Query 031571
Match_columns 157
No_of_seqs 67 out of 69
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 01:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.4 3.5E-08 1.2E-12 83.4 -0.4 84 69-155 8-91 (332)
2 2lcn_A WALP19-P10 peptide; pro 14.4 92 0.0031 17.7 1.7 18 80-97 3-20 (26)
3 3nsw_A Excretory-secretory pro 14.2 98 0.0034 22.5 2.3 37 95-131 55-105 (106)
4 2q0z_X Protein Pro2281; SEC63, 12.0 82 0.0028 25.8 1.5 40 93-133 11-52 (339)
5 2plg_A TLL0839 protein; hypoth 11.4 2.3E+02 0.008 21.9 3.8 33 103-135 105-137 (163)
6 1vf5_E Protein PET L; photosyn 10.7 2.4E+02 0.0082 16.8 2.8 20 77-96 5-24 (32)
7 2zt9_E Cytochrome B6-F complex 10.2 1.9E+02 0.0065 17.1 2.3 20 77-96 4-23 (31)
8 1b3t_A Protein (nuclear protei 6.0 2.8E+02 0.0095 21.5 2.1 34 97-136 89-122 (147)
9 3ewt_E Tumor necrosis factor r 5.8 2.8E+02 0.0096 15.5 1.5 11 70-80 13-23 (25)
10 2kzx_A Uncharacterized protein 5.7 2.5E+02 0.0084 20.3 1.6 17 118-134 99-115 (131)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.38 E-value=3.5e-08 Score=83.38 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=74.0
Q ss_pred chHHHHHHHHhhhHHHHHHHHHHHHhhCCCCceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHH
Q 031571 69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQF 148 (157)
Q Consensus 69 w~~~v~~Fli~nfLplaL~vavvlal~~P~pG~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~ 148 (157)
..+|+.+|+ ++|+++.+++++++|+++|..+.....+ -..+++++++..|++++.+|+++.+++|+..++++++-+.
T Consensus 8 ~l~~~~~~l-~~~~~l~i~~~~~lg~~~P~~~~~~~~~--i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 8 ILSKISSFI-GKTFSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHHHH-HHTHHHHHHHHHHHHHHCGGGTGGGGGG--HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHcchhhhhhHHH--HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 458888888 6899999999999999999997765432 3357889999999999999999999999999999999999
Q ss_pred hhccccc
Q 031571 149 CYLLHTF 155 (157)
Q Consensus 149 iTp~~gf 155 (157)
+.|+++|
T Consensus 85 i~Pll~~ 91 (332)
T 3zux_A 85 IMPATAW 91 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 2
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=14.41 E-value=92 Score=17.71 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHhhCC
Q 031571 80 NFLPLALIGGVAFGFANP 97 (157)
Q Consensus 80 nfLplaL~vavvlal~~P 97 (157)
-||-+++.-++.+|+-|-
T Consensus 3 wwlalalapalalalwwa 20 (26)
T 2lcn_A 3 WWLALALAPALALALWWA 20 (26)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 478888988888888664
No 3
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=14.18 E-value=98 Score=22.50 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=25.4
Q ss_pred hCCCCceeeeee-----------ee---eeeeEEeeeeecCCccchHHHHH
Q 031571 95 ANPSLGCLADKY-----------QL---SKFSTFAIFIVSGLTLRSGEIGA 131 (157)
Q Consensus 95 ~~P~pG~i~~ey-----------sI---~y~ava~IFLISGLtLkT~eL~~ 131 (157)
.||.+|.+|++. .+ +.---+.+=|.-||+-+.+|+.+
T Consensus 55 qwpsfgtlrddcgniqltadtdyvlgcksgnqdcfvklhdglsqkekdllk 105 (106)
T 3nsw_A 55 QWPSFGTLRDDCGNIQLTADTDYVLGCKSGNQDCFVKLHDGLSQKEKDLLK 105 (106)
T ss_dssp CCCSEEEEECSSCSCCCCTTEEEEEEEETTTEEEEEEEGGGCCHHHHHHHT
T ss_pred cCCcccccccccCceEEecccCEEEeecCCCcceEEEeccchhhhHHHHhc
Confidence 589999998763 22 11113556788999999888864
No 4
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=11.99 E-value=82 Score=25.85 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=5.6
Q ss_pred HhhCCCC-ceeeeeeeeeeeeEEeeee-ecCCccchHHHHHHH
Q 031571 93 GFANPSL-GCLADKYQLSKFSTFAIFI-VSGLTLRSGEIGAAA 133 (157)
Q Consensus 93 al~~P~p-G~i~~eysI~y~ava~IFL-ISGLtLkT~eL~~al 133 (157)
|.+.|+. |.+++.|.|++-.+..++- +.. .++.+++.+.+
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~-~~~~~~lL~il 52 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNA-KTKVRGLIEII 52 (339)
T ss_dssp ---------------------------------CCHHHHHHHH
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcc-cCCHHHHHHHH
Confidence 3456766 9999999998877665542 222 45555665554
No 5
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=11.43 E-value=2.3e+02 Score=21.90 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=28.8
Q ss_pred eeeeeeeeeeEEeeeeecCCccchHHHHHHHhc
Q 031571 103 ADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEA 135 (157)
Q Consensus 103 ~~eysI~y~ava~IFLISGLtLkT~eL~~al~~ 135 (157)
-+.|.|.-.-+.++|.+..-+|..+|+..++.+
T Consensus 105 ~arFaI~~n~V~~v~~r~ls~Ld~~E~~~aIt~ 137 (163)
T 2plg_A 105 EAHFAIAEEQVQVVASRTLGGITAGEISRLITI 137 (163)
T ss_dssp TCEEEEETTEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEEECCEEEEEEEEEcccCCHHHHHHHHHH
Confidence 347888778899999999999999999999853
No 6
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=10.69 E-value=2.4e+02 Score=16.81 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=15.0
Q ss_pred HHhhhHHHHHHHHHHHHhhC
Q 031571 77 AADNFLPLALIGGVAFGFAN 96 (157)
Q Consensus 77 li~nfLplaL~vavvlal~~ 96 (157)
+++-.+.+++..+++.|+++
T Consensus 5 ~i~yi~~l~~~f~iA~GL~f 24 (32)
T 1vf5_E 5 AVFYIVFIALFFGIAVGIIF 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888765
No 7
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=10.17 E-value=1.9e+02 Score=17.08 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHhhhHHHHHHHHHHHHhhC
Q 031571 77 AADNFLPLALIGGVAFGFAN 96 (157)
Q Consensus 77 li~nfLplaL~vavvlal~~ 96 (157)
+++-++.+++..+++.|+++
T Consensus 4 ~i~y~~~l~~~~~iA~GL~f 23 (31)
T 2zt9_E 4 IVAYIGFLALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777887787777653
No 8
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=5.97 E-value=2.8e+02 Score=21.52 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcC
Q 031571 97 PSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136 (157)
Q Consensus 97 P~pG~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W 136 (157)
|.||-++. +..+-+++||+.++ --|.+++|++.+
T Consensus 89 PqPgPlrE----S~~~yFlvFlqt~~--fAe~~kDAi~Dy 122 (147)
T 1b3t_A 89 PQPGPLRE----SIVCYFMVFLQTHI--FAEVLKDAIKDL 122 (147)
T ss_dssp CCCCTTCE----EEEEEEEEEESCHH--HHHHHHHHHHHH
T ss_pred CCCCcchh----heeeeeeeeeehhH--HHHHHHHHHHHH
Confidence 44566654 45667899999875 568888888654
No 9
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=5.75 E-value=2.8e+02 Score=15.50 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=9.1
Q ss_pred hHHHHHHHHhh
Q 031571 70 AKPLLKIAADN 80 (157)
Q Consensus 70 ~~~v~~Fli~n 80 (157)
++.+++|+++|
T Consensus 13 ~~~Vk~fvR~~ 23 (25)
T 3ewt_E 13 LSQVKGFVRKN 23 (26)
T ss_pred HHHHHHHHHHc
Confidence 47889999887
No 10
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=5.68 E-value=2.5e+02 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=15.0
Q ss_pred eecCCccchHHHHHHHh
Q 031571 118 IVSGLTLRSGEIGAAAE 134 (157)
Q Consensus 118 LISGLtLkT~eL~~al~ 134 (157)
.|||.|..++.++++++
T Consensus 99 aVSGATits~a~~~aV~ 115 (131)
T 2kzx_A 99 AISGATIKVKKFFDLAQ 115 (131)
T ss_dssp TTCSCCSCTHHHHHHHH
T ss_pred ceeccchhHHHHHHHHH
Confidence 38999999999999875
Done!