BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031571
         (157 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|F4IZC4|BASS4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic
           OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1
          Length = 436

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 80/134 (59%), Gaps = 33/134 (24%)

Query: 45  RSISRPIRACRPSDQ-------DF--------------------------ASSKGLNWAK 71
           R ISR IRAC+PSD+       DF                          AS++ L + K
Sbjct: 40  RWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGK 99

Query: 72  PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGA 131
            LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGA
Sbjct: 100 ELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGA 159

Query: 132 AAEAWPVGIFGLCS 145
           A + WP+G+FGL S
Sbjct: 160 AVKGWPLGLFGLIS 173


>sp|Q6ESG1|BASS4_ORYSJ Probable sodium/metabolite cotransporter BASS4, chloroplastic
           OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1
          Length = 423

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLCS 145
           P G+FGL S
Sbjct: 152 PAGLFGLAS 160


>sp|B8AJ09|BASS4_ORYSI Probable sodium/metabolite cotransporter BASS4, chloroplastic
           OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1
          Length = 423

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLCS 145
           P G+FGL S
Sbjct: 152 PAGLFGLAS 160


>sp|Q1J1H5|DCTA_DEIGD C4-dicarboxylate transport protein OS=Deinococcus geothermalis
           (strain DSM 11300) GN=dctA PE=3 SV=1
          Length = 442

 Score = 34.3 bits (77), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 90  VAFGFANPSLGCLADKYQLSKFSTF--AIFIVSGLTLRSGEIGA-AAEAWPVGIFGLCS- 145
           V FGFA   LG L  K  L+       A+F++ G  +R   IGA  A A+ +G +G+ + 
Sbjct: 157 VLFGFALTQLGTLGQKV-LAGIEAVNSAVFVILGFVMRLAPIGAFGAMAFTIGKYGVGTL 215

Query: 146 SQFCYLLHTFQS 157
           +Q  YL+  F +
Sbjct: 216 AQLAYLMVAFYA 227


>sp|P04197|MYB_DROME Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2
          Length = 657

 Score = 33.1 bits (74), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 17  MLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRP---IRACRPSDQDFASSKGLNWAKPL 73
           +LS+W  N  + A  + R  PF T +P + ++ P   ++    S+QD    +G    +P 
Sbjct: 526 LLSTWSSNHPYNAGSAKRIQPFETETPSKFLTSPGDILKDTLCSEQDLPFDEGRKENRPF 585


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,605,678
Number of Sequences: 539616
Number of extensions: 2126785
Number of successful extensions: 5004
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4999
Number of HSP's gapped (non-prelim): 7
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)