+++++|+++.++.+|+.|+...|+. +++.+.++|....- +.. ...+||+|+.+|+..
T Consensus 247 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~ 321 (542)
T 3lkd_A 247 QTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDP 321 (542)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGST
T ss_pred cCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhh
Confidence 4679999999999999999999998885 47899999987531 111 146799999987421
Q ss_pred c---c----------HHHHHHHHhccc-CCeEEEE
Q 031568 78 N---Y----------CNYHERLMKLLK-VGGIAVY 98 (157)
Q Consensus 78 ~---~----------~~~~~~~~~~L~-~gG~iv~ 98 (157)
. + ..+++.+.++|+ +||.+++
T Consensus 322 rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 322 RFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp TTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred hhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 0 1 236888899999 9998754
No 279
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=97.37 E-value=0.00021 Score=52.81 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..++++||+.+.++.+. .++||+||+|++-. ....+++.+.++|+|+|.+++.
T Consensus 4 ~~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 4 INKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34689999999998763 57899999999631 1234567778899999999875
No 280
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.37 E-value=1e-05 Score=60.33 Aligned_cols=86 Identities=9% Similarity=-0.072 Sum_probs=54.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH-HHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCC--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADK-- 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~-~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~-- 76 (157)
|..|..++.. ++|++||+++ ++..+++.. .......++.++ .+|+.+. ++++||+|++|...
T Consensus 86 G~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~~~fD~V~sd~~~~~ 152 (265)
T 2oxt_A 86 GGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL---------PVERTDVIMCDVGESS 152 (265)
T ss_dssp SHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CCCCCSEEEECCCCCC
T ss_pred CHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---------CCCCCcEEEEeCcccC
Confidence 4445555544 7999999998 433222110 000111268889 8999763 24689999998641
Q ss_pred ccc-------HHHHHHHHhcccCCe--EEEEec
Q 031568 77 DNY-------CNYHERLMKLLKVGG--IAVYDN 100 (157)
Q Consensus 77 ~~~-------~~~~~~~~~~L~~gG--~iv~~~ 100 (157)
... ...++.+.++|+||| .+++..
T Consensus 153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 153 PKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 011 126777889999999 888853
No 281
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=97.29 E-value=0.00032 Score=53.61 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-----------------ccHHHHHHHHhcccCCeEEEEe
Q 031568 41 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 41 ~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-----------------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
++.++++||+.+.++.+. .++||+||+|++-. .+.+.++.+.++|+|||.+++.
T Consensus 13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 468899999999887652 57899999998631 1345677788999999999874
No 282
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.28 E-value=9.7e-05 Score=52.50 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=49.2
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC--CcccHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~--~~~~~~~~~~~~~~L~~ 92 (157)
.+++++|+++. +++++.+|+.+. + + +.++||+|++... ......+++.+.++|+|
T Consensus 87 ~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~ 143 (215)
T 2zfu_A 87 NPVHCFDLASL----------------DPRVTVCDMAQV-P-L-----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKP 143 (215)
T ss_dssp SCEEEEESSCS----------------STTEEESCTTSC-S-C-----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEE
T ss_pred ccEEEEeCCCC----------------CceEEEeccccC-C-C-----CCCCEeEEEEehhccccCHHHHHHHHHHhCCC
Confidence 68999999988 456788888762 2 1 2568999998653 24567889999999999
Q ss_pred CeEEEEecc
Q 031568 93 GGIAVYDNT 101 (157)
Q Consensus 93 gG~iv~~~~ 101 (157)
||.+++.+.
T Consensus 144 gG~l~i~~~ 152 (215)
T 2zfu_A 144 GGLLKVAEV 152 (215)
T ss_dssp EEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 999998643
No 283
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=97.21 E-value=0.00061 Score=52.05 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=41.4
Q ss_pred cEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCc----------cc----HHHHHHHHhcccCCeEEEEe
Q 031568 42 KINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD----------NY----CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 42 ~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~----------~~----~~~~~~~~~~L~~gG~iv~~ 99 (157)
..+++ +||+.+.++.+. .++||+||+|++-. .| ...+..+.++|+|||.+++.
T Consensus 38 ~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp EEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 46788 999999998763 56899999999632 12 34566778899999999885
No 284
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=97.16 E-value=0.0023 Score=48.59 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=41.4
Q ss_pred EEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEE
Q 031568 43 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 43 i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
++++.||+.+.++++. ..+||+||.|+-.+ ...++|+.+.++++|||+++.
T Consensus 168 L~l~~GDa~~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EEEEESCHHHHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEechHHHHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 5688999999998762 35799999998322 236889999999999999985
No 285
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=97.11 E-value=0.00065 Score=51.15 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=40.3
Q ss_pred CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---c--------------------cHHHHHHHHhcccCCeEEE
Q 031568 41 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV 97 (157)
Q Consensus 41 ~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~--------------------~~~~~~~~~~~L~~gG~iv 97 (157)
.++++++||+.+.++.+ ++++||+|++|++-. . +..+++.+.++|+|||.++
T Consensus 20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~ 94 (297)
T 2zig_A 20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV 94 (297)
T ss_dssp -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 36899999999988755 257899999998531 1 1235567789999999987
Q ss_pred Ee
Q 031568 98 YD 99 (157)
Q Consensus 98 ~~ 99 (157)
+.
T Consensus 95 i~ 96 (297)
T 2zig_A 95 IV 96 (297)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 286
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.11 E-value=0.001 Score=49.70 Aligned_cols=85 Identities=11% Similarity=-0.016 Sum_probs=55.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|.-|..++.. +.+|+++|+|+.+++.+++++.. ++++++++|+.++-.. ....+|.|+.+.+......
T Consensus 58 G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~------~~~~~~~iv~NlPy~iss~ 125 (271)
T 3fut_A 58 GALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWE------EVPQGSLLVANLPYHIATP 125 (271)
T ss_dssp SHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGG------GSCTTEEEEEEECSSCCHH
T ss_pred HHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChh------hccCccEEEecCcccccHH
Confidence 5556566654 47999999999999999998752 4899999999875211 0136899998875433333
Q ss_pred HHHHHHhc-ccCCeEEEE
Q 031568 82 YHERLMKL-LKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~-L~~gG~iv~ 98 (157)
++..++.. .-+.+++++
T Consensus 126 il~~ll~~~~~~~~~lm~ 143 (271)
T 3fut_A 126 LVTRLLKTGRFARLVFLV 143 (271)
T ss_dssp HHHHHHHHCCEEEEEEEE
T ss_pred HHHHHhcCCCCCEEEEEe
Confidence 44333322 113445544
No 287
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=97.10 E-value=0.0013 Score=48.01 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=38.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 53 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 53 (157)
|.-|..++.. +.+|+++|+++.+++.++++++.. ++++++++|+.+.
T Consensus 42 G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~ 88 (244)
T 1qam_A 42 GHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF 88 (244)
T ss_dssp SHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred hHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence 5556666665 489999999999999999988642 4899999999874
No 288
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=96.91 E-value=0.0016 Score=55.56 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=54.0
Q ss_pred CcEEEEEeCChhHHHHH--HHHHHHcCCC---CcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----------
Q 031568 14 ILQITAIDVNRETYEIG--LPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------- 78 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a--~~~~~~~~~~---~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~---------- 78 (157)
..+++++|+++.+++.| +.|+..+++. +...+..+|..+.-.. ..++||+|+.+++...
T Consensus 348 ~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd 421 (878)
T 3s1s_A 348 PRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRK 421 (878)
T ss_dssp GGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhh
Confidence 46899999999999999 7776553322 1245666776652111 1457999999985310
Q ss_pred ----------------------cHHHHHHHHhcccCCeEEEE
Q 031568 79 ----------------------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 79 ----------------------~~~~~~~~~~~L~~gG~iv~ 98 (157)
+..+++.+.++|++||.+++
T Consensus 422 ~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf 463 (878)
T 3s1s_A 422 FAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA 463 (878)
T ss_dssp HHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence 22356778899999999876
No 289
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.91 E-value=0.0016 Score=50.02 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHHHHhh-CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 5 TKLFMTG-NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 5 t~~l~~~-~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|..++.. .|+++|+++|.||++++.|+ .+ ..+|+++++++..++...+.+. +-.+++|.|++|-+.+
T Consensus 72 S~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~-g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 72 SRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAER-DLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHT-TCTTCEEEEEEECSCC
T ss_pred HHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhc-CCCCcccEEEECCccC
Confidence 4555555 47899999999999999984 33 2368999999988875544320 0113699999986543
No 290
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=96.85 E-value=6e-05 Score=55.18 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=58.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY-- 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~-- 79 (157)
|.-|..++.. +.+|+++|+++.+++.|+++++ ..++++++++|+.+.- +. ..++| .|+.+++....
T Consensus 41 G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~--~~----~~~~f-~vv~n~Py~~~~~ 108 (245)
T 1yub_A 41 GHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ--FP----NKQRY-KIVGNIPYHLSTQ 108 (245)
T ss_dssp SSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT--CC----CSSEE-EEEEECCSSSCHH
T ss_pred CHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcC--cc----cCCCc-EEEEeCCccccHH
Confidence 5566667665 4899999999999999998875 2358999999998752 10 12578 67777542211
Q ss_pred --H----------HHH----HHHHhcccCCeEEEE
Q 031568 80 --C----------NYH----ERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 --~----------~~~----~~~~~~L~~gG~iv~ 98 (157)
. .++ +.+.++|+|||.+.+
T Consensus 109 ~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 109 IIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp HHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred HHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 1 122 557789999998754
No 291
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=96.56 E-value=0.0066 Score=45.40 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=38.6
Q ss_pred CcccHHHHHhhCC--CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568 1 MHLPTKLFMTGNK--ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 53 (157)
Q Consensus 1 ~g~st~~l~~~~~--~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 53 (157)
+|.-|..|+...+ +++|+++|+|+.+++.++++. .++++++++|+.+.
T Consensus 53 ~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 53 LGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF 102 (279)
T ss_dssp TSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred cHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence 4666777777533 366999999999999999983 35899999999875
No 292
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=96.51 E-value=0.0078 Score=45.78 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=57.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
+|+.++.+++.. +.+|++++.+++..+.+++ .|.+.-+.....+..+.+... .+.+|.||.... ..
T Consensus 178 vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~g~~d~vid~~g---~~ 243 (340)
T 3s2e_A 178 LGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------IGGAHGVLVTAV---SP 243 (340)
T ss_dssp THHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------HSSEEEEEESSC---CH
T ss_pred HHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------CCCCCEEEEeCC---CH
Confidence 355666677665 6799999999999887754 565322222223454444432 247999986643 35
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++.+.+.|+++|.++.-.
T Consensus 244 ~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 244 KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp HHHHHHHHHEEEEEEEEECS
T ss_pred HHHHHHHHHhccCCEEEEeC
Confidence 67888999999999998743
No 293
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=96.47 E-value=0.022 Score=43.30 Aligned_cols=87 Identities=17% Similarity=0.102 Sum_probs=60.6
Q ss_pred ccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 3 LPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 3 ~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
..++.+++...+.+|++++.+++..+.+++ .|.+.-+.....|..+.+.++. ....+|.++.+.. ....
T Consensus 177 ~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g~g~d~~~~~~~---~~~~ 245 (348)
T 4eez_A 177 NLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GGLGVQSAIVCAV---ARIA 245 (348)
T ss_dssp HHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TSSCEEEEEECCS---CHHH
T ss_pred HHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CCCCceEEEEecc---Ccch
Confidence 344556666678999999999998776654 5554345555567766666553 2346888887764 3556
Q ss_pred HHHHHhcccCCeEEEEec
Q 031568 83 HERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 83 ~~~~~~~L~~gG~iv~~~ 100 (157)
+..+.+.|+++|.++.-.
T Consensus 246 ~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 246 FEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp HHHHHHTEEEEEEEEECC
T ss_pred hheeheeecCCceEEEEe
Confidence 888899999999998743
No 294
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.42 E-value=0.0062 Score=44.71 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCCcccHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKDNYCNY 82 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~~~~~~~ 82 (157)
-|..++.. +..+|+++|+|+.+++.++++ + ..+++++++|+.+. ++.. .+.| .|+.+.+......+
T Consensus 45 lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~~------~~~~-~vv~NlPy~i~~~i 111 (249)
T 3ftd_A 45 LTKVLLQH-PLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCSL------GKEL-KVVGNLPYNVASLI 111 (249)
T ss_dssp HHHHHTTS-CCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGGS------CSSE-EEEEECCTTTHHHH
T ss_pred HHHHHHHc-CCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhHc------cCCc-EEEEECchhccHHH
Confidence 34444443 468999999999999999987 2 24899999999875 2211 1234 67777664433444
Q ss_pred HHHHHhc--ccCCeEEEE
Q 031568 83 HERLMKL--LKVGGIAVY 98 (157)
Q Consensus 83 ~~~~~~~--L~~gG~iv~ 98 (157)
+..+++. .-+.+++++
T Consensus 112 l~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 112 IENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp HHHHHHTGGGCSEEEEEE
T ss_pred HHHHHhcCCCCceEEEEE
Confidence 4444432 234555555
No 295
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=96.40 E-value=0.0087 Score=46.11 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=55.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.....+|+++|.+++..+.+++ .|.+.-+.....+..+.+.++. .+.+|+||-... ...
T Consensus 203 G~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~-----~gg~D~vid~~g---~~~ 270 (371)
T 1f8f_A 203 GLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT-----DGGVNFALESTG---SPE 270 (371)
T ss_dssp HHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TSCEEEEEECSC---CHH
T ss_pred HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc-----CCCCcEEEECCC---CHH
Confidence 4455556665433489999999999888765 3543112222234444444442 337999985443 345
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 271 ~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 271 ILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 6888899999999998743
No 296
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=96.38 E-value=0.0094 Score=45.93 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=55.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+...+.+|++++.+++..+.+++ .|.+ .+--...+..+.+.++ ..+.+|+||-... ...
T Consensus 185 G~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad-~vi~~~~~~~~~v~~~-----~~~g~Dvvid~~g---~~~ 251 (363)
T 4dvj_A 185 GSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH-HVIDHSKPLAAEVAAL-----GLGAPAFVFSTTH---TDK 251 (363)
T ss_dssp HHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS-EEECTTSCHHHHHHTT-----CSCCEEEEEECSC---HHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCCHHHHHHHh-----cCCCceEEEECCC---chh
Confidence 5555566665468899999999998887754 5643 2211122344444332 1357998875432 345
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 252 ~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 252 HAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHHHHHSCTTCEEEEC
T ss_pred hHHHHHHHhcCCCEEEEE
Confidence 778889999999999863
No 297
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=96.31 E-value=0.0056 Score=47.35 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=57.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.....|..+.+...... ..+.+|+||-... ...
T Consensus 195 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~--~~gg~Dvvid~~G---~~~ 265 (370)
T 4ej6_A 195 GLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGL--VPGGVDVVIECAG---VAE 265 (370)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSS--STTCEEEEEECSC---CHH
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhc--cCCCCCEEEECCC---CHH
Confidence 5556667766544499999999999887765 455422222234555544431000 1247999985432 355
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|++||.++.-.
T Consensus 266 ~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 266 TVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp HHHHHHHHEEEEEEEEECS
T ss_pred HHHHHHHHhccCCEEEEEe
Confidence 7888899999999998743
No 298
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=96.28 E-value=0.0091 Score=41.71 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=51.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|..++.+++. .+.+|++++.+++..+.+++ .|....+.....+..+.+.+.. ....+|.++.... ..
T Consensus 52 G~~~~~~~~~-~G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~----~~~~~D~vi~~~g----~~ 118 (198)
T 1pqw_A 52 GMAAVSIAKM-IGARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----DGYGVDVVLNSLA----GE 118 (198)
T ss_dssp HHHHHHHHHH-HTCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----TTCCEEEEEECCC----TH
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh----CCCCCeEEEECCc----hH
Confidence 3444445544 36799999999988766543 4543112111223333333321 1246999996553 24
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 119 ~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 119 AIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhccCCEEEEE
Confidence 678888999999999873
No 299
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=96.27 E-value=0.011 Score=44.98 Aligned_cols=88 Identities=10% Similarity=0.062 Sum_probs=58.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++...+.+|+++|.+++..+.+++ .|.+ .+--...+..+.+.++. ....+|+||-... ...
T Consensus 184 G~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~v~~~t----~g~g~d~v~d~~G---~~~ 251 (345)
T 3jv7_A 184 GHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD-AAVKSGAGAADAIRELT----GGQGATAVFDFVG---AQS 251 (345)
T ss_dssp HHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS-EEEECSTTHHHHHHHHH----GGGCEEEEEESSC---CHH
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-EEEcCCCcHHHHHHHHh----CCCCCeEEEECCC---CHH
Confidence 5556667766568899999999999887765 5654 22112234444444442 1347999985443 345
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
.++.+.+.|+++|.++.-..
T Consensus 252 ~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 252 TIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp HHHHHHHHEEEEEEEEECSC
T ss_pred HHHHHHHHHhcCCEEEEECC
Confidence 78889999999999987543
No 300
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=96.20 E-value=0.013 Score=43.07 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=45.4
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHHHhhcCCCCCceeEEEEcCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-l~~~~~~~~~~~~fD~I~iD~~~ 76 (157)
+|.-|. ++ ..+..+|+++|+|+.+++.++++++.. ++++++++|+.+. ++.... ..+..|.|+.+.+.
T Consensus 32 ~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~---~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 32 LAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAE---KMGQPLRVFGNLPY 100 (252)
T ss_dssp TTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHH---HHTSCEEEEEECCT
T ss_pred CcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhc---ccCCceEEEECCCC
Confidence 366666 43 333334999999999999999877542 4899999999874 332210 00235788877654
No 301
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=96.15 E-value=0.02 Score=43.84 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=54.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc---HHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d---~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+ . ++..+ ..+....+.+. ....+|+||-...
T Consensus 184 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~~~~i~~~--~~~g~D~vid~~g--- 251 (356)
T 1pl8_A 184 GMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD-L--VLQISKESPQEIARKVEGQ--LGCKPEVTIECTG--- 251 (356)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS-E--EEECSSCCHHHHHHHHHHH--HTSCCSEEEECSC---
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-E--EEcCcccccchHHHHHHHH--hCCCCCEEEECCC---
Confidence 5556667766543499999999998887754 4653 2 23222 22222222110 0246999985543
Q ss_pred cHHHHHHHHhcccCCeEEEEec
Q 031568 79 YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+++|.++.-.
T Consensus 252 ~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 252 AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CHHHHHHHHHHSCTTCEEEECS
T ss_pred ChHHHHHHHHHhcCCCEEEEEe
Confidence 3456788889999999998743
No 302
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=96.15 E-value=0.028 Score=42.67 Aligned_cols=89 Identities=16% Similarity=0.026 Sum_probs=60.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++......+++++.+++..+.+++ +|.+.-+.....|..+....+.. ...+|.|+-... ...
T Consensus 173 G~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----~~g~d~v~d~~G---~~~ 241 (346)
T 4a2c_A 173 GLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----LRFNQLILETAG---VPQ 241 (346)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----GCSSEEEEECSC---SHH
T ss_pred chHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----cCCccccccccc---ccc
Confidence 4455566667666788999999998887764 56553344444556665555431 345888775443 356
Q ss_pred HHHHHHhcccCCeEEEEecc
Q 031568 82 YHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~~ 101 (157)
.++.+.++|+++|.++.-..
T Consensus 242 ~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 242 TVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp HHHHHHHHCCTTCEEEECCC
T ss_pred hhhhhhheecCCeEEEEEec
Confidence 78888999999999987543
No 303
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=96.12 E-value=0.009 Score=45.69 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=56.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+.....+|+++|.+++..+.+++ .|.+.-+.....|..+.+.++. ....+|+||-.... ..
T Consensus 179 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g~g~D~v~d~~g~---~~ 247 (352)
T 3fpc_A 179 GLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKAT----DGKGVDKVVIAGGD---VH 247 (352)
T ss_dssp HHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHHT----TTCCEEEEEECSSC---TT
T ss_pred HHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHHc----CCCCCCEEEECCCC---hH
Confidence 5556666665533489999999998887765 4543212222345555554442 13469999844332 34
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 248 ~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 248 TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp HHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEec
Confidence 6788889999999998744
No 304
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=96.12 E-value=0.019 Score=44.09 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=54.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.... ...+|+||-.... .
T Consensus 177 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g~----~ 242 (362)
T 2c0c_A 177 GQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQEY-----PEGVDVVYESVGG----A 242 (362)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHC-----TTCEEEEEECSCT----H
T ss_pred HHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHhc-----CCCCCEEEECCCH----H
Confidence 55556666654 6799999999988887765 4543111111234444444331 3469999865442 4
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 243 ~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 243 MFDLAVDALATKGRLIVI 260 (362)
T ss_dssp HHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 678888999999999874
No 305
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=96.11 E-value=0.028 Score=46.75 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=42.4
Q ss_pred cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc------ccHHHHHHHHhcccCCeEEEEe
Q 031568 42 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 42 ~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+++++.||+.+.++++... ....||.+|+|+..+ ...++|..+.++++|||.+..-
T Consensus 157 ~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 157 TLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 3678999999998875210 135799999998432 2467899999999999999864
No 306
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=96.07 E-value=0.011 Score=44.94 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=55.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.+.. ....+|+||-.... .
T Consensus 162 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~----~~~g~D~vid~~g~----~ 228 (334)
T 3qwb_A 162 GLILNQLLKMK-GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT----NGKGVDASFDSVGK----D 228 (334)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEECCGG----G
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh----CCCCceEEEECCCh----H
Confidence 45555566654 6799999999998887755 4543112222234445444442 13469999865542 4
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 229 ~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 229 TFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp GHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHhccCCEEEEEc
Confidence 5778889999999998743
No 307
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=96.04 E-value=0.015 Score=44.60 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=55.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.... ...+|+||-.... .
T Consensus 181 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----~~g~Dvvid~~g~----~ 246 (353)
T 4dup_A 181 GTTAIQLARAF-GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----GQGVDIILDMIGA----A 246 (353)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----SSCEEEEEESCCG----G
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----CCCceEEEECCCH----H
Confidence 44555566654 7799999999999888765 3543222222334444444432 3579999865543 2
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 247 ~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 247 YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp GHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHhccCCEEEEEE
Confidence 5677889999999998743
No 308
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=96.00 E-value=0.013 Score=45.34 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=57.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE--EccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~--~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|+++|.+++..+.++ +.|.+.-+... ..+..+.+.++. .+.+|+||-... .
T Consensus 206 G~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~-----~gg~D~vid~~g---~ 273 (378)
T 3uko_A 206 GLAVAEGAKTAGASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLT-----DGGVDYSFECIG---N 273 (378)
T ss_dssp HHHHHHHHHHHTCSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCcEEEccccCchhHHHHHHHhc-----CCCCCEEEECCC---C
Confidence 555666666554448999999999988775 45654212111 234555555542 347999985443 3
Q ss_pred HHHHHHHHhcccCC-eEEEEecc
Q 031568 80 CNYHERLMKLLKVG-GIAVYDNT 101 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~~ 101 (157)
...++.+.+.|++| |.++.-..
T Consensus 274 ~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 274 VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp HHHHHHHHHTBCTTTCEEEECSC
T ss_pred HHHHHHHHHHhhccCCEEEEEcc
Confidence 56788899999996 99987443
No 309
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=95.96 E-value=0.026 Score=43.47 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=55.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+.++. .+.+|+||-... .
T Consensus 208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~g~Dvvid~~G---~ 275 (376)
T 1e3i_A 208 GLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----AGGVDYSLDCAG---T 275 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----TSCBSEEEESSC---C
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----CCCccEEEECCC---C
Confidence 5556666766543489999999999887754 45531111111 23445454442 347999985433 3
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...++.+.+.|+++ |.++.-.
T Consensus 276 ~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 276 AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHHHHHHhhcCCCEEEEEC
Confidence 45678889999999 9998643
No 310
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=95.90 E-value=0.03 Score=43.14 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=55.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+.++. .+.+|+||-... .
T Consensus 205 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~ 272 (374)
T 1cdo_A 205 GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT-----NGGVDFSLECVG---N 272 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH-----TSCBSEEEECSC---C
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCceEEeccccchhHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 4555666666533489999999999887764 45531111111 23444454442 347999985443 2
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...++.+.+.|+++ |.++.-.
T Consensus 273 ~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 273 VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHHHHHHhhcCCcEEEEEc
Confidence 45678889999999 9998743
No 311
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=95.85 E-value=0.012 Score=44.40 Aligned_cols=86 Identities=7% Similarity=-0.002 Sum_probs=55.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.+.. ....+|+||-.... .
T Consensus 154 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~----~~~g~Dvvid~~g~----~ 220 (325)
T 3jyn_A 154 GSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT----DGKKCPVVYDGVGQ----D 220 (325)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTCCEEEEEESSCG----G
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh----CCCCceEEEECCCh----H
Confidence 45555566553 6799999999999887764 3543222222234444444432 13479998865542 3
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 221 ~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 221 TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp GHHHHHTTEEEEEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEEe
Confidence 5778889999999998743
No 312
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=95.84 E-value=0.024 Score=42.92 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=53.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|...-+.....+..+.+.+.. ....+|+||-.... .
T Consensus 159 G~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~~~~d~vi~~~g~----~ 225 (333)
T 1wly_A 159 GHIMVPWARHL-GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GGKGVDVVYDSIGK----D 225 (333)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TTCCEEEEEECSCT----T
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CCCCCeEEEECCcH----H
Confidence 55555566654 6799999999988887765 3432112111233334443332 13469999866543 4
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 226 ~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 226 TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp THHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 567888999999999874
No 313
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=95.73 E-value=0.029 Score=42.46 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=53.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..++.+++.. +.+|++++.+++..+.+++ .|....+.... .+..+.+.... .+.+|+++.....
T Consensus 159 G~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~~~d~vi~~~g~---- 224 (333)
T 1v3u_A 159 GSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS-----PDGYDCYFDNVGG---- 224 (333)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC-----TTCEEEEEESSCH----
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh-----CCCCeEEEECCCh----
Confidence 44455555553 6799999999988877633 35421122112 34445554442 3479999876642
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 225 ~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 225 EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 3578888999999999864
No 314
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=95.72 E-value=0.014 Score=45.17 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=53.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEc------cHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIES------EALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~------d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+ . ++.. |..+.+.++. ....+|+||-...
T Consensus 208 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~~~~v~~~~----~g~g~Dvvid~~g 276 (380)
T 1vj0_A 208 GLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD-L--TLNRRETSVEERRKAIMDIT----HGRGADFILEATG 276 (380)
T ss_dssp HHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS-E--EEETTTSCHHHHHHHHHHHT----TTSCEEEEEECSS
T ss_pred HHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc-E--EEeccccCcchHHHHHHHHh----CCCCCcEEEECCC
Confidence 5556666766533699999999998887763 5653 2 2322 2233333331 1236999985443
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
. ...++.+.+.|+++|.++.-.
T Consensus 277 ~---~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 277 D---SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp C---TTHHHHHHHHEEEEEEEEECC
T ss_pred C---HHHHHHHHHHHhcCCEEEEEe
Confidence 2 335778889999999998743
No 315
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=95.72 E-value=0.016 Score=44.14 Aligned_cols=86 Identities=20% Similarity=0.091 Sum_probs=54.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++...+.+|++++.+++..+.+++ .|.+.-+.....+..+.+..+. . +.+|+||-... ..
T Consensus 184 G~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~~~g---~~ 251 (347)
T 1jvb_A 184 GTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGADYVINASMQDPLAEIRRIT-----ESKGVDAVIDLNN---SE 251 (347)
T ss_dssp HHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT-----TTSCEEEEEESCC---CH
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccHHHHHHHHh-----cCCCceEEEECCC---CH
Confidence 4445555655437799999999998887754 3432111111123333344432 2 57999986654 24
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 252 ~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 252 KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp HHHTTGGGGEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 4678888999999999874
No 316
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=95.71 E-value=0.028 Score=43.31 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=55.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+.++. .+.+|+||--.. .
T Consensus 204 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~t-----~gg~Dvvid~~g---~ 271 (373)
T 1p0f_A 204 GFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEKT-----NGGVDYAVECAG---R 271 (373)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred HHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEecccccchHHHHHHHHh-----CCCCCEEEECCC---C
Confidence 5555666665533489999999999887764 56531111111 23445454442 347999985433 3
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...++.+.+.|+++ |.++.-.
T Consensus 272 ~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 272 IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEEc
Confidence 45678889999999 9998643
No 317
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=95.70 E-value=0.034 Score=42.39 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=54.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+ .+--...+..+.+.++. .+.+|+||-... ...
T Consensus 164 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~-----~~g~Dvv~d~~g---~~~ 229 (346)
T 3fbg_A 164 GSIATQIAKAY-GLRVITTASRNETIEWTKK----MGAD-IVLNHKESLLNQFKTQG-----IELVDYVFCTFN---TDM 229 (346)
T ss_dssp HHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCS-EEECTTSCHHHHHHHHT-----CCCEEEEEESSC---HHH
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCc-EEEECCccHHHHHHHhC-----CCCccEEEECCC---chH
Confidence 45555566654 6799999999998888776 3543 22111234444444441 457999885433 345
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.++.+.+.|+++|.++.
T Consensus 230 ~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 230 YYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHhccCCEEEE
Confidence 67888999999999975
No 318
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=95.67 E-value=0.028 Score=42.82 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=54.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+... .+..+.+.+.. ....+|+||-.... .
T Consensus 173 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~~v~~~~----~~~g~Dvvid~~g~----~ 238 (342)
T 4eye_A 173 GTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAKAVREAT----GGAGVDMVVDPIGG----P 238 (342)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHHHHHHHT----TTSCEEEEEESCC------
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHHHHHHHh----CCCCceEEEECCch----h
Confidence 44555566654 6799999999999887776 3543212222 44444444442 13369999865543 2
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 239 ~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp CHHHHHHTEEEEEEEEEC-
T ss_pred HHHHHHHhhcCCCEEEEEE
Confidence 4677889999999998743
No 319
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=95.65 E-value=0.037 Score=43.00 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=56.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEcc-HHHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d-~~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|+.++.+|+.....+|+++|.+++..+.+++ .|.+ .+.....+ ..+.+.++. ....+|+||-......
T Consensus 198 G~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t----~g~g~Dvvid~~G~~~~~ 268 (398)
T 1kol_A 198 GLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL----GEPEVDCAVDAVGFEARG 268 (398)
T ss_dssp HHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH----SSSCEEEEEECCCTTCBC
T ss_pred HHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh----CCCCCCEEEECCCCcccc
Confidence 5556667766544489999999999888764 4642 22211122 344444432 1346999985443221
Q ss_pred ----------cHHHHHHHHhcccCCeEEEEec
Q 031568 79 ----------YCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 79 ----------~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+++|.++.-.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 269 HGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred cccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 1246888899999999998743
No 320
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=95.64 E-value=0.016 Score=45.20 Aligned_cols=89 Identities=16% Similarity=0.088 Sum_probs=55.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcc--
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDN-- 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~-- 78 (157)
|+.++.+|+.....+|+++|.+++..+.+++ .|. +-+.....|. .+.+..+. ....+|+||-......
T Consensus 198 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----~g~g~Dvvid~~g~~~~~ 268 (398)
T 2dph_A 198 GRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----GKPEVDCGVDAVGFEAHG 268 (398)
T ss_dssp HHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----SSSCEEEEEECSCTTCBC
T ss_pred HHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----CCCCCCEEEECCCCcccc
Confidence 5555666665533499999999998877654 454 2222222333 44444442 1236999985443221
Q ss_pred ---------cHHHHHHHHhcccCCeEEEEe
Q 031568 79 ---------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ---------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
....++.+.+.|+++|.++.-
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 269 LGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred ccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 124688889999999999863
No 321
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=95.64 E-value=0.022 Score=43.35 Aligned_cols=86 Identities=15% Similarity=-0.006 Sum_probs=53.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.++. ....+|+||-.... ..
T Consensus 158 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~----~~~g~Dvvid~~g~---~~ 225 (340)
T 3gms_A 158 GHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELT----NGIGADAAIDSIGG---PD 225 (340)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEESSCH---HH
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHh----CCCCCcEEEECCCC---hh
Confidence 44455555543 6799999999999888876 3543222222234445444442 13479999865442 22
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.....+.|+++|.++.-.
T Consensus 226 -~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 226 -GNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp -HHHHHHTEEEEEEEEECC
T ss_pred -HHHHHHHhcCCCEEEEEe
Confidence 334458999999998744
No 322
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=95.64 E-value=0.037 Score=42.61 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=55.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+.++. .+.+|+||-... .
T Consensus 204 G~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~ 271 (374)
T 2jhf_A 204 GLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGATECVNPQDYKKPIQEVLTEMS-----NGGVDFSFEVIG---R 271 (374)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCceEecccccchhHHHHHHHHh-----CCCCcEEEECCC---C
Confidence 4555566666533489999999999887754 45531111111 23444454442 347999985443 2
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...++.+.+.|+++ |.++.-.
T Consensus 272 ~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 272 LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHHHHHHHHHhhcCCcEEEEec
Confidence 45678889999999 9998743
No 323
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=95.60 E-value=0.033 Score=43.48 Aligned_cols=89 Identities=7% Similarity=0.030 Sum_probs=53.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.....|..+.+.++. ....+|+||-..... ..
T Consensus 226 G~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~t----~g~g~D~vid~~g~~--~~ 295 (404)
T 3ip1_A 226 GLAAVAILKHAGASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDYT----NGLGAKLFLEATGVP--QL 295 (404)
T ss_dssp HHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT----TTCCCSEEEECSSCH--HH
T ss_pred HHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHHh----CCCCCCEEEECCCCc--HH
Confidence 5556667766544499999999999888865 3543112222245555555442 134699998544322 12
Q ss_pred HHHHHHhcc----cCCeEEEEec
Q 031568 82 YHERLMKLL----KVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L----~~gG~iv~~~ 100 (157)
.++.+.+.| +++|.++.-.
T Consensus 296 ~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 296 VWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HHHHHHHHHHHCSCCCCEEEECS
T ss_pred HHHHHHHHHHhccCCCcEEEEeC
Confidence 344444555 9999998743
No 324
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.045 Score=41.69 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=54.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEE-EccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..++.+++.. +.+|++++.+++..+.+++ .|...-+.+. ..+..+.+.+.. .+.+|+|+.... ..
T Consensus 183 G~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~-----~~~~D~vi~~~g---~~ 249 (347)
T 2hcy_A 183 GSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT-----DGGAHGVINVSV---SE 249 (347)
T ss_dssp HHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH-----TSCEEEEEECSS---CH
T ss_pred HHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh-----CCCCCEEEECCC---cH
Confidence 44455555554 6799999999988776654 4543112111 234444554442 237999987654 34
Q ss_pred HHHHHHHhcccCCeEEEEec
Q 031568 81 NYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++.+.+.|+++|.++.-.
T Consensus 250 ~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 250 AAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHHHHTTSEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCEEEEEe
Confidence 57888899999999998743
No 325
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=95.46 E-value=0.04 Score=42.36 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=55.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE--ccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~--~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.....+|++++.+++..+.+++ .|.+.-+.... .+..+.+.++. .+.+|+||-... .
T Consensus 203 G~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~~~v~~~~-----~~g~D~vid~~g---~ 270 (373)
T 2fzw_A 203 GLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEMT-----DGGVDYSFECIG---N 270 (373)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHHT-----TSCBSEEEECSC---C
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEeccccccccHHHHHHHHh-----CCCCCEEEECCC---c
Confidence 4555566665533489999999999888764 35431111111 23445454442 347999985443 2
Q ss_pred HHHHHHHHhcccCC-eEEEEec
Q 031568 80 CNYHERLMKLLKVG-GIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~g-G~iv~~~ 100 (157)
...++.+.+.|+++ |.++.-.
T Consensus 271 ~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 271 VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHHHHHhhccCCcEEEEEe
Confidence 45678889999999 9998743
No 326
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=95.45 E-value=0.046 Score=41.36 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=54.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++.. +.+|++++.+++..+.+.+ +.|...-+.....+..+.+.+.. .+.+|+||-... ..
T Consensus 163 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~-----~~~~d~vi~~~g----~~ 229 (336)
T 4b7c_A 163 GSVAGQIARLK-GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKREC-----PKGIDVFFDNVG----GE 229 (336)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHHC-----TTCEEEEEESSC----HH
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHhc-----CCCceEEEECCC----cc
Confidence 44455555554 6799999999988776632 34553212222234444444432 357999886554 24
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 230 ~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 230 ILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred hHHHHHHHHhhCCEEEEE
Confidence 688889999999999874
No 327
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=95.41 E-value=0.037 Score=42.05 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=54.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|.+.-+.....+..+.+.+. .+.+|+||-... ...
T Consensus 177 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~~~~d~vid~~g---~~~ 242 (339)
T 1rjw_A 177 GHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------VGGVHAAVVTAV---SKP 242 (339)
T ss_dssp HHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------HSSEEEEEESSC---CHH
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------hCCCCEEEECCC---CHH
Confidence 55566666654 6799999999998887754 454311111112343444333 146999986543 245
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 243 ~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 243 AFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHhhcCCEEEEe
Confidence 678888999999999864
No 328
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=95.37 E-value=0.02 Score=44.03 Aligned_cols=86 Identities=15% Similarity=0.075 Sum_probs=55.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+. .. .+..+.+..+. ....+|+||-....
T Consensus 202 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~----~g~g~D~vid~~g~---- 267 (363)
T 3uog_A 202 ALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALT----GDRGADHILEIAGG---- 267 (363)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHH----TTCCEEEEEEETTS----
T ss_pred HHHHHHHHHHc-CCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHh----CCCCceEEEECCCh----
Confidence 55566666654 6799999999998887755 45532222 11 34445454443 13479999865542
Q ss_pred HHHHHHHhcccCCeEEEEecc
Q 031568 81 NYHERLMKLLKVGGIAVYDNT 101 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~~~ 101 (157)
..++.+.+.|+++|.++.-..
T Consensus 268 ~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 268 AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp SCHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHHHhhcCCEEEEEec
Confidence 246678889999999987543
No 329
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.024 Score=43.20 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=54.4
Q ss_pred cccHHHHHhhC-CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGN-KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~-~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+|+.. |+.+|++++.+++..+.+++ .|.+ . ++..+- .+...++. ....+|+||-... .
T Consensus 183 G~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~-~--vi~~~~~~~~~~~~~----~g~g~D~vid~~g---~ 248 (344)
T 2h6e_A 183 AVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD-Y--VSEMKDAESLINKLT----DGLGASIAIDLVG---T 248 (344)
T ss_dssp HHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS-E--EECHHHHHHHHHHHH----TTCCEEEEEESSC---C
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC-E--EeccccchHHHHHhh----cCCCccEEEECCC---C
Confidence 45555566643 47899999999999887765 3543 2 232111 23333332 1337999985543 2
Q ss_pred HHHHHHHHhcccCCeEEEEec
Q 031568 80 CNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...++.+.+.|+++|.++.-.
T Consensus 249 ~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 249 EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp HHHHHHHHHHEEEEEEEEECC
T ss_pred hHHHHHHHHHhhcCCEEEEeC
Confidence 446788899999999998743
No 330
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=95.28 E-value=0.025 Score=42.71 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=52.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|...-+.....+..+.+.+.. ....+|++|-... ..
T Consensus 154 G~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~D~vi~~~g----~~ 220 (327)
T 1qor_A 154 GLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----GGKKVRVVYDSVG----RD 220 (327)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTCCEEEEEECSC----GG
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHh----CCCCceEEEECCc----hH
Confidence 44455555543 6799999999988887765 3432111111223333333331 1346999987665 34
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 221 ~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 221 TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp GHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 577888999999999874
No 331
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=95.28 E-value=0.028 Score=42.82 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=55.0
Q ss_pred cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++.. +. +|++++.+++..+.+++ .|.+.-+.....+..+.+.++. ....+|+||-... ..
T Consensus 180 G~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~----~g~g~D~vid~~g---~~ 247 (348)
T 2d8a_A 180 GLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVKEVMDIT----DGNGVDVFLEFSG---AP 247 (348)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHHT----TTSCEEEEEECSC---CH
T ss_pred HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHHHHHHHc----CCCCCCEEEECCC---CH
Confidence 55566666665 55 89999999998887764 3442111111234444444432 1346999985543 34
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 248 ~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 248 KALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 5678888999999999874
No 332
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=95.28 E-value=0.031 Score=42.63 Aligned_cols=86 Identities=7% Similarity=-0.053 Sum_probs=54.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ .|.+.-+.....+..+.+.++.. ...+|+||-... ..
T Consensus 178 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D~vid~~g----~~ 244 (349)
T 3pi7_A 178 CKLIIGLAKEE-GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPRIFLDAVT----GP 244 (349)
T ss_dssp HHHHHHHHHHH-TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCCEEEESSC----HH
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCcEEEECCC----Ch
Confidence 44555566654 6799999999999888764 45432222222344444444321 236999985443 22
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 245 ~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 245 LASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp HHHHHHHHSCTTCEEEECC
T ss_pred hHHHHHhhhcCCCEEEEEe
Confidence 3577889999999998743
No 333
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=95.26 E-value=0.06 Score=41.06 Aligned_cols=89 Identities=10% Similarity=0.006 Sum_probs=53.8
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|.+.-+.... .+..+.+.+.... .....+|+||-... ..
T Consensus 181 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~-~~g~g~D~vid~~g---~~ 251 (352)
T 1e3j_A 181 GLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS-AIGDLPNVTIDCSG---NE 251 (352)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH-HSSSCCSEEEECSC---CH
T ss_pred HHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcc-ccCCCCCEEEECCC---CH
Confidence 44555566654 6679999999998887754 46531122111 3333333332100 00246999985543 24
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 252 ~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 252 KCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 4678888999999999874
No 334
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=95.22 E-value=0.064 Score=40.95 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=53.8
Q ss_pred cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++.. +. +|++++.+++..+.+++ +.|....+.....+..+.+.+.. .+.+|++|-... .
T Consensus 174 G~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~-----~~~~d~vi~~~G----~ 240 (357)
T 2zb4_A 174 GSVAGQIGHFL-GCSRVVGICGTHEKCILLTS---ELGFDAAINYKKDNVAEQLRESC-----PAGVDVYFDNVG----G 240 (357)
T ss_dssp HHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH---TSCCSEEEETTTSCHHHHHHHHC-----TTCEEEEEESCC----H
T ss_pred HHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHH---HcCCceEEecCchHHHHHHHHhc-----CCCCCEEEECCC----H
Confidence 44555566554 56 99999999887776654 24543112111223444444331 236999986654 2
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 241 ~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 241 NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHhccCcEEEEE
Confidence 5688889999999999874
No 335
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=95.07 E-value=0.038 Score=42.05 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=53.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|...-+.....+..+.+.+.. ....+|+||-... . .
T Consensus 180 G~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~~~~d~vi~~~g-~---~ 246 (343)
T 2eih_A 180 SVAAIQIAKLF-GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT----GGKGADKVVDHTG-A---L 246 (343)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT----TTTCEEEEEESSC-S---S
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh----CCCCceEEEECCC-H---H
Confidence 55555566654 6799999999998888764 3543111111223334444332 1247999987665 2 2
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 247 ~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 247 YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp SHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 467778899999999874
No 336
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=94.96 E-value=0.093 Score=40.12 Aligned_cols=86 Identities=12% Similarity=0.001 Sum_probs=55.3
Q ss_pred cccHHHHHhhCCCcE-EEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-----ccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~-v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-----~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|+.+..+|+.. +++ |++++.+++..+.+++. . ..-+.... .|..+.+..+. ....+|+||-...
T Consensus 192 G~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t----~g~g~Dvvid~~g 261 (363)
T 3m6i_A 192 GLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVESF----GGIEPAVALECTG 261 (363)
T ss_dssp HHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHHT----SSCCCSEEEECSC
T ss_pred HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHHh----CCCCCCEEEECCC
Confidence 55556666665 554 99999999999998875 2 11233321 23333343332 1347999985443
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+++|.++.-.
T Consensus 262 ---~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 262 ---VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp ---CHHHHHHHHHHSCTTCEEEECC
T ss_pred ---ChHHHHHHHHHhcCCCEEEEEc
Confidence 3456788899999999998743
No 337
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=94.80 E-value=0.42 Score=30.09 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=50.4
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
.++.+|..+|-++......++.++..|. .+. ...+..+.+..+. ..++|+|++|...+ ...++++.+.+.
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGA--TTV-LAADGVDALELLG-----GFTPDLMICDIAMPRMNGLKLLEHIRNR 76 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHT-----TCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 3577999999999999999999998875 343 4677887777663 56799999997533 234556655543
No 338
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.78 E-value=0.062 Score=40.20 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=35.3
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA 50 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~ 50 (157)
+|-.|+.+++..-+.+++++|+++++++.|+++++.......++ +.+|+
T Consensus 244 ~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~-~~~~~ 292 (297)
T 2zig_A 244 AGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAREVPGFSLE-VLDGA 292 (297)
T ss_dssp CTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEE-EECC-
T ss_pred CCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHhccccchh-hCCcc
Confidence 46667776665568899999999999999999998764333343 33444
No 339
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=94.77 E-value=0.42 Score=30.40 Aligned_cols=78 Identities=12% Similarity=-0.066 Sum_probs=54.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~ 89 (157)
...+|..+|-++...+..+..++..|+ .+.....+..+.+..+. ...+|+|++|...+ ...++++.+.+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DLRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 567899999999999999999998775 35434677777776554 34699999996542 334556666554
Q ss_pred ccCCeEEEE
Q 031568 90 LKVGGIAVY 98 (157)
Q Consensus 90 L~~gG~iv~ 98 (157)
..--++++
T Consensus 81 -~~~~ii~l 88 (140)
T 3cg0_A 81 -CNLPIIFI 88 (140)
T ss_dssp -SCCCEEEE
T ss_pred -CCCCEEEE
Confidence 33334444
No 340
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=94.74 E-value=0.083 Score=40.19 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=53.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|+++ .+++..+.+++ .|... +. ...+..+.+.... ....+|+||-.... .
T Consensus 164 G~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~~~g~D~vid~~g~----~ 227 (343)
T 3gaz_A 164 GHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----AGQGFDLVYDTLGG----P 227 (343)
T ss_dssp HHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----TTSCEEEEEESSCT----H
T ss_pred HHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----cCCCceEEEECCCc----H
Confidence 45555566654 6799999 88888776654 45542 43 3344555444432 13579998855442 4
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 228 ~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 228 VLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHhcCCeEEEE
Confidence 678888999999999873
No 341
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=94.70 E-value=0.079 Score=40.49 Aligned_cols=86 Identities=8% Similarity=0.020 Sum_probs=53.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|.+.-+.....+..+.+.+.. ....+|++|-.....
T Consensus 176 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~~~~d~vi~~~G~~---- 242 (354)
T 2j8z_A 176 GTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKFT----KGAGVNLILDCIGGS---- 242 (354)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TTSCEEEEEESSCGG----
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHHh----cCCCceEEEECCCch----
Confidence 44455555554 6799999999998887743 3432111111223334443332 134699998766532
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 243 ~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 243 YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp GHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHhccCCCEEEEEe
Confidence 4667788999999998743
No 342
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=94.60 E-value=0.12 Score=39.10 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=53.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~-~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..++.+++.. +.+|++++.+++..+.+++ +.|...-+.... .+..+.+.... .+.+|+||-... .
T Consensus 169 G~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~-----~~~~d~vi~~~g----~ 235 (345)
T 2j3h_A 169 GQLVGQLAKMM-GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF-----PNGIDIYFENVG----G 235 (345)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC-----TTCEEEEEESSC----H
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh-----CCCCcEEEECCC----H
Confidence 44445555554 6799999999988877653 345431111111 23444444431 346999986654 2
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 236 ~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 236 KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEE
Confidence 4678889999999999874
No 343
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=94.53 E-value=0.51 Score=29.95 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=52.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc-------ccHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERL 86 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~-------~~~~~~~~~ 86 (157)
..+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l 74 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFS--KVI-TLSSPVSLSTVLR-----EENPEVVLLDMNFTSGINNGNEGLFWLHEI 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSS--EEE-EECCHHHHHHHHH-----HSCEEEEEEETTTTC-----CCHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHH-----cCCCCEEEEeCCcCCCCCCCccHHHHHHHH
Confidence 46899999999999999999987765 344 5567777766554 35699999997543 234555655
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+....--++++
T Consensus 75 ~~~~~~~~ii~l 86 (140)
T 2qr3_A 75 KRQYRDLPVVLF 86 (140)
T ss_dssp HHHCTTCCEEEE
T ss_pred HhhCcCCCEEEE
Confidence 554333344444
No 344
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=94.52 E-value=0.57 Score=30.48 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
....+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+.
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGC--NII-TFTSPLDALEALK-----GTSVQLVISDMRMPEMGGEVFLEQVAKS 76 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESCHHHHHHHHT-----TSCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999988765 354 5677777776663 45799999997543 234455555443
No 345
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=94.52 E-value=0.087 Score=40.25 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=52.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|...-+.....+..+.+.+.. ....+|+||-... ..
T Consensus 184 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~~~~D~vi~~~G----~~ 250 (351)
T 1yb5_A 184 GLAACQIARAY-GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----GEKGIDIIIEMLA----NV 250 (351)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----CTTCEEEEEESCH----HH
T ss_pred HHHHHHHHHHC-CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----CCCCcEEEEECCC----hH
Confidence 44455555553 6799999999988876643 4543112211223333333332 1347999986543 23
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 251 ~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 251 NLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhccCCCEEEEE
Confidence 567788999999999874
No 346
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=94.50 E-value=0.5 Score=30.70 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=53.2
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
.+..+|..+|-++...+..++.++..|.. .+-....+..+.+..+. ...+|+|++|...+ ...++++.+.+.
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIK-----AHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 35789999999999999999999887642 23335677777776654 35799999997533 234556665544
Q ss_pred ccCCeEE
Q 031568 90 LKVGGIA 96 (157)
Q Consensus 90 L~~gG~i 96 (157)
.+...+
T Consensus 87 -~~~~~i 92 (152)
T 3eul_A 87 -ELPTRV 92 (152)
T ss_dssp -TCSCEE
T ss_pred -CCCCeE
Confidence 344333
No 347
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=94.44 E-value=0.16 Score=39.12 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=52.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.. +++|++++.+++..+.+++ .|.+ . ++...-.+.+..+ .+.+|+||-..... .
T Consensus 207 G~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----lGa~-~--vi~~~~~~~~~~~------~~g~Dvvid~~g~~---~ 269 (369)
T 1uuf_A 207 GHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----LGAD-E--VVNSRNADEMAAH------LKSFDFILNTVAAP---H 269 (369)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----HTCS-E--EEETTCHHHHHTT------TTCEEEEEECCSSC---C
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc-E--EeccccHHHHHHh------hcCCCEEEECCCCH---H
Confidence 44555566654 6789999999999888765 4543 2 2322222333333 25799998554432 2
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 270 ~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 270 NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 356778999999999864
No 348
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=94.30 E-value=0.069 Score=40.83 Aligned_cols=83 Identities=10% Similarity=0.130 Sum_probs=52.4
Q ss_pred cccH-HHHH-hhCCCcE-EEEEeCChh---HHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPT-KLFM-TGNKILQ-ITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st-~~l~-~~~~~~~-v~~ve~~~~---~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|+.+ ..+| +.. +++ |++++.+++ ..+.+++ .|.+ .+.....|..+ +.++ . . .+|+||-...
T Consensus 185 G~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~~-i~~~-~----g-g~Dvvid~~g 251 (357)
T 2b5w_A 185 GLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVED-VPDV-Y----E-QMDFIYEATG 251 (357)
T ss_dssp HHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGGG-HHHH-S----C-CEEEEEECSC
T ss_pred HHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHHH-HHHh-C----C-CCCEEEECCC
Confidence 4555 5566 544 555 999999988 8777654 4542 23111224444 4433 1 3 7999984433
Q ss_pred CcccHHHHHHHHhcccCCeEEEEec
Q 031568 76 KDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 76 ~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
....++.+.+.|+++|.++.-.
T Consensus 252 ---~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 252 ---FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp ---CHHHHHHHHHHEEEEEEEEECC
T ss_pred ---ChHHHHHHHHHHhcCCEEEEEe
Confidence 2446788899999999998743
No 349
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=94.25 E-value=0.68 Score=30.36 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=52.5
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC--ceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKD--NYCNYHERLMKLL 90 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~--~fD~I~iD~~~~--~~~~~~~~~~~~L 90 (157)
.+|..+|-++...+..++.++..|. .+.....+..+.+..+. .. .+|+|++|...+ .-.++++.+.+.-
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~-----~~~~~~dliilD~~l~~~~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYK-----NHYPNIDIVTLXITMPKMDGITCLSNIMEFD 109 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHGGGCCEEEECSSCSSSCHHHHHHHHHHHC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHH-----hcCCCCCEEEEeccCCCccHHHHHHHHHhhC
Confidence 4899999999999999999988875 34336778877776654 23 799999997543 2345555555433
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
..--+|++
T Consensus 110 ~~~~ii~l 117 (157)
T 3hzh_A 110 KNARVIMI 117 (157)
T ss_dssp TTCCEEEE
T ss_pred CCCcEEEE
Confidence 22234444
No 350
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=94.19 E-value=0.64 Score=29.66 Aligned_cols=77 Identities=8% Similarity=-0.082 Sum_probs=53.5
Q ss_pred CcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCc-c--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKD-N--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~-~--~~~~~~~~~~ 88 (157)
..+|..+|-++......+..++. .|. .+. ...+..+.+..+. . ..+|+|++|...+ . ..++++.+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 56899999999999999999998 765 454 6677777776553 4 6899999998655 2 2344555544
Q ss_pred --cccCCeEEEE
Q 031568 89 --LLKVGGIAVY 98 (157)
Q Consensus 89 --~L~~gG~iv~ 98 (157)
....--+|++
T Consensus 76 ~~~~~~~~ii~l 87 (140)
T 3lua_A 76 NSRTANTPVIIA 87 (140)
T ss_dssp SGGGTTCCEEEE
T ss_pred CcccCCCCEEEE
Confidence 3333344444
No 351
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=94.16 E-value=0.19 Score=33.09 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=50.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
.+-+|..||=++......++.++..|+. .+ ....|..+.+..+. ...||+|++|-..+. -.+..+.+.
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~-~v-~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir 80 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFN-NT-QEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR 80 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCc-EE-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 5678999999999999999999999874 23 34567877776654 457999999975443 244555554
No 352
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=94.10 E-value=0.59 Score=28.94 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=52.5
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc--
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL-- 89 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~-- 89 (157)
.+|..+|-++...+..++.++..|. ++. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGF--TVD-ETTDGKGSVEQIR-----RDRPDLVVLAVDLSAGQNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTC--EEE-EECCHHHHHHHHH-----HHCCSEEEEESBCGGGCBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCc--eEE-EecCHHHHHHHHH-----hcCCCEEEEeCCCCCCCCHHHHHHHHhcCcc
Confidence 4899999999999999999998776 453 5567777766553 34699999997543 234556666554
Q ss_pred ccCCeEEEE
Q 031568 90 LKVGGIAVY 98 (157)
Q Consensus 90 L~~gG~iv~ 98 (157)
...--++++
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 233345555
No 353
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=94.09 E-value=0.097 Score=39.63 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=47.0
Q ss_pred hCCC-cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--------c---
Q 031568 11 GNKI-LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------N--- 78 (157)
Q Consensus 11 ~~~~-~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--------~--- 78 (157)
..|. +.|+++|+.|-.. .. . .+++||..+.. ..++||+|+.|..+. .
T Consensus 134 ~~p~g~~VVavDL~~~~s-----------da-~-~~IqGD~~~~~--------~~~k~DLVISDMAPNtTG~~D~d~~Rs 192 (344)
T 3r24_A 134 WLPTGTLLVDSDLNDFVS-----------DA-D-STLIGDCATVH--------TANKWDLIISDMYDPRTKHVTKENDSK 192 (344)
T ss_dssp HSCTTCEEEEEESSCCBC-----------SS-S-EEEESCGGGEE--------ESSCEEEEEECCCCTTSCSSCSCCCCC
T ss_pred hCCCCcEEEEeeCccccc-----------CC-C-eEEEccccccc--------cCCCCCEEEecCCCCcCCccccchhHH
Confidence 4565 6999999987542 11 2 45999976521 147899999996321 1
Q ss_pred ---cHHHHHHHHhcccCCeEEEEe
Q 031568 79 ---YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ---~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+..++.+.+.|+|||-+++.
T Consensus 193 ~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 193 EGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp CTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCEEEEE
Confidence 234466677899999999997
No 354
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.01 E-value=0.75 Score=29.89 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=53.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L 90 (157)
...+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+.-
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPY--TLH-FARDATQALQLLA-----SREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCc--EEE-EECCHHHHHHHHH-----cCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 356899999999999999999988764 343 5567777776664 45799999997543 2345566655532
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
..--+|++
T Consensus 85 ~~~~ii~~ 92 (153)
T 3hv2_A 85 PSTTRILL 92 (153)
T ss_dssp TTSEEEEE
T ss_pred CCCeEEEE
Confidence 22334443
No 355
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=93.94 E-value=0.71 Score=29.33 Aligned_cols=69 Identities=6% Similarity=0.117 Sum_probs=50.0
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 12 NKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 12 ~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. . ..+|+|++|...+. ..++++.+.+
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~~dlvilD~~l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRS-----QLSTCDLLIVSDQLVDLSIFSLLDIVKE 84 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGG-----GGGSCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCC--EEE-EeCCHHHHHHHHH-----hCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3688999999999999999999988775 343 5567777776553 4 57999999975432 3445555554
No 356
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=93.88 E-value=0.24 Score=38.09 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=52.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+.. +++|+++- +++..+.++ ++|.+.-+.....|..+.+.++. .+.+|+||-... ...
T Consensus 178 G~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t-----~g~~d~v~d~~g---~~~ 243 (371)
T 3gqv_A 178 ATVTMQMLRLS-GYIPIATC-SPHNFDLAK----SRGAEEVFDYRAPNLAQTIRTYT-----KNNLRYALDCIT---NVE 243 (371)
T ss_dssp HHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSTTHHHHHHHHT-----TTCCCEEEESSC---SHH
T ss_pred HHHHHHHHHHC-CCEEEEEe-CHHHHHHHH----HcCCcEEEECCCchHHHHHHHHc-----cCCccEEEECCC---chH
Confidence 44455566554 67888884 888877665 45654223333345555555542 345999985433 345
Q ss_pred HHHHHHhcc-cCCeEEEEec
Q 031568 82 YHERLMKLL-KVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L-~~gG~iv~~~ 100 (157)
.++.+.+.| +++|.++.-.
T Consensus 244 ~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 244 STTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp HHHHHHHHSCTTCEEEEESS
T ss_pred HHHHHHHHhhcCCCEEEEEe
Confidence 677888888 6999998743
No 357
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=93.82 E-value=0.1 Score=42.42 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=55.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH-HHHhhcCCCCCceeEEEEcCCCcc--------------
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKDN-------------- 78 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l-~~~~~~~~~~~~fD~I~iD~~~~~-------------- 78 (157)
...++++|+++.++.+|+-|+-..|.. ...+..+|....- ... ....+||+|+.+++...
T Consensus 254 ~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~ 328 (530)
T 3ufb_A 254 ESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLREM----GDKDRVDVILTNPPFGGEEEKGILGNFPEDM 328 (530)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGGGC----CGGGCBSEEEECCCSSCBCCHHHHTTSCGGG
T ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchhhh----cccccceEEEecCCCCccccccccccCchhc
Confidence 357999999999999999999888875 4567888876431 110 01347999999985310
Q ss_pred -----cHHHHHHHHhccc-------CCeEEEE
Q 031568 79 -----YCNYHERLMKLLK-------VGGIAVY 98 (157)
Q Consensus 79 -----~~~~~~~~~~~L~-------~gG~iv~ 98 (157)
...+++.+...|+ +||.+.+
T Consensus 329 ~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 329 QTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp CCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred ccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 1235666666665 6887654
No 358
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.79 E-value=0.57 Score=29.54 Aligned_cols=74 Identities=22% Similarity=0.130 Sum_probs=49.4
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~ 92 (157)
-+|..+|-++...+..++.++..|. .+.....+..+.+..+. ...+|+|++|...+ ...++++.+.+. .|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~~ 73 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRKR-QY 73 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-TC
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hcCCCEEEEecCCCCCChHHHHHHHHhc-CC
Confidence 3789999999999999999998763 34334556666655543 35799999997543 234556665543 34
Q ss_pred CeEE
Q 031568 93 GGIA 96 (157)
Q Consensus 93 gG~i 96 (157)
+..+
T Consensus 74 ~~~i 77 (134)
T 3f6c_A 74 SGII 77 (134)
T ss_dssp CSEE
T ss_pred CCeE
Confidence 4333
No 359
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=93.74 E-value=0.14 Score=40.13 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=34.8
Q ss_pred CcccHHHHH-hhCC-CcEEEEEeCChhHHHHHHHHHHH--cCCC-CcEEEEE
Q 031568 1 MHLPTKLFM-TGNK-ILQITAIDVNRETYEIGLPIIKK--AGVD-HKINFIE 47 (157)
Q Consensus 1 ~g~st~~l~-~~~~-~~~v~~ve~~~~~~~~a~~~~~~--~~~~-~~i~~~~ 47 (157)
.|..|..++ +..+ .++|+++|++|..++..++|++. ++.. ++++++.
T Consensus 237 ~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~ 288 (409)
T 2py6_A 237 IGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 288 (409)
T ss_dssp TSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence 376777777 4444 48999999999999999999998 3222 4666553
No 360
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=93.62 E-value=0.082 Score=39.81 Aligned_cols=84 Identities=7% Similarity=0.017 Sum_probs=49.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++.. +++|++++.+++..+.+++ .|.+.-+.....+ .+.+..+ ..+.+|+||-.... .
T Consensus 163 G~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~~~~~~~-----~~~~~d~vid~~g~----~ 227 (328)
T 1xa0_A 163 GSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-AERIRPL-----DKQRWAAAVDPVGG----R 227 (328)
T ss_dssp HHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----TTCSEEEECC----------C-----CSCCEEEEEECSTT----T
T ss_pred HHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-HHHHHHh-----cCCcccEEEECCcH----H
Confidence 44455566554 6789999999988887754 4543212111111 1222222 13469998754432 2
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.++++|.++.-.
T Consensus 228 ~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 228 TLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp THHHHHHTEEEEEEEEECS
T ss_pred HHHHHHHhhccCCEEEEEe
Confidence 4677889999999998743
No 361
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=93.43 E-value=0.9 Score=28.86 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=50.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
+..+|..+|-++......++.++..|. .+ ....+..+.+..+. ...+|+|++|...+ .-.++++.+.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~--~v-~~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGF--DS-DMVHSAAQALEQVA-----RRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCC--eE-EEECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457899999999999999999998776 34 45567777776664 45799999997543 23455666554
No 362
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=93.43 E-value=0.056 Score=41.07 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=53.2
Q ss_pred cccHHHHHhhCCCc-EEEEEeCChhHHHHHHHHHHHcCCCCcE-EEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc
Q 031568 2 HLPTKLFMTGNKIL-QITAIDVNRETYEIGLPIIKKAGVDHKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY 79 (157)
Q Consensus 2 g~st~~l~~~~~~~-~v~~ve~~~~~~~~a~~~~~~~~~~~~i-~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~ 79 (157)
|+.++.+++.. +. +|++++.+++..+.+++. . +.+ .....+..+.+.++. ...+|+||-... .
T Consensus 177 G~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a-----~~v~~~~~~~~~~~~~~~~-----~~g~D~vid~~g---~ 241 (343)
T 2dq4_A 177 GLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-A-----DRLVNPLEEDLLEVVRRVT-----GSGVEVLLEFSG---N 241 (343)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-C-----SEEECTTTSCHHHHHHHHH-----SSCEEEEEECSC---C
T ss_pred HHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-H-----HhccCcCccCHHHHHHHhc-----CCCCCEEEECCC---C
Confidence 55555666665 55 899999999888877653 1 111 111234444444432 346999985543 3
Q ss_pred HHHHHHHHhcccCCeEEEEe
Q 031568 80 CNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 80 ~~~~~~~~~~L~~gG~iv~~ 99 (157)
...++.+.+.|+++|.++.-
T Consensus 242 ~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 242 EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCEEEEE
Confidence 45678889999999999864
No 363
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=93.42 E-value=0.55 Score=29.92 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=48.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc----cHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN----YCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~----~~~~~~~~~~~ 89 (157)
..+|..+|-++......++.++..|. .+. ...+..+.+..+. ..++|+|++|...+. ..++++.+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~ 77 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDV--TIQ-CFASAESFMRQQI-----SDDAIGMIIEAHLEDKKDSGIELLETLVKR 77 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSS--EEE-EESSHHHHTTSCC-----CTTEEEEEEETTGGGBTTHHHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----ccCCCEEEEeCcCCCCCccHHHHHHHHHhC
Confidence 56899999999999999999987765 344 5567777765442 467999999976443 23445555443
No 364
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=93.41 E-value=1.2 Score=30.15 Aligned_cols=69 Identities=13% Similarity=0.013 Sum_probs=50.7
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
...+|..||-++......+..++..|. .+ ....+..+.+..+. ...+|+|++|...+ .-.++++.+.+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 76 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGY--AV-RQAHNKDEALKLAG-----AEKFEFITVXLHLGNDSGLSLIAPLCDL 76 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTC--EE-EEECSHHHHHHHHT-----TSCCSEEEECSEETTEESHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----hCCCCEEEEeccCCCccHHHHHHHHHhc
Confidence 356899999999999999999998775 35 56678888877663 56799999996432 234556665543
No 365
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=93.39 E-value=0.7 Score=29.67 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=48.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
...+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF--DII-QCGNAIEAVPVAV-----KTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHH-----cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 467899999999999999999988775 354 5667777766554 34699999997543 23455565554
No 366
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=93.36 E-value=0.88 Score=28.52 Aligned_cols=69 Identities=10% Similarity=0.006 Sum_probs=49.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
...+|..+|-++......++.++..|. .+. ...+..+.+..+. ..++|+|++|...+. ..++++.+.+.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~ 75 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHW--QVE-IAHNGFDAGIKLS-----TFEPAIMTLDLSMPKLDGLDVIRSLRQN 75 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HTCCSEEEEESCBTTBCHHHHHHHHHTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 467899999999999999999988765 343 5667777776654 457999999975432 34555555543
No 367
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=93.33 E-value=0.68 Score=28.94 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=48.1
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ..++|+|++|...+. -.++++.+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvllD~~~p~~~g~~~~~~l~ 69 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGY--EVI-EAENGQIALEKLS-----EFTPDLIVLXIMMPVMDGFTVLKKLQ 69 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHT-----TBCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeccCCCCcHHHHHHHHH
Confidence 4799999999999999999988875 343 5678888777663 567999999975433 244555554
No 368
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=93.23 E-value=0.89 Score=28.22 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=48.3
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~~ 88 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ..++|+|++|...+.. .++++.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlii~D~~~p~~~g~~~~~~lr~ 70 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGY--EVH-CAHDGNEAVEMVE-----ELQPDLILLDIMLPNKDGVEVCREVRK 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TTCCSEEEEETTSTTTHHHHHHHHHHT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCE--EEE-EeCCHHHHHHHHh-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999999999999999988875 343 4677877776664 4679999999765432 344555443
No 369
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=93.18 E-value=1 Score=28.79 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=50.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
...+|..+|-++......++.++..|... .-....+..+.+..+. ...+|+|++|...+. ..++++.+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHC-QLEFVDNGAKALYQVQ-----QAKYDLIILDIGLPIANGFEVMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCE-EEEEESSHHHHHHHHT-----TCCCSEEEECTTCGGGCHHHHHHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCe-eEEEECCHHHHHHHhh-----cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 35689999999999999999999987642 2345567777776663 567999999975432 3445555554
No 370
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=93.11 E-value=1.1 Score=29.04 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=51.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
..+|..+|-++......+..+...|. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+...
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dliild~~l~~~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCc--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999999998776 354 5667777776542 45799999997543 23445555554433
Q ss_pred CCeEEEE
Q 031568 92 VGGIAVY 98 (157)
Q Consensus 92 ~gG~iv~ 98 (157)
.--++++
T Consensus 75 ~~pii~l 81 (155)
T 1qkk_A 75 DLPMILV 81 (155)
T ss_dssp TSCEEEE
T ss_pred CCCEEEE
Confidence 3334444
No 371
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=93.11 E-value=0.18 Score=39.89 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=52.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-----------------HHHHHHHhhcCCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-----------------LSVLDQLLKYSENE 64 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-----------------~~~l~~~~~~~~~~ 64 (157)
|+.++.+++.. ++++++++.+++..+.+++ .|.+.-+.....|. .+.+.++. ..
T Consensus 242 G~~avqlak~~-Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t----~g 312 (456)
T 3krt_A 242 GSYATQFALAG-GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELT----GG 312 (456)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHHc-CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHh----CC
Confidence 44555566554 7899999999998887755 45432121111111 13333332 13
Q ss_pred CceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEe
Q 031568 65 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 65 ~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
..+|+||-... ...++.+.+.|+++|.++.-
T Consensus 313 ~g~Dvvid~~G----~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 313 EDIDIVFEHPG----RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp CCEEEEEECSC----HHHHHHHHHHEEEEEEEEES
T ss_pred CCCcEEEEcCC----chhHHHHHHHhhCCcEEEEE
Confidence 57998875433 25688889999999999874
No 372
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=93.10 E-value=0.22 Score=39.15 Aligned_cols=85 Identities=14% Similarity=-0.003 Sum_probs=52.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH------------------HHHHHHHhhcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA------------------LSVLDQLLKYSEN 63 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~------------------~~~l~~~~~~~~~ 63 (157)
|+.++.+++. -++++++++.+++..+.+++ .|...-+.....+. .+.+....
T Consensus 234 G~~a~qla~~-~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----- 303 (447)
T 4a0s_A 234 GSYAIQFVKN-GGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKA----- 303 (447)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhHHHHHHHHHh-----
Confidence 4455556655 47899999999998887753 56542222111110 12222221
Q ss_pred CCceeEEEEcCCCcccHHHHHHHHhcccCCeEEEEec
Q 031568 64 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 64 ~~~fD~I~iD~~~~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
...+|+||-.... ..++.+.+.|+++|.++.-.
T Consensus 304 g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 304 GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 3469999865442 46788889999999998743
No 373
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=93.09 E-value=1.1 Score=28.98 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=51.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL 90 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L 90 (157)
..+|..+|-++...+..+..++. .|. .+.....+..+.+..+. ...+|+|++|...+ ...++++.+.+.-
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 77 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYR-----ETTPDIVVMDLTLPGPGGIEATRHIRQWD 77 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHH-----TTCCSEEEECSCCSSSCHHHHHHHHHHHC
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 56899999999999999998876 443 23335677777776664 45799999997543 2345566655443
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
..--++++
T Consensus 78 ~~~~ii~l 85 (153)
T 3cz5_A 78 GAARILIF 85 (153)
T ss_dssp TTCCEEEE
T ss_pred CCCeEEEE
Confidence 22334444
No 374
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=92.82 E-value=1.3 Score=28.88 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=49.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
...+|..+|-++......++.++..|. .+ ....+..+.+..+. ..++|+|++|...+ ...++++.+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGY--QT-EHVRNGREAVRFLS-----LTRPDLIISDVLMPEMDGYALCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHT-----TCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 467999999999999999999998775 34 34567777777663 56799999997543 23445555544
No 375
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=92.80 E-value=1.2 Score=28.39 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=51.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCccc--HHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY--CNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~--~~~~~~~~~~L~ 91 (157)
..+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|. .+.. .++++.+.+...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~ 74 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGF--NVI-WAKNEQEAFTFLR-----REKIDLVFVDV-FEGEESLNLIRRIREEFP 74 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTC--EEE-EESSHHHHHHHHT-----TSCCSEEEEEC-TTTHHHHHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEeC-CCCCcHHHHHHHHHHHCC
Confidence 46899999999999999999988776 454 5677777776663 46799999997 5432 234444444322
Q ss_pred CCeEEEE
Q 031568 92 VGGIAVY 98 (157)
Q Consensus 92 ~gG~iv~ 98 (157)
.--+|++
T Consensus 75 ~~pii~l 81 (142)
T 2qxy_A 75 DTKVAVL 81 (142)
T ss_dssp TCEEEEE
T ss_pred CCCEEEE
Confidence 2334444
No 376
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.80 E-value=0.52 Score=30.81 Aligned_cols=73 Identities=4% Similarity=-0.049 Sum_probs=46.9
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
.+.+|+.+|.+++.++.+++ . .+.++.||+.+ .+.... -...|.|++-.+....-...-...+.+
T Consensus 29 ~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~-----i~~ad~vi~~~~~~~~n~~~~~~a~~~ 95 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAH-----LECAKWLILTIPNGYEAGEIVASARAK 95 (140)
T ss_dssp TTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTT-----GGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcC-----cccCCEEEEECCChHHHHHHHHHHHHH
Confidence 47799999999998877654 2 35678898754 343321 257999998654332222223344667
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.|+..+++
T Consensus 96 ~~~~~iia 103 (140)
T 3fwz_A 96 NPDIEIIA 103 (140)
T ss_dssp CSSSEEEE
T ss_pred CCCCeEEE
Confidence 78877776
No 377
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=92.78 E-value=0.86 Score=36.47 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=51.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHH---cCC---------CCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKK---AGV---------DHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~---~~~---------~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||++++..++. .+-+|+++|++++.++..++.... .|+ ..++++ ..|..+.+. ..|
T Consensus 19 vG~~lA~~la~-~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~~----------~aD 86 (478)
T 2y0c_A 19 VGLVTGACLAD-IGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAVA----------HGD 86 (478)
T ss_dssp HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHHH----------HCS
T ss_pred HHHHHHHHHHh-CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHhh----------cCC
Confidence 46666665554 366899999999988877653100 010 113433 334433332 479
Q ss_pred EEEEcCCC----------cccHHHHHHHHhcccCCeEEEEe
Q 031568 69 YAFVDADK----------DNYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 69 ~I~iD~~~----------~~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+||+--+. ......++.+.+.+++|.+++..
T Consensus 87 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ 127 (478)
T 2y0c_A 87 VQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK 127 (478)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred EEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 99986433 23455666777889988877653
No 378
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=92.73 E-value=1.1 Score=27.91 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=49.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
..+|..+|-++...+..++.++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.++++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS-----TRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45899999999999999999998875 343 4567777776654 35799999997533 234556666554
No 379
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=92.70 E-value=0.049 Score=40.94 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=51.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+.. +++|++++.+++..+.+++ .|.+ .+ +..+-.+.+..+ ..+.+|+||-... .+
T Consensus 160 G~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~v--i~~~~~~~~~~~-----~~~~~d~v~d~~g----~~ 222 (324)
T 3nx4_A 160 GSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGAN-RI--LSRDEFAESRPL-----EKQLWAGAIDTVG----DK 222 (324)
T ss_dssp HHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCS-EE--EEGGGSSCCCSS-----CCCCEEEEEESSC----HH
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC-EE--EecCCHHHHHhh-----cCCCccEEEECCC----cH
Confidence 44555566654 6699999999999888865 4543 22 211111111111 1357998764332 23
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 223 ~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 223 VLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp HHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 788899999999999874
No 380
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=92.65 E-value=1.1 Score=27.97 Aligned_cols=73 Identities=16% Similarity=0.065 Sum_probs=48.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK 91 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~ 91 (157)
.+|..+|-++...+..++.+... |. .+.....+..+.+..+. ..++|+|++|...+. -.+.++.+.+...
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~~~ 75 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDM--EVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGFE 75 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999988765 32 22224567777776553 346999999975432 3445565554323
Q ss_pred CCe
Q 031568 92 VGG 94 (157)
Q Consensus 92 ~gG 94 (157)
+..
T Consensus 76 ~~~ 78 (130)
T 1dz3_A 76 HQP 78 (130)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 381
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=92.63 E-value=1.2 Score=28.22 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
...+|..+|-++...+..++.++..|+ ++. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF--HII-SADSGGQCIDLLK-----KGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe--EEE-EeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 467899999999999999999998875 343 5567777776654 45799999997543 23455665554
No 382
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=92.57 E-value=0.23 Score=37.68 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+.. +++|++++.+++..+.+++ .|.+ .+ + .+.. .+ ...+|+||-..... .
T Consensus 189 G~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~v--~-~~~~----~~------~~~~D~vid~~g~~---~ 246 (348)
T 3two_A 189 GSMAVKYAVAM-GAEVSVFARNEHKKQDALS----MGVK-HF--Y-TDPK----QC------KEELDFIISTIPTH---Y 246 (348)
T ss_dssp HHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----TTCS-EE--E-SSGG----GC------CSCEEEEEECCCSC---C
T ss_pred HHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----cCCC-ee--c-CCHH----HH------hcCCCEEEECCCcH---H
Confidence 55555666654 6799999999999887754 5653 22 2 3332 11 23799998544432 2
Q ss_pred HHHHHHhcccCCeEEEEec
Q 031568 82 YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+.|+++|.++.-.
T Consensus 247 ~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 247 DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CHHHHHTTEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 4677889999999999743
No 383
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=92.42 E-value=0.46 Score=36.15 Aligned_cols=90 Identities=10% Similarity=0.016 Sum_probs=48.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHHh--hcCCCCCceeEEEEcCCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLL--KYSENEGSFDYAFVDADK 76 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~---~d~~~~l~~~~--~~~~~~~~fD~I~iD~~~ 76 (157)
|+.++.+|+.. +++++++..+++..+..++.+++.|.+.-+.... .+..+.+.++. . ...+|+||-...
T Consensus 181 G~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~----~~g~Dvvid~~G- 254 (364)
T 1gu7_A 181 GKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQS----GGEAKLALNCVG- 254 (364)
T ss_dssp HHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHH----TCCEEEEEESSC-
T ss_pred HHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhcc----CCCceEEEECCC-
Confidence 44455566553 6788888766554222233344567542121111 23333443331 1 346999985433
Q ss_pred cccHHHHHHHHhcccCCeEEEEec
Q 031568 77 DNYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 77 ~~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..... .+.+.|+++|.++.-.
T Consensus 255 --~~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 255 --GKSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp --HHHHH-HHHHTSCTTCEEEECC
T ss_pred --chhHH-HHHHHhccCCEEEEec
Confidence 22333 6779999999998743
No 384
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=92.26 E-value=1.5 Score=28.31 Aligned_cols=76 Identities=9% Similarity=0.018 Sum_probs=51.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
-.+|..+|-++...+..++.++..+.. ..-....+..+.+..+. ...+|+|++|...+ ...++++.+.+. .
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~~~dlii~D~~l~~~~g~~~~~~l~~~-~ 92 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDV-ESVLQAKNGQEAIQLLE-----KESVDIAILDVEMPVKTGLEVLEWIRSE-K 92 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHT-----TSCCSEEEECSSCSSSCHHHHHHHHHHT-T
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHhh-----ccCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence 458999999999999999999876521 22334567777776663 56799999997533 234556665544 3
Q ss_pred CCeEE
Q 031568 92 VGGIA 96 (157)
Q Consensus 92 ~gG~i 96 (157)
++..+
T Consensus 93 ~~~~i 97 (150)
T 4e7p_A 93 LETKV 97 (150)
T ss_dssp CSCEE
T ss_pred CCCeE
Confidence 44333
No 385
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=92.26 E-value=0.21 Score=37.97 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=46.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++...+.+|++++ +++..+.++ .|.+.-+. ...|..+.+.++. .+.+|+||-.....
T Consensus 156 G~~a~qla~~~g~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~~-----~~g~Dvv~d~~g~~---- 219 (349)
T 4a27_A 156 GQAVAQLCSTVPNVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRIS-----AEGVDIVLDCLCGD---- 219 (349)
T ss_dssp HHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHHC-----TTCEEEEEEECC------
T ss_pred HHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHhc-----CCCceEEEECCCch----
Confidence 44444555555578999988 555544443 45432233 3344555555442 45799998544322
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 220 ~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 220 NTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp -----CTTEEEEEEEEEE
T ss_pred hHHHHHHHhhcCCEEEEE
Confidence 246788999999999863
No 386
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=92.16 E-value=1.4 Score=27.93 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=49.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
+..+|..+|-++......+..++..|....+ ....+..+.+..+.........+|+|++|...+ .-.++++.+.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEI-QSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEE-EEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeee-eecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4568999999999999999999887753123 345677776665531000016799999997543 23455666555
No 387
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=92.06 E-value=0.26 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=37.4
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~ 75 (157)
..|.++|+++.+++..+.|+.. ..++.+|+.++... +. ...+|+|+.+++
T Consensus 27 ~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~~~D~l~~gpP 77 (343)
T 1g55_A 27 QVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD-----RLSFDMILMSPP 77 (343)
T ss_dssp EEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH-----HHCCSEEEECCC
T ss_pred eEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC-----cCCcCEEEEcCC
Confidence 4699999999999999998742 34678888876432 21 126999999876
No 388
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=91.99 E-value=0.65 Score=34.37 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=50.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|..++.+++.. +.+|++++.+++..+.+++ .|.+ . ++..+- .+....+ +.+|+||- ...
T Consensus 139 G~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~ga~-~--~~~~~~~~~~~~~~-------~~~d~vid-~g~---- 198 (302)
T 1iz0_A 139 GTAAVQVARAM-GLRVLAAASRPEKLALPLA----LGAE-E--AATYAEVPERAKAW-------GGLDLVLE-VRG---- 198 (302)
T ss_dssp HHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----TTCS-E--EEEGGGHHHHHHHT-------TSEEEEEE-CSC----
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----cCCC-E--EEECCcchhHHHHh-------cCceEEEE-CCH----
Confidence 44455566554 6799999999998887754 4543 2 222221 2332221 46999987 643
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 199 ~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 199 KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp TTHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHhhccCCEEEEE
Confidence 3567888999999999863
No 389
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=91.97 E-value=0.15 Score=39.33 Aligned_cols=48 Identities=6% Similarity=0.133 Sum_probs=37.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 53 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~ 53 (157)
|.=|..|+......+|++||+|+..+...++.+ . .++++++++|+.++
T Consensus 70 G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 70 GIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW 117 (353)
T ss_dssp CHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred CHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence 455666665444678999999999999998876 2 35899999999876
No 390
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=91.93 E-value=0.17 Score=38.70 Aligned_cols=83 Identities=19% Similarity=0.091 Sum_probs=51.1
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|.+ . ++..+-. ++...+ .+.+|+||-..... ..
T Consensus 192 G~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----lGa~-~--v~~~~~~~~~~~~~------~~~~D~vid~~g~~-~~ 256 (360)
T 1piw_A 192 GSMGTLISKAM-GAETYVISRSSRKREDAMK----MGAD-H--YIATLEEGDWGEKY------FDTFDLIVVCASSL-TD 256 (360)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----HTCS-E--EEEGGGTSCHHHHS------CSCEEEEEECCSCS-TT
T ss_pred HHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----cCCC-E--EEcCcCchHHHHHh------hcCCCEEEECCCCC-cH
Confidence 45555566654 6689999999999888765 4543 2 2322111 233333 24799998554320 01
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 257 ~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 257 IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CCTTTGGGGEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEe
Confidence 2356678899999999864
No 391
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=91.89 E-value=1.8 Score=29.96 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--------CCCCCceeEEEEcCCCcc--cHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--------SENEGSFDYAFVDADKDN--YCNY 82 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--------~~~~~~fD~I~iD~~~~~--~~~~ 82 (157)
.+.+|..||-++......++.++..|.. .+ ....+..+.+..+... ......||+|++|...+. -.++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~-~v-~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVS-EV-EQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCS-EE-EEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCC-ee-eeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 3569999999999999999999998763 23 3456776666554310 000137999999975432 3445
Q ss_pred HHHHHh
Q 031568 83 HERLMK 88 (157)
Q Consensus 83 ~~~~~~ 88 (157)
++.+.+
T Consensus 138 ~~~lr~ 143 (206)
T 3mm4_A 138 TREIRK 143 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 392
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=91.89 E-value=1.4 Score=34.87 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=52.0
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||.+++..++. .+-+|+++|++++.++..++.. ++.-...++++ ..|..+.+ ...|
T Consensus 13 vG~~lA~~La~-~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~----------~~aD 80 (450)
T 3gg2_A 13 VGLVSATCFAE-LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV----------PEAD 80 (450)
T ss_dssp HHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG----------GGCS
T ss_pred HHHHHHHHHHh-cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH----------hcCC
Confidence 45555554444 3679999999999888766521 00000123443 24444432 2579
Q ss_pred EEEEcCCCc----------ccHHHHHHHHhcccCCeEEEEe
Q 031568 69 YAFVDADKD----------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 69 ~I~iD~~~~----------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+||+-.+.+ .....++.+.+.+++|.+++..
T Consensus 81 vViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ 121 (450)
T 3gg2_A 81 IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK 121 (450)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred EEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe
Confidence 999865433 3456677777888888777664
No 393
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=91.82 E-value=1.6 Score=27.63 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=48.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
...+|..+|-++......++.++. .|. .+-....+..+.+..+. ...+|+|++|...+ ...++++.+.+
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPY--AKIKIAYNPFDAGDLLH-----TVKPDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTT--CEEEEECSHHHHHHHHH-----HTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCc--cEEEEECCHHHHHHHHH-----hcCCCEEEEecccCCCcHHHHHHHHHh
Confidence 467899999999999999999988 776 32345567777766554 35699999997543 23455666554
No 394
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=91.75 E-value=1.4 Score=26.99 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=47.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+|..+|-++......++.++..|. .+.....+..+.+..+. ..++|+|++|...+. -.++++.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~--~vv~~~~~~~~a~~~~~-----~~~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCc--EEEEEECCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 4789999999999999999987765 33335677777766553 346999999975432 2344555543
No 395
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=91.71 E-value=1.4 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=46.3
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ..++|+|++|...+. -.+.++.+.+
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~ 69 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGY--EID-TAENGEEALKKFF-----SGNYDLVILDIEMPGISGLEVAGEIRK 69 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHc
Confidence 688999999999999999988765 344 5567777766553 357999999975432 2344555544
No 396
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=91.59 E-value=1.7 Score=27.48 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=48.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~ 89 (157)
+..+|..+|-++...+..++.++..|. .+. ...+..+.+..+. ...+|+|+ .+.. ...++++.+.+.
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvi-~~~~-~g~~~~~~l~~~ 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGF--MAD-VTESLEDGEYLMD-----IRNYDLVM-VSDK-NALSFVSRIKEK 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HSCCSEEE-ECST-THHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHH-----cCCCCEEE-EcCc-cHHHHHHHHHhc
Confidence 577999999999999999999998775 454 5677777776554 35799999 3322 334566666555
No 397
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=91.49 E-value=1.7 Score=27.45 Aligned_cols=72 Identities=11% Similarity=0.254 Sum_probs=45.6
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+|..+|-++......+..++..|.. .+ ....+..+.+..+.........||+|++|...+. -.+.++.+.+
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~ 76 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIE-NI-ELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRR 76 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCc-eE-EEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence 46899999999999999999887653 23 3456666655443210000157999999975432 2345555544
No 398
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=91.48 E-value=3.1 Score=31.26 Aligned_cols=100 Identities=9% Similarity=0.001 Sum_probs=64.7
Q ss_pred cccHHHHHhhCC-CcEEEEEeCChhHHHHHHHHHHHcCC--CCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCC--
Q 031568 2 HLPTKLFMTGNK-ILQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDAD-- 75 (157)
Q Consensus 2 g~st~~l~~~~~-~~~v~~ve~~~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~-- 75 (157)
|+-|...-..+| +.+++=|| .|+.++..++.+...+. .++..++.+|+.+ ++..+....-.....=++++.+-
T Consensus 112 GlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~i~Egvl~ 190 (310)
T 2uyo_A 112 GLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLM 190 (310)
T ss_dssp TTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGG
T ss_pred CCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEEEEechHh
Confidence 777776555545 57899999 69999999999987553 4678899999874 33333211000122334444432
Q ss_pred ---CcccHHHHHHHHhcccCCeEEEEeccc
Q 031568 76 ---KDNYCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 76 ---~~~~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
......+++.+...+.||+.++++.+.
T Consensus 191 Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 191 YLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp GSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 122345677777888899999998754
No 399
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=91.44 E-value=2.3 Score=30.20 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~~~~~lr~ 91 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGF--EVY-TATNGAQALDRAR-----ETRPDAVILDVXMPGMDGFGVLRRLRA 91 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 357999999999999999999988775 354 5677877776654 357999999975432 3445555544
No 400
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=91.38 E-value=0.13 Score=33.55 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
..+|..||=++......++.++..|.. +.....+..+.+..+. ..+||+|++|-..+. -.+..+.+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~--v~~~a~~g~eAl~~~~-----~~~~DlvllDi~mP~~~G~el~~~lr 76 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHE--VAATASRMQEALDIAR-----KGQFDIAIIDVNLDGEPSYPVADILA 76 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCC--CCBCSCCHHHHHHHHH-----HCCSSEEEECSSSSSCCSHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCE--EEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 468999999999999999999999874 3223467777776554 467999999975432 234444444
No 401
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=91.31 E-value=0.75 Score=35.17 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=50.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +.+|++++.+++..+.+++ +.|.+ .+ +-..+ .+.+.++ .+.+|+||-......
T Consensus 200 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-~~~~~-~~~~~~~------~~~~D~vid~~g~~~--- 263 (366)
T 1yqd_A 200 GHVAVKFAKAF-GSKVTVISTSPSKKEEALK---NFGAD-SF-LVSRD-QEQMQAA------AGTLDGIIDTVSAVH--- 263 (366)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCGGGHHHHHH---TSCCS-EE-EETTC-HHHHHHT------TTCEEEEEECCSSCC---
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCc-eE-EeccC-HHHHHHh------hCCCCEEEECCCcHH---
Confidence 45555666654 6799999999988776653 44543 22 21222 2334433 347999986544321
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 264 ~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 264 PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CSHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 235667889999998864
No 402
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=91.30 E-value=1.8 Score=27.25 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=49.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
+..+|..+|-++......++.++..|. .+. ...+..+.+..+.. ...+|+|++|...+ ...++++.+.+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGI--DAV-GADGAEEARLYLHY----QKRIGLMITDLRMQPESGLDLIRTIRAS 77 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTC--CEE-EESSHHHHHHHHHH----CTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHHh----CCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence 467899999999999999999998876 343 35667666665532 33499999997543 234556665543
No 403
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=91.28 E-value=1.7 Score=27.05 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=52.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCc---ccHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKD---NYCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~---~~~~~~~~~~~ 88 (157)
...+|..+|-++...+..+..++..|. .+. ...+..+.+..+. .. .+|+|++|...+ ...++++.+.+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~d~~l~~~~~g~~~~~~l~~ 75 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGF--LVT-AVSSGAKAIEMLK-----SGAAIDGVVTDIRFCQPPDGWQVARVARE 75 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----TTCCCCEEEEESCCSSSSCHHHHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----cCCCCCEEEEeeeCCCCCCHHHHHHHHHh
Confidence 356899999999999999999988776 344 4677777776654 34 799999997543 23455555554
Q ss_pred cccCCeEEEE
Q 031568 89 LLKVGGIAVY 98 (157)
Q Consensus 89 ~L~~gG~iv~ 98 (157)
.-..--++++
T Consensus 76 ~~~~~~ii~~ 85 (132)
T 2rdm_A 76 IDPNMPIVYI 85 (132)
T ss_dssp HCTTCCEEEE
T ss_pred cCCCCCEEEE
Confidence 4322334444
No 404
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=91.28 E-value=1.8 Score=27.23 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=47.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGY--EVE-IAATAGEGLAKIE-----NEFFNLALFXIKLPDMEGTELLEKAHK 71 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 35799999999999999999988765 454 5677777776554 357999999975432 2445555543
No 405
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=91.26 E-value=0.35 Score=36.90 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=50.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+..++++|++++.+++..+.+++ .|.+.-+... .+..+.+.++. ....+|+||-... ...
T Consensus 199 G~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~~-~~~~~~v~~~~----~g~g~Dvvid~~G---~~~ 266 (359)
T 1h2b_A 199 GHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGADHVVDAR-RDPVKQVMELT----RGRGVNVAMDFVG---SQA 266 (359)
T ss_dssp HHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCSEEEETT-SCHHHHHHHHT----TTCCEEEEEESSC---CHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCEEEecc-chHHHHHHHHh----CCCCCcEEEECCC---Cch
Confidence 4455556665446799999999998887754 5643212111 11334444442 1236999985443 233
Q ss_pred --HHHHHHhcccCCeEEEEec
Q 031568 82 --YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 82 --~~~~~~~~L~~gG~iv~~~ 100 (157)
.++.+.+. ++|.++.-.
T Consensus 267 ~~~~~~~~~~--~~G~~v~~g 285 (359)
T 1h2b_A 267 TVDYTPYLLG--RMGRLIIVG 285 (359)
T ss_dssp HHHHGGGGEE--EEEEEEECC
T ss_pred HHHHHHHhhc--CCCEEEEEe
Confidence 56677776 899988743
No 406
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=91.15 E-value=1.9 Score=27.38 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=49.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc---ccHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---NYCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~---~~~~~~~~~~~~ 89 (157)
.+.+|..+|-++......++.++..|. .+. ...+..+.+..+.+ ...+|+|++|...+ ...++++.+.+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGY--TVE-IALTGEAAVEKVSG----GWYPDLILMDIELGEGMDGVQTALAIQQI 76 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHT----TCCCSEEEEESSCSSSCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EecChHHHHHHHhc----CCCCCEEEEeccCCCCCCHHHHHHHHHhC
Confidence 356899999999999999999998875 344 56677777766641 25799999997542 334556665543
No 407
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=91.14 E-value=0.39 Score=36.62 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=50.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+++.. +++|++++.+++..+.+++ +.|.+ .+ +-..+ .+.+.++ .+.+|+||--.....
T Consensus 193 G~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-i~~~~-~~~~~~~------~~g~D~vid~~g~~~--- 256 (357)
T 2cf5_A 193 GHMGVKIAKAM-GHHVTVISSSNKKREEALQ---DLGAD-DY-VIGSD-QAKMSEL------ADSLDYVIDTVPVHH--- 256 (357)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSTTHHHHHHT---TSCCS-CE-EETTC-HHHHHHS------TTTEEEEEECCCSCC---
T ss_pred HHHHHHHHHHC-CCeEEEEeCChHHHHHHHH---HcCCc-ee-ecccc-HHHHHHh------cCCCCEEEECCCChH---
Confidence 45555566654 6799999999988776653 45653 22 11223 2333333 346999985443221
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 257 ~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 257 ALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp CSHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 245677899999999874
No 408
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=90.96 E-value=2.7 Score=33.37 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=51.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||+.++..++. .+-+|+++|++++.++..++.. ++.-...++++ ..|..+.+ ..-|
T Consensus 19 vG~~~A~~La~-~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~----------~~aD 86 (446)
T 4a7p_A 19 VGLVSGACFSD-FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV----------KDAD 86 (446)
T ss_dssp HHHHHHHHHHH-TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH----------TTCS
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH----------hcCC
Confidence 46666665554 3779999999999988765420 00000123433 34554433 2478
Q ss_pred EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 031568 69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+||+--+.+ ......+.+.+.|++|.++|..
T Consensus 87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ 128 (446)
T 4a7p_A 87 AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK 128 (446)
T ss_dssp EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC
T ss_pred EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 998863221 2455666777889988887764
No 409
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=90.92 E-value=0.31 Score=37.24 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=50.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCCh---hHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN 78 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~ 78 (157)
|+.++.+++.. +++|++++.++ +..+.+++ .|.+ .+. ..+..+.+.+. .+.+|+||-.....
T Consensus 193 G~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~~~d~vid~~g~~- 257 (366)
T 2cdc_A 193 GVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VGKFDVIIDATGAD- 257 (366)
T ss_dssp HHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HCCEEEEEECCCCC-
T ss_pred HHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CCCCCEEEECCCCh-
Confidence 44455566554 56999999998 77766654 3542 231 11222333321 24699998665432
Q ss_pred cHHHH-HHHHhcccCCeEEEEe
Q 031568 79 YCNYH-ERLMKLLKVGGIAVYD 99 (157)
Q Consensus 79 ~~~~~-~~~~~~L~~gG~iv~~ 99 (157)
..+ +.+.+.|+++|.++.-
T Consensus 258 --~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 258 --VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp --THHHHHHGGGEEEEEEEEEC
T ss_pred --HHHHHHHHHHHhcCCEEEEE
Confidence 245 7888999999999864
No 410
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=90.76 E-value=2.1 Score=27.14 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=49.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGY--EVR-RAASGEEALQQIY-----KNLPDALICDVLLPGIDGYTLCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 56899999999999999999988775 343 5567777776654 457999999975432 3445555543
No 411
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=90.74 E-value=2 Score=26.98 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=51.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L 90 (157)
...+|..+|-++...+..++.++..+. .+ ....+..+.+..+. ..++|+|++|...+ ...++++.+.+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~--~v-~~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~- 76 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFP--EV-WSAGDGEEGERLFG-----LHAPDVIITDIRMPKLGGLEMLDRIKAG- 76 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCS--CE-EEESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHT-
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCc--EE-EEECCHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 356899999999999999999987543 23 35567777766654 35799999997533 234556555543
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.+...+++
T Consensus 77 ~~~~~ii~ 84 (137)
T 3hdg_A 77 GAKPYVIV 84 (137)
T ss_dssp TCCCEEEE
T ss_pred CCCCcEEE
Confidence 34444443
No 412
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=90.65 E-value=2 Score=26.83 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=49.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--CCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--SENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
+.+|..+|-++...+..++.++..|....+ ....+..+.+..+... ......+|+|++|...+ ...++++.+.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEV-VTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEE-EEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceE-EEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcC
Confidence 568999999999999999999988764233 3456777777665310 00015799999997543 234556655543
No 413
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=90.56 E-value=1.5 Score=32.42 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=47.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
...+|..+|=++......+..++..|. .+.....|..+.+..+. ..+||+|++|-..+
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~--~v~~~a~~g~eAl~~~~-----~~~~dlvl~D~~MP 216 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGH--DVTDIAATRGEALEAVT-----RRTPGLVLADIQLA 216 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HCCCSEEEEESCCT
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCc--eEEEEeCCHHHHHHHHH-----hCCCCEEEEcCCCC
Confidence 467899999999999999999999886 35436788888887764 45799999997544
No 414
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=90.56 E-value=1.1 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+.-+|..+|-++......++.++.. |. .+-....+..+.+..+. .. .+|+|++|...+. -.++++.+..
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~~~~dlvilD~~l~~~~g~~~~~~lr~ 84 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDF--KVVAQAANGQEALDKLA-----AQPNVDLILLDIEMPVMDGMEFLRHAKL 84 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTE--EEEEEESSHHHHHHHHH-----HCTTCCEEEECTTSCCCTTCHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEECCHHHHHHHHh-----cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5678999999999999999988765 32 22235677777776654 34 7999999975332 2344555443
No 415
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.53 E-value=2.2 Score=27.06 Aligned_cols=67 Identities=4% Similarity=-0.051 Sum_probs=46.2
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.++++.+.+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~-----~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPY--DIF-HVETGRDAIQFIE-----RSKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSS--EEE-EESSHHHHHHHHH-----HHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCc--eEE-EeCCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4799999999999999888876654 343 5567777766553 34699999997533 234455555443
No 416
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=90.51 E-value=0.75 Score=35.22 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=48.3
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+++.. +++|++++ +++..+.++ +.|.+.-+.....+..+.+.. ...+|+||-..... ..
T Consensus 197 G~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~----~lGa~~v~~~~~~~~~~~~~~-------~~g~D~vid~~g~~--~~ 261 (375)
T 2vn8_A 197 GTFAIQVMKAW-DAHVTAVC-SQDASELVR----KLGADDVIDYKSGSVEEQLKS-------LKPFDFILDNVGGS--TE 261 (375)
T ss_dssp HHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HTTCSEEEETTSSCHHHHHHT-------SCCBSEEEESSCTT--HH
T ss_pred HHHHHHHHHhC-CCEEEEEe-ChHHHHHHH----HcCCCEEEECCchHHHHHHhh-------cCCCCEEEECCCCh--hh
Confidence 44555566654 67999998 667666553 456531121112233333321 24699998554321 23
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.++.+.+.|+++|.++.-
T Consensus 262 ~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 262 TWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp HHGGGGBCSSSCCEEEES
T ss_pred hhHHHHHhhcCCcEEEEe
Confidence 457778899999999863
No 417
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=90.50 E-value=0.22 Score=38.79 Aligned_cols=72 Identities=7% Similarity=0.134 Sum_probs=44.5
Q ss_pred cHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHH
Q 031568 4 PTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH 83 (157)
Q Consensus 4 st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~ 83 (157)
.|-.++.. +++|++||..+-. . .+.. .++|+++.+|+.++.+ ..++||+|++|.... .....
T Consensus 225 WT~~l~~r--g~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~-------~~~~~D~vvsDm~~~-p~~~~ 286 (375)
T 4auk_A 225 WTYQLVKR--NMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRP-------TRSNISWMVCDMVEK-PAKVA 286 (375)
T ss_dssp HHHHHHHT--TCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCC-------CSSCEEEEEECCSSC-HHHHH
T ss_pred HHHHHHHC--CCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccC-------CCCCcCEEEEcCCCC-hHHhH
Confidence 45555543 7899999976422 1 1111 2589999999987643 246799999998642 33444
Q ss_pred HHHHhcccCC
Q 031568 84 ERLMKLLKVG 93 (157)
Q Consensus 84 ~~~~~~L~~g 93 (157)
+...++|..+
T Consensus 287 ~l~~~wl~~~ 296 (375)
T 4auk_A 287 ALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 4444444443
No 418
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=90.31 E-value=1.6 Score=27.70 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=47.2
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGY--RPI-TAFSGEECLEALN-----ATPPDLVLLDIMMEPMDGWETLERIKT 71 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCc--eEE-EeCCHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 5799999999999999999988765 343 4567777766553 356999999975432 2445555543
No 419
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=90.28 E-value=2.7 Score=27.65 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=51.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L 90 (157)
...+|..+|-++......++.++..+.. .+-....+..+.+..+. ...+|+|++|...+. -.++++.+.+.
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l~~~~g~~l~~~lr~~- 96 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI-----ELKPDVITMDIEMPNLNGIEALKLIMKK- 96 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHH-
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc-----cCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 3568999999999999999999876421 22224677777776654 346999999975332 34455555432
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.+--++++
T Consensus 97 ~~~~ii~~ 104 (164)
T 3t8y_A 97 APTRVIMV 104 (164)
T ss_dssp SCCEEEEE
T ss_pred CCceEEEE
Confidence 23344444
No 420
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=90.11 E-value=2 Score=25.84 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=47.3
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
.+|..+|-++...+..++.++..|. ++. ...+..+.+..+. ...+|+|++|...+ ...+.++.+.+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~--~v~-~~~~~~~~~~~l~-----~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGF--KVI-WLVDGSTALDQLD-----LLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCc--EEE-EecCHHHHHHHHH-----hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 5789999999999999999998776 454 4566776666553 34699999997543 234455555543
No 421
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=90.10 E-value=0.56 Score=36.36 Aligned_cols=80 Identities=10% Similarity=0.107 Sum_probs=49.3
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCCCcc---------------
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDADKDN--------------- 78 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~~~~--------------- 78 (157)
..+.++|+++.+++..+.|+. ...++.+|+.+.... +.........+|+|+.++++..
T Consensus 25 ~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~ 98 (376)
T 3g7u_A 25 DVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQ 98 (376)
T ss_dssp EEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCCCTTC-------CHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEEecCCCCCcccccCCCCCCchHH
Confidence 346799999999999988863 456788888765321 1000001357999999876432
Q ss_pred -cHHHHHHHHhcccCCeEEEEeccc
Q 031568 79 -YCNYHERLMKLLKVGGIAVYDNTL 102 (157)
Q Consensus 79 -~~~~~~~~~~~L~~gG~iv~~~~~ 102 (157)
+.+++ .+.+.++|. +++++|+-
T Consensus 99 L~~~~~-~~v~~~~P~-~~v~ENV~ 121 (376)
T 3g7u_A 99 LYMHFY-RLVSELQPL-FFLAENVP 121 (376)
T ss_dssp HHHHHH-HHHHHHCCS-EEEEEECT
T ss_pred HHHHHH-HHHHHhCCC-EEEEecch
Confidence 11222 334567775 56677763
No 422
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=90.04 E-value=2.5 Score=26.93 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=48.7
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++...+..+..+...+..-.+.....+..+.+..+. ...+|+|++|...+. -.++++.+.+. .|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~l~~~l~~~-~~ 76 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-----KHPPNVLLTDVRMPRMDGIELVDNILKL-YP 76 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-----TSCCSEEEEESCCSSSCHHHHHHHHHHH-CT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhh-CC
Confidence 47899999999988888777532222134436777777776653 457999999975432 34455555443 34
Q ss_pred CeEEE
Q 031568 93 GGIAV 97 (157)
Q Consensus 93 gG~iv 97 (157)
+..++
T Consensus 77 ~~~ii 81 (141)
T 3cu5_A 77 DCSVI 81 (141)
T ss_dssp TCEEE
T ss_pred CCcEE
Confidence 44333
No 423
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=90.00 E-value=2.3 Score=26.36 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=51.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
+.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.++++.+.+. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~ 73 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGDL-K 73 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHHT-T
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEECCCCCCCHHHHHHHHHhc-C
Confidence 56899999999999999999988765 343 4567777766553 45799999997543 234455555443 3
Q ss_pred CC-eEEEE
Q 031568 92 VG-GIAVY 98 (157)
Q Consensus 92 ~g-G~iv~ 98 (157)
++ -++++
T Consensus 74 ~~~~ii~~ 81 (126)
T 1dbw_A 74 INIPSIVI 81 (126)
T ss_dssp CCCCEEEE
T ss_pred CCCCEEEE
Confidence 44 34444
No 424
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=89.89 E-value=0.25 Score=33.44 Aligned_cols=62 Identities=5% Similarity=0.068 Sum_probs=38.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEE-EcCCCcccHHHHHHHHhccc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF-VDADKDNYCNYHERLMKLLK 91 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~-iD~~~~~~~~~~~~~~~~L~ 91 (157)
.+..|+++|++|.+++ ++++|+.+-...+ -+.||+|+ +.++.+-.+.+++.+ +.+
T Consensus 58 ~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~~~DLIYsirPP~El~~~i~~lA-~~v- 113 (153)
T 2k4m_A 58 SKVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YRGAALIYSIRPPAEIHSSLMRVA-DAV- 113 (153)
T ss_dssp SCCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HTTEEEEEEESCCTTTHHHHHHHH-HHH-
T ss_pred CCCeEEEEECCccccc----------------eEEccCCCCcccc------cCCcCEEEEcCCCHHHHHHHHHHH-HHc-
Confidence 5788999999998876 7888887633222 24799995 555544333344433 332
Q ss_pred CCeEEEEe
Q 031568 92 VGGIAVYD 99 (157)
Q Consensus 92 ~gG~iv~~ 99 (157)
|.-+++.
T Consensus 114 -~adliI~ 120 (153)
T 2k4m_A 114 -GARLIIK 120 (153)
T ss_dssp -TCEEEEE
T ss_pred -CCCEEEE
Confidence 4444443
No 425
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=89.84 E-value=3.4 Score=28.16 Aligned_cols=77 Identities=8% Similarity=0.006 Sum_probs=52.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~ 91 (157)
..+|..+|-++......+..+...|. .+.....+..+.+..+. ...+|+|++|...+. ..++++.+... .
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~~~-----~~~~dlvi~D~~~p~~~g~~~~~~l~~~-~ 84 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGY--EIVGEAGDGQEAVELAE-----LHKPDLVIMDVKMPRRDGIDAASEIASK-R 84 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHT-T
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-----hcCCCEEEEeCCCCCCChHHHHHHHHhc-C
Confidence 46899999999999999999988765 34445677777776553 346999999975432 34455555443 3
Q ss_pred CCeEEEE
Q 031568 92 VGGIAVY 98 (157)
Q Consensus 92 ~gG~iv~ 98 (157)
+.-+|++
T Consensus 85 ~~pii~l 91 (205)
T 1s8n_A 85 IAPIVVL 91 (205)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 3455554
No 426
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=89.81 E-value=6.5 Score=31.32 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=50.3
Q ss_pred CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568 1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 67 (157)
Q Consensus 1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f 67 (157)
||.+++..++ ..++.+|+++|++++.++..++. +.+. ...++++ ..|..+.+. ..
T Consensus 20 vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~-~~~~l~~-t~~~~~~~~----------~a 87 (481)
T 2o3j_A 20 VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA-RGRNLFF-SSDIPKAIA----------EA 87 (481)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHHH----------HC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHhh----------cC
Confidence 5666666444 43578999999999988776531 1110 0112332 334433332 47
Q ss_pred eEEEEcCCCc---------------ccHHHHHHHHhcccCCeEEEE
Q 031568 68 DYAFVDADKD---------------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 68 D~I~iD~~~~---------------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
|+||+..+.+ ......+.+.+.+++|.+++.
T Consensus 88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~ 133 (481)
T 2o3j_A 88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE 133 (481)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9999864221 134556667788888877765
No 427
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=89.68 E-value=1.6 Score=27.95 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAG-VDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+..+|..+|-++......++.++..| + .+.. ..+..+.+..+.+ . ..+|+|++|...+. ..++++.+.+
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~~-~~~~~~~~~~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 91 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRY--RVTR-TVGRAAQIVQRTD----GLDAFDILMIDGAALDTAELAAIEKLSR 91 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSC--EEEE-ECCCHHHHTTCHH----HHTTCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCe--EEEE-eCCHHHHHHHHHh----cCCCCCEEEEeCCCCCccHHHHHHHHHH
Confidence 46799999999999999999999887 4 3433 4455545443321 2 57999999986543 2344554444
No 428
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=89.64 E-value=2.8 Score=26.93 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=49.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcC----CCCCceeEEEEcCCCc--ccHHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS----ENEGSFDYAFVDADKD--NYCNYHERLM 87 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~----~~~~~fD~I~iD~~~~--~~~~~~~~~~ 87 (157)
..+|..+|-++...+..++.++..|....+. ...+..+.+..+.... .....+|+|++|...+ .-.++++.+.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~-~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEII-AFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEE-EESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEE-EeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 4689999999999999999999988743343 4567777766552000 0035799999997433 2345566655
Q ss_pred h
Q 031568 88 K 88 (157)
Q Consensus 88 ~ 88 (157)
+
T Consensus 83 ~ 83 (152)
T 3heb_A 83 E 83 (152)
T ss_dssp H
T ss_pred h
Confidence 4
No 429
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=89.54 E-value=1.4 Score=28.25 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
...+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGH--KVL-CVNGAEQVLDAMA-----EEDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--C--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCC--eEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 457899999999999999999987765 343 4567777766553 457999999975432 234455443
No 430
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=89.50 E-value=2.5 Score=26.05 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=49.7
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++......+..++..|. .+. ...+..+.+..+. ..++|+|++|...+. ..++++.+.+. .+
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~~-~~ 74 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGY--QTF-QAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVI-DE 74 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCc--EEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence 5799999999999999999987665 343 5667777666553 346999999975432 24455555443 34
Q ss_pred CeEEE
Q 031568 93 GGIAV 97 (157)
Q Consensus 93 gG~iv 97 (157)
...++
T Consensus 75 ~~~ii 79 (124)
T 1srr_A 75 NIRVI 79 (124)
T ss_dssp TCEEE
T ss_pred CCCEE
Confidence 44333
No 431
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=89.48 E-value=2.7 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=50.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCC---C--CceeEEEEcCCCcc--cHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN---E--GSFDYAFVDADKDN--YCNYHER 85 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~---~--~~fD~I~iD~~~~~--~~~~~~~ 85 (157)
...+|..+|-++......++.++..|....+ ....+..+.+..+...... . ..+|+|++|...+. ..+.++.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPI-YRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCE-EEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceE-EEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 4568999999999999999999988764234 3456677776655310000 0 57999999975432 3445555
Q ss_pred HHh
Q 031568 86 LMK 88 (157)
Q Consensus 86 ~~~ 88 (157)
+.+
T Consensus 84 l~~ 86 (149)
T 1k66_A 84 IKQ 86 (149)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 432
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=89.47 E-value=2.7 Score=26.55 Aligned_cols=76 Identities=11% Similarity=0.232 Sum_probs=51.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.++++.+...-
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~l~~~~g~~l~~~l~~~~- 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI--SID-LAYNCEEAIGKIF-----SNKYDLIFLEIILSDGDGWTLCKKIRNVT- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HCCCSEEEEESEETTEEHHHHHHHHHTTC-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHccCC-
Confidence 56899999999999999999987665 353 5667777766553 35799999997433 2244555554432
Q ss_pred CCeEEEE
Q 031568 92 VGGIAVY 98 (157)
Q Consensus 92 ~gG~iv~ 98 (157)
.-.++++
T Consensus 75 ~~~ii~l 81 (136)
T 2qzj_A 75 TCPIVYM 81 (136)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
Confidence 3344444
No 433
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=89.32 E-value=0.65 Score=29.46 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=41.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAG-VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
...+|..+|-++...+..++.++..| + .+. ...+..+.+..+. ..++|+|++|..
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~D~~ 68 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIY--DVR-VSETDDFLKGPPA-----DTRPGIVILDLG 68 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSE--EEE-EECGGGGGGCCCT-----TCCCSEEEEEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCe--EEE-EeccHHHHHHHHh-----ccCCCEEEEeCC
Confidence 35689999999999999999999876 4 343 4556666554432 467999999964
No 434
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=89.17 E-value=2.9 Score=26.44 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
...+|..+|-++......+..++.. +. .+-....+..+.+..+. ...+|+|++|...+. ..++++.+.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~--~~v~~~~~~~~al~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~- 79 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQM--EIVGSFDDGLDVLKFLQ-----HNKVDAIFLDINIPSLDGVLLAQNISQ- 79 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCC--EEEEEESCHHHHHHHHH-----HCCCSEEEECSSCSSSCHHHHHHHHTT-
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHH-----hCCCCEEEEecCCCCCCHHHHHHHHHc-
Confidence 3568999999999999999999876 33 22224567777766554 356999999975432 3445555544
Q ss_pred ccCCe-EEEE
Q 031568 90 LKVGG-IAVY 98 (157)
Q Consensus 90 L~~gG-~iv~ 98 (157)
..+.. ++++
T Consensus 80 ~~~~~~ii~~ 89 (143)
T 2qv0_A 80 FAHKPFIVFI 89 (143)
T ss_dssp STTCCEEEEE
T ss_pred cCCCceEEEE
Confidence 34444 3444
No 435
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=89.17 E-value=0.37 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=27.1
Q ss_pred CceeEEEEcCCCc----ccHHHHH----------HHHhcccCCeEEEEecccC
Q 031568 65 GSFDYAFVDADKD----NYCNYHE----------RLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 65 ~~fD~I~iD~~~~----~~~~~~~----------~~~~~L~~gG~iv~~~~~~ 103 (157)
+.||+||++...+ .|++.-+ .++++|+|||.+++..-.+
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy 262 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY 262 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence 6899999997432 3444333 2346899999999976543
No 436
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=89.15 E-value=2.8 Score=26.21 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=47.4
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
+.+|..+|-++......+..+...|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGY--DVI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCc--EEE-EecCHHHHHHHHh-----hcCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 35899999999999999999988765 343 4566777666553 346999999975432 24455555443
No 437
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=89.15 E-value=5.4 Score=31.49 Aligned_cols=83 Identities=7% Similarity=0.169 Sum_probs=50.8
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||++++..++. +-+|+++|++++.++..++. +.+. ..++++ ..|..+.+ ..-|
T Consensus 47 mG~~lA~~La~--G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~--~~~l~~-ttd~~ea~----------~~aD 111 (432)
T 3pid_A 47 VGLSNGVLIAQ--NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK--PLNFRA-TTDKHDAY----------RNAD 111 (432)
T ss_dssp HHHHHHHHHHT--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEE-ESCHHHHH----------TTCS
T ss_pred HHHHHHHHHHc--CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc--cCCeEE-EcCHHHHH----------hCCC
Confidence 46666665544 78999999999998877652 1111 113433 34544433 2478
Q ss_pred EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEEe
Q 031568 69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~~ 99 (157)
+||+-.+.+ ......+.+.+ |++|.++|..
T Consensus 112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ 152 (432)
T 3pid_A 112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIK 152 (432)
T ss_dssp EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEEC
T ss_pred EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEe
Confidence 998864322 13445566677 8999888754
No 438
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=89.04 E-value=1.6 Score=26.86 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=45.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. ..+.++.+.+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~ 69 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGY--ETL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE 69 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 4789999999999999999988775 343 4567777665543 346999999975432 2345555544
No 439
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=89.02 E-value=4 Score=27.80 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. ..+.++.+.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 73 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAI 73 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EcCCHHHHHHhhh-----ccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 56899999999999999999987765 344 4567777776542 457999999975432 34455555443
No 440
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=88.97 E-value=4.3 Score=28.13 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=52.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.+.++.+.+.-.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~~~ 78 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDN 78 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 45899999999999999999988765 343 5667777776554 35799999997543 23445555544322
Q ss_pred CCeEEEE
Q 031568 92 VGGIAVY 98 (157)
Q Consensus 92 ~gG~iv~ 98 (157)
.--++++
T Consensus 79 ~~~ii~l 85 (233)
T 1ys7_A 79 DVPVCVL 85 (233)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
Confidence 2334444
No 441
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=88.94 E-value=0.065 Score=40.68 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=39.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL 54 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l 54 (157)
+|-.|+..++..-+.+.+++|+++..++.+++++++.+.. ...+.+|+.++.
T Consensus 261 ~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~ 312 (323)
T 1boo_A 261 GGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRIL 312 (323)
T ss_dssp CTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHH
Confidence 4667777777556899999999999999999999877653 455566666553
No 442
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=88.92 E-value=3.2 Score=26.64 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=49.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHhhcCCCC-CceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~l~~~~~~~~~~-~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
..+|..+|-++......+..++.. |. ..-....+..+.+..+. . ..+|+|++|...+ ...++++.+.+.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~--~~v~~~~~~~~a~~~l~-----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSG--MRVEGAETVSDALAFLE-----ADNTVDLILLDVNLPDAEAIDGLVRLKRF 75 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTT--EEEEEESSHHHHHHHHH-----TTCCCSEEEECC------CHHHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCc--eEEEEecCHHHHHHHHh-----ccCCCCEEEEeCCCCCCchHHHHHHHHHh
Confidence 357999999999999999999887 54 22345667777776664 4 6799999997533 234455555544
Q ss_pred ccCCeEEE
Q 031568 90 LKVGGIAV 97 (157)
Q Consensus 90 L~~gG~iv 97 (157)
.++..++
T Consensus 76 -~~~~~ii 82 (154)
T 2qsj_A 76 -DPSNAVA 82 (154)
T ss_dssp -CTTSEEE
T ss_pred -CCCCeEE
Confidence 3444443
No 443
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=88.78 E-value=4.3 Score=27.94 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=51.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+.++.+.+.-..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~ 74 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMF--TVD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGVN 74 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 4789999999999999999988765 353 5667777766553 357999999975432 34455555443222
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
--++++
T Consensus 75 ~~ii~l 80 (225)
T 1kgs_A 75 TPVLML 80 (225)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 334444
No 444
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=88.61 E-value=4.1 Score=29.16 Aligned_cols=67 Identities=12% Similarity=0.181 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
+.+|..+|-++......+..++..|. ++. ...+..+.+..+. ...||+|++|...+ .-.+..+.+.+
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~l~-----~~~~dlvl~D~~mp~~~G~~l~~~ir~ 197 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGY--QCK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQ 197 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTS--EEE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999998886 353 5567777766554 35699999996433 22445555544
No 445
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=88.58 E-value=3.2 Score=26.22 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
..+|..+|-++...+..++.++..|. .+. ...+..+.+..+.. ....+|+|++|...+ ...++++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~~---~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 74 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGN--EVL-TASSSTEGLRIFTE---NCNSIDVVITDMKMPKLSGMDILREIKKI 74 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHHH---TTTTCCEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCc--eEE-EeCCHHHHHHHHHh---CCCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 46899999999999999999998775 343 55677776665531 135799999997543 234556665544
No 446
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=88.53 E-value=0.083 Score=39.80 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHhhcCCCCCceeEEEEcCCCc
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLLKYSENEGSFDYAFVDADKD 77 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~----l~~~~~~~~~~~~fD~I~iD~~~~ 77 (157)
|+.++.+++.. +.+|++++.+++..+.+++ .|.+ . ++ |..+. +..+ ..+.+|+||-....
T Consensus 164 G~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----lGa~-~--v~--~~~~~~~~~~~~~-----~~~~~d~vid~~g~- 227 (330)
T 1tt7_A 164 GGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGAS-E--VI--SREDVYDGTLKAL-----SKQQWQGAVDPVGG- 227 (330)
T ss_dssp HHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCS-E--EE--EHHHHCSSCCCSS-----CCCCEEEEEESCCT-
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----cCCc-E--EE--ECCCchHHHHHHh-----hcCCccEEEECCcH-
Confidence 44455556543 5789999999888887764 4543 2 22 22111 1111 12469998754432
Q ss_pred ccHHHHHHHHhcccCCeEEEEec
Q 031568 78 NYCNYHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 78 ~~~~~~~~~~~~L~~gG~iv~~~ 100 (157)
..++.+.+.++++|.++.-.
T Consensus 228 ---~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 228 ---KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp ---HHHHHHHTTEEEEEEEEECC
T ss_pred ---HHHHHHHHhhcCCCEEEEEe
Confidence 36788899999999998743
No 447
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=87.75 E-value=3.3 Score=25.31 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=46.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
.+|..+|-++...+..++.++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+..+.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~~~~~~~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~ 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGY--TVS-VTASGAGLREIMQ-----NQSVDLILLDINLPDENGLMLTRALRE 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCC--eEE-EecCHHHHHHHHh-----cCCCCEEEEeCCCCCCChHHHHHHHHh
Confidence 4789999999999999999988765 343 4566666665443 356999999975432 2445555554
No 448
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=87.75 E-value=3.9 Score=26.22 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~ 91 (157)
..+|..+|-++...+..++.++. +. .+. ...+..+.+..+.. ..+||+|++|...+ ...++++.+.+. .
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~--~v~-~~~~~~~a~~~l~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~ 74 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DF--EVT-TCESGPEALACIKK----SDPFSVIMVDMRMPGMEGTEVIQKARLI-S 74 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TS--EEE-EESSHHHHHHHHHH----SCCCSEEEEESCCSSSCHHHHHHHHHHH-C
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-Cc--eEE-EeCCHHHHHHHHHc----CCCCCEEEEeCCCCCCcHHHHHHHHHhc-C
Confidence 46899999999999999888854 43 343 55677777766542 34589999997543 234555555543 3
Q ss_pred CCeEEE
Q 031568 92 VGGIAV 97 (157)
Q Consensus 92 ~gG~iv 97 (157)
+...++
T Consensus 75 ~~~~ii 80 (151)
T 3kcn_A 75 PNSVYL 80 (151)
T ss_dssp SSCEEE
T ss_pred CCcEEE
Confidence 444333
No 449
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=87.70 E-value=3.6 Score=25.75 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=48.8
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++...+..+..++..+.. .+-....+..+.+..+. ..++|+|++|...+. -.++++.+.+. .+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~-~~v~~~~~~~~al~~~~-----~~~~dlvilD~~lp~~~g~~~~~~l~~~-~~ 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDF-EILADTDNGLDAMKLIE-----EYNPNVVILDIEMPGMTGLEVLAEIRKK-HL 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSE-EEEEEESCHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHHT-TC
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCc-EEEEEcCCHHHHHHHHh-----hcCCCEEEEecCCCCCCHHHHHHHHHHH-CC
Confidence 47899999999999999988876521 22234567777666553 346999999975432 34555655543 34
Q ss_pred CeEE
Q 031568 93 GGIA 96 (157)
Q Consensus 93 gG~i 96 (157)
...+
T Consensus 77 ~~~i 80 (133)
T 3b2n_A 77 NIKV 80 (133)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 4433
No 450
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=87.67 E-value=3.2 Score=25.15 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=48.8
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG 93 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~g 93 (157)
+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+.++.+.+ ..+-
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~-~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGY--EVV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV 73 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHH-HCCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCc--EEE-EecCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHh-CCCC
Confidence 688999999999999999988765 343 4567777665553 346999999975432 2345555544 2333
Q ss_pred eEEEE
Q 031568 94 GIAVY 98 (157)
Q Consensus 94 G~iv~ 98 (157)
.++++
T Consensus 74 ~ii~~ 78 (120)
T 2a9o_A 74 PILML 78 (120)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 34444
No 451
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=87.46 E-value=3.4 Score=25.25 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=47.1
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
..+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+.++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ 72 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCc--EEE-EeCCHHHHHHHHh-----cCCCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 45799999999999999999987665 343 4566777666553 357999999975432 23455555443
No 452
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=87.42 E-value=6.1 Score=28.09 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=47.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++...+..+..++..|. .+ ....+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~--~v-~~~~~~~~al~~~~-----~~~~DlvllD~~lp~~~G~~l~~~lr~ 105 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGY--VV-DHADSAMNGLIKAR-----EDHPDLILLDLGLPDFDGGDVVQRLRK 105 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC--EE-EEESSHHHHHHHHH-----HSCCSEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCC--EE-EEeCCHHHHHHHHh-----cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 46899999999999999999987764 33 35667777776654 357999999986543 2334455444
No 453
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=87.36 E-value=3.9 Score=25.76 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=49.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-CCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-SENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
...+|..+|-++...+..++.++..|....+. ...+..+.+..+... ......+|+|++|...+. ..++++.+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~-~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~ 83 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIE-IAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRD 83 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEE-EECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 35679999999999999999999888643443 456777776655310 000157999999975432 3445555544
No 454
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=87.26 E-value=3.5 Score=25.09 Aligned_cols=75 Identities=19% Similarity=0.005 Sum_probs=49.0
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG 93 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~g 93 (157)
+|..+|-++......++.++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+.++.+.+.-..-
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGH--QVD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCC--EEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHhcCCCC
Confidence 688899999999999999988775 343 4566666665553 356999999975432 234555554433233
Q ss_pred eEEEE
Q 031568 94 GIAVY 98 (157)
Q Consensus 94 G~iv~ 98 (157)
.++++
T Consensus 74 ~ii~~ 78 (121)
T 2pl1_A 74 PILVL 78 (121)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 34444
No 455
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=87.20 E-value=3.9 Score=32.06 Aligned_cols=86 Identities=6% Similarity=0.024 Sum_probs=50.3
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHH------------HHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~------------~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||.+++..++. .+.+|+++|++++.++..++. +.+.-...++.+ ..|..+.+. ..|
T Consensus 11 vG~~~A~~la~-~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~~----------~aD 78 (436)
T 1mv8_A 11 VGAVCAGCLSA-RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAVL----------DSD 78 (436)
T ss_dssp THHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHHH----------TCS
T ss_pred HHHHHHHHHHH-CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHhc----------cCC
Confidence 56666554444 356899999999988766541 110000113433 344444332 479
Q ss_pred EEEEcCCCcc----------cHHHHHHHHhcccC---CeEEEE
Q 031568 69 YAFVDADKDN----------YCNYHERLMKLLKV---GGIAVY 98 (157)
Q Consensus 69 ~I~iD~~~~~----------~~~~~~~~~~~L~~---gG~iv~ 98 (157)
+||+-.+.+. ....++.+.+.+++ +.+++.
T Consensus 79 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~ 121 (436)
T 1mv8_A 79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV 121 (436)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred EEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 9998654332 56667777778888 666654
No 456
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.68 E-value=1.7 Score=29.49 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=42.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~ 91 (157)
+.+|+.+|.+++.++.+++ .| +.++.+|+.+ .+.... .-..+|+|++-.+........-...+.+.
T Consensus 63 g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~----~~~~ad~vi~~~~~~~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 63 GKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERIL----DTGHVKLVLLAMPHHQGNQTALEQLQRRN 130 (183)
T ss_dssp CSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBC----SCCCCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHHHHC
Confidence 6789999999988766543 33 3467777643 233210 02469999986543221112222345566
Q ss_pred CCeEEEEe
Q 031568 92 VGGIAVYD 99 (157)
Q Consensus 92 ~gG~iv~~ 99 (157)
|++.+++.
T Consensus 131 ~~~~ii~~ 138 (183)
T 3c85_A 131 YKGQIAAI 138 (183)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEE
Confidence 67777763
No 457
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=86.48 E-value=2.5 Score=32.35 Aligned_cols=75 Identities=5% Similarity=-0.036 Sum_probs=48.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH------cCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~------~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
.+.+|+.++.+++.++..++.-.. ..+.+++.+ ..|..+.+ ...|+||+-.+.....+.++.+
T Consensus 51 ~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~----------~~aDvVilaVp~~~~~~vl~~i 119 (356)
T 3k96_A 51 KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL----------EGVTDILIVVPSFAFHEVITRM 119 (356)
T ss_dssp TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH----------TTCCEEEECCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH----------hcCCEEEECCCHHHHHHHHHHH
Confidence 356899999999988776653211 112223443 34554433 2589999877655566778888
Q ss_pred HhcccCCeEEEE
Q 031568 87 MKLLKVGGIAVY 98 (157)
Q Consensus 87 ~~~L~~gG~iv~ 98 (157)
.+.++++.+++.
T Consensus 120 ~~~l~~~~ivvs 131 (356)
T 3k96_A 120 KPLIDAKTRIAW 131 (356)
T ss_dssp GGGCCTTCEEEE
T ss_pred HHhcCCCCEEEE
Confidence 888988887764
No 458
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=86.45 E-value=4.2 Score=32.28 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=22.7
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHH
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGL 31 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~ 31 (157)
+|+.++...+. .+-+|+++|+|++.++..+
T Consensus 32 VGLp~A~~~A~-~G~~V~g~Did~~kV~~ln 61 (444)
T 3vtf_A 32 VGVVHAVGFAL-LGHRVVGYDVNPSIVERLR 61 (444)
T ss_dssp HHHHHHHHHHH-HTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcEEEEECCHHHHHHHH
Confidence 36777775553 2779999999999988764
No 459
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=86.33 E-value=2.8 Score=32.18 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=46.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 92 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~ 92 (157)
.+.+|+.+|.+++.++.+.+ .|.. ...+..+.+.. ....|+||+-.+.....+.++.+.+.|++
T Consensus 44 ~G~~V~v~dr~~~~~~~l~~----~g~~-----~~~s~~e~~~~-------a~~~DvVi~~vp~~~v~~vl~~l~~~l~~ 107 (358)
T 4e21_A 44 GGHECVVYDLNVNAVQALER----EGIA-----GARSIEEFCAK-------LVKPRVVWLMVPAAVVDSMLQRMTPLLAA 107 (358)
T ss_dssp TTCEEEEECSCHHHHHHHHT----TTCB-----CCSSHHHHHHH-------SCSSCEEEECSCGGGHHHHHHHHGGGCCT
T ss_pred CCCEEEEEeCCHHHHHHHHH----CCCE-----EeCCHHHHHhc-------CCCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 36789999999988765543 2321 23455555543 23569999876544556677777788888
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
|.+|+-
T Consensus 108 g~iiId 113 (358)
T 4e21_A 108 NDIVID 113 (358)
T ss_dssp TCEEEE
T ss_pred CCEEEe
Confidence 777654
No 460
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=86.32 E-value=2.1 Score=32.86 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=49.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~ 79 (157)
|..++..++.. +.+|+.+|.+++..+.+++. .+. .+.....+..+. .+.. ..+|+|+....... .
T Consensus 178 G~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~l-~~~~------~~~DvVi~~~g~~~~~~ 244 (369)
T 2eez_A 178 GTNAAKIALGM-GAQVTILDVNHKRLQYLDDV---FGG--RVITLTATEANI-KKSV------QHADLLIGAVLVPGAKA 244 (369)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHHH-HHHH------HHCSEEEECCC------
T ss_pred HHHHHHHHHhC-CCEEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHHH-HHHH------hCCCEEEECCCCCcccc
Confidence 44445555554 66999999999887766542 333 243333343333 2221 35899987654221 1
Q ss_pred HH-HHHHHHhcccCCeEEEEec
Q 031568 80 CN-YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~-~~~~~~~~L~~gG~iv~~~ 100 (157)
.. +.+...+.+++||+|+.-.
T Consensus 245 ~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 245 PKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp -CCSCHHHHTTSCTTCEEEECC
T ss_pred chhHHHHHHHhhcCCCEEEEEe
Confidence 11 2456678889999887533
No 461
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=86.19 E-value=1.8 Score=32.24 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=46.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYC 80 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~ 80 (157)
|+.+..+++.. +++|+++. +++..+.+ ++.|.+. ++..+-.+ +... -..+|+||-... .
T Consensus 166 G~~a~q~a~~~-Ga~vi~~~-~~~~~~~~----~~lGa~~---~i~~~~~~~~~~~-------~~g~D~v~d~~g----~ 225 (321)
T 3tqh_A 166 GHLAIQLAKQK-GTTVITTA-SKRNHAFL----KALGAEQ---CINYHEEDFLLAI-------STPVDAVIDLVG----G 225 (321)
T ss_dssp HHHHHHHHHHT-TCEEEEEE-CHHHHHHH----HHHTCSE---EEETTTSCHHHHC-------CSCEEEEEESSC----H
T ss_pred HHHHHHHHHHc-CCEEEEEe-ccchHHHH----HHcCCCE---EEeCCCcchhhhh-------ccCCCEEEECCC----c
Confidence 55555666654 67899887 44445444 4456542 23222222 2221 246999885433 2
Q ss_pred HHHHHHHhcccCCeEEEEe
Q 031568 81 NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 81 ~~~~~~~~~L~~gG~iv~~ 99 (157)
..++.+.+.|+++|.++.-
T Consensus 226 ~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 226 DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp HHHHHHGGGEEEEEEEEEC
T ss_pred HHHHHHHHhccCCCEEEEe
Confidence 2347889999999999874
No 462
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=86.13 E-value=4.5 Score=25.90 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc--CCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY--SENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~--~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+..+|..+|-++......+..++..|....+ ....+..+.+..+... ......+|+|++|...+. -.++++.+.+
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v-~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHEL-IILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEE-EEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccE-EEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3568999999999999999999877653223 3556777776655310 000136999999975432 3445555544
No 463
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=86.09 E-value=4.3 Score=25.01 Aligned_cols=68 Identities=6% Similarity=0.057 Sum_probs=46.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++......+..++..|.. .+ ....+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~a~~~~~-----~~~~dlvl~D~~l~~~~g~~~~~~l~~ 75 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFK-QI-TAAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA 75 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCS-CE-ECCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCc-EE-EecCCHHHHHHHHH-----cCCCCEEEEeCCCCCCCHHHHHHHHhc
Confidence 457999999999999999999877652 23 23556777666553 457999999975432 2344555443
No 464
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=86.07 E-value=5.5 Score=27.70 Aligned_cols=76 Identities=8% Similarity=-0.039 Sum_probs=49.3
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccCC
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG 93 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~g 93 (157)
+|..+|-++...+..+..++..+.- .+.....+..+.+..+. ...+|+|++|...+ .-.+.++.+.+. .|+
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~-~vv~~~~~~~~al~~l~-----~~~~dlvllD~~lp~~~g~~~~~~lr~~-~~~ 75 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPEL-DVVGEAGSVAEAMARVP-----AARPDVAVLDVRLPDGNGIELCRDLLSR-MPD 75 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEECSEETTEEHHHHHHHHHHH-CTT
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHh-----hcCCCEEEEeCCCCCCCHHHHHHHHHHh-CCC
Confidence 6889999999999999998875411 22224677777766553 34699999997433 234455555443 455
Q ss_pred eEEEE
Q 031568 94 GIAVY 98 (157)
Q Consensus 94 G~iv~ 98 (157)
.-+++
T Consensus 76 ~~ii~ 80 (225)
T 3c3w_A 76 LRCLI 80 (225)
T ss_dssp CEEEE
T ss_pred CcEEE
Confidence 54444
No 465
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=86.03 E-value=3.1 Score=26.26 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=46.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHH
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM 87 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~ 87 (157)
..+|..+|-++......+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~--~v~-~~~~~~~al~~l~-----~~~~dlvllD~~lp~~~g~~~~~~l~ 77 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTN--DIT-VVTNGLQALQAYQ-----NRQFDVIIMDIQMPVMDGLEAVSEIR 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCS--EEE-EESSHHHHHHHHH-----HSCCSEEEECTTCCSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCC--ceE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 35899999999999999998877654 344 3577777776654 357999999975432 234444444
No 466
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=85.94 E-value=6.3 Score=28.82 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=52.2
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHc---------CCC--------CcEEEEEccHHHHHHHHhhcCCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKA---------GVD--------HKINFIESEALSVLDQLLKYSEN 63 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~---------~~~--------~~i~~~~~d~~~~l~~~~~~~~~ 63 (157)
||.+.+..++. .+.+|+.+|.+++.++.+++.+.+. ++. .++.. ..|..+.+
T Consensus 15 mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~--------- 83 (283)
T 4e12_A 15 LGSQIAFQTAF-HGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV--------- 83 (283)
T ss_dssp HHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT---------
T ss_pred HHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh---------
Confidence 34344443333 3779999999999998887764321 111 12332 23443321
Q ss_pred CCceeEEEEcCCCc--ccHHHHHHHHhcccCCeEEEE
Q 031568 64 EGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 64 ~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~gG~iv~ 98 (157)
...|+|+.-.... ....+++.+.+.++++.+++.
T Consensus 84 -~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s 119 (283)
T 4e12_A 84 -KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT 119 (283)
T ss_dssp -TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3589999876433 345667777788888887764
No 467
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=85.74 E-value=1.7 Score=32.62 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 93 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~-~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L~~g 93 (157)
.+|+++|.+++.++.+++ .|..+. ...+..+ .+ ...|+||+-.+.....+.++.+.+.++++
T Consensus 59 ~~V~~~dr~~~~~~~a~~----~G~~~~---~~~~~~~~~~----------~~aDvVilavp~~~~~~vl~~l~~~l~~~ 121 (314)
T 3ggo_A 59 GKIYGYDINPESISKAVD----LGIIDE---GTTSIAKVED----------FSPDFVMLSSPVRTFREIAKKLSYILSED 121 (314)
T ss_dssp SEEEEECSCHHHHHHHHH----TTSCSE---EESCTTGGGG----------GCCSEEEECSCGGGHHHHHHHHHHHSCTT
T ss_pred CEEEEEECCHHHHHHHHH----CCCcch---hcCCHHHHhh----------ccCCEEEEeCCHHHHHHHHHHHhhccCCC
Confidence 389999999988776643 344221 2234333 21 35899998876666677788888888888
Q ss_pred eEEE
Q 031568 94 GIAV 97 (157)
Q Consensus 94 G~iv 97 (157)
.+++
T Consensus 122 ~iv~ 125 (314)
T 3ggo_A 122 ATVT 125 (314)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7654
No 468
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=85.51 E-value=3.9 Score=26.22 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=34.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH--HHHHhhcCCCCCceeEEEEcCC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~--l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
.+.+|+.+|.+++.++.+++ . .+.++.+|+.+. +... .-..+|.|++-.+
T Consensus 28 ~g~~V~~id~~~~~~~~~~~----~----~~~~~~gd~~~~~~l~~~-----~~~~~d~vi~~~~ 79 (141)
T 3llv_A 28 AGKKVLAVDKSKEKIELLED----E----GFDAVIADPTDESFYRSL-----DLEGVSAVLITGS 79 (141)
T ss_dssp TTCCEEEEESCHHHHHHHHH----T----TCEEEECCTTCHHHHHHS-----CCTTCSEEEECCS
T ss_pred CCCeEEEEECCHHHHHHHHH----C----CCcEEECCCCCHHHHHhC-----CcccCCEEEEecC
Confidence 37799999999998776654 2 356788887653 3332 1356999998665
No 469
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=85.45 E-value=12 Score=29.56 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=49.1
Q ss_pred CcccHHHHHh-hCCCcEEEEEeCChhHHHHHHH------------HHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCce
Q 031568 1 MHLPTKLFMT-GNKILQITAIDVNRETYEIGLP------------IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF 67 (157)
Q Consensus 1 ~g~st~~l~~-~~~~~~v~~ve~~~~~~~~a~~------------~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~f 67 (157)
||.+++..++ ..++.+|+++|++++.++..++ .+++. ...++++ ..|..+.+. ..
T Consensus 16 mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~-~~~~~~~-t~~~~e~~~----------~a 83 (467)
T 2q3e_A 16 VGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC-RGKNLFF-STNIDDAIK----------EA 83 (467)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHHH----------HC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHHh----------cC
Confidence 5666665444 3347799999999998876532 12111 1113433 345444332 47
Q ss_pred eEEEEcCCCcc---------------cHHHHHHHHhcccCCeEEEE
Q 031568 68 DYAFVDADKDN---------------YCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 68 D~I~iD~~~~~---------------~~~~~~~~~~~L~~gG~iv~ 98 (157)
|+||+-.+.+. .....+.+.+.+++|.+++.
T Consensus 84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~ 129 (467)
T 2q3e_A 84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTE 129 (467)
T ss_dssp SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEE
T ss_pred CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEE
Confidence 99998642111 23455666778888777654
No 470
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=85.15 E-value=7.4 Score=26.86 Aligned_cols=75 Identities=8% Similarity=0.087 Sum_probs=50.6
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.+.++.+.+. ..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~~~-----~~~~dlvllD~~l~~~~g~~~~~~l~~~-~~ 75 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGF--EAT-VVTDGPAALAEFD-----RAGADIVLLDLMLPGMSGTDVCKQLRAR-SS 75 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHH-CS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----ccCCCEEEEECCCCCCCHHHHHHHHHcC-CC
Confidence 5799999999999999999988765 343 5567777766553 34699999997543 234455555543 22
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
--++++
T Consensus 76 ~~ii~l 81 (230)
T 2oqr_A 76 VPVIMV 81 (230)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 334444
No 471
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=85.06 E-value=9.1 Score=27.82 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=46.4
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH------HHHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~------~l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++...+. .+++|+.++.+++.++.+.+.+...|. ++..+.+|..+ .+.+..+ ..++.|.++.++.
T Consensus 22 G~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDiLVNNAG 95 (255)
T 4g81_D 22 GFAYAEGLAA-AGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDA---EGIHVDILINNAG 95 (255)
T ss_dssp HHHHHHHHHH-TTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHH---TTCCCCEEEECCC
T ss_pred HHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHH---HCCCCcEEEECCC
Confidence 3344443333 489999999999998888888877764 67888888654 2233322 2468999998763
No 472
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=85.03 E-value=7.2 Score=26.64 Aligned_cols=78 Identities=14% Similarity=-0.011 Sum_probs=49.9
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhccc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK 91 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~ 91 (157)
..+|..+|-++......+..++..+- -.+-....+..+.+..+. ...+|+|++|...+. -.+.++.+.+. .
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~-~~vv~~~~~~~~al~~~~-----~~~~dlvllD~~lp~~~g~~~~~~lr~~-~ 77 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPD-ITVVGEASNGEQGIELAE-----SLDPDLILLDLNMPGMNGLETLDKLREK-S 77 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTT-EEEEEEESSHHHHHHHHH-----HHCCSEEEEETTSTTSCHHHHHHHHHHS-C
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCcHHHHHHHHHHh-C
Confidence 45899999999999988888876531 123234667777766553 346999999975432 34455555543 3
Q ss_pred CC-eEEEE
Q 031568 92 VG-GIAVY 98 (157)
Q Consensus 92 ~g-G~iv~ 98 (157)
|. -++++
T Consensus 78 ~~~~ii~l 85 (215)
T 1a04_A 78 LSGRIVVF 85 (215)
T ss_dssp CCSEEEEE
T ss_pred CCCcEEEE
Confidence 33 34444
No 473
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=84.46 E-value=5.4 Score=24.70 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=46.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~~ 89 (157)
..+|..+|-++......+..++ .+. .+. ...+..+.+..+. ...+|+|++|...+ ...++++.+.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~--~v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 72 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEF--DCT-TAADGASGLQQAL-----AHPPDVLISDVNMDGMDGYALCGHFRSE 72 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTS--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCc--EEE-EECCHHHHHHHHh-----cCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 4689999999999999988876 443 343 5567777776654 35799999997533 234556665543
No 474
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=84.37 E-value=5.3 Score=24.54 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=48.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
+..+|..+|-++...+..+..++..|.. .+ ....+..+.+..+. ..++|+|++|...+. -.+.++.+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~-~v-~~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~l~~~l~~ 73 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFN-NV-EEAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA 73 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCc-EE-EeeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3457999999999999999999887753 23 34567777776553 457999999975432 2344555543
No 475
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}
Probab=84.22 E-value=0.55 Score=36.15 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=38.9
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~ 74 (157)
|+.+..+|+.. +++|++++.+++..+.+++ .|.+.-+.....|..+.+.++.. ...+|+||-..
T Consensus 185 G~~a~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~~g~d~v~d~~ 248 (379)
T 3iup_A 185 GQMLNQICLKD-GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----STGATIAFDAT 248 (379)
T ss_dssp HHHHHHHHHHH-TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----HHCCCEEEESC
T ss_pred HHHHHHHHHHC-CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----CCCceEEEECC
Confidence 44455566554 6799999999999887764 56543333333455555544321 23699988443
No 476
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=83.99 E-value=3.4 Score=31.57 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=49.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~ 79 (157)
|..++..++.. +.+|+.+|.+++..+.+++.... .+..+..+..+....+ ..+|+|+.....+. .
T Consensus 179 G~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~DvVI~~~~~~~~~~ 245 (361)
T 1pjc_A 179 GTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEADLLIGAVLVPGRRA 245 (361)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTCSEEEECCCCTTSSC
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cCCCEEEECCCcCCCCC
Confidence 34444555554 55999999999988888765422 2333433433332322 25899976543221 0
Q ss_pred HH-HHHHHHhcccCCeEEEE
Q 031568 80 CN-YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 80 ~~-~~~~~~~~L~~gG~iv~ 98 (157)
+. +.+...+.+++||+++-
T Consensus 246 ~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 246 PILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CCCBCHHHHTTSCTTCEEEE
T ss_pred CeecCHHHHhhCCCCCEEEE
Confidence 11 13456678999998765
No 477
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=83.09 E-value=11 Score=27.07 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=41.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcC
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDA 74 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~ 74 (157)
.+++|+.++.+++..+.+.+.+++.+- .++.++.+|..+. +.+..+ ..+..|.++.++
T Consensus 31 ~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iD~lvnnA 94 (256)
T 4fs3_A 31 LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK---DVGNIDGVYHSI 94 (256)
T ss_dssp TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH---HHCCCSEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH---HhCCCCEEEecc
Confidence 489999999999999888888877654 3678888886432 222221 136799998765
No 478
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=82.99 E-value=9.7 Score=26.55 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=49.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhcccC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV 92 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~L~~ 92 (157)
.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+. -.+.++.+.+.- .
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlvilD~~l~~~~g~~~~~~lr~~~-~ 76 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGF--DTA-VIGDGTQALTAVR-----ELRPDLVLLDLMLPGMNGIDVCRVLRADS-G 76 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECCGGGHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHTTC-C
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHhCC-C
Confidence 5899999999999999999988765 343 4566666665553 346999999975432 344555554432 2
Q ss_pred CeEEEE
Q 031568 93 GGIAVY 98 (157)
Q Consensus 93 gG~iv~ 98 (157)
--+|++
T Consensus 77 ~~ii~l 82 (238)
T 2gwr_A 77 VPIVML 82 (238)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 334444
No 479
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=82.73 E-value=3.3 Score=39.86 Aligned_cols=88 Identities=6% Similarity=-0.128 Sum_probs=54.0
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.++.+|+. -+++|++++.+++..+.+++.+...|...-+.....+..+.+.... ....+|+||--.. .+
T Consensus 1681 G~aAiqlAk~-~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t----~g~GvDvVld~~g----~~ 1751 (2512)
T 2vz8_A 1681 GQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHT----AGKGVDLVLNSLA----EE 1751 (2512)
T ss_dssp HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTT----TSCCEEEEEECCC----HH
T ss_pred HHHHHHHHHH-cCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhc----CCCCceEEEECCC----ch
Confidence 4444555655 4789999999998888777654334443212212223333333221 1246999985322 56
Q ss_pred HHHHHHhcccCCeEEEE
Q 031568 82 YHERLMKLLKVGGIAVY 98 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~ 98 (157)
.++.+.+.|+++|.++.
T Consensus 1752 ~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A 1752 KLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 78889999999999886
No 480
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=82.69 E-value=6.2 Score=24.10 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=45.6
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
.+|..+|-++...+..+..++..|. .+. ...+..+.+..+. ...+|+|++|...+ .-.+.++.+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~--~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGF--QPV-EAEDYDSAVNQLN-----EPWPDLILLAWMLPGGSGIQFIKHLRR 70 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EECSHHHHHTTCS-----SSCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCc--eEE-EeCCHHHHHHHHh-----ccCCCEEEEecCCCCCCHHHHHHHHHh
Confidence 4789999999999999999988765 343 4566666665442 45799999996432 22445555544
No 481
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=82.37 E-value=7 Score=24.48 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=44.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++......++.++.. ..+. ...+..+.+..+. ...+|+|++|...+. -.++++.+.+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~---~~v~-~~~~~~~a~~~~~-----~~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE---YLVI-ESKNEKEALEQID-----HHHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT---SEEE-EESSHHHHHHHHH-----HHCCSEEEEETTC------CHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc---ceEE-EeCCHHHHHHHHh-----cCCCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 458999999999999999888665 2343 4567777776554 357999999975432 2334445443
No 482
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=82.34 E-value=3.4 Score=31.00 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH----cCCCC--cEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHH
Q 031568 13 KILQITAIDVNRETYEIGLPIIKK----AGVDH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL 86 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~----~~~~~--~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~ 86 (157)
.+.+|+.+|.+++.++..++.... .+... ++.....|..+.+ ..+|+|++-.......+.++.+
T Consensus 26 ~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~D~vi~~v~~~~~~~~~~~l 95 (359)
T 1bg6_A 26 KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----------KDADVILIVVPAIHHASIAANI 95 (359)
T ss_dssp TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----------TTCSEEEECSCGGGHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH----------hcCCEEEEeCCchHHHHHHHHH
Confidence 357899999999887766553200 00110 1101234443322 3589999987665667788888
Q ss_pred HhcccCCeEEEEe
Q 031568 87 MKLLKVGGIAVYD 99 (157)
Q Consensus 87 ~~~L~~gG~iv~~ 99 (157)
.+.++++.+++..
T Consensus 96 ~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 96 ASYISEGQLIILN 108 (359)
T ss_dssp GGGCCTTCEEEES
T ss_pred HHhCCCCCEEEEc
Confidence 8889998877764
No 483
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=82.09 E-value=2.7 Score=30.71 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=40.7
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhc-cc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL-LK 91 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~-L~ 91 (157)
++.+|+.+|.+++.++.+++ .|... ....|..+.+ ...|+||+-.+.....+.++.+.+. ++
T Consensus 30 ~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~~----------~~aDvVilavp~~~~~~v~~~l~~~~l~ 92 (290)
T 3b1f_A 30 PHYKIVGYNRSDRSRDIALE----RGIVD---EATADFKVFA----------ALADVIILAVPIKKTIDFIKILADLDLK 92 (290)
T ss_dssp TTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTTTTG----------GGCSEEEECSCHHHHHHHHHHHHTSCCC
T ss_pred CCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHHHhh----------cCCCEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 36789999999988776543 34321 1122322211 2478888876544455666666666 77
Q ss_pred CCeEEE
Q 031568 92 VGGIAV 97 (157)
Q Consensus 92 ~gG~iv 97 (157)
++.+++
T Consensus 93 ~~~ivi 98 (290)
T 3b1f_A 93 EDVIIT 98 (290)
T ss_dssp TTCEEE
T ss_pred CCCEEE
Confidence 766555
No 484
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=82.02 E-value=6 Score=29.50 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=48.4
Q ss_pred EEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH-HhhcCCCCCceeEEEEcCCCc-----------------c
Q 031568 17 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDYAFVDADKD-----------------N 78 (157)
Q Consensus 17 v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~-~~~~~~~~~~fD~I~iD~~~~-----------------~ 78 (157)
|.++|+++.+++..+.|.. ...++.+|+.++... +.+ .+.+|+++..+++. .
T Consensus 43 v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~----~~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~ 112 (295)
T 2qrv_A 43 YIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE----WGPFDLVIGGSPCNDLSIVNPARKGLYEGTGR 112 (295)
T ss_dssp EEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH----TCCCSEEEECCCCGGGBTTCTTCCTTTSTTTT
T ss_pred EEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc----cCCcCEEEecCCCccccccCccccccccccch
Confidence 6999999999988888752 335788998876432 211 24699999764211 0
Q ss_pred -cHHHHHHHHhcccCCe------EEEEeccc
Q 031568 79 -YCNYHERLMKLLKVGG------IAVYDNTL 102 (157)
Q Consensus 79 -~~~~~~~~~~~L~~gG------~iv~~~~~ 102 (157)
+.+++ .+.+.++|.. +++++|+.
T Consensus 113 L~~~~~-rii~~~~P~~~~~~P~~~l~ENV~ 142 (295)
T 2qrv_A 113 LFFEFY-RLLHDARPKEGDDRPFFWLFENVV 142 (295)
T ss_dssp HHHHHH-HHHHHHSCCTTCCCCCEEEEEEES
T ss_pred hHHHHH-HHHHHhCcccccCCccEEEEEcCc
Confidence 12222 3345667762 88899984
No 485
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=81.92 E-value=4.2 Score=31.82 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=48.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHhhcCCCCCceeEEEEcCCCcccHHHHHHHHhcc
Q 031568 13 KILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 90 (157)
Q Consensus 13 ~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~--~l~~~~~~~~~~~~fD~I~iD~~~~~~~~~~~~~~~~L 90 (157)
.+..|+.||.|++.++.+++ .| +.++.||+.+ .|... .-...|+|++-.+....-...-...+.+
T Consensus 26 ~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~~A~~viv~~~~~~~n~~i~~~ar~~ 92 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAKAEVLINAIDDPQTNLQLTEMVKEH 92 (413)
T ss_dssp TTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCCccCEEEECCCChHHHHHHHHHHHHh
Confidence 47889999999999887764 33 4578999865 34433 1357999998765432222333445677
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
.|+..+++
T Consensus 93 ~p~~~Iia 100 (413)
T 3l9w_A 93 FPHLQIIA 100 (413)
T ss_dssp CTTCEEEE
T ss_pred CCCCeEEE
Confidence 78877765
No 486
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=81.89 E-value=3 Score=32.11 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=48.7
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--c
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--Y 79 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~ 79 (157)
|..++..++.. +.+|+++|.+++..+.+++.+ |. .+.....+..+. .+.. ...|+|+.....+. .
T Consensus 180 G~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l-~~~l------~~aDvVi~~~~~p~~~t 246 (377)
T 2vhw_A 180 GYNAARIANGM-GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYEL-EGAV------KRADLVIGAVLVPGAKA 246 (377)
T ss_dssp HHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHH-HHHH------HHCSEEEECCCCTTSCC
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHH-HHHH------cCCCEEEECCCcCCCCC
Confidence 44455555554 569999999998877765532 33 222222233222 2221 25899987542221 1
Q ss_pred HH-HHHHHHhcccCCeEEEEec
Q 031568 80 CN-YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 80 ~~-~~~~~~~~L~~gG~iv~~~ 100 (157)
+. +.+...+.+++||+|+--.
T Consensus 247 ~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 247 PKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CCCBCHHHHTTSCTTCEEEEGG
T ss_pred cceecHHHHhcCCCCcEEEEEe
Confidence 11 1355678899999887533
No 487
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=81.77 E-value=0.92 Score=34.32 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=28.9
Q ss_pred CcccHHHHHhhCCCcEEEEEeCCh---hHHHHHHHHHHHcC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNR---ETYEIGLPIIKKAG 38 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~---~~~~~a~~~~~~~~ 38 (157)
+|-.|...++..-+.+.+++|+++ +.++.+++.+++.+
T Consensus 251 ~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 251 AGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 466777777755589999999999 99999999988766
No 488
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=81.73 E-value=5.1 Score=29.05 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=41.9
Q ss_pred cEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCC-ceeEEEEcCCCcccHHHHHHHHhcccCC
Q 031568 15 LQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFDYAFVDADKDNYCNYHERLMKLLKVG 93 (157)
Q Consensus 15 ~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~-~fD~I~iD~~~~~~~~~~~~~~~~L~~g 93 (157)
.+|+.+|.+++.++.++ +.|... . ...|..+. -. ..|+|++-.+.....+.++.+.+.++++
T Consensus 27 ~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~----------~~~~aDvVilavp~~~~~~v~~~l~~~l~~~ 89 (281)
T 2g5c_A 27 GKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV----------EDFSPDFVMLSSPVRTFREIAKKLSYILSED 89 (281)
T ss_dssp SEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----------GGTCCSEEEECSCHHHHHHHHHHHHHHSCTT
T ss_pred cEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH----------hcCCCCEEEEcCCHHHHHHHHHHHHhhCCCC
Confidence 38999999998877654 345421 1 12333222 13 5899998766555556667777778887
Q ss_pred eEEEE
Q 031568 94 GIAVY 98 (157)
Q Consensus 94 G~iv~ 98 (157)
.+++.
T Consensus 90 ~iv~~ 94 (281)
T 2g5c_A 90 ATVTD 94 (281)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 76553
No 489
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=81.54 E-value=2.5 Score=32.05 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=34.3
Q ss_pred cEE-EEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHH-HHhhcCCCCCceeEEEEcCCC
Q 031568 15 LQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYAFVDADK 76 (157)
Q Consensus 15 ~~v-~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~-~~~~~~~~~~~fD~I~iD~~~ 76 (157)
..+ .++|+++.+++..+.|+... ++.+|+.++.. .+. ...+|+++..+++
T Consensus 35 ~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~-----~~~~Dil~ggpPC 86 (327)
T 3qv2_A 35 NATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE-----SLNCNTWFMSPPC 86 (327)
T ss_dssp CEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH-----HTCCCEEEECCCC
T ss_pred eEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc-----cCCCCEEEecCCc
Confidence 456 69999999999999988432 45677765432 221 2369999977653
No 490
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=81.53 E-value=1.7 Score=35.75 Aligned_cols=40 Identities=15% Similarity=0.400 Sum_probs=27.3
Q ss_pred CCceeEEEEcCCCc----ccHHHHH----------HHHhcccCCeEEEEecccC
Q 031568 64 EGSFDYAFVDADKD----NYCNYHE----------RLMKLLKVGGIAVYDNTLW 103 (157)
Q Consensus 64 ~~~fD~I~iD~~~~----~~~~~~~----------~~~~~L~~gG~iv~~~~~~ 103 (157)
.++||+||++...+ .|.+.-+ .++.+|+|||.+++..-.+
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGy 272 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGY 272 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeec
Confidence 46899999997432 3444322 3457999999999865443
No 491
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=81.46 E-value=8.6 Score=27.91 Aligned_cols=68 Identities=6% Similarity=0.026 Sum_probs=46.5
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++...+. .+++|+.++.+++.++.+.+.++..|. ++..+.+|..+. +.+..+ ..++.|.++.++.
T Consensus 20 G~aiA~~la~-~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~---~~G~iDiLVNNAG 93 (254)
T 4fn4_A 20 GRAIAKKFAL-NDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFE---TYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH---HHSCCCEEEECCC
T ss_pred HHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH---HcCCCCEEEECCc
Confidence 3344443333 489999999999999988888887764 688888986542 222221 1367999998763
No 492
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=81.38 E-value=7.4 Score=24.06 Aligned_cols=69 Identities=7% Similarity=0.123 Sum_probs=47.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHh
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK 88 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~ 88 (157)
..+|..+|-++...+..++.++..|.. .+ ....+..+.+..+.. ...+|+|++|...+. -.++++.+.+
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~-~v-~~~~~~~~a~~~~~~----~~~~dlvi~D~~~p~~~g~~~~~~lr~ 75 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYE-DV-LEAEHGVEAWEKLDA----NADTKVLITDWNMPEMNGLDLVKKVRS 75 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCC-CE-EEESSHHHHHHHHHH----CTTCCEEEECSCCSSSCHHHHHHHHHT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCc-EE-EEeCCHHHHHHHHHh----CCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 457999999999999999999988764 23 345666666655531 346999999975443 2445555544
No 493
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=81.19 E-value=1.5 Score=32.89 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=25.5
Q ss_pred CceeEEEEcCCCc----ccHH----------HHHHHHhcccCCeEEEEec
Q 031568 65 GSFDYAFVDADKD----NYCN----------YHERLMKLLKVGGIAVYDN 100 (157)
Q Consensus 65 ~~fD~I~iD~~~~----~~~~----------~~~~~~~~L~~gG~iv~~~ 100 (157)
++||+||+|.... .|.+ ..+.+..+|+|||.+++.-
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kv 254 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIG 254 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEE
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 5799999997432 2231 2445568999999999974
No 494
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=81.17 E-value=9.4 Score=30.09 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=49.1
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhc-----CCCCCceeEEEEcCC
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SENEGSFDYAFVDAD 75 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~-----~~~~~~fD~I~iD~~ 75 (157)
||+.++..++.. +-+|+++|++++.++..++. .. .+ ..-...+.+.+..+. ......-|+||+.-+
T Consensus 22 vGlp~A~~La~~-G~~V~~~D~~~~kv~~L~~g-----~~-pi--~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~Vp 92 (431)
T 3ojo_A 22 IGLPTSIMFAKH-GVDVLGVDINQQTIDKLQNG-----QI-SI--EEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVP 92 (431)
T ss_dssp THHHHHHHHHHT-TCEEEEECSCHHHHHHHHTT-----CC-SS--CCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCC
T ss_pred HHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCC-----CC-Cc--CCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeC
Confidence 677777666553 78999999999998877541 11 11 222222222211000 000124788887532
Q ss_pred Ccc------------cHHHHHHHHhcccCCeEEEEe
Q 031568 76 KDN------------YCNYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~~------------~~~~~~~~~~~L~~gG~iv~~ 99 (157)
.+. .....+.+.+.|++|.++|..
T Consensus 93 Tp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~ 128 (431)
T 3ojo_A 93 TPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVE 128 (431)
T ss_dssp CCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEEC
T ss_pred CCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 211 233345667789998877754
No 495
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=81.13 E-value=14 Score=27.11 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=52.6
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHH------HHHHhhcCCCCCceeEEEEcCC
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYSENEGSFDYAFVDAD 75 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~------l~~~~~~~~~~~~fD~I~iD~~ 75 (157)
|..++...+. .+++|+.++.+++.++.+.+ +.+ .++..+.+|..+. +.+..+ ..++.|.++.++.
T Consensus 42 G~aiA~~la~-~Ga~V~i~~r~~~~l~~~~~---~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~G~iDiLVNNAG 112 (273)
T 4fgs_A 42 GLAAAKRFVA-EGARVFITGRRKDVLDAAIA---EIG--GGAVGIQADSANLAELDRLYEKVKA---EAGRIDVLFVNAG 112 (273)
T ss_dssp HHHHHHHHHH-TTCEEEEEESCHHHHHHHHH---HHC--TTCEEEECCTTCHHHHHHHHHHHHH---HHSCEEEEEECCC
T ss_pred HHHHHHHHHH-CCCEEEEEECCHHHHHHHHH---HcC--CCeEEEEecCCCHHHHHHHHHHHHH---HcCCCCEEEECCC
Confidence 3344443333 58999999999988776544 334 3567788886432 222221 1367999998763
Q ss_pred Cc-----------ccH-----------HHHHHHHhcccCCeEEEEe
Q 031568 76 KD-----------NYC-----------NYHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 76 ~~-----------~~~-----------~~~~~~~~~L~~gG~iv~~ 99 (157)
.. .+. ...+.+.++++.+|.||.-
T Consensus 113 ~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 113 GGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp CCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 21 111 1234455788888887753
No 496
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=80.83 E-value=10 Score=28.93 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=46.4
Q ss_pred EEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCc--ccHHHHHHHHh
Q 031568 16 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK 88 (157)
Q Consensus 16 ~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~--~~~~~~~~~~~ 88 (157)
+|..||-++......+..++..|.. + ....+..+.+..+. ...||+|++|-..+ .-.++++.+.+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~~~DlvllDi~mP~~dG~ell~~lr~ 68 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYH--P-DTAKTLREAEKKIK-----ELFFPVIVLDVWMPDGDGVNFIDFIKE 68 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HBCCSEEEEESEETTEETTTHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCE--E-EEECCHHHHHHHHH-----hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 6889999999999999999988763 4 45677777776654 45799999996432 12334555443
No 497
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=80.83 E-value=0.41 Score=35.70 Aligned_cols=74 Identities=12% Similarity=0.126 Sum_probs=45.2
Q ss_pred cccHHHHHhhCCCcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcccHH
Q 031568 2 HLPTKLFMTGNKILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCN 81 (157)
Q Consensus 2 g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~~~~ 81 (157)
|+.+..+|+.. +++|++++ +++..+.+++ .|.+ .++. | . .++ .+.+|+||-.... .
T Consensus 155 G~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~-d-~---~~v------~~g~Dvv~d~~g~----~ 210 (315)
T 3goh_A 155 NNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----RGVR---HLYR-E-P---SQV------TQKYFAIFDAVNS----Q 210 (315)
T ss_dssp HHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----HTEE---EEES-S-G---GGC------CSCEEEEECC--------
T ss_pred HHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----cCCC---EEEc-C-H---HHh------CCCccEEEECCCc----h
Confidence 55555666654 66999999 9998888765 4542 2222 4 1 222 3579998843322 1
Q ss_pred HHHHHHhcccCCeEEEEe
Q 031568 82 YHERLMKLLKVGGIAVYD 99 (157)
Q Consensus 82 ~~~~~~~~L~~gG~iv~~ 99 (157)
.+..+.+.|+++|.++.-
T Consensus 211 ~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 211 NAAALVPSLKANGHIICI 228 (315)
T ss_dssp ---TTGGGEEEEEEEEEE
T ss_pred hHHHHHHHhcCCCEEEEE
Confidence 235678999999999874
No 498
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=80.49 E-value=6.8 Score=28.68 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=46.9
Q ss_pred EEEEEeCC--hhHHHHHHHHHHHcCCCCcEEEEEccHH-HHHHHHhhcCCCCCceeEEEEcC-CC-cccHHHHHHHHhcc
Q 031568 16 QITAIDVN--RETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSENEGSFDYAFVDA-DK-DNYCNYHERLMKLL 90 (157)
Q Consensus 16 ~v~~ve~~--~~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~l~~~~~~~~~~~~fD~I~iD~-~~-~~~~~~~~~~~~~L 90 (157)
+|..|+-+ +.......+.++..|. .|+++..+.. .....+ .+||+|+++. .. .-....++.+.+.+
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~--~V~~i~~~~~~~~~~~L-------~~yDvIIl~d~~~~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQW--EFDYIPSHVGLDVGELL-------AKQDLVILSDYPAERMTAQAIDQLVTMV 76 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTC--CCEEECTTSCBCSSHHH-------HTCSEEEEESCCGGGBCHHHHHHHHHHH
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCc--eEEEecccccccChhHH-------hcCCEEEEcCCccccCCHHHHHHHHHHH
Confidence 56666765 6677778888888887 3676654422 111222 3699998863 22 12356677777888
Q ss_pred cCCeEEEE
Q 031568 91 KVGGIAVY 98 (157)
Q Consensus 91 ~~gG~iv~ 98 (157)
+.||-+++
T Consensus 77 ~~GGgLi~ 84 (259)
T 3rht_A 77 KAGCGLVM 84 (259)
T ss_dssp HTTCEEEE
T ss_pred HhCCeEEE
Confidence 88776665
No 499
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=80.25 E-value=5.9 Score=30.71 Aligned_cols=82 Identities=6% Similarity=0.077 Sum_probs=48.0
Q ss_pred CcccHHHHHhhCCCcEEEEEeCChhHHHHHHHHH------------HHcCCCCcEEEEEccHHHHHHHHhhcCCCCCcee
Q 031568 1 MHLPTKLFMTGNKILQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLKYSENEGSFD 68 (157)
Q Consensus 1 ~g~st~~l~~~~~~~~v~~ve~~~~~~~~a~~~~------------~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD 68 (157)
||.+.+..++. +.+|+++|++++.++..++.. ... ..++.+ ..|..+.+. ..|
T Consensus 11 vG~~~A~~La~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~--~~~l~~-t~~~~~~~~----------~aD 75 (402)
T 1dlj_A 11 VGLSLGVLLSL--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK--QLSIKA-TLDSKAAYK----------EAE 75 (402)
T ss_dssp HHHHHHHHHTT--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS--CCCEEE-ESCHHHHHH----------HCS
T ss_pred HHHHHHHHHhC--CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhc--cCcEEE-eCCHHHHhc----------CCC
Confidence 35555444443 679999999998877654311 000 112332 234433322 479
Q ss_pred EEEEcCCCc-----------ccHHHHHHHHhcccCCeEEEE
Q 031568 69 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVY 98 (157)
Q Consensus 69 ~I~iD~~~~-----------~~~~~~~~~~~~L~~gG~iv~ 98 (157)
+||+-...+ ...+.++.+.+ +++|.+++.
T Consensus 76 vviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~ 115 (402)
T 1dlj_A 76 LVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII 115 (402)
T ss_dssp EEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred EEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence 999865433 24566677777 888888775
No 500
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=80.11 E-value=13 Score=28.33 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=49.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHhhcCCCCCceeEEEEcCCCcc--cHHHHHHHHhc
Q 031568 14 ILQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKL 89 (157)
Q Consensus 14 ~~~v~~ve~~~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~l~~~~~~~~~~~~fD~I~iD~~~~~--~~~~~~~~~~~ 89 (157)
..+|..||-++......++.++..|. .+ ....+..+.+..+. ..++|+|++|-..+. -.+.++.+.+.
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~--~v-~~a~~~~~al~~~~-----~~~~dlvllD~~mp~~~G~~~~~~lr~~ 74 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNF--KV-LQALNGLQGLQIFE-----SEQPDLVICDLRMPQIDGLELIRRIRQT 74 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTE--EE-EECSSHHHHHHHHH-----HSCCSEEEECCCSSSSCTHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHh-----hCCCCEEEEcCCCCCCCHHHHHHHHHhh
Confidence 46899999999999999999988765 34 34567777776654 457999999975332 34556665544
Done!