Query 031571
Match_columns 157
No_of_seqs 67 out of 69
Neff 3.5
Searched_HMMs 13730
Date Tue Mar 26 01:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031571.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031571hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kq1a_ b.38.1.2 (A:) Pleiotro 10.6 42 0.0031 20.9 1.0 14 113-126 16-29 (60)
2 d1u1sa1 b.38.1.2 (A:6-71) Plei 9.3 50 0.0036 21.0 1.0 14 113-126 16-29 (66)
3 d1xhna1 b.45.1.1 (A:13-182) Ce 8.7 49 0.0036 23.3 0.9 18 115-132 55-72 (170)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 6.1 1.6E+02 0.012 15.9 2.1 13 82-94 14-26 (32)
5 d1b3ta_ d.58.8.1 (A:) Epstein 5.9 1.3E+02 0.0097 21.5 2.1 34 97-136 89-122 (147)
6 d2e74d2 f.23.12.1 (D:12-45) IS 5.8 1.1E+02 0.008 17.0 1.2 19 80-98 9-27 (34)
7 d1oedb_ f.36.1.1 (B:) Acetylch 5.5 1.5E+02 0.011 20.6 2.2 24 68-93 211-234 (250)
8 d1rh5b_ f.23.28.1 (B:) Preprot 4.6 1.6E+02 0.011 17.9 1.5 30 72-101 25-54 (56)
9 d1q5na_ a.127.1.1 (A:) 3-carbo 4.5 1E+02 0.0073 24.1 0.6 39 118-156 343-381 (444)
10 d1rm4a2 d.81.1.1 (A:149-312) G 4.1 5E+02 0.036 18.0 4.3 49 88-136 61-113 (163)
No 1
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq {Staphylococcus aureus [TaxId: 1280]}
Probab=10.59 E-value=42 Score=20.90 Aligned_cols=14 Identities=14% Similarity=0.688 Sum_probs=11.3
Q ss_pred EEeeeeecCCccch
Q 031571 113 TFAIFIVSGLTLRS 126 (157)
Q Consensus 113 va~IFLISGLtLkT 126 (157)
-+-|||++|..|+-
T Consensus 16 ~VtifL~nGvkl~G 29 (60)
T d1kq1a_ 16 EVTVFFLNGFQMKG 29 (60)
T ss_dssp EEEEEETTSCEEEE
T ss_pred cEEEEEECCcEEEE
Confidence 46799999998863
No 2
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.34 E-value=50 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=11.1
Q ss_pred EEeeeeecCCccch
Q 031571 113 TFAIFIVSGLTLRS 126 (157)
Q Consensus 113 va~IFLISGLtLkT 126 (157)
-+.|||++|..|+-
T Consensus 16 ~VtifL~nGvkl~G 29 (66)
T d1u1sa1 16 PVSIYLVNGIKLQG 29 (66)
T ss_dssp CEEEEETTSCEEEE
T ss_pred cEEEEEEcCcEEEE
Confidence 35789999998863
No 3
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.71 E-value=49 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=16.2
Q ss_pred eeeeecCCccchHHHHHH
Q 031571 115 AIFIVSGLTLRSGEIGAA 132 (157)
Q Consensus 115 ~IFLISGLtLkT~eL~~a 132 (157)
-+|++|+|...|++|.++
T Consensus 55 P~~llS~la~ht~Nl~~~ 72 (170)
T d1xhna1 55 PYFYLSPLQLSVSNLQEN 72 (170)
T ss_dssp CEEEECTTSHHHHHHHHC
T ss_pred EEEEEcChhHhHHHHhhC
Confidence 589999999999999875
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.07 E-value=1.6e+02 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q 031571 82 LPLALIGGVAFGF 94 (157)
Q Consensus 82 LplaL~vavvlal 94 (157)
|+.|.++++++|.
T Consensus 14 lffgiavgiifai 26 (32)
T d2e74e1 14 LFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhheeeE
Confidence 4455556666554
No 5
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=5.87 E-value=1.3e+02 Score=21.47 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.7
Q ss_pred CCCceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcC
Q 031571 97 PSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136 (157)
Q Consensus 97 P~pG~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W 136 (157)
|.||-++. +..|-+++||+.++ --|.+++|++.+
T Consensus 89 PqPgPl~E----S~~~yFlvFlqt~~--fAe~~kDAi~Dy 122 (147)
T d1b3ta_ 89 PQPGPLRE----SIVCYFMVFLQTHI--FAEVLKDAIKDL 122 (147)
T ss_dssp CCCCTTCE----EEEEEEEEEESCHH--HHHHHHHHHHHH
T ss_pred CCCCcchh----heeeeeeeeeehhH--HHHHHHHHHHHH
Confidence 44466654 45667899999875 568888888654
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.76 E-value=1.1e+02 Score=17.01 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHhhCCC
Q 031571 80 NFLPLALIGGVAFGFANPS 98 (157)
Q Consensus 80 nfLplaL~vavvlal~~P~ 98 (157)
|.|-.|-+.++++|-++|.
T Consensus 9 nlltfgt~tg~alg~lypv 27 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYPL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhhH
Confidence 6677888899999998884
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.52 E-value=1.5e+02 Score=20.61 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=13.5
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHHHH
Q 031571 68 NWAKPLLKIAADNFLPLALIGGVAFG 93 (157)
Q Consensus 68 ~w~~~v~~Fli~nfLplaL~vavvla 93 (157)
-| +...-++|..|++.|.++++++
T Consensus 211 EW--~~vA~VlDRlfl~lF~l~~vi~ 234 (250)
T d1oedb_ 211 DW--QYVAMVADRLFLYVFFVICSIG 234 (250)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 46 4556677888888777766554
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.63 E-value=1.6e+02 Score=17.88 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=20.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCce
Q 031571 72 PLLKIAADNFLPLALIGGVAFGFANPSLGC 101 (157)
Q Consensus 72 ~v~~Fli~nfLplaL~vavvlal~~P~pG~ 101 (157)
++..-.---++.+|++.+++-....|-+|.
T Consensus 25 ~ia~v~~iG~~i~G~IGf~I~li~~~i~~i 54 (56)
T d1rh5b_ 25 AVAKVTALGISLLGIIGYIIHVPATYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555667888888888877666554443
No 9
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Probab=4.54 E-value=1e+02 Score=24.10 Aligned_cols=39 Identities=8% Similarity=-0.064 Sum_probs=25.2
Q ss_pred eecCCccchHHHHHHHhcChhHHHHHHHHHHhhcccccc
Q 031571 118 IVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQ 156 (157)
Q Consensus 118 LISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp~~gf~ 156 (157)
++.||+...+.+.+++++=...++.-.-.+.+.|-+||+
T Consensus 343 ~l~~l~vn~erm~~nle~s~~~i~se~~~~~L~~~ig~~ 381 (444)
T d1q5na_ 343 VLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPHMGRL 381 (444)
T ss_dssp HHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHHHCHH
T ss_pred HHHHhcchhhHHHHHHHhccChHHHHHHHHHhccCCCHH
Confidence 479999999999999974323333333334445666664
No 10
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=4.10 E-value=5e+02 Score=17.96 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHhhCCCC-ceeeee-eee--eeeeEEeeeeecCCccchHHHHHHHhcC
Q 031571 88 GGVAFGFANPSL-GCLADK-YQL--SKFSTFAIFIVSGLTLRSGEIGAAAEAW 136 (157)
Q Consensus 88 vavvlal~~P~p-G~i~~e-ysI--~y~ava~IFLISGLtLkT~eL~~al~~W 136 (157)
.+=+++...|++ |++-+. +.+ .-++++=.-+...=....+|+.++++..
T Consensus 61 a~kai~~vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~a 113 (163)
T d1rm4a2 61 AAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 113 (163)
T ss_dssp HHHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCcceEEEecCCCCceeEEEEEeccCCCCHHHHHHHHHHH
Confidence 344677888988 777554 333 6666666677778888889999988653
Done!