BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031569
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 268 bits (685), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 129/153 (84%), Positives = 142/153 (92%), Gaps = 1/153 (0%)
Query: 1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNE 60
M+PMDIVGKSKEDASLPKATMTKIIKEMLP DVRVARDAQDLLIECCVEFINLVSSESN+
Sbjct: 1 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND 60
Query: 61 VCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTE 120
VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK ETMQD+ + KW+ GA+MTE
Sbjct: 61 VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE 120
Query: 121 EEAAAEQQRMFAEARARMNGGAAGP-PKQPDIN 152
EEAAAEQQRMFAEARARMNGG + P P+ P+ +
Sbjct: 121 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETD 153
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 94/127 (74%), Gaps = 2/127 (1%)
Query: 11 KED-ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRT 69
KED SLPKAT++K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C RE KRT
Sbjct: 7 KEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRT 66
Query: 70 IAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQR 129
IA EHV+KAL LGF +Y ++V Y++HKLE S K+ N + T E+ EQQ
Sbjct: 67 IAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSKKFENLGKPT-EQLIREQQL 125
Query: 130 MFAEARA 136
+FA+AR+
Sbjct: 126 LFAKARS 132
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMF 131
PEHV++ALE LGFG YI EV ++ K ++ + N + EEE +QQ +F
Sbjct: 68 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG-IPEEELLRQQQELF 126
Query: 132 AEAR 135
A+AR
Sbjct: 127 AKAR 130
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMF 131
PEHV++ALE LGFG YI EV ++ K ++ + N + EEE +QQ +F
Sbjct: 68 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG-IPEEELLRQQQELF 126
Query: 132 AEAR 135
A+AR
Sbjct: 127 AKAR 130
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMF 131
PEHV++ALE LGFG YI EV ++ K ++ + N + EEE +QQ +F
Sbjct: 68 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG-IPEEELLRQQQELF 126
Query: 132 AEAR 135
A+AR
Sbjct: 127 AKAR 130
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D ++P+A + K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+
Sbjct: 9 DDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMF 131
PEHV++ALE LGFG YI EV ++ K ++ + N + EEE +QQ +F
Sbjct: 68 PEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLG-IPEEELLRQQQELF 126
Query: 132 AEAR 135
A+AR
Sbjct: 127 AKAR 130
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 8 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDK 67
G + ++ SLPKAT+ K++ ++LP D+ ++A+DLLIECCVEFI+LVSSE+NE+C +E K
Sbjct: 4 GFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAK 63
Query: 68 RTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQ 127
+TIA EH++KALE L F EYI E +HK + K K+ ++ +E +Q
Sbjct: 64 KTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQ 122
Query: 128 QRMFAEARARMNG 140
+ + + AR R
Sbjct: 123 EELLSRARERFKN 135
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
++ +LP+A++ KIIKE++P VRVA ++++L++ CC EFI+L+SSE+NEVC+ +K+TI
Sbjct: 16 DELTLPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTIN 74
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMF 131
EHVL+ALE LGF +Y +E A K + + + N + EEE +QQ +F
Sbjct: 75 AEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENLG-IPEEELLRQQQELF 133
Query: 132 A 132
A
Sbjct: 134 A 134
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 89/139 (64%), Gaps = 9/139 (6%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
++ SLPKAT+ K+I E+L D+ +DA++++I +EFI ++SS ++E+ E K+TIA
Sbjct: 6 DNVSLPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIA 65
Query: 72 PEHVLKALEVLGFGEYI---EEVYAAYE-QHKLETMQDSLKGGKWSNGAEMTEEEAAAEQ 127
PEHV+KALE L + E+I EE+ ++ K++ +DS K+ ++EEE +Q
Sbjct: 66 PEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS----KFKKSG-LSEEELLRQQ 120
Query: 128 QRMFAEARARMNGGAAGPP 146
+ +F ++R+R++ + P
Sbjct: 121 EELFRQSRSRLHHNSVSDP 139
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 71/116 (61%), Gaps = 5/116 (4%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P+ ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 56 QDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 115
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQ 127
E +L A+ LGF Y+E + + L+ ++S+KG K N +T +A E+
Sbjct: 116 GEDILFAMSTLGFDSYVEPL-----KQYLQKYRESMKGEKGINATVVTTTDAIPEE 166
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 8 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDK 67
G ++D LP A +++I+K+ +PA+ ++A+DA++ L EC EFI+ V+SE+++ C +E +
Sbjct: 31 GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKR 90
Query: 68 RTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA 116
+TI E +L A+ LGF EY++ + +++ E + DS K +G+
Sbjct: 91 KTINGEDLLFAMGTLGFEEYVDPLKIYLHKYR-EVIGDSKLSSKAGDGS 138
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K+ +PA+ ++A+DA++ + EC EFI+ ++SE+++ C RE ++TI
Sbjct: 32 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 91
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA 116
+ +L A+ LGF +YIE + Y Q E DS K S+G+
Sbjct: 92 GDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKSSDGS 135
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K LPA+ ++A+DA++++ EC EFI+ V+SE+++ C RE ++TI
Sbjct: 31 QDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTIN 90
Query: 72 PEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGG 110
+ +L A+ LGF +Y+E +VY + + S KGG
Sbjct: 91 GDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 67/105 (63%), Gaps = 1/105 (0%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K+ +PA+ ++A+DA++ + EC EFI+ ++SE+++ C RE ++TI
Sbjct: 39 QDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 98
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA 116
+ +L A+ LGF +YIE + Y Q E DS K +G+
Sbjct: 99 GDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKAGDGS 142
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K LP + ++A+DA++ + EC EFI+ V+SE+++ C RE ++TI
Sbjct: 30 QDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTIN 89
Query: 72 PEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGGKWS 113
+ +L A+ LGF +YI+ +VY + + S KGG+ S
Sbjct: 90 GDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESS 133
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 61/88 (69%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K+ LPA+ ++++DA++ + EC EFI+ ++ E+++ C RE ++TI
Sbjct: 22 QDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTIN 81
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHK 99
+ +L A+ LGF +Y+E + ++++
Sbjct: 82 GDDLLWAMTTLGFEDYVEPLKVYLQKYR 109
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 55 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA---------EMTEE 121
E +L A+ LGF Y+E + + L+ ++++KG K GA E+TEE
Sbjct: 115 GEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGGAVSATDGLSEELTEE 168
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 55 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA---------EMTEE 121
E +L A+ LGF Y+E + + L+ ++++KG K GA E+TEE
Sbjct: 115 GEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGGAVSATDGLSEELTEE 168
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 55 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA 116
E +L A+ LGF Y+E + + L+ ++++KG K GA
Sbjct: 115 GEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGGA 154
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 55 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA 116
E +L A+ LGF Y+E + + L+ ++++KG K GA
Sbjct: 115 GEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGGA 154
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 14/119 (11%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 55 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 114
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGA---------EMTEE 121
E +L A+ LGF Y+E + + L+ ++++KG K GA E+TEE
Sbjct: 115 GEDILFAMSTLGFDSYVEPL-----KLYLQKFREAMKGEKGIGGAVTATDGLSEELTEE 168
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K+ LPA+ ++++DA++ + EC EFI+ V+ E+++ C +E ++TI
Sbjct: 28 QDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTIN 87
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAA 125
+ +L A+ LGF +Y+E + Y Q E + G+ G E+ E + A
Sbjct: 88 GDDLLWAMTTLGFEDYVEPL-KVYLQRFREIEGERTGLGRPQTGGEVGEHQRDA 140
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 53/78 (67%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D +P A + +I++ +LPA +++ D+++ + EC E+I+ ++ E+NE C RE ++TI
Sbjct: 59 QDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTIT 118
Query: 72 PEHVLKALEVLGFGEYIE 89
E VL A+ LGF +YIE
Sbjct: 119 AEDVLWAMSKLGFDDYIE 136
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A +++I+K+ LP + ++ +DA+D + EC EFI+ ++SE+++ C +E ++T+
Sbjct: 22 QDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVN 81
Query: 72 PEHVLKALEVLGFGEYIE--EVYAAYEQHKLETMQDSLKGGKWSN 114
+ +L A+ LGF +Y+E ++Y A + + S K G SN
Sbjct: 82 GDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSN 126
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +P ++A+DA++ + EC EFI+ ++SE++E C +E ++TI
Sbjct: 53 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN 112
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQ-DSLKGGKWSNGAEMTEE 121
E +L A+ LGF Y+E + Y Q E M+ + GG + G ++EE
Sbjct: 113 GEDILFAMSTLGFDSYVEPL-KLYLQKFREAMKGEKGIGGTVTTGDGLSEE 162
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 5 DIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSR 64
D VG S +A LP A + ++IK++LP ++ A+ L +C VEF+ V E++E
Sbjct: 23 DGVGGSATNAELPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKA 82
Query: 65 EDKRTIAPEHVLKALEVLGFGEYIE 89
E +RT+APE L + LGF Y++
Sbjct: 83 EHRRTVAPEDYLGSFGDLGFDRYVD 107
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D +P A + +I+++ LP+ +++ DA++ + EC E+I+ V+ E+NE C RE ++TI
Sbjct: 60 QDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTIT 119
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHK-LETMQDS-LKG 109
E +L A+ LGF Y++ + +++ +ET + S L+G
Sbjct: 120 AEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRG 159
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 54/77 (70%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K++LP + ++++DA++ + EC EFI+ V+ E+++ C RE ++TI
Sbjct: 37 QDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTIN 96
Query: 72 PEHVLKALEVLGFGEYI 88
+ ++ A+ LGF +Y+
Sbjct: 97 GDDIIWAITTLGFEDYV 113
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75
LP A + +I+K LP + +++++A+D + +C EFI+ V+ E++E C++E ++TI E V
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 76 LKALEVLGFGEYIEEVYAAYEQHK 99
L AL LGF Y E + + +++
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYR 95
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis
thaliana GN=NFYB4 PE=1 SV=1
Length = 139
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 53/80 (66%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED LP A + +++K++LP++ +++++A+ + EC EFI+ V+ E++E C RE+++T+
Sbjct: 4 EDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVN 63
Query: 72 PEHVLKALEVLGFGEYIEEV 91
+ + AL LG Y + V
Sbjct: 64 GDDIWWALSTLGLDNYADAV 83
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 55/79 (69%)
Query: 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTI 70
++D LP A + +I+K+ LP + +VA+DA++ + +C EFI+ ++SE+++ C +E ++TI
Sbjct: 48 EQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTI 107
Query: 71 APEHVLKALEVLGFGEYIE 89
E ++ A+ LGF Y+E
Sbjct: 108 NGEDIIAAMVSLGFENYVE 126
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRT 69
+++D LP + +++K LPA +V++DA++ + EC EFI+ V+SE+ + C+ ++T
Sbjct: 21 AEQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKT 80
Query: 70 IAPEHVLKALEVLGFGEYIE--EVY-AAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAE 126
I E +L +L LGF Y E ++Y A Y Q + +++ + K TEEE+ AE
Sbjct: 81 INGEDILLSLHALGFENYAEVLKIYLAKYRQQ--QAIKNQMMYPKEDVEGSYTEEESRAE 138
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 52/76 (68%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I+K +LPA+ +V+++A++ + EC EFI+ V+ E+++ C +E ++T+
Sbjct: 52 QDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVN 111
Query: 72 PEHVLKALEVLGFGEY 87
+ + A+ LGF +Y
Sbjct: 112 GDDICWAMANLGFDDY 127
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP + +++K LP +V++DA++ + EC E I+ V+SE+++ C+ + ++TI
Sbjct: 38 QDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTIN 97
Query: 72 PEHVLKALEVLGFGEYIE--EVY-AAYEQHK 99
E +L +L LGF Y E ++Y A Y Q +
Sbjct: 98 GEDILISLHALGFENYAEVLKIYLAKYRQQQ 128
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 54/78 (69%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
+D LP A + +I++ +P + ++A+D+++ + EC EFI+ ++SE+++ C +E ++TI
Sbjct: 23 QDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTIN 82
Query: 72 PEHVLKALEVLGFGEYIE 89
+ ++ ++ LGF +Y+E
Sbjct: 83 GDDLIWSMGTLGFEDYVE 100
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 45 ECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQ 104
EC EFI+ ++SE++E C +E ++TI E +L A+ LGF Y+E + + L+ +
Sbjct: 3 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-----KLYLQKFR 57
Query: 105 DSLKGGKWSNGAEMT 119
+++KG K G T
Sbjct: 58 EAMKGEKGIGGTVTT 72
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A +T+IIKE LP V ++++A+ + F+ +S +N + ++T+
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLE 101
VL A+E + F ++ + A E ++ E
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRRE 95
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A +T+IIKE LP V ++++A+ + F+ +S +N + ++T+
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLE 101
VL A+E + F ++ + A E ++ E
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRRE 95
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A +T+IIKE LP V ++++A+ + F+ +S +N + ++T+
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLE 101
VL A+E + F ++ + A E ++ E
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRRE 95
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A +T+IIKE LP V ++++A+ + F+ +S +N + ++T+
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHK 99
VL A+E + F +I + A E ++
Sbjct: 66 ASDVLSAMEEMEFQRFITPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
ED +LP A +T+IIKE LP V ++++A+ + F+ +S +N + ++T+
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 72 PEHVLKALEVLGFGEYIEEVYAAYEQHKLE 101
VL A+E + F ++ + A E ++ E
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRRE 95
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 9 KSKE-----DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCS 63
KSKE D +LP++ + +++K +LP V ++A +I F++ ++S S E+ +
Sbjct: 5 KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIAT 64
Query: 64 REDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLK 108
+++ + P+ VL AL+ + + E+ + + E ++L + LK
Sbjct: 65 NNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAYELALKEKRLK 109
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRT 69
S +D PK+T+ + KE LP D +++DA + F++ ++S N ++
Sbjct: 31 SIDDLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKK 90
Query: 70 IAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMQ 104
I P+ V AL+ + +++ V + + + E Q
Sbjct: 91 ITPQDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQ 125
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIA 71
E LP A + +IIK LP V A++++ + + +I+ +++ S + S + TI+
Sbjct: 3 ESQDLPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTIS 62
Query: 72 PEHVLKALEVLGFGEY---IEEVYAA 94
P+ V +A+E + F + +EE AA
Sbjct: 63 PKDVFQAIEEIDFENFKPQLEEYLAA 88
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 16 LPKATMTKIIKEMLPA-------DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKR 68
P+AT+ K+ K ++ A ++ +A+D+ L F++ + ++ ++ E ++
Sbjct: 31 FPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGRK 90
Query: 69 TIAPEHVLKALEVLGFGEYIEEV 91
TI + +L ALE F +I EV
Sbjct: 91 TINAQDILSALEKAEFSGFIPEV 113
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 12 EDASLPKATMTKIIKEMLPADVR---VARDAQDLLIECCVEFINLVSSESNEVCSREDKR 68
+D PK+T+ + +E+ + + +DA L F+N + + E+ +DK+
Sbjct: 29 QDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHLLLFAREIAKSQDKK 88
Query: 69 TIAPEHVLKALEVLGFG-------EYIEEVYAAYEQHKLETM 103
+ + + VL AL+ +G + ++E AA EQ K E +
Sbjct: 89 SCSVDDVLSALDHIGHSALKGPVRDKLDEYQAAVEQRKKEKL 130
>sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4
PE=3 SV=1
Length = 204
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 12 EDASLPKATMTKIIKEMLPADVRVA---------RDAQDLLIECCVEFINLVSSESNEVC 62
+D P++ +T + K+ + V+ A +DA L F+N + + ++
Sbjct: 68 DDLLFPRSIITSLAKDAVHQAVQTAEQDPRVMLSKDASLALQRSSTVFVNHLLMHARQIA 127
Query: 63 SREDKRTIAPEHVLKALEVL---GFGEYIEEVYAAYEQ 97
D+++ + E VLKAL+ + GF + E YE+
Sbjct: 128 QSNDRKSCSGEDVLKALDQIGLAGFESVVRERVVEYEK 165
>sp|Q5F3G7|C1GLT_CHICK Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
OS=Gallus gallus GN=C1GALT1 PE=2 SV=1
Length = 366
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75
L K + + + + +DL + C+E IN+ + +S + RE PEH+
Sbjct: 216 LSKEALKRFVTAFKTNKCSHSSSIEDLALGKCMEIINVQAGDSRDTSGRETFHPFVPEHL 275
Query: 76 L 76
L
Sbjct: 276 L 276
>sp|P58088|TRMB_CAUCR tRNA (guanine-N(7)-)-methyltransferase OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=trmB PE=3 SV=2
Length = 226
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 22/125 (17%)
Query: 19 ATMTKIIKEMLPADVRV----ARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEH 74
A+ + ++E +VR+ ARD D L + C++ + ++ + +R I PE
Sbjct: 91 ASAVRHVEEQALKNVRIHEGDARDVVDWLPDACLDRVFIMFPDPWHKARHNKRRLIQPEF 150
Query: 75 VLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMFAEA 134
V K V+ G + +A W++ AE T E A+ FA+
Sbjct: 151 VAKLARVMKPGAALR--FAT----------------DWADYAEWTTERVLADPSFRFADE 192
Query: 135 RARMN 139
A N
Sbjct: 193 AADRN 197
>sp|B8GX04|TRMB_CAUCN tRNA (guanine-N(7)-)-methyltransferase OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=trmB PE=3 SV=1
Length = 226
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 22/125 (17%)
Query: 19 ATMTKIIKEMLPADVRV----ARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEH 74
A+ + ++E +VR+ ARD D L + C++ + ++ + +R I PE
Sbjct: 91 ASAVRHVEEQALKNVRIHEGDARDVVDWLPDACLDRVFIMFPDPWHKARHNKRRLIQPEF 150
Query: 75 VLKALEVLGFGEYIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMFAEA 134
V K V+ G + +A W++ AE T E A+ FA+
Sbjct: 151 VAKLARVMKPGAALR--FAT----------------DWADYAEWTTERVLADPSFRFADE 192
Query: 135 RARMN 139
A N
Sbjct: 193 AADRN 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,344,610
Number of Sequences: 539616
Number of extensions: 2183663
Number of successful extensions: 5908
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5835
Number of HSP's gapped (non-prelim): 75
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)