BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031571
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQD
FASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVS
GLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS

High Scoring Gene Products

Symbol, full name Information P value
AT3G56160 protein from Arabidopsis thaliana 4.8e-28

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031571
        (157 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2078471 - symbol:AT3G56160 species:3702 "Arabi...   278  4.8e-28   2


>TAIR|locus:2078471 [details] [associations]
            symbol:AT3G56160 species:3702 "Arabidopsis thaliana"
            [GO:0006814 "sodium ion transport" evidence=IEA] [GO:0008508 "bile
            acid:sodium symporter activity" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
            evidence=IEA] [GO:0035725 "sodium ion transmembrane transport"
            evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            GO:GO:0016021 EMBL:CP002686 GO:GO:0006810 GO:GO:0009941
            EMBL:AL163763 IPI:IPI00543197 PIR:T47733 RefSeq:NP_191175.2
            UniGene:At.34960 ProteinModelPortal:F4IZC4 TCDB:2.A.93.1.2
            PRIDE:F4IZC4 EnsemblPlants:AT3G56160.1 GeneID:824782
            KEGG:ath:AT3G56160 GeneFarm:3263 TAIR:At3g56160 KO:K14347
            OMA:INGWSLL InterPro:IPR016833 PANTHER:PTHR18640 Pfam:PF13593
            Uniprot:F4IZC4
        Length = 436

 Score = 278 (102.9 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query:    62 ASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSG 121
             AS++ L + K LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SG
Sbjct:    90 ASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISG 149

Query:   122 LTLRSGEIGAAAEAWPVGIFGLCS 145
             LTLR+  IGAA + WP+G+FGL S
Sbjct:   150 LTLRTEAIGAAVKGWPLGLFGLIS 173

 Score = 55 (24.4 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
 Identities = 11/15 (73%), Positives = 13/15 (86%)

Query:    45 RSISRPIRACRPSDQ 59
             R ISR IRAC+PSD+
Sbjct:    40 RWISRSIRACQPSDK 54


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       157   0.00079  106 3  11 22  0.42    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.47u 0.17s 14.64t   Elapsed:  00:00:01
  Total cpu time:  14.47u 0.17s 14.64t   Elapsed:  00:00:01
  Start:  Sat May 11 07:33:34 2013   End:  Sat May 11 07:33:35 2013

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