BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031569
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 75/103 (72%), Gaps = 1/103 (0%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 12 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 70
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSN 114
PEHV++ALE LGFG YI EV ++ K ++ + N
Sbjct: 71 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLEN 113
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 6 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 65
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y+E
Sbjct: 66 GEDILFAMSTLGFDSYVE 83
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 64
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y+E
Sbjct: 65 GEDILFAMSTLGFDSYVE 82
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K LP + ++A++A++ + EC EFI+ ++SE++E C +E ++T+
Sbjct: 4 QDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRKTVN 63
Query: 72 PEHVLKALEVLGFGEYIE 89
E +L A+ LGF Y E
Sbjct: 64 GEDILFAMTSLGFENYAE 81
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A + ++IKE LP V+++A+ + F V+S S + +++ +TI
Sbjct: 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT 65
Query: 72 PEHVLKALEVLGFGEYI 88
+ +L+ L L F ++
Sbjct: 66 AKDILQTLTELDFESFV 82
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75
LPKA + +I ++ + + R+++DA+D + + V++ + V K+T+ EH
Sbjct: 5 LPKAAIERIFRQGI-GERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLXEEH- 62
Query: 76 LKAL 79
LKAL
Sbjct: 63 LKAL 66
>pdb|2YK1|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With Nicotine
Length = 216
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRT 69
S E+ PKAT+ +I + P V VA A ++ VE S +SN + +
Sbjct: 125 SSEELQAPKATLVCLISDFYPGAVTVAWKADSSPVKAGVE-TTTPSKQSNNKYAASSYLS 183
Query: 70 IAPE----HVLKALEVLGFGEYIEEVYAAYE 96
+ PE H + +V G +E+ A E
Sbjct: 184 LTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE 214
>pdb|3N8T|A Chain A, Native Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3N92|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose
pdb|3N98|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose And Additives
Length = 562
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 86 EYIEEVYAAYEQHKLETMQDSLKGGKW 112
EY+++ + Y + KL+ M++ LK GK+
Sbjct: 71 EYMKKAFEEYMERKLKAMEEDLKSGKY 97
>pdb|3OA1|A Chain A, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
pdb|3OA1|B Chain B, Crystal Structure Of PhosphoproteinPROTEIN PPROTEIN M1
RESIDUES 69- 297 From Rabies Virus Reveals Degradation
To C-Terminal Domain Only
Length = 229
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 18 KATMTKIIKEM--LPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDK 67
K + I+KE +P R+ARD L + C + ++ L +S+ ++ +K
Sbjct: 163 KMNLDDIVKEAKNVPGVTRLARDGSKLPLRCVLGWVALANSKKFQLLVESNK 214
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 55 SSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87
+ + NE R D R PE + K VL + Y
Sbjct: 243 TQDKNEAAERRDMRVSLPELLAKGFTVLNYNSY 275
>pdb|3DO5|A Chain A, Crystal Structure Of Putative Homoserine Dehydrogenase
(Np_069768.1) From Archaeoglobus Fulgidus At 2.20 A
Resolution
Length = 327
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 35 VARDAQDLLIECCVEFI-NLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86
V + A+ L C +E + + + N + SR ++ + EH+LK + LG+ E
Sbjct: 149 VVKLAKRYLALCEIESVKGIFNGTCNYILSRXEEERLPYEHILKEAQELGYAE 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,175,776
Number of Sequences: 62578
Number of extensions: 133741
Number of successful extensions: 269
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 13
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)