Query 031571
Match_columns 157
No_of_seqs 67 out of 69
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 16:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4821 Predicted Na+-dependen 99.8 4.4E-19 9.6E-24 151.1 8.2 91 63-153 6-100 (287)
2 PF13593 DUF4137: SBF-like CPA 99.5 1E-14 2.2E-19 124.6 1.1 75 80-155 1-79 (313)
3 COG0385 Predicted Na+-dependen 97.9 4.4E-06 9.5E-11 73.6 0.9 83 73-155 3-86 (319)
4 TIGR00832 acr3 arsenical-resis 97.1 0.00013 2.7E-09 63.3 -0.1 78 78-155 8-91 (328)
5 TIGR00841 bass bile acid trans 89.2 0.15 3.3E-06 43.2 0.7 43 113-155 14-56 (286)
6 PF14898 DUF4491: Domain of un 55.5 7.3 0.00016 29.6 1.5 45 82-129 6-50 (94)
7 COG0798 ACR3 Arsenite efflux p 44.1 16 0.00036 33.2 2.1 62 80-141 18-85 (342)
8 PF07172 GRP: Glycine rich pro 25.7 62 0.0014 24.0 2.3 19 78-96 3-21 (95)
9 PF09125 COX2-transmemb: Cytoc 23.3 66 0.0014 20.9 1.8 29 127-155 3-33 (38)
10 KOG4821 Predicted Na+-dependen 22.0 12 0.00026 33.0 -2.4 30 28-59 4-37 (287)
11 PF03956 DUF340: Membrane prot 20.1 22 0.00048 29.2 -1.2 62 84-147 3-67 (191)
No 1
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.78 E-value=4.4e-19 Score=151.06 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=86.8
Q ss_pred cccCccchHHHHHHHHhhhHHHHHHHHHHHHhhCCCC----ceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcChh
Q 031571 63 SSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPV 138 (157)
Q Consensus 63 ~~~~~~w~~~v~~Fli~nfLplaL~vavvlal~~P~p----G~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a 138 (157)
+..+..|.+|+.++..++|+.++...+++.+-+.|+. |++++||+++|+||++||++|||+||||||.+|+.|||-
T Consensus 6 ~~~r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~L 85 (287)
T KOG4821|consen 6 SLIRKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRL 85 (287)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCch
Confidence 4456689999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 031571 139 GIFGLCSSQFCYLLH 153 (157)
Q Consensus 139 ~iyGlvsIL~iTp~~ 153 (157)
-+|+++++|++||-.
T Consensus 86 hLFilI~~Ll~tPs~ 100 (287)
T KOG4821|consen 86 HLFILILSLLITPSI 100 (287)
T ss_pred HHHHHHHHHHHhHHH
Confidence 999999999999953
No 2
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=99.46 E-value=1e-14 Score=124.62 Aligned_cols=75 Identities=24% Similarity=0.421 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCceee----eeeeeeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhccccc
Q 031571 80 NFLPLALIGGVAFGFANPSLGCLA----DKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTF 155 (157)
Q Consensus 80 nfLplaL~vavvlal~~P~pG~i~----~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp~~gf 155 (157)
|||++++++++++|+++|.+|... .|+.+.|+ +++||+++|++|+|+|++++++||+..+++++++++++|++||
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~-v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~ 79 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYG-VALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGF 79 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHH-HHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998844 44555555 9999999999999999999999999999999999999999986
No 3
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.86 E-value=4.4e-06 Score=73.63 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=68.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCCceeeeeee-eeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhc
Q 031571 73 LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYL 151 (157)
Q Consensus 73 v~~Fli~nfLplaL~vavvlal~~P~pG~i~~eys-I~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp 151 (157)
..+++..+++...++..+++|...|..|.-..-.+ ..++++++||+-.|++|+.+|+++.++||+..+.|+++-..+.|
T Consensus 3 ~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP 82 (319)
T COG0385 3 LLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP 82 (319)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 45667677766667777777777777666555543 35899999999999999999999999999999999999999999
Q ss_pred cccc
Q 031571 152 LHTF 155 (157)
Q Consensus 152 ~~gf 155 (157)
++||
T Consensus 83 lla~ 86 (319)
T COG0385 83 LLAL 86 (319)
T ss_pred HHHH
Confidence 9986
No 4
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=97.08 E-value=0.00013 Score=63.30 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=60.7
Q ss_pred HhhhHHHHHHHHHHHHhhCCCCceeeeeee---e-eeeeEEeeeeecC--CccchHHHHHHHhcChhHHHHHHHHHHhhc
Q 031571 78 ADNFLPLALIGGVAFGFANPSLGCLADKYQ---L-SKFSTFAIFIVSG--LTLRSGEIGAAAEAWPVGIFGLCSSQFCYL 151 (157)
Q Consensus 78 i~nfLplaL~vavvlal~~P~pG~i~~eys---I-~y~ava~IFLISG--LtLkT~eL~~al~~W~a~iyGlvsIL~iTp 151 (157)
...|..++.+.++++|+.+|..+.....+. + -..+++.+|+..| ++|+.+|+++.+++|+..+.|++.-..+.|
T Consensus 8 ~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~P 87 (328)
T TIGR00832 8 LTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGP 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 446777788888899999999866554332 1 1233444455555 999999999999999999999999999999
Q ss_pred cccc
Q 031571 152 LHTF 155 (157)
Q Consensus 152 ~~gf 155 (157)
+++|
T Consensus 88 lla~ 91 (328)
T TIGR00832 88 FLMF 91 (328)
T ss_pred HHHH
Confidence 8876
No 5
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=89.16 E-value=0.15 Score=43.15 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=38.8
Q ss_pred EEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhccccc
Q 031571 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTF 155 (157)
Q Consensus 113 va~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp~~gf 155 (157)
.+++++..|++|+.+|+++.+++|+....+++.-+.+.|+++|
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~ 56 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGF 56 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999998875
No 6
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=55.49 E-value=7.3 Score=29.62 Aligned_cols=45 Identities=13% Similarity=0.362 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhCCCCceeeeeeeeeeeeEEeeeeecCCccchHHH
Q 031571 82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEI 129 (157)
Q Consensus 82 LplaL~vavvlal~~P~pG~i~~eysI~y~ava~IFLISGLtLkT~eL 129 (157)
+.+|+..++++|++-| ..+..||..++- .-.+||+.|+-.-...+
T Consensus 6 iiigi~tFliIG~fHp--iVIk~EYyfg~~-~W~~FL~~Gi~~~~~Sl 50 (94)
T PF14898_consen 6 IIIGIATFLIIGLFHP--IVIKGEYYFGTR-IWPIFLLAGIACIIASL 50 (94)
T ss_pred HHHHHHHHHHHHccCe--EEEEEEEecCCC-cHHHHHHHHHHHHHHHH
Confidence 5689999999999987 679999999874 77899999986644444
No 7
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=44.06 E-value=16 Score=33.19 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCceeeeeeeeeeee----EEeeeeec--CCccchHHHHHHHhcChhHHH
Q 031571 80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFS----TFAIFIVS--GLTLRSGEIGAAAEAWPVGIF 141 (157)
Q Consensus 80 nfLplaL~vavvlal~~P~pG~i~~eysI~y~a----va~IFLIS--GLtLkT~eL~~al~~W~a~iy 141 (157)
-|..++.++++.+|..+|......++.++...+ +.++..+= =++++=||++++.++|+.++.
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~l 85 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLIL 85 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHH
Confidence 368899999999999999987776665553322 22222221 256788999999988844333
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.65 E-value=62 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=14.5
Q ss_pred HhhhHHHHHHHHHHHHhhC
Q 031571 78 ADNFLPLALIGGVAFGFAN 96 (157)
Q Consensus 78 i~nfLplaL~vavvlal~~ 96 (157)
.|.+|+|+|+.|++|.++-
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4778999988887776653
No 9
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=23.28 E-value=66 Score=20.92 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=20.7
Q ss_pred HHHHHHHhcC--hhHHHHHHHHHHhhccccc
Q 031571 127 GEIGAAAEAW--PVGIFGLCSSQFCYLLHTF 155 (157)
Q Consensus 127 ~eL~~al~~W--~a~iyGlvsIL~iTp~~gf 155 (157)
.+..++++++ .+++||++.|+.+.-+.||
T Consensus 3 hk~hkai~aYEr~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 3 HKAHKAIEAYERGWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455667666 4788999998887766665
No 10
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=22.03 E-value=12 Score=32.99 Aligned_cols=30 Identities=7% Similarity=-0.261 Sum_probs=25.0
Q ss_pred CCCCceecCcceecC--C--CCccccceeecCCCch
Q 031571 28 RASGSLRFSPFVTFS--P--GRSISRPIRACRPSDQ 59 (157)
Q Consensus 28 ~~~~~~~~~~~~~~~--p--~~~~~~~i~a~~~s~q 59 (157)
+.+++++ ...++| | ++|+.+.|++|+.+|+
T Consensus 4 ~~~~~r~--i~~~R~~e~~~~~Wf~~~I~~~i~~aK 37 (287)
T KOG4821|consen 4 QYSLIRK--IWAHRVTEFLKSQWFFICIAILIVIAK 37 (287)
T ss_pred CCcchHH--HHHHHHHHHHhcchHHHHHHHhhhHhh
Confidence 3567777 777777 4 9999999999999998
No 11
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=20.05 E-value=22 Score=29.20 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCceeeeeeeeeeeeEEeeeeecCCccchH-HHHHHHh--cChhHHHHHHHHH
Q 031571 84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSG-EIGAAAE--AWPVGIFGLCSSQ 147 (157)
Q Consensus 84 laL~vavvlal~~P~pG~i~~eysI~y~ava~IFLISGLtLkT~-eL~~al~--~W~a~iyGlvsIL 147 (157)
++++.++++|++...+-... +.-..|.-.+.+|+ -|+++..+ |..+.++ +|++++..+++|+
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~-VGi~lG~~~~~l~~l~~~g~~~Llipl~tIl 67 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLI-DKISTYALYLLLFL-VGIDLGSNREILRQLRSLGKRALLIPLATIL 67 (191)
T ss_pred eeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46788999999998882222 33334444455554 59999876 5666664 7887776666654
Done!