Query 031569
Match_columns 157
No_of_seqs 165 out of 534
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 01:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 2.9E-44 1E-48 286.9 11.5 131 7-139 7-137 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 1.5E-30 5E-35 197.8 10.2 103 10-112 4-106 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 1.5E-28 5.2E-33 176.5 10.8 91 10-100 3-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 5.3E-23 1.8E-27 143.0 7.3 68 14-82 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 3.3E-21 1.1E-25 150.6 7.3 75 14-89 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 6.3E-19 2.1E-23 119.3 8.1 66 15-82 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.7 1E-17 3.4E-22 124.3 7.2 92 10-103 2-95 (111)
8 1f1e_A Histone fold protein; a 99.7 2E-16 7E-21 123.5 8.2 70 10-81 77-146 (154)
9 4g92_C HAPE; transcription fac 99.6 5.5E-16 1.9E-20 116.0 7.3 78 11-89 37-114 (119)
10 2byk_A Chrac-16; nucleosome sl 99.6 2.4E-16 8.2E-21 121.2 2.8 92 11-103 15-110 (140)
11 1n1j_B NF-YC; histone-like PAI 99.6 1.5E-15 5E-20 109.8 6.4 79 11-90 15-93 (97)
12 2hue_C Histone H4; mini beta s 99.6 6.2E-15 2.1E-19 104.1 7.1 74 12-87 7-80 (84)
13 1id3_B Histone H4; nucleosome 99.5 9.7E-15 3.3E-19 106.8 7.3 74 12-87 25-98 (102)
14 1ku5_A HPHA, archaeal histon; 99.5 2.2E-14 7.5E-19 97.7 7.8 64 15-80 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.5 5.2E-14 1.8E-18 102.7 6.9 75 11-87 25-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.5 6.8E-14 2.3E-18 102.2 7.2 74 12-87 26-99 (103)
17 1jfi_A Transcription regulator 99.3 4.4E-12 1.5E-16 91.8 6.6 80 11-91 7-86 (98)
18 2hue_B Histone H3; mini beta s 98.9 8.4E-09 2.9E-13 72.0 8.5 71 13-83 1-74 (77)
19 3vh5_A CENP-S; histone fold, c 98.8 6.5E-09 2.2E-13 79.9 6.2 77 20-96 24-102 (140)
20 1taf_B TFIID TBP associated fa 98.7 9.9E-08 3.4E-12 65.5 8.2 65 14-80 5-69 (70)
21 3nqj_A Histone H3-like centrom 98.6 1E-07 3.6E-12 67.2 8.0 70 14-83 2-76 (82)
22 2yfv_A Histone H3-like centrom 98.6 6.2E-08 2.1E-12 70.6 6.6 69 11-79 23-97 (100)
23 3v9r_A MHF1, uncharacterized p 98.6 1E-07 3.5E-12 68.3 7.5 62 20-81 17-79 (90)
24 4dra_A Centromere protein S; D 98.6 7.6E-08 2.6E-12 71.6 6.5 75 20-100 32-107 (113)
25 1tzy_C Histone H3; histone-fol 98.5 2.4E-07 8E-12 70.9 7.8 72 12-83 59-133 (136)
26 3b0b_B CENP-S, centromere prot 98.5 1.9E-07 6.4E-12 68.8 6.5 63 20-82 24-87 (107)
27 3r45_A Histone H3-like centrom 98.5 1.9E-07 6.5E-12 72.9 6.5 71 11-81 73-148 (156)
28 3nqu_A Histone H3-like centrom 98.5 2.2E-07 7.6E-12 71.4 5.8 73 11-83 57-134 (140)
29 1taf_A TFIID TBP associated fa 98.3 2.1E-06 7.1E-11 58.5 7.6 61 19-81 5-65 (68)
30 2nqb_C Histone H2A; nucleosome 98.3 1.8E-06 6.1E-11 64.8 7.9 68 13-81 21-88 (123)
31 1f66_C Histone H2A.Z; nucleoso 98.3 1.8E-06 6E-11 65.3 7.7 69 13-81 25-93 (128)
32 1tzy_A Histone H2A-IV; histone 98.3 2.2E-06 7.4E-11 64.9 7.9 68 13-81 23-90 (129)
33 2f8n_G Core histone macro-H2A. 98.3 2.2E-06 7.7E-11 64.0 7.9 68 13-81 20-87 (120)
34 1id3_C Histone H2A.1; nucleoso 98.3 2.1E-06 7.3E-11 65.0 7.3 69 12-81 22-90 (131)
35 2ly8_A Budding yeast chaperone 98.2 1.7E-06 5.8E-11 65.0 5.8 55 33-87 63-117 (121)
36 2nqb_D Histone H2B; nucleosome 98.2 3.2E-06 1.1E-10 63.6 7.1 67 19-86 37-103 (123)
37 2f8n_K Histone H2A type 1; nuc 98.2 4.3E-06 1.5E-10 64.7 7.6 68 13-81 42-109 (149)
38 1tzy_B Histone H2B; histone-fo 98.2 4.1E-06 1.4E-10 63.3 7.1 67 19-86 40-106 (126)
39 2jss_A Chimera of histone H2B. 98.1 9.7E-06 3.3E-10 64.6 7.4 70 12-81 102-171 (192)
40 3b0b_C CENP-X, centromere prot 98.0 3.8E-05 1.3E-09 53.9 8.1 72 11-82 4-76 (81)
41 4dra_E Centromere protein X; D 98.0 4.5E-05 1.5E-09 53.9 8.5 71 12-82 9-80 (84)
42 2jss_A Chimera of histone H2B. 97.9 3.2E-05 1.1E-09 61.5 7.7 63 19-82 7-69 (192)
43 2l5a_A Histone H3-like centrom 97.8 1E-05 3.5E-10 66.7 4.0 53 32-84 176-228 (235)
44 1bh9_B TAFII28; histone fold, 97.7 0.00014 4.9E-09 51.6 7.7 67 15-83 16-83 (89)
45 1h3o_B Transcription initiatio 97.7 0.0002 6.8E-09 49.7 8.1 66 15-81 5-70 (76)
46 2l5a_A Histone H3-like centrom 97.1 0.00065 2.2E-08 56.0 5.8 72 12-83 8-85 (235)
47 3v9r_B MHF2, uncharacterized p 96.3 0.0083 2.9E-07 42.6 5.6 49 16-64 2-51 (88)
48 2ly8_A Budding yeast chaperone 94.6 0.19 6.6E-06 37.4 8.2 84 16-101 2-94 (121)
49 3uk6_A RUVB-like 2; hexameric 90.7 0.95 3.3E-05 36.6 7.9 70 16-85 259-334 (368)
50 2v1u_A Cell division control p 85.3 3.1 0.00011 33.2 7.6 72 18-89 203-283 (387)
51 2c9o_A RUVB-like 1; hexameric 84.4 2.3 7.8E-05 36.4 6.8 66 16-81 366-436 (456)
52 3ksy_A SOS-1, SON of sevenless 83.7 3.1 0.0001 40.0 7.9 68 12-81 101-168 (1049)
53 1fnn_A CDC6P, cell division co 83.0 4 0.00014 32.7 7.4 76 16-91 193-283 (389)
54 2qby_A CDC6 homolog 1, cell di 82.2 7.2 0.00025 30.9 8.5 76 16-91 197-281 (386)
55 1khy_A CLPB protein; alpha hel 76.7 3 0.0001 29.7 4.2 37 34-82 5-41 (148)
56 2qby_B CDC6 homolog 3, cell di 75.0 14 0.00047 29.6 8.2 73 15-89 196-277 (384)
57 2y1q_A CLPC N-domain, negative 74.8 3.1 0.00011 29.8 3.9 38 34-83 5-42 (150)
58 3fh2_A Probable ATP-dependent 74.5 3.7 0.00013 29.6 4.3 37 34-82 6-42 (146)
59 3fes_A ATP-dependent CLP endop 71.7 4 0.00014 29.4 3.9 38 34-83 7-44 (145)
60 3kw6_A 26S protease regulatory 71.5 3.4 0.00012 26.8 3.2 32 51-82 42-73 (78)
61 1k6k_A ATP-dependent CLP prote 70.9 3.6 0.00012 29.2 3.4 33 35-79 2-34 (143)
62 2r44_A Uncharacterized protein 69.7 20 0.00069 28.4 8.0 51 32-82 224-297 (331)
63 1g8p_A Magnesium-chelatase 38 66.2 14 0.00049 29.2 6.4 51 32-82 265-322 (350)
64 3aji_B S6C, proteasome (prosom 64.0 7.4 0.00025 25.4 3.6 33 51-83 40-72 (83)
65 2f3n_A SH3 and multiple ankyri 62.8 5.6 0.00019 26.1 2.8 23 70-92 5-27 (76)
66 3fes_A ATP-dependent CLP endop 61.1 11 0.00039 26.9 4.5 40 32-83 79-118 (145)
67 3k1j_A LON protease, ATP-depen 60.0 17 0.00058 32.2 6.3 49 33-81 313-374 (604)
68 2dzn_B 26S protease regulatory 59.3 8.9 0.0003 25.1 3.3 28 56-83 42-69 (82)
69 3bq7_A Diacylglycerol kinase d 59.1 7 0.00024 25.9 2.8 24 69-92 9-32 (81)
70 2chg_A Replication factor C sm 58.5 14 0.00048 26.3 4.6 64 15-80 160-224 (226)
71 1ixs_A Holliday junction DNA h 57.5 24 0.00082 22.6 5.1 14 73-86 18-31 (62)
72 1njg_A DNA polymerase III subu 57.4 17 0.00059 26.0 5.0 63 16-79 185-248 (250)
73 1k6k_A ATP-dependent CLP prote 57.2 30 0.001 24.2 6.1 37 33-81 78-114 (143)
74 3vlf_B 26S protease regulatory 57.2 9.2 0.00031 25.6 3.2 34 51-84 40-73 (88)
75 3fh2_A Probable ATP-dependent 57.1 16 0.00054 26.1 4.7 40 32-83 79-118 (146)
76 3zri_A CLPB protein, CLPV; cha 54.9 9.8 0.00033 28.8 3.3 37 34-82 24-60 (171)
77 1uxc_A FRUR (1-57), fructose r 53.0 20 0.00068 22.9 4.2 36 14-50 10-45 (65)
78 2gle_A Neurabin-1; SAM domain, 52.9 7.6 0.00026 25.0 2.1 22 70-91 7-28 (74)
79 2krk_A 26S protease regulatory 52.9 12 0.0004 25.1 3.2 31 52-82 51-81 (86)
80 1in4_A RUVB, holliday junction 47.1 35 0.0012 27.5 5.7 67 19-85 183-253 (334)
81 1kw4_A Polyhomeotic; SAM domai 47.1 14 0.00048 25.2 2.8 24 69-92 16-40 (89)
82 3qao_A LMO0526 protein, MERR-l 46.4 29 0.00099 27.7 5.0 116 13-140 58-175 (249)
83 3h4m_A Proteasome-activating n 41.9 22 0.00074 27.4 3.5 33 50-82 226-258 (285)
84 2y1q_A CLPC N-domain, negative 41.6 33 0.0011 24.1 4.3 37 33-81 78-114 (150)
85 1z4h_A TORI, TOR inhibition pr 41.6 13 0.00045 23.4 1.9 26 13-38 19-45 (66)
86 3zri_A CLPB protein, CLPV; cha 41.4 34 0.0011 25.8 4.4 38 32-81 96-134 (171)
87 5pal_A Parvalbumin; calcium-bi 41.1 45 0.0015 21.5 4.6 70 16-96 6-87 (109)
88 1ofh_A ATP-dependent HSL prote 40.8 61 0.0021 24.8 6.0 53 32-84 232-301 (310)
89 2d8c_A Phosphatidylcholine:cer 40.6 7.9 0.00027 27.1 0.7 23 69-91 19-41 (97)
90 1bh9_A TAFII18; histone fold, 40.4 52 0.0018 19.9 4.4 39 21-60 6-44 (45)
91 1w5s_A Origin recognition comp 38.1 1.2E+02 0.0039 24.2 7.5 68 15-83 214-294 (412)
92 1jr3_A DNA polymerase III subu 37.9 50 0.0017 26.1 5.2 68 15-83 177-245 (373)
93 1hqc_A RUVB; extended AAA-ATPa 37.7 56 0.0019 25.4 5.4 69 16-84 168-240 (324)
94 1khy_A CLPB protein; alpha hel 36.9 38 0.0013 23.7 3.9 36 33-80 81-116 (148)
95 1v85_A Similar to ring finger 35.8 24 0.00083 23.8 2.6 25 68-92 18-44 (91)
96 3pxg_A Negative regulator of g 35.6 59 0.002 27.8 5.6 38 34-83 5-42 (468)
97 1wwi_A Hypothetical protein TT 35.6 81 0.0028 23.9 5.7 58 16-75 3-60 (148)
98 3bos_A Putative DNA replicatio 35.0 30 0.001 25.2 3.2 59 20-80 178-241 (242)
99 3bs7_A Protein aveugle; sterIl 34.9 24 0.00084 22.7 2.4 23 70-92 6-30 (78)
100 2chq_A Replication factor C sm 34.8 79 0.0027 24.2 5.8 68 15-84 160-228 (319)
101 1lv7_A FTSH; alpha/beta domain 34.6 35 0.0012 26.0 3.6 33 51-83 221-253 (257)
102 1sxj_D Activator 1 41 kDa subu 33.4 41 0.0014 26.4 3.9 69 15-84 191-265 (353)
103 2pvb_A Protein (parvalbumin); 32.3 98 0.0034 19.7 5.5 69 16-95 6-86 (108)
104 2ns0_A Hypothetical protein; r 31.8 99 0.0034 21.3 5.2 33 66-98 21-53 (85)
105 3li6_A Calcium-binding protein 31.5 67 0.0023 18.4 3.9 28 58-85 5-32 (66)
106 1r4v_A Hypothetical protein AQ 31.3 1E+02 0.0035 23.9 5.7 63 11-75 20-84 (171)
107 2i7a_A Calpain 13; calcium-dep 31.2 1.5E+02 0.0051 21.4 8.9 74 11-85 16-111 (174)
108 4b4t_L 26S protease subunit RP 30.0 39 0.0013 29.4 3.5 31 51-81 391-421 (437)
109 2e8o_A SAM domain and HD domai 30.0 21 0.0007 24.7 1.4 23 69-91 29-53 (103)
110 3pvs_A Replication-associated 29.4 1.2E+02 0.0043 25.8 6.6 68 15-83 164-245 (447)
111 3pfi_A Holliday junction ATP-d 29.2 52 0.0018 25.9 3.9 68 18-85 186-257 (338)
112 1pva_A Parvalbumin; calcium bi 28.9 1.1E+02 0.0039 19.4 5.6 71 15-96 6-88 (110)
113 2l8n_A Transcriptional repress 28.7 53 0.0018 20.9 3.2 33 14-50 19-51 (67)
114 1iqp_A RFCS; clamp loader, ext 28.6 1.4E+02 0.0047 22.9 6.2 66 15-82 168-234 (327)
115 3fs7_A Parvalbumin, thymic; ca 28.5 1.2E+02 0.004 19.3 5.7 70 15-95 6-87 (109)
116 4b4t_M 26S protease regulatory 28.4 40 0.0014 29.3 3.3 33 50-82 390-422 (434)
117 1pk1_B Sex COMB on midleg CG94 28.3 36 0.0012 23.2 2.4 24 69-92 16-41 (89)
118 4b4t_I 26S protease regulatory 28.3 43 0.0015 29.4 3.5 32 50-81 391-422 (437)
119 3vlv_A ALGQ1; sugar binding pr 28.1 1.6E+02 0.0056 24.6 7.1 70 32-103 423-494 (502)
120 1tiz_A Calmodulin-related prot 27.9 84 0.0029 17.9 3.9 37 59-95 7-43 (67)
121 1jr3_D DNA polymerase III, del 27.1 59 0.002 25.9 3.9 67 15-81 141-208 (343)
122 3bs5_B Connector enhancer of k 27.0 47 0.0016 21.4 2.8 24 70-93 7-32 (80)
123 4a4j_A Pacszia, cation-transpo 26.6 27 0.00093 20.7 1.4 18 68-85 48-65 (69)
124 3h4s_E KCBP interacting Ca2+-b 26.6 87 0.003 21.4 4.3 28 57-84 44-71 (135)
125 1qvr_A CLPB protein; coiled co 26.5 51 0.0017 30.4 3.8 36 34-81 5-40 (854)
126 3bs5_A Protein aveugle; sterIl 26.1 40 0.0014 23.5 2.4 24 69-92 25-50 (106)
127 4b4t_H 26S protease regulatory 25.9 45 0.0015 29.5 3.2 31 51-81 419-449 (467)
128 4b4t_J 26S protease regulatory 25.9 51 0.0018 28.5 3.5 32 50-81 357-388 (405)
129 4b4t_K 26S protease regulatory 25.8 37 0.0013 29.4 2.6 31 51-81 383-413 (428)
130 3pxg_A Negative regulator of g 25.4 1.4E+02 0.0048 25.4 6.2 56 15-82 54-115 (468)
131 3pxi_A Negative regulator of g 25.3 1E+02 0.0035 27.8 5.6 37 34-82 5-41 (758)
132 1r6b_X CLPA protein; AAA+, N-t 25.0 56 0.0019 29.4 3.7 24 57-80 12-35 (758)
133 2qz4_A Paraplegin; AAA+, SPG7, 24.8 27 0.00092 26.3 1.4 32 51-82 218-249 (262)
134 1rwy_A Parvalbumin alpha; EF-h 24.7 1.4E+02 0.0047 18.9 5.0 56 16-82 6-70 (109)
135 1bu3_A Calcium-binding protein 24.7 1.4E+02 0.0048 18.9 7.3 70 15-95 6-87 (109)
136 1exr_A Calmodulin; high resolu 24.6 1.6E+02 0.0055 19.6 5.8 29 57-85 87-115 (148)
137 3fwb_A Cell division control p 24.4 1.6E+02 0.0055 19.6 8.4 38 57-94 100-137 (161)
138 1sxj_B Activator 1 37 kDa subu 24.2 1.2E+02 0.0042 23.1 5.2 68 15-84 165-233 (323)
139 3iwl_A Copper transport protei 23.5 35 0.0012 20.5 1.5 17 69-85 45-61 (68)
140 2obh_A Centrin-2; DNA repair c 23.2 1.7E+02 0.0059 19.5 5.8 81 15-95 38-121 (143)
141 1ixz_A ATP-dependent metallopr 23.0 62 0.0021 24.4 3.2 28 53-80 227-254 (254)
142 1yfs_A Alanyl-tRNA synthetase; 22.6 3.4E+02 0.012 24.1 8.2 29 64-92 373-402 (465)
143 1r6b_X CLPA protein; AAA+, N-t 22.0 1.5E+02 0.0051 26.6 5.9 38 33-82 78-115 (758)
144 3f8t_A Predicted ATPase involv 21.9 2.6E+02 0.009 25.0 7.4 67 15-81 393-482 (506)
145 3dxs_X Copper-transporting ATP 21.8 34 0.0012 20.6 1.2 18 68-85 49-66 (74)
146 3omb_A Extracellular solute-bi 21.8 1.5E+02 0.0051 25.0 5.6 70 28-99 461-534 (535)
147 2joj_A Centrin protein; N-term 21.7 95 0.0033 18.3 3.4 36 59-94 13-48 (77)
148 1iy2_A ATP-dependent metallopr 21.7 66 0.0023 24.8 3.2 27 54-80 252-278 (278)
149 2ovk_C Myosin catalytic light 21.3 1.7E+02 0.0057 19.7 5.0 29 57-85 89-117 (159)
150 3pxi_A Negative regulator of g 21.1 1.8E+02 0.006 26.2 6.2 56 15-82 54-115 (758)
151 2kz2_A Calmodulin, CAM; TR2C, 20.9 1.3E+02 0.0045 19.2 4.1 36 60-95 36-71 (94)
152 2ean_A Connector enhancer of k 20.8 58 0.002 21.2 2.3 24 69-92 10-35 (83)
153 2ktg_A Calmodulin, putative; e 20.2 1E+02 0.0036 18.6 3.4 38 58-95 19-56 (85)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=100.00 E-value=2.9e-44 Score=286.87 Aligned_cols=131 Identities=44% Similarity=0.778 Sum_probs=121.8
Q ss_pred CCCCcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchh
Q 031569 7 VGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (157)
Q Consensus 7 ~g~~~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~ 86 (157)
.+.+++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++
T Consensus 7 ~~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~ 85 (179)
T 1jfi_B 7 SSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGS 85 (179)
T ss_dssp -----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGG
T ss_pred CCCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHH
Confidence 346789999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 031569 87 YIEEVYAAYEQHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMFAEARARMN 139 (157)
Q Consensus 87 yv~~l~~~l~~~k~~~k~~r~kk~~k~~~~g~~eEel~~~Q~eLF~~ar~~~~ 139 (157)
|+++|+.+|..||+.++ .|+++.+|++++|||+|||+++|++||++||+++.
T Consensus 86 fv~~lk~~L~~yre~~~-~kkr~~~K~~~sg~~~Eel~~~Qqelf~~Ar~~~~ 137 (179)
T 1jfi_B 86 YISEVKEVLQECKTVAL-KRRKASSRLENLGIPEEELLRQQQELFAKARQQQA 137 (179)
T ss_dssp GHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCccccchhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 56677789999999999999999999999999874
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.5e-30 Score=197.85 Aligned_cols=103 Identities=22% Similarity=0.391 Sum_probs=87.6
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
+.+++.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+.+||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCCC
Q 031569 90 EVYAAYEQHKLETMQDSLKGGKW 112 (157)
Q Consensus 90 ~l~~~l~~~k~~~k~~r~kk~~k 112 (157)
+|+.+|..||+.++.++..+.++
T Consensus 84 ~lk~~l~~yr~~~~~kk~~~~~~ 106 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKESKASK 106 (128)
T ss_dssp HHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHhhhhhhhcc
Confidence 99999999999988655444443
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=1.5e-28 Score=176.52 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=85.7
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
..+++.||+|+|.||||+.+|++.+||+||+.+|++||++||+||+++|++.|.+++||||+++||..||+.|||.+|++
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~ 82 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVE 82 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHH
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 031569 90 EVYAAYEQHKL 100 (157)
Q Consensus 90 ~l~~~l~~~k~ 100 (157)
+++..|.+||+
T Consensus 83 ~~~~~l~~~r~ 93 (93)
T 1n1j_A 83 PLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=5.3e-23 Score=143.03 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=65.0
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
..||+|+|.||||+++| +++||+||+++|++||++||++|+++|+++|.+++||||+++||..|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999 799999999999999999999999999999999999999999999999764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=3.3e-21 Score=150.60 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=71.8
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
..||+++|.||||+.||. .+||+||++.|++|+.+|+.+|+++|++.|.+.+||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 369999999999999995 999999999999999999999999999999999999999999999999999999864
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.78 E-value=6.3e-19 Score=119.35 Aligned_cols=66 Identities=27% Similarity=0.357 Sum_probs=63.9
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
+||+++|.||||+. ++.+||+||..+|++|+++||.+|+++|+..|.+.+||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 4899999999999999999999999999999999999999999999999887
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.72 E-value=1e-17 Score=124.34 Aligned_cols=92 Identities=15% Similarity=0.230 Sum_probs=79.3
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
..+|..||+++|.||++.. +..+||+|+.++|.+|+.+|+..|+..|+..|++.|||||+++||+.||+..|+..|+.
T Consensus 2 ~~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~ 79 (111)
T 3b0c_T 2 STREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKM 79 (111)
T ss_dssp --------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTB
T ss_pred CCCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccc
Confidence 3578899999999999998 37999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--HHHhh
Q 031569 90 EVYAAYEQH--KLETM 103 (157)
Q Consensus 90 ~l~~~l~~~--k~~~k 103 (157)
++...+..| ++..+
T Consensus 80 ~l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 80 PLHVLVERHLPLEYRK 95 (111)
T ss_dssp CHHHHHHHHSCHHHHH
T ss_pred cHHHHHHHhCcHHHHH
Confidence 999999988 55433
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.66 E-value=2e-16 Score=123.47 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=66.7
Q ss_pred CcccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 10 SKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 10 ~~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..+++.||+++|.||||+. +..+||.||++.+++|+.+|+.+|+++|++.|.+.+||||+++||+.||+.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4578999999999999999 478999999999999999999999999999999999999999999999975
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.62 E-value=5.5e-16 Score=116.00 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=70.9
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
.....||.|.|.||||.. |+..+||+||..+|.+||+.||.+|+..|+..|..++||||+++||..|+...+.-+|+.
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 345689999999999965 888999999999999999999999999999999999999999999999998877666653
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.60 E-value=2.4e-16 Score=121.24 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=61.2
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHh-hhcCCCccChhhHHhhhhhcCchhhHH
Q 031569 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVC-SREDKRTIAPEHVLKALEVLGFGEYIE 89 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia-~~~~RKTI~~edVl~AL~~LgF~~yv~ 89 (157)
...+.||.|.|.||||.. |+..+||++|..+|.+||..||.+|+..|+..| ...+||||++.||..|+....+.+|+.
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 467899999999999987 878899999999999999999999999999999 999999999999999998665555554
Q ss_pred ---HHHHHHHHHHHHhh
Q 031569 90 ---EVYAAYEQHKLETM 103 (157)
Q Consensus 90 ---~l~~~l~~~k~~~k 103 (157)
+.+..+.+|++..+
T Consensus 94 divP~ki~l~~~~~~~~ 110 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLR 110 (140)
T ss_dssp TTSCSCC----------
T ss_pred ccccchhhHHHHHHHHH
Confidence 66788889987766
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.59 E-value=1.5e-15 Score=109.83 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHHH
Q 031569 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEE 90 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~ 90 (157)
.....||.|.|.||||.. |+..+||+||..+|.+|+..||.+|+..|...|...+||||+++||..|+...++.+|+.+
T Consensus 15 ~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp -----CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 456799999999999987 7667999999999999999999999999999999999999999999999999999888643
No 12
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.56 E-value=6.2e-15 Score=104.08 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=69.2
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~y 87 (157)
....||+++|.||++.... .+||+|+.+.+.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||+-|
T Consensus 7 ~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 7 NIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 3457999999999999863 7899999999999999999999999999999999999999999999999998765
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.54 E-value=9.7e-15 Score=106.79 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=69.3
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~y 87 (157)
....||+++|.||++.... .+||.|+.+.|.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||.-|
T Consensus 25 ~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 25 NIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp CGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred ccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 3557999999999999863 7899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.53 E-value=2.2e-14 Score=97.67 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=61.4
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
.||+++|.||+|+. +..+||+++..+|++|+..|+..|+..|+..|.+.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 37899999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.48 E-value=5.2e-14 Score=102.73 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=69.7
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhh
Q 031569 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~y 87 (157)
+....||+++|.||++.... .+||.|+.+.|.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||+-|
T Consensus 25 ~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 34556999999999999864 6999999999999999999999999999999999999999999999999998765
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.48 E-value=6.8e-14 Score=102.19 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~y 87 (157)
....||+++|.||++.... .+||.|+.+.|.+|+.+|+..|+.+|...|++.+||||+++||..||+.+||+-|
T Consensus 26 ~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 26 NIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ----CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 3556999999999999864 6999999999999999999999999999999999999999999999999998766
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.29 E-value=4.4e-12 Score=91.79 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=60.1
Q ss_pred cccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHHH
Q 031569 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEE 90 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~ 90 (157)
.-...||.+.|.||||. .|+..+||.+|..++.+++..|+.+|+..|...|...+||||+++||..|+..-+.-+|+.+
T Consensus 7 k~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp ---CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred ccCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 34578999999999996 56667999999999999999999999999999999999999999999999998777777655
Q ss_pred H
Q 031569 91 V 91 (157)
Q Consensus 91 l 91 (157)
+
T Consensus 86 i 86 (98)
T 1jfi_A 86 R 86 (98)
T ss_dssp -
T ss_pred c
Confidence 4
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.88 E-value=8.4e-09 Score=72.04 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=63.9
Q ss_pred cccCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 13 DASLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP---~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
++.||+++++|+|+++.. .+.+++.+|..+|++++..|+.-|...||..|.+.||+||.+.||--|..--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999932 47999999999999999999999999999999999999999999988875443
No 19
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.81 E-value=6.5e-09 Score=79.90 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc-CchhhHHHHHHHHH
Q 031569 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL-GFGEYIEEVYAAYE 96 (157)
Q Consensus 20 ~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L-gF~~yv~~l~~~l~ 96 (157)
+|.||+++... .++.||.++..+|.+.+..|+.-|+..+...|.+.|||||+++||.-+++.- ++..|+......+.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~el~ 102 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSDELA 102 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 68899998754 3789999999999999999999999999999999999999999999999875 34444444444443
No 20
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.67 E-value=9.9e-08 Score=65.45 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=60.8
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
-.||.++|.+|++... --++|.|+...|.+-++..+..|+.+|...+.+.+|||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 3699999999999874 3489999999999999999999999999999999999999999999985
No 21
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.65 E-value=1e-07 Score=67.19 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred ccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 14 ASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP-----~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
+-||++++.|+|+++.. .+.+++.+|..+|++++..|+.-|...||..|.+.+|+||.+.||--|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 46899999999999872 36899999999999999999999999999999999999999999987765433
No 22
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.63 E-value=6.2e-08 Score=70.62 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred cccccCcHHHHHHHHHhhCC------CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhh
Q 031569 11 KEDASLPKATMTKIIKEMLP------ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP------~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL 79 (157)
..++.||++++.|+|+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|.
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 46789999999999999973 2789999999999999999999999999999999999999999997765
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1e-07 Score=68.29 Aligned_cols=62 Identities=8% Similarity=0.181 Sum_probs=58.7
Q ss_pred HHHHHHHhhCCCC-ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 20 TMTKIIKEMLPAD-VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 20 ~V~riiKe~LP~~-~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
+|.||+.+.++.. +.||.++..+|.+.+..|+.-|+..+...|++.|||||+++||.-+++.
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 6889999999865 9999999999999999999999999999999999999999999999876
No 24
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.60 E-value=7.6e-08 Score=71.59 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=64.0
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHHHHHH
Q 031569 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQH 98 (157)
Q Consensus 20 ~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l~~~ 98 (157)
+|.||+++... .++.||+++..+|.+.+..|+.-|+..+...|.+.|||||+++||.-+++.- +.|...+.+|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 68999998865 3688999999999999999999999999999999999999999999999874 3444444444
Q ss_pred HH
Q 031569 99 KL 100 (157)
Q Consensus 99 k~ 100 (157)
.+
T Consensus 106 ~~ 107 (113)
T 4dra_A 106 SE 107 (113)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.54 E-value=2.4e-07 Score=70.91 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=65.4
Q ss_pred ccccCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 12 EDASLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP---~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
.++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..--|
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 5789999999999999932 47999999999999999999999999999999999999999999988865433
No 26
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.52 E-value=1.9e-07 Score=68.84 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=58.2
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 20 ~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
+|.||+++... .+.++|+++..+|.+.+..|+.-|+..|...|.+.|||||+++||.-|++..
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 58899998763 3589999999999999999999999999999999999999999999999885
No 27
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.50 E-value=1.9e-07 Score=72.87 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=63.9
Q ss_pred cccccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 11 KEDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-----~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..-
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 45789999999999999873 268999999999999999999999999999999999999999999887644
No 28
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.46 E-value=2.2e-07 Score=71.37 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=65.3
Q ss_pred cccccCcHHHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 11 KEDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-----~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
..++.||++.+.|||+++.. .+.+++.+|..+|+++++.|+.-|...||..|.+.+|+||.+.||--|..--|
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 45789999999999999872 36899999999999999999999999999999999999999999988876544
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.33 E-value=2.1e-06 Score=58.51 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 19 A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..|.+|+|+.. --+++.++...|.+.+..++.-|..+|...|.+.|||||+.+||.-|++.
T Consensus 5 ~~i~~iLk~~G--~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN--VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT--CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 36899999975 35899999999999999999999999999999999999999999998864
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.33 E-value=1.8e-06 Score=64.80 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.+.||.+.|.|+|++.-. ..+|+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 21 gL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 589999999999999743 35999999999999999999999999999999999999999999999874
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.32 E-value=1.8e-06 Score=65.29 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=63.6
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.+.||.+.|.|+|++.-....||+.+|...|..+...|...|...|...|...+|++|+|+||..|+..
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 689999999999999764346999999999999999999999999999999999999999999999864
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.30 E-value=2.2e-06 Score=64.87 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=63.0
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.+.||.+.|.|+|++.-. ..+|+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 23 gLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 689999999999999743 45999999999999999999999999999999999999999999999873
No 33
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.30 E-value=2.2e-06 Score=64.01 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+...|...|...|...|...+|++|+|+||..|+..
T Consensus 20 gLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 589999999999999854 46999999999999999999999999999999999999999999999873
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.27 E-value=2.1e-06 Score=65.04 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=63.4
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
-.+.||.+.|.|+|++.-. ..+|+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4689999999999999743 35999999999999999999999999999999999999999999999874
No 35
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.7e-06 Score=64.99 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhh
Q 031569 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEY 87 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~y 87 (157)
-|||.++.+.+.....+|+.-|...|...|++.+||||+++||.-||+..|-.=|
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 4588888888888888888888899999999999999999999999999886543
No 36
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.22 E-value=3.2e-06 Score=63.62 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=61.1
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchh
Q 031569 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (157)
Q Consensus 19 A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~ 86 (157)
..|+|++|++-| +..||.+|...|+.....+..-|+.+|..+|...+|+||++.||-.|+.-|==++
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 568999999988 7999999999999999999999999999999999999999999999986654443
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.19 E-value=4.3e-06 Score=64.73 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=62.9
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.+.||.+.|.|+||+.-. ..||+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 42 gLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 689999999999999743 45999999999999999999999999999999999999999999999873
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.18 E-value=4.1e-06 Score=63.27 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=61.2
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchh
Q 031569 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (157)
Q Consensus 19 A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~ 86 (157)
..|+|++|++-| +..||.+|...|+.....+..-|+.+|..+|..++|+||++.||-.|+.-|==++
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 469999999988 7999999999999999999999999999999999999999999999986654443
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.06 E-value=9.7e-06 Score=64.58 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=63.6
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
-.+.||.+.|.|+||+.-....+|+.+|...|..+...|+..|...|...|...+|++|+|+||..|+..
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3689999999999999743246999999999999999999999999999999999999999999999863
No 40
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.97 E-value=3.8e-05 Score=53.88 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=63.4
Q ss_pred cccccCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 11 KEDASLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.++..+|..+|.||++.... +..+|++||..++.+....||.--...|...++.++-..|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45678999999999999987 5789999999999999999999999999999999999999999998876554
No 41
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.96 E-value=4.5e-05 Score=53.92 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=63.4
Q ss_pred ccccCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 12 EDASLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
-+..+|..+|.||++...- ++.+||+||..++.+....||.--...|...++.++-.+|..+|+-+.+-.|
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 4678999999999998885 6899999999999999999999999999999999999999999998876554
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.90 E-value=3.2e-05 Score=61.55 Aligned_cols=63 Identities=16% Similarity=0.382 Sum_probs=59.2
Q ss_pred HHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 19 ATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 19 A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||++.||-.|++-+
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 469999999988 799999999999999999999999999999999999999999999998643
No 43
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=1e-05 Score=66.74 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=50.4
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
--|||.++.+.+.....+|+.-|...|..+|++.+||||+++||.-||+.+|-
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999998763
No 44
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.71 E-value=0.00014 Score=51.63 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=61.1
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCC-CccChhhHHhhhhhcC
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDK-RTIAPEHVLKALEVLG 83 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~R-KTI~~edVl~AL~~Lg 83 (157)
.||++.|.|||...+ +..++.+...+|.-.+.+||--|..+|.+++...+. ..|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 799999999999998 578999999999999999999999999999997754 4899999999987664
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.70 E-value=0.0002 Score=49.65 Aligned_cols=66 Identities=20% Similarity=0.395 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
-|++..++.+|+++=| +..+..|+.++|.+.|.+||.-+++.|-..|++.+-.||...||.-.|+.
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999876 89999999999999999999999999999999999999999999887764
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00065 Score=55.98 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=62.5
Q ss_pred ccccCcHHHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 12 EDASLPKATMTKIIKEMLPA------DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~------~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
..+-+|+.+.+|+++++..+ +.+++..|..+|++++.-|+--|...+|-.|.+.+|.||.+.|+--|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 45789999999999998642 6899999999999999999999999999999999999999999988865444
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0083 Score=42.58 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 031569 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSR 64 (157)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~ 64 (157)
||+.+|.||++...- ++.||++||..++.+....||.---..|.+..+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999997775 5799999999999999999998777777655443
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.19 Score=37.35 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHhhC----C--CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhc---CCCccChhhHHhhhhhcCchh
Q 031569 16 LPKATMTKIIKEML----P--ADVRVARDAQDLLIECCVEFINLVSSESNEVCSRE---DKRTIAPEHVLKALEVLGFGE 86 (157)
Q Consensus 16 LP~A~V~riiKe~L----P--~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~---~RKTI~~edVl~AL~~LgF~~ 86 (157)
+|+.+.+|+++++. + .+.+++.+|..+|++++.-|+--+-..+|-.|.+. |=|.|+.+ +...+.. =+.+
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~~ 79 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLKS 79 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHHH
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHHH
Confidence 68888999998764 2 26899999999999999999999998888777654 44678764 4444422 2345
Q ss_pred hHHHHHHHHHHHHHH
Q 031569 87 YIEEVYAAYEQHKLE 101 (157)
Q Consensus 87 yv~~l~~~l~~~k~~ 101 (157)
|++.+-...-.|-+.
T Consensus 80 ~l~~i~rdav~yaeh 94 (121)
T 2ly8_A 80 FLESVIRDSVTYTEH 94 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555544455443
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.70 E-value=0.95 Score=36.63 Aligned_cols=70 Identities=13% Similarity=0.264 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh-cCch
Q 031569 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSREDKRTIAPEHVLKALEV-LGFG 85 (157)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~----eFI~~lsseAneia~~~~RKTI~~edVl~AL~~-LgF~ 85 (157)
++...+..+++..+. .++.++.++.+.|.+.+. -.+.-+-..|...|...++.+|+.+||..|++. ++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~ 334 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 334 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHH
Confidence 455666777775543 357799999999998876 244455566777888889999999999999986 4443
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.32 E-value=3.1 Score=33.22 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhH
Q 031569 18 KATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYI 88 (157)
Q Consensus 18 ~A~V~riiKe~LP---~~~~iskdA~~~l~~c~~------eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv 88 (157)
...+..|++..+. .+..++.++.+.+.+.+. -.+.-+...|...|...++.+|+.+||..|+..+....+.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~ 282 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVS 282 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHH
Confidence 5666677765542 246789999999888876 4555566677888888899999999999999988544433
Q ss_pred H
Q 031569 89 E 89 (157)
Q Consensus 89 ~ 89 (157)
.
T Consensus 283 ~ 283 (387)
T 2v1u_A 283 E 283 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.41 E-value=2.3 Score=36.42 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHH-H---HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECC-V---EFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~-~---eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
++..-+..+++..+. .++.++.++...|.+.| . .....+...|..+|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 344556666665432 24679999999988877 1 345555677888999999999999999999865
No 52
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=83.67 E-value=3.1 Score=40.00 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=50.7
Q ss_pred ccccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 12 EDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 12 dd~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
-.+.+|.+.|.|++|... .-||+..|..-+.-...-...-|---|-..|...+++.|++.||..|+..
T Consensus 101 ~~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CCccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 358899999999997766 46999888877766544444444444556677788889999999877743
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.99 E-value=4 Score=32.71 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 16 LPKATMTKIIKEMLPA---DVRVARDAQDLLIECC------------VEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 16 LP~A~V~riiKe~LP~---~~~iskdA~~~l~~c~------------~eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
|+...+..+++..+.. ...++.++...|.+.+ --++..+...|...|...++.+|+.+||..|+.
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446666777665432 3478999999988888 234555556778888888899999999999998
Q ss_pred hcCchhhHHHH
Q 031569 81 VLGFGEYIEEV 91 (157)
Q Consensus 81 ~LgF~~yv~~l 91 (157)
.+....+...+
T Consensus 273 ~~~~~~~~~~l 283 (389)
T 1fnn_A 273 EVLFGISEEVL 283 (389)
T ss_dssp HHSCCCCHHHH
T ss_pred HHhhhhHHHHH
Confidence 87655444333
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.24 E-value=7.2 Score=30.93 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchh
Q 031569 16 LPKATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGE 86 (157)
Q Consensus 16 LP~A~V~riiKe~LP---~~~~iskdA~~~l~~c~~------eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~ 86 (157)
|....+..+++..+. ....++.++...+.+.+. ..+.-+...|...|..+++.+|+.+||..|+..+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445667777765332 146789999998888775 23444666788888888999999999999999886555
Q ss_pred hHHHH
Q 031569 87 YIEEV 91 (157)
Q Consensus 87 yv~~l 91 (157)
+...+
T Consensus 277 ~~~~~ 281 (386)
T 2qby_A 277 VRDII 281 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 55
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=76.73 E-value=3 Score=29.69 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=30.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++|..++.+|.. |...|...+...|.++|++.||=.-
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~ 41 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQ 41 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTC
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcC
Confidence 567777777765 7788899999999999999998543
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.01 E-value=14 Score=29.60 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=49.3
Q ss_pred cCcHHHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 15 SLPKATMTKIIKEMLP---ADVRVARDAQDLLIECCV------EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP---~~~~iskdA~~~l~~c~~------eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
.|....+..|++..+. .+..++.++.+.+.+.+. ..+.-+...|...|. +..+|+.+||..|+..+...
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~ 273 (384)
T 2qby_B 196 PYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQE 273 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcc
Confidence 3455667777776432 146789999988888776 123334445666666 67889999999999987544
Q ss_pred hhHH
Q 031569 86 EYIE 89 (157)
Q Consensus 86 ~yv~ 89 (157)
.|..
T Consensus 274 ~~~~ 277 (384)
T 2qby_B 274 RLIE 277 (384)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4443
No 57
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=74.76 E-value=3.1 Score=29.77 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
+++..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 577777777755 77888889999999999999985443
No 58
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=74.46 E-value=3.7 Score=29.59 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++|..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 567777777765 7788999999999999999998654
No 59
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=71.71 E-value=4 Score=29.45 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
++|..++.+|.. |...|...+...|.++|++.||=.-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 578888888765 77789999999999999999986543
No 60
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.54 E-value=3.4 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
|..|..+|...|...++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 66677788888888899999999999999753
No 61
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=70.94 E-value=3.6 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhh
Q 031569 35 VARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (157)
Q Consensus 35 iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL 79 (157)
+|..++.+|. .|.+.|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLN------------MAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHH------------HHHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHH------------HHHHHHHHcCCCCcCHHHHHHHH
Confidence 4556666654 47788888899999999999998
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.70 E-value=20 Score=28.43 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=35.2
Q ss_pred CccccHHHHHHHHHHHHHH-----------------------HHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 32 DVRVARDAQDLLIECCVEF-----------------------INLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eF-----------------------I~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++.++.++.+.+.+.+... ...+...|...|.-.++..|+++||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5678888888887655322 12233455666777888899999998888643
No 63
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.22 E-value=14 Score=29.17 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=39.5
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 32 DVRVARDAQDLLIECCVE-------FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~e-------FI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++.++.++.+.|.+.+.- -+..+...|...|...++.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 568999999999887653 334455567778888899999999999887643
No 64
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=63.99 E-value=7.4 Score=25.37 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.4
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
|..|..+|...|-..++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 444556788888888899999999999997653
No 65
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=62.82 E-value=5.6 Score=26.10 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=19.7
Q ss_pred cChhhHHhhhhhcCchhhHHHHH
Q 031569 70 IAPEHVLKALEVLGFGEYIEEVY 92 (157)
Q Consensus 70 I~~edVl~AL~~LgF~~yv~~l~ 92 (157)
=++++|..-|+.+||+.|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 47899999999999999986643
No 66
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=61.07 E-value=11 Score=26.95 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=32.2
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
...+|..++.+|.+ |...|..-+...|+.+|++-||=.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 46688888888866 66677888899999999999986544
No 67
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.01 E-value=17 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.274 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 33 VRVARDAQDLLIECCV-------------EFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~-------------eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..++.++...|.+.+. .-+.-|-..|..+|...++..|+.+||..|+..
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 5799999999988664 233344557889999999999999999999954
No 68
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=59.28 E-value=8.9 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.3
Q ss_pred hhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 56 SESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 56 seAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
.+|.-.|-..++..|+.+|+..|++..-
T Consensus 42 ~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 42 QEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 4566666777888999999999998763
No 69
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=59.13 E-value=7 Score=25.92 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=20.6
Q ss_pred ccChhhHHhhhhhcCchhhHHHHH
Q 031569 69 TIAPEHVLKALEVLGFGEYIEEVY 92 (157)
Q Consensus 69 TI~~edVl~AL~~LgF~~yv~~l~ 92 (157)
.=++++|..-|+.+||+.|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 458899999999999999987654
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=58.52 E-value=14 Score=26.33 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
.++..-+..+++..+. .+..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3455666666665543 14568888888887766544444443333334333 6899999998875
No 71
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=57.54 E-value=24 Score=22.59 Aligned_cols=14 Identities=50% Similarity=0.740 Sum_probs=12.8
Q ss_pred hhHHhhhhhcCchh
Q 031569 73 EHVLKALEVLGFGE 86 (157)
Q Consensus 73 edVl~AL~~LgF~~ 86 (157)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 72
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=57.37 E-value=17 Score=26.05 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhh
Q 031569 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKAL 79 (157)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL 79 (157)
|+..-+..+++..+. .+..++.++...|.+.+.--..++-......+. .++++|+.+||-.++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHh
Confidence 445566666665542 246788999888888776555444444433333 344589999998876
No 73
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=57.23 E-value=30 Score=24.18 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=29.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..+|..+..+|.. |...|..-+...|+.+|++-||=.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 4678887777765 666777778889999999999854
No 74
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=57.21 E-value=9.2 Score=25.58 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
|.-|..+|.-.|-+.++..|+.+|+..|++.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5555666777777888899999999999987544
No 75
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=57.14 E-value=16 Score=26.14 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=31.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
...+|..+..+|.. |...|..-+...|+.+|++-||=.-+
T Consensus 79 ~~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 79 HIPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 35688898888876 55667788889999999999985443
No 76
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=54.93 E-value=9.8 Score=28.80 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
+++..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 466777777655 7778888899999999999998554
No 77
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=53.03 E-value=20 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=27.3
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 031569 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF 50 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eF 50 (157)
..+..+||.|++...- ....||.+++.-|.+.+.++
T Consensus 10 aGVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 4678999999998631 12379999999998887665
No 78
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=52.87 E-value=7.6 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.3
Q ss_pred cChhhHHhhhhhcCchhhHHHH
Q 031569 70 IAPEHVLKALEVLGFGEYIEEV 91 (157)
Q Consensus 70 I~~edVl~AL~~LgF~~yv~~l 91 (157)
=+++||..-|..+||+.|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999999998754
No 79
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=52.86 E-value=12 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 52 NLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 52 ~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.-|..+|.-.|....+..|+.+|+..||+..
T Consensus 51 ~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 51 KGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455677777888888999999999998753
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=47.14 E-value=35 Score=27.53 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHHhhCC-CCccccHHHHHHHHHHHH---HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 19 ATMTKIIKEMLP-ADVRVARDAQDLLIECCV---EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 19 A~V~riiKe~LP-~~~~iskdA~~~l~~c~~---eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
..+..|++.... -++.++.++...|.+.+. -.+.-+-..+.+.|...++..|+.++|..||+.++++
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 345555554321 146788888887776532 2233334456666777778889999999999988764
No 81
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=47.08 E-value=14 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.7
Q ss_pred ccChhhHHhhhhhc-CchhhHHHHH
Q 031569 69 TIAPEHVLKALEVL-GFGEYIEEVY 92 (157)
Q Consensus 69 TI~~edVl~AL~~L-gF~~yv~~l~ 92 (157)
.-+++||..-|..+ ||++|++...
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 46899999999999 9999987654
No 82
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=46.42 E-value=29 Score=27.72 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=46.1
Q ss_pred cccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHHHHH
Q 031569 13 DASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVY 92 (157)
Q Consensus 13 d~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~ 92 (157)
++.+|..-|.+++...-++...+-..-+..|.+-....-..+..--..+....+..+++.+..+..+..-.. .|-.++.
T Consensus 58 ~~G~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~~~~~~~e~f~~f~~~~~-~y~~e~~ 136 (249)
T 3qao_A 58 ELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSN-PYEEEAR 136 (249)
T ss_dssp HTTCCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHTTTCCSSSS-TTCCHHH
T ss_pred HCCCCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHhcCcchh-HHHHHHH
Confidence 457899999999975332222222333344444444444444444445555677788999988776542111 5655555
Q ss_pred HHHH--HHHHHhhhhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 031569 93 AAYE--QHKLETMQDSLKGGKWSNGAEMTEEEAAAEQQRMFAEARARMNG 140 (157)
Q Consensus 93 ~~l~--~~k~~~k~~r~kk~~k~~~~g~~eEel~~~Q~eLF~~ar~~~~~ 140 (157)
+... .|++... ...++|.+ ....-.++|+.-.+.+..
T Consensus 137 ~~~G~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~l~~~~~~ 175 (249)
T 3qao_A 137 KLWGDKVVEKANE----------KVNNMSEK-EQLTLKESFDAEFRHLAS 175 (249)
T ss_dssp HHCC----------------------------------------------
T ss_pred HHHChHHHHHHHH----------HHHhcCHH-HHHHHHHHHHHHHHHHHh
Confidence 4432 2222211 11234444 333345677777777777
No 83
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.93 E-value=22 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 50 FI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455667778888888899999999999998754
No 84
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=41.63 E-value=33 Score=24.15 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=28.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
..+|..+..+|.. |...|..-+...|+++|++-||=.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 4677777766654 566667778889999999999854
No 85
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=41.59 E-value=13 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.4
Q ss_pred cccCcHHHHHHHHHhh-CCCCccccHH
Q 031569 13 DASLPKATMTKIIKEM-LPADVRVARD 38 (157)
Q Consensus 13 d~~LP~A~V~riiKe~-LP~~~~iskd 38 (157)
-+.+.++||+++|++. +|..++|+.-
T Consensus 19 ~lgvsrstiy~~~~~g~fP~piklG~~ 45 (66)
T 1z4h_A 19 DTGFGKTFIYDRIKSGDLPKAKVIHGR 45 (66)
T ss_dssp HHSSCHHHHHHHHHHHHCCCSEESSSC
T ss_pred HHCcCHHHHHHHHHCCCCCCCEEeCCC
Confidence 4689999999999875 7866777643
No 86
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=41.40 E-value=34 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=31.3
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhhhHHHhh-hcCCCccChhhHHhhhhh
Q 031569 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCS-REDKRTIAPEHVLKALEV 81 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eFI~~lsseAneia~-~~~RKTI~~edVl~AL~~ 81 (157)
...+|..+..+|.+ |...|. .-+...|+.+|++-||=.
T Consensus 96 ~~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~ 134 (171)
T 3zri_A 96 YPAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALT 134 (171)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHh
Confidence 36688998888876 667778 889999999999999843
No 87
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=41.12 E-value=45 Score=21.49 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc---C
Q 031569 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL---G 83 (157)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L---g 83 (157)
++..-|.++++..=. +-.|+-+ +|+.+++ ..+......++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 667788888887643 3344432 3444443 245566667788899999999999998 6
Q ss_pred chhhHHHHHHHHH
Q 031569 84 FGEYIEEVYAAYE 96 (157)
Q Consensus 84 F~~yv~~l~~~l~ 96 (157)
..---..+...+.
T Consensus 75 ~~~~~~~~~~~~~ 87 (109)
T 5pal_A 75 RDLNDTETKALLA 87 (109)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6544444544443
No 88
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=40.77 E-value=61 Score=24.77 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=33.1
Q ss_pred CccccHHHHHHHHHHHHH------------HHHHHHhh----hHHHhhhcCCC-ccChhhHHhhhhhcCc
Q 031569 32 DVRVARDAQDLLIECCVE------------FINLVSSE----SNEVCSREDKR-TIAPEHVLKALEVLGF 84 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~e------------FI~~lsse----Aneia~~~~RK-TI~~edVl~AL~~LgF 84 (157)
.+.++.++.+.|.+.+.. ....|-.. +.+.+...++. +|+.+||..|+..+..
T Consensus 232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 357999999999887732 22332221 22333333433 6999999999987643
No 89
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=40.64 E-value=7.9 Score=27.08 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.3
Q ss_pred ccChhhHHhhhhhcCchhhHHHH
Q 031569 69 TIAPEHVLKALEVLGFGEYIEEV 91 (157)
Q Consensus 69 TI~~edVl~AL~~LgF~~yv~~l 91 (157)
.-+++||..-|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 46899999999999999999665
No 90
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=40.39 E-value=52 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHH
Q 031569 21 MTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNE 60 (157)
Q Consensus 21 V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAne 60 (157)
|..+|-.- ++.-.-..|+..+|-+..++||..+..+|.+
T Consensus 6 i~~mMy~f-GD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGF-GDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHT-TSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555543 3455678899999999999999999998875
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=38.05 E-value=1.2e+02 Score=24.24 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=48.9
Q ss_pred cCcHHHHHHHHHhh----CCCCccccHHHHHHHHHHHH---------HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 15 SLPKATMTKIIKEM----LPADVRVARDAQDLLIECCV---------EFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 15 ~LP~A~V~riiKe~----LP~~~~iskdA~~~l~~c~~---------eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.|+..-+..+++.. .+ ...++.++...|.+.+. -++..+...|...|...++.+|+.+||..++..
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34455666776543 32 24588888888888776 366677777888888888899999999988876
Q ss_pred cC
Q 031569 82 LG 83 (157)
Q Consensus 82 Lg 83 (157)
+.
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 54
No 92
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=37.88 E-value=50 Score=26.11 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
.++...+..+++..+. .++.++.++...|.+.+.--+..+-......+.. +..+|+.+||..++....
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~~ 245 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTLD 245 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCCC
Confidence 3556667777765542 2567889988888876543333333332222222 245699988887766554
No 93
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=37.70 E-value=56 Score=25.36 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHH---HHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 16 LPKATMTKIIKEMLP-ADVRVARDAQDLLIECCV---EFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 16 LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~---eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
+|..-+..+++..+. .++.++.++...|.+.+. -.+..+...+...|...+..+|+.+|+..++..++.
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 444555666655442 246799999988888752 223333344445555667788999999999887654
No 94
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=36.90 E-value=38 Score=23.71 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
+.+|..+..+|.. |...+..-+...|+.+|++-||=
T Consensus 81 ~~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 81 VQPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp -CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 3466666665544 55666666888999999999986
No 95
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=35.82 E-value=24 Score=23.81 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=20.4
Q ss_pred CccChhhHHhhhhhcCc--hhhHHHHH
Q 031569 68 RTIAPEHVLKALEVLGF--GEYIEEVY 92 (157)
Q Consensus 68 KTI~~edVl~AL~~LgF--~~yv~~l~ 92 (157)
..=+++||..-|+.+|| +.|++...
T Consensus 18 ~~Wt~~dV~~WL~~~gl~~~~Y~~~F~ 44 (91)
T 1v85_A 18 DKWTTEEVVLWLEQLGPWASLYRDRFL 44 (91)
T ss_dssp GGCCHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34689999999999999 88876543
No 96
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.60 E-value=59 Score=27.77 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
++|..++.+|.. |.+.|...+...|.++|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 577778777765 77789999999999999999986554
No 97
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=35.56 E-value=81 Score=23.94 Aligned_cols=58 Identities=5% Similarity=0.092 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhH
Q 031569 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75 (157)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edV 75 (157)
+|-+-+.|+.+.+. ++-|.|+-..-+.+....=+.-|.--|.+.|+.+||-+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 56677899999987 57777888888888888888888889999999999999999886
No 98
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=34.98 E-value=30 Score=25.22 Aligned_cols=59 Identities=8% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 20 TMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 20 ~V~riiKe~LP-~~~~iskdA~~~l~~c~~----eFI~~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
.+.++++..+. .++.++.++.+.|.+.+. +.++.|. .+...|..++ ++|+.+||..+|+
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34444443331 246788888888877653 3333333 3333443344 4699999988875
No 99
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=34.92 E-value=24 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.3
Q ss_pred cChhhHHhhhhhc--CchhhHHHHH
Q 031569 70 IAPEHVLKALEVL--GFGEYIEEVY 92 (157)
Q Consensus 70 I~~edVl~AL~~L--gF~~yv~~l~ 92 (157)
=+++||..-|+.+ ||+.|++...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4789999999997 9999987654
No 100
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=34.83 E-value=79 Score=24.17 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=40.2
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
.+|...+..++...+. .++.++.++.+.|.+.+.--+..+-......+.. ..+|+.+||..++....-
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~ 228 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARP 228 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCCCH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCCH
Confidence 3455666666665543 3577999999888876543333222222222222 346999999888765443
No 101
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=34.58 E-value=35 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhhcC
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVLG 83 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~Lg 83 (157)
|..+...|...|...++.+|+.+|+..|++..-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344556677778888899999999999998753
No 102
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.42 E-value=41 Score=26.41 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=42.5
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHhhhHHHhhhcCC-CccChhhHHhhhhhcCc
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSREDK-RTIAPEHVLKALEVLGF 84 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~----eFI~~lsseAneia~~~~R-KTI~~edVl~AL~~LgF 84 (157)
.++...+..+++..+. .++.++.++...|.+.+. ..++.+-.. ...+...++ ++|+.+||..++..+..
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~-~~~~~~~~~~~~It~~~v~~~~~~~~~ 265 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA-SKGAQYLGDGKNITSTQVEELAGVVPH 265 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHT-HHHHHHHCSCCCCCHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-HHhcCCCccCccccHHHHHHHhCCCCH
Confidence 4555566666665442 367799999988887643 344444332 223333333 38999999998876543
No 103
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=32.30 E-value=98 Score=19.69 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc---C
Q 031569 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL---G 83 (157)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L---g 83 (157)
++..-|..|++..= .+-.|+-+ +|+.++. ..+......++.-+|+.+++..+|..+ |
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g 74 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHK----------EFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSA 74 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTS
T ss_pred CCHHHHHHHHHHhC-CCCcCcHH----------HHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccC
Confidence 56778888888753 33445543 3333332 345566667788899999999999999 5
Q ss_pred chhhHHHHHHHH
Q 031569 84 FGEYIEEVYAAY 95 (157)
Q Consensus 84 F~~yv~~l~~~l 95 (157)
..-=-..+...+
T Consensus 75 ~~~~~~~~~~~~ 86 (108)
T 2pvb_A 75 RALTDAETKAFL 86 (108)
T ss_dssp CCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 542233344443
No 104
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=31.77 E-value=99 Score=21.30 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=28.2
Q ss_pred CCCccChhhHHhhhhhcCchhhHHHHHHHHHHH
Q 031569 66 DKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQH 98 (157)
Q Consensus 66 ~RKTI~~edVl~AL~~LgF~~yv~~l~~~l~~~ 98 (157)
--|||.|.+|-.||..-+|-.+.+.+....-.-
T Consensus 21 ~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~L 53 (85)
T 2ns0_A 21 DSASICPSDVARAVAPDDWRPLMEPVREAAGRL 53 (85)
T ss_dssp TTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHH
Confidence 349999999999998888999999998876554
No 105
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=31.46 E-value=67 Score=18.41 Aligned_cols=28 Identities=7% Similarity=-0.155 Sum_probs=20.5
Q ss_pred hHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 58 SNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 58 Aneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
+......++.-.|+.+++..+|..+|..
T Consensus 5 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 32 (66)
T 3li6_A 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAI 32 (66)
T ss_dssp HHHHHCTTCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHccCC
Confidence 3344455667789999999999988754
No 106
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=31.28 E-value=1e+02 Score=23.95 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=55.1
Q ss_pred cccc--cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhH
Q 031569 11 KEDA--SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHV 75 (157)
Q Consensus 11 ~dd~--~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edV 75 (157)
+++. -+|-+-+.|+.+.+. ++-|.|+-..-+.+....=+.-|.--|.+.|..++|-+|.+.|+
T Consensus 20 ~~~Mm~vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 20 IETMLRPKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp -CCTTSCTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHhcCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4555 678889999999997 57888999999999999999999999999999999999999886
No 107
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=31.22 E-value=1.5e+02 Score=21.41 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=43.3
Q ss_pred cccccCcHHHHHHHHHhhCCC---CccccHHHHHHHHHH----------HHHHHHHHH-----hhhHHHhhhcCCCccCh
Q 031569 11 KEDASLPKATMTKIIKEMLPA---DVRVARDAQDLLIEC----------CVEFINLVS-----SESNEVCSREDKRTIAP 72 (157)
Q Consensus 11 ~dd~~LP~A~V~riiKe~LP~---~~~iskdA~~~l~~c----------~~eFI~~ls-----seAneia~~~~RKTI~~ 72 (157)
+.+-.|...-+..+++..++. +..++.+....|... -.+|+.+++ ..|..... ++.-+|+.
T Consensus 16 ~~dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G~I~~ 94 (174)
T 2i7a_A 16 PRGSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLS 94 (174)
T ss_dssp C-CCCEEHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTTBEEG
T ss_pred CCCCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCCcCCH
Confidence 334455555566666654321 233443333222222 135555543 45777777 88889999
Q ss_pred hhHHhhhhhc----Cch
Q 031569 73 EHVLKALEVL----GFG 85 (157)
Q Consensus 73 edVl~AL~~L----gF~ 85 (157)
+++..+|..+ |+.
T Consensus 95 ~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 95 SDLWKAIENTDFLRGIF 111 (174)
T ss_dssp GGHHHHHHTCGGGTTCC
T ss_pred HHHHHHHHHhHhccCCC
Confidence 9999999999 875
No 108
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.02 E-value=39 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=25.6
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
|..|..+|.-.|..+++..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5556677888888899999999999999864
No 109
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.97 E-value=21 Score=24.74 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.8
Q ss_pred ccChhhHHhhhhhcCchh--hHHHH
Q 031569 69 TIAPEHVLKALEVLGFGE--YIEEV 91 (157)
Q Consensus 69 TI~~edVl~AL~~LgF~~--yv~~l 91 (157)
.=+++||..-|..+||++ |++..
T Consensus 29 ~Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 29 TWGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp GCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hCCHHHHHHHHHHcCCChHHHHHHH
Confidence 357899999999999998 76543
No 110
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.37 E-value=1.2e+02 Score=25.79 Aligned_cols=68 Identities=13% Similarity=0.270 Sum_probs=45.1
Q ss_pred cCcHHHHHHHHHhhCC--------CCccccHHHHHHHHHHHH----HHHHHHHhhhHHHhhhc--CCCccChhhHHhhhh
Q 031569 15 SLPKATMTKIIKEMLP--------ADVRVARDAQDLLIECCV----EFINLVSSESNEVCSRE--DKRTIAPEHVLKALE 80 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP--------~~~~iskdA~~~l~~c~~----eFI~~lsseAneia~~~--~RKTI~~edVl~AL~ 80 (157)
.+|...+..+++..+. .++.++.++.+.|.+.+. ..++.|- .+...|... ++.+|+.+||..++.
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHh
Confidence 3556667777766543 357799999999988753 3333333 333444423 667899999999998
Q ss_pred hcC
Q 031569 81 VLG 83 (157)
Q Consensus 81 ~Lg 83 (157)
...
T Consensus 243 ~~~ 245 (447)
T 3pvs_A 243 ERS 245 (447)
T ss_dssp CCC
T ss_pred hhh
Confidence 763
No 111
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=29.15 E-value=52 Score=25.92 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCC-CCccccHHHHHHHHHHHHH---HHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 18 KATMTKIIKEMLP-ADVRVARDAQDLLIECCVE---FINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 18 ~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~e---FI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
...+..+++..+. .++.++.++...|.+.+.- .+..+-..+...|...+..+|+.+||-.++..+++.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4445555554432 2467899998888875432 223333445567777788899999999999887764
No 112
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.85 E-value=1.1e+02 Score=19.36 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=42.4
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc---
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL--- 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L--- 82 (157)
.+...-|.++++..= .+-.|+- .+|+.++. ..+......++.-+|+.+++..+|..+
T Consensus 6 ~~t~~e~~~~~~~~d-~~g~i~~----------~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 74 (110)
T 1pva_A 6 LLKADDIKKALDAVK-AEGSFNH----------KKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAAD 74 (110)
T ss_dssp HSCHHHHHHHHHHTC-STTCCCH----------HHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcH----------HHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhc
Confidence 355667778877643 2334442 23333332 345566667788899999999999999
Q ss_pred CchhhHHHHHHHHH
Q 031569 83 GFGEYIEEVYAAYE 96 (157)
Q Consensus 83 gF~~yv~~l~~~l~ 96 (157)
|..---..+...+.
T Consensus 75 g~~~~~~~~~~~~~ 88 (110)
T 1pva_A 75 GRDLTDAETKAFLK 88 (110)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 54322333444443
No 113
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=28.73 E-value=53 Score=20.93 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=22.5
Q ss_pred ccCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 031569 14 ASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEF 50 (157)
Q Consensus 14 ~~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eF 50 (157)
..+..+||.|++... -.|+.+++.-|.+++.++
T Consensus 19 aGVS~sTVSr~ln~~----~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 19 AKVSTATVSRALMNP----DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TTCCHHHHHHTTTCC----CCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 467778888877642 247888887777766654
No 114
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=28.64 E-value=1.4e+02 Score=22.85 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.++...+..+++..+. .++.++.++.+.|.+.+.--+..+-......+. ...+|+.++|..++...
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA--LDKKITDENVFMVASRA 234 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSEECHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHCCC
Confidence 3456666666665542 367799999988887764322222222211111 22368888887776554
No 115
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=28.48 E-value=1.2e+02 Score=19.34 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=43.7
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc---
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL--- 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L--- 82 (157)
.++..-|.++++..= .+-.|+-+ +|+.+++ ..+......++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 466778888888753 33344432 3444432 345555667777889999999999999
Q ss_pred CchhhHHHHHHHH
Q 031569 83 GFGEYIEEVYAAY 95 (157)
Q Consensus 83 gF~~yv~~l~~~l 95 (157)
|..---..+...+
T Consensus 75 ~~~~~~~~~~~~~ 87 (109)
T 3fs7_A 75 ARVLTSAETKAFL 87 (109)
T ss_dssp SCCCCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 5543333444443
No 116
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.37 E-value=40 Score=29.26 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 50 FI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
-|..|..+|.-.|.+.++..|+.+|+..||+..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356666778888888899999999999998653
No 117
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=28.30 E-value=36 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.9
Q ss_pred ccChhhHHhhhhhc--CchhhHHHHH
Q 031569 69 TIAPEHVLKALEVL--GFGEYIEEVY 92 (157)
Q Consensus 69 TI~~edVl~AL~~L--gF~~yv~~l~ 92 (157)
.=+.+||..-|+.+ ||.+|.+...
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 46899999999998 7999986543
No 118
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.27 E-value=43 Score=29.38 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.6
Q ss_pred HHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 50 FI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
=|.-|..+|.-.|..+++..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 35666778888888999999999999999864
No 119
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=28.12 E-value=1.6e+02 Score=24.56 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=40.5
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCcc--ChhhHHhhhhhcCchhhHHHHHHHHHHHHHHhh
Q 031569 32 DVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTI--APEHVLKALEVLGFGEYIEEVYAAYEQHKLETM 103 (157)
Q Consensus 32 ~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI--~~edVl~AL~~LgF~~yv~~l~~~l~~~k~~~k 103 (157)
.+.++.+-.+.+...-+..-.++......+-. |+..+ .-+..++-|+.+|++.+++...+.+++|+...+
T Consensus 423 ~~~~~~~e~~~~~~~~~~l~~~~~e~~~~~i~--G~~d~d~~~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~~~ 494 (502)
T 3vlv_A 423 GVNLTVEEREIYDKYWPDVKTYMFEMGQSWVM--GTKDPEKTWNDYQQQLKNRGFYQVMIVMQKAYDRQYGGAA 494 (502)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSSCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCchhhHHHHHHHHHHHCChHHHHHHHHHHHHHHHhhcc
Confidence 67777664443433333333333332222222 23333 245678899999999999999999998865544
No 120
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=27.93 E-value=84 Score=17.88 Aligned_cols=37 Identities=5% Similarity=0.001 Sum_probs=24.9
Q ss_pred HHHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHHH
Q 031569 59 NEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (157)
Q Consensus 59 neia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (157)
......++.-.|+.+++..+|..+|..---..+...+
T Consensus 7 F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 43 (67)
T 1tiz_A 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43 (67)
T ss_dssp HHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3444556777899999999999998753333344433
No 121
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=27.12 E-value=59 Score=25.93 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=37.1
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
.++...+.+.+++.+- .++.|+.++..+|.+.+.-=...+.++-...+.-.+.++|+.+||...+..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 3445555555544432 368899999999888654322222233222332223447888887665443
No 122
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=27.05 E-value=47 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.7
Q ss_pred cChhhHHhhhhhc--CchhhHHHHHH
Q 031569 70 IAPEHVLKALEVL--GFGEYIEEVYA 93 (157)
Q Consensus 70 I~~edVl~AL~~L--gF~~yv~~l~~ 93 (157)
=++++|..-|..+ |++.|++...+
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~~ 32 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFER 32 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4789999999999 59999977543
No 123
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.63 E-value=27 Score=20.67 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.8
Q ss_pred CccChhhHHhhhhhcCch
Q 031569 68 RTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 68 KTI~~edVl~AL~~LgF~ 85 (157)
..+++++|..+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467899999999999986
No 124
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=26.58 E-value=87 Score=21.36 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.0
Q ss_pred hhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 57 ESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 57 eAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
.+......++.-.|+.+++..+|..+|+
T Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 44 KGFSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3455556778888999999999999996
No 125
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=26.54 E-value=51 Score=30.43 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
++|..++.+|.. |...|...+...|+++|++.||=.
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl~ 40 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLLK 40 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHCC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHh
Confidence 467777777765 778888899999999999999843
No 126
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=26.06 E-value=40 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=20.5
Q ss_pred ccChhhHHhhhhhc--CchhhHHHHH
Q 031569 69 TIAPEHVLKALEVL--GFGEYIEEVY 92 (157)
Q Consensus 69 TI~~edVl~AL~~L--gF~~yv~~l~ 92 (157)
.=+++||..-|+.+ ||+.|++...
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F~ 50 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLFA 50 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHHH
Confidence 56899999999999 9999986543
No 127
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.92 E-value=45 Score=29.50 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
|.-|..+|.-.|.+.+++.|+.+|+..|++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5566678888888899999999999999875
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.88 E-value=51 Score=28.47 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 50 FINLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 50 FI~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
=|.-|..+|.-.|-++++..|+.+|+..|++.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35666678888888899999999999999864
No 129
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.85 E-value=37 Score=29.38 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhh
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEV 81 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~ 81 (157)
|..|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6667778888888999999999999998753
No 130
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.38 E-value=1.4e+02 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=39.6
Q ss_pred cCcHHHHHHHHHhhCC------CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 15 SLPKATMTKIIKEMLP------ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP------~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.+....|.+-+...++ ....+|..++.+|.. |...|..-+...|..+|++-||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 4445556666665553 235688888888866 5556677788899999999998543
No 131
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.27 E-value=1e+02 Score=27.75 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 34 RVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 34 ~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++|..++.+|.. |.+.|...+...|.++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 577788877765 7778899999999999999998654
No 132
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.96 E-value=56 Score=29.37 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.0
Q ss_pred hhHHHhhhcCCCccChhhHHhhhh
Q 031569 57 ESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 57 eAneia~~~~RKTI~~edVl~AL~ 80 (157)
.|...|...+...|+++|++.||=
T Consensus 12 ~A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 12 MAFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp HHHHHHHHTTBSEECHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccHHHHHHHHH
Confidence 477888889999999999999984
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.85 E-value=27 Score=26.26 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=17.2
Q ss_pred HHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 51 INLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 51 I~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
|.-+...|...|...++.+|+.+|+..|++..
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44455566667777788889999998888654
No 134
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=24.69 E-value=1.4e+02 Score=18.91 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 16 LPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 16 LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L 82 (157)
++..-|.++++..= .+-.|+-+ +|+.++. ..+......++.-+|+.+++..+|..+
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHK----------KFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHH----------HHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHH----------HHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 55667777877643 33344432 2333322 345556667777889999999999998
No 135
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=24.65 E-value=1.4e+02 Score=18.95 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHH---------hhhHHHhhhcCCCccChhhHHhhhhhc---
Q 031569 15 SLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVS---------SESNEVCSREDKRTIAPEHVLKALEVL--- 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~~~~iskdA~~~l~~c~~eFI~~ls---------seAneia~~~~RKTI~~edVl~AL~~L--- 82 (157)
.+...-|.+|++..- .+-.|+-+ +|+.++. ..+......++.-+|+.+++..+|..+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~ 74 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYK----------AFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAG 74 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTT
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHH----------HHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHccc
Confidence 466788888888754 34445532 3333332 245555667777889999999999998
Q ss_pred CchhhHHHHHHHH
Q 031569 83 GFGEYIEEVYAAY 95 (157)
Q Consensus 83 gF~~yv~~l~~~l 95 (157)
|..---..+...+
T Consensus 75 g~~~~~~~~~~~~ 87 (109)
T 1bu3_A 75 ARALTDAETKAFL 87 (109)
T ss_dssp CCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5432233444443
No 136
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=24.65 E-value=1.6e+02 Score=19.63 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.0
Q ss_pred hhHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 57 ESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 57 eAneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
.+....-.++.-.|+.+++..+|..+|..
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 115 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEK 115 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCC
Confidence 35666667777889999999999998854
No 137
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=24.38 E-value=1.6e+02 Score=19.56 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=25.6
Q ss_pred hhHHHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHH
Q 031569 57 ESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 (157)
Q Consensus 57 eAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~ 94 (157)
.+......++.-.|+.+++..+|..+|..---..+...
T Consensus 100 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 100 RAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34455556777789999999999998865333334433
No 138
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.18 E-value=1.2e+02 Score=23.08 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=40.1
Q ss_pred cCcHHHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCc
Q 031569 15 SLPKATMTKIIKEMLP-ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGF 84 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP-~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~LgF 84 (157)
.++...+..+++..+. .++.++.++...|.+.+.--+..+-......+.. .+.|+.++|..++.....
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~--~~~i~~~~v~~~~~~~~~ 233 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG--HGLVNADNVFKIVDSPHP 233 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSBCHHHHHHHHTSCCH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHCCCCH
Confidence 3455666667665442 2467899998888887653222222222222221 246999999888876554
No 139
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=23.48 E-value=35 Score=20.53 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=15.2
Q ss_pred ccChhhHHhhhhhcCch
Q 031569 69 TIAPEHVLKALEVLGFG 85 (157)
Q Consensus 69 TI~~edVl~AL~~LgF~ 85 (157)
++++++|+.+++.+||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999996
No 140
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=23.21 E-value=1.7e+02 Score=19.51 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHhhCCC-CccccHH-HHHHHHHHHHHH-HHHHHhhhHHHhhhcCCCccChhhHHhhhhhcCchhhHHHH
Q 031569 15 SLPKATMTKIIKEMLPA-DVRVARD-AQDLLIECCVEF-INLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEV 91 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP~-~~~iskd-A~~~l~~c~~eF-I~~lsseAneia~~~~RKTI~~edVl~AL~~LgF~~yv~~l 91 (157)
.++...|..+++..=++ +-.|+-+ ...++......- ...-...|....-.++.-.|+.+++..+|..+|..-=-..+
T Consensus 38 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~ 117 (143)
T 2obh_A 38 EPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 117 (143)
T ss_dssp CCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHH
Confidence 34566677777765332 2334432 222222211110 00112346666677788889999999999999864222344
Q ss_pred HHHH
Q 031569 92 YAAY 95 (157)
Q Consensus 92 ~~~l 95 (157)
...+
T Consensus 118 ~~~~ 121 (143)
T 2obh_A 118 QEMI 121 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 141
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.96 E-value=62 Score=24.42 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 53 LVSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 53 ~lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
-+..+|...|...++.+|+.+|+..|++
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 3344566667777888999999998873
No 142
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=22.62 E-value=3.4e+02 Score=24.05 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=23.3
Q ss_pred hcCCCccChhhHHhhhhhcCch-hhHHHHH
Q 031569 64 REDKRTIAPEHVLKALEVLGFG-EYIEEVY 92 (157)
Q Consensus 64 ~~~RKTI~~edVl~AL~~LgF~-~yv~~l~ 92 (157)
+.++++|+++++++--+..||+ +...++-
T Consensus 373 ~~~~~~l~G~~af~LyDTyGfP~dLt~eia 402 (465)
T 1yfs_A 373 EEGRKTLSGKEVFTAYDTYGFPVDLIDEIA 402 (465)
T ss_dssp HTTCCEECHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hcCCCcCCHHHHHhhhhccCCCHHHHHHHH
Confidence 4466789999999999999998 6665543
No 143
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.04 E-value=1.5e+02 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=28.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 33 VRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 33 ~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
..+|..++.+|.. |...|...+...|+.+|++-||=.-
T Consensus 78 ~~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~~ 115 (758)
T 1r6b_X 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFSE 115 (758)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhcc
Confidence 5678888887776 4455555688889999999988553
No 144
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=21.87 E-value=2.6e+02 Score=24.98 Aligned_cols=67 Identities=12% Similarity=0.050 Sum_probs=43.0
Q ss_pred cCcHHHHHHHHHhhC--CCCccccHHHHHHHHHHHHHHHH---------------------HHHhhhHHHhhhcCCCccC
Q 031569 15 SLPKATMTKIIKEML--PADVRVARDAQDLLIECCVEFIN---------------------LVSSESNEVCSREDKRTIA 71 (157)
Q Consensus 15 ~LP~A~V~riiKe~L--P~~~~iskdA~~~l~~c~~eFI~---------------------~lsseAneia~~~~RKTI~ 71 (157)
.++...+.+.+..+= --...++.++.+.|.+.....=. .|-.-|-..|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 466666766665331 01467899998888876443211 1334456668888888899
Q ss_pred hhhHHhhhhh
Q 031569 72 PEHVLKALEV 81 (157)
Q Consensus 72 ~edVl~AL~~ 81 (157)
++||..|+.-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888753
No 145
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.83 E-value=34 Score=20.55 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.5
Q ss_pred CccChhhHHhhhhhcCch
Q 031569 68 RTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 68 KTI~~edVl~AL~~LgF~ 85 (157)
.+++.++|..+++.+||.
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 347899999999999996
No 146
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=21.76 E-value=1.5e+02 Score=24.96 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=47.3
Q ss_pred hCCCCcc---ccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCcc-ChhhHHhhhhhcCchhhHHHHHHHHHHHH
Q 031569 28 MLPADVR---VARDAQDLLIECCVEFINLVSSESNEVCSREDKRTI-APEHVLKALEVLGFGEYIEEVYAAYEQHK 99 (157)
Q Consensus 28 ~LP~~~~---iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI-~~edVl~AL~~LgF~~yv~~l~~~l~~~k 99 (157)
.+|...+ ++.|-.+-+...-+..-.|+.......-.... .. .=+..++-|+.+|+++|++...+.+++|+
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~~--~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKGG--IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHCC--HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 4664342 77777777766666555555554444444332 22 24677889999999999999999999885
No 147
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.75 E-value=95 Score=18.32 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred HHHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHH
Q 031569 59 NEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 94 (157)
Q Consensus 59 neia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~ 94 (157)
......++.-.|+.+++..+|..+|+.-=-..+...
T Consensus 13 F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 48 (77)
T 2joj_A 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILEL 48 (77)
T ss_dssp HHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334445667789999999999999875333334333
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.74 E-value=66 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=20.6
Q ss_pred HHhhhHHHhhhcCCCccChhhHHhhhh
Q 031569 54 VSSESNEVCSREDKRTIAPEHVLKALE 80 (157)
Q Consensus 54 lsseAneia~~~~RKTI~~edVl~AL~ 80 (157)
+-.+|...|...++.+|+.+|+..|++
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 344566667777888999999998873
No 149
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=21.35 E-value=1.7e+02 Score=19.66 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.3
Q ss_pred hhHHHhhhcCCCccChhhHHhhhhhcCch
Q 031569 57 ESNEVCSREDKRTIAPEHVLKALEVLGFG 85 (157)
Q Consensus 57 eAneia~~~~RKTI~~edVl~AL~~LgF~ 85 (157)
.|....-.++.-+|+.+++..+|..+|..
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 117 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGER 117 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 45666667788889999999999999854
No 150
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.08 E-value=1.8e+02 Score=26.22 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=39.9
Q ss_pred cCcHHHHHHHHHhhCC------CCccccHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccChhhHHhhhhhc
Q 031569 15 SLPKATMTKIIKEMLP------ADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVL 82 (157)
Q Consensus 15 ~LP~A~V~riiKe~LP------~~~~iskdA~~~l~~c~~eFI~~lsseAneia~~~~RKTI~~edVl~AL~~L 82 (157)
.+....|.+-+...++ ....+|..++.+|.. |...|..-+...|+++|++-||=.-
T Consensus 54 gvd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 54 GLGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp TCCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 4445556666666553 235688888888866 5556677788899999999998544
No 151
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.92 E-value=1.3e+02 Score=19.16 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHHH
Q 031569 60 EVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (157)
Q Consensus 60 eia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (157)
.....++.-+|+.+++..+|..+|+.-=-..+...+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344566777899999999999998753223344333
No 152
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=58 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.5
Q ss_pred ccChhhHHhhhhhc--CchhhHHHHH
Q 031569 69 TIAPEHVLKALEVL--GFGEYIEEVY 92 (157)
Q Consensus 69 TI~~edVl~AL~~L--gF~~yv~~l~ 92 (157)
.=++++|..-|+.+ |++.|++...
T Consensus 10 ~Wt~~~V~~WL~~l~~gl~~Y~~~F~ 35 (83)
T 2ean_A 10 KWSPSQVVDWMKGLDDCLQQYIKNFE 35 (83)
T ss_dssp GCCTTHHHHHHTTSCGGGTTTHHHHH
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35789999999999 5899987654
No 153
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=20.17 E-value=1e+02 Score=18.59 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=25.7
Q ss_pred hHHHhhhcCCCccChhhHHhhhhhcCchhhHHHHHHHH
Q 031569 58 SNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAY 95 (157)
Q Consensus 58 Aneia~~~~RKTI~~edVl~AL~~LgF~~yv~~l~~~l 95 (157)
+......++.-.|+.+++..+|..+|+.-=...+...+
T Consensus 19 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 19 AFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33444566777899999999999999753333344433
Done!