Query 031572
Match_columns 157
No_of_seqs 136 out of 317
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 16:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 6E-52 1.3E-56 309.1 9.3 101 10-110 1-101 (101)
2 COG3416 Uncharacterized protei 90.4 3.6 7.8E-05 35.4 9.8 68 50-117 11-78 (233)
3 PF11333 DUF3135: Protein of u 83.1 5.3 0.00012 29.1 6.0 66 34-103 15-82 (83)
4 PF09849 DUF2076: Uncharacteri 80.1 21 0.00045 30.8 9.5 63 50-112 11-73 (247)
5 PF09006 Surfac_D-trimer: Lung 78.7 5 0.00011 26.7 4.2 27 89-115 1-27 (46)
6 PRK10265 chaperone-modulator p 78.7 4.6 9.9E-05 29.7 4.5 32 84-115 68-99 (101)
7 PF05308 Mito_fiss_reg: Mitoch 77.2 7.1 0.00015 33.6 5.9 25 94-118 122-146 (253)
8 PF13334 DUF4094: Domain of un 74.2 3.1 6.8E-05 30.8 2.6 24 86-109 72-95 (95)
9 PF07106 TBPIP: Tat binding pr 73.3 2.9 6.3E-05 32.8 2.4 82 34-115 18-107 (169)
10 PF12097 DUF3573: Protein of u 64.5 8 0.00017 35.4 3.5 23 87-109 42-64 (383)
11 PF06698 DUF1192: Protein of u 61.8 17 0.00036 25.2 4.0 24 89-112 23-46 (59)
12 COG5509 Uncharacterized small 58.7 19 0.00042 25.5 3.9 24 89-112 27-50 (65)
13 PLN02523 galacturonosyltransfe 56.4 35 0.00076 32.9 6.4 54 53-111 145-200 (559)
14 cd04766 HTH_HspR Helix-Turn-He 54.3 24 0.00052 24.9 3.9 30 81-111 60-89 (91)
15 PF04728 LPP: Lipoprotein leuc 53.7 28 0.0006 23.9 4.0 23 89-111 12-34 (56)
16 PF12325 TMF_TATA_bd: TATA ele 52.0 31 0.00067 26.6 4.5 29 85-113 14-42 (120)
17 PF13591 MerR_2: MerR HTH fami 50.9 20 0.00043 25.4 3.1 22 86-107 62-83 (84)
18 PF04977 DivIC: Septum formati 50.7 25 0.00055 23.4 3.4 25 89-113 26-50 (80)
19 PF06305 DUF1049: Protein of u 46.6 50 0.0011 21.7 4.3 24 89-112 43-66 (68)
20 cd01111 HTH_MerD Helix-Turn-He 46.2 74 0.0016 23.4 5.6 29 85-113 78-106 (107)
21 PF07334 IFP_35_N: Interferon- 44.1 34 0.00073 24.9 3.4 25 89-113 2-26 (76)
22 PF15300 INT_SG_DDX_CT_C: INTS 42.2 27 0.00058 24.6 2.5 28 49-76 23-52 (65)
23 KOG4552 Vitamin-D-receptor int 41.8 61 0.0013 28.3 5.1 48 51-106 59-107 (272)
24 PRK00888 ftsB cell division pr 41.4 50 0.0011 24.6 4.1 21 89-109 29-49 (105)
25 PHA02047 phage lambda Rz1-like 40.7 66 0.0014 24.6 4.6 31 84-114 18-54 (101)
26 TIGR02209 ftsL_broad cell divi 40.6 49 0.0011 22.6 3.7 28 87-114 31-58 (85)
27 PF14282 FlxA: FlxA-like prote 40.2 49 0.0011 24.6 3.9 25 88-112 52-76 (106)
28 PF04706 Dickkopf_N: Dickkopf 40.2 18 0.00038 24.3 1.3 18 7-24 19-36 (52)
29 PF04977 DivIC: Septum formati 38.6 85 0.0018 20.8 4.5 26 88-113 18-43 (80)
30 PF14282 FlxA: FlxA-like prote 38.5 40 0.00086 25.1 3.1 23 86-108 18-40 (106)
31 PF10883 DUF2681: Protein of u 38.3 62 0.0013 23.9 4.1 26 89-114 32-57 (87)
32 PHA02562 46 endonuclease subun 38.2 55 0.0012 29.5 4.6 25 27-51 141-165 (562)
33 PF04012 PspA_IM30: PspA/IM30 38.0 90 0.002 25.1 5.4 42 65-113 8-49 (221)
34 PF14071 YlbD_coat: Putative c 38.0 1.1E+02 0.0024 24.1 5.6 26 90-115 80-105 (124)
35 PF08227 DASH_Hsk3: DASH compl 37.7 70 0.0015 21.0 3.8 26 88-113 3-28 (45)
36 PF06696 Strep_SA_rep: Strepto 37.5 87 0.0019 18.3 3.9 22 92-113 3-24 (25)
37 PF04508 Pox_A_type_inc: Viral 36.6 54 0.0012 18.9 2.8 18 89-106 3-20 (23)
38 PRK00451 glycine dehydrogenase 36.5 27 0.00059 30.6 2.3 35 28-63 2-36 (447)
39 PF12808 Mto2_bdg: Micro-tubul 36.3 1.4E+02 0.0029 20.2 5.8 43 64-107 7-49 (52)
40 PF03242 LEA_3: Late embryogen 36.1 15 0.00032 27.4 0.5 20 71-90 58-77 (93)
41 PF11853 DUF3373: Protein of u 36.0 67 0.0015 30.5 4.9 31 80-111 18-48 (489)
42 PRK10803 tol-pal system protei 35.9 57 0.0012 27.7 4.1 27 87-113 54-80 (263)
43 PF12325 TMF_TATA_bd: TATA ele 35.6 78 0.0017 24.4 4.4 28 86-113 29-56 (120)
44 COG4985 ABC-type phosphate tra 35.5 54 0.0012 29.0 3.9 65 49-120 189-256 (289)
45 PF13600 DUF4140: N-terminal d 34.6 77 0.0017 22.6 4.1 28 86-113 69-96 (104)
46 PF06295 DUF1043: Protein of u 34.5 72 0.0016 24.4 4.1 24 89-112 27-50 (128)
47 PF11336 DUF3138: Protein of u 34.3 50 0.0011 31.4 3.7 26 86-111 24-49 (514)
48 PF04420 CHD5: CHD5-like prote 34.0 61 0.0013 25.6 3.7 28 85-112 64-91 (161)
49 PF06295 DUF1043: Protein of u 33.1 56 0.0012 25.0 3.3 22 94-115 25-46 (128)
50 PF12938 M_domain: M domain of 31.9 1.1E+02 0.0024 26.4 5.2 27 86-112 184-210 (235)
51 PF11471 Sugarporin_N: Maltopo 31.6 1E+02 0.0022 21.1 4.0 21 92-112 30-50 (60)
52 KOG4196 bZIP transcription fac 31.1 81 0.0018 25.3 3.9 54 61-114 53-108 (135)
53 smart00150 SPEC Spectrin repea 31.0 1.5E+02 0.0033 19.3 4.9 36 79-114 23-58 (101)
54 PF07996 T4SS: Type IV secreti 31.0 1.3E+02 0.0029 23.5 5.2 49 88-143 20-70 (195)
55 PLN02742 Probable galacturonos 30.0 1.3E+02 0.0028 29.0 5.8 47 61-111 132-178 (534)
56 PRK00736 hypothetical protein; 29.5 1.9E+02 0.0042 19.9 5.3 24 88-111 27-50 (68)
57 PRK09039 hypothetical protein; 29.5 74 0.0016 28.2 3.9 24 88-111 138-161 (343)
58 PF04728 LPP: Lipoprotein leuc 29.1 1.2E+02 0.0027 20.8 4.1 23 89-111 19-41 (56)
59 smart00338 BRLZ basic region l 29.0 1.5E+02 0.0032 19.6 4.4 27 87-113 33-59 (65)
60 PF07820 TraC: TraC-like prote 28.6 1E+02 0.0022 23.3 3.8 22 89-110 4-25 (92)
61 PF05120 GvpG: Gas vesicle pro 28.5 69 0.0015 23.2 2.9 34 80-113 7-40 (79)
62 PF15397 DUF4618: Domain of un 28.5 82 0.0018 27.5 3.9 56 50-113 52-107 (258)
63 PRK10963 hypothetical protein; 28.5 1.7E+02 0.0037 24.2 5.6 55 49-112 6-62 (223)
64 cd00089 HR1 Protein kinase C-r 28.4 1.5E+02 0.0032 20.1 4.4 28 87-114 42-69 (72)
65 PF14197 Cep57_CLD_2: Centroso 28.0 1.5E+02 0.0033 20.7 4.5 31 84-114 37-67 (69)
66 PF04340 DUF484: Protein of un 27.7 1.2E+02 0.0025 24.8 4.5 56 49-113 9-66 (225)
67 KOG1655 Protein involved in va 27.2 1.4E+02 0.003 25.7 4.9 52 42-113 1-52 (218)
68 PF08657 DASH_Spc34: DASH comp 27.0 1.9E+02 0.004 25.1 5.8 35 79-113 172-206 (259)
69 PF06818 Fez1: Fez1; InterPro 26.8 1.1E+02 0.0023 26.0 4.1 27 86-112 9-35 (202)
70 PF05983 Med7: MED7 protein; 26.5 2.3E+02 0.0049 22.6 5.8 26 87-112 131-156 (162)
71 TIGR03021 pilP_fam type IV pil 26.5 1.1E+02 0.0025 23.4 4.0 24 86-109 4-27 (119)
72 PRK11677 hypothetical protein; 26.3 84 0.0018 24.8 3.3 24 88-111 30-53 (134)
73 PRK00295 hypothetical protein; 26.2 1.4E+02 0.003 20.6 4.0 24 88-111 27-50 (68)
74 PF15483 DUF4641: Domain of un 26.2 72 0.0016 30.0 3.3 30 83-113 415-444 (445)
75 cd00584 Prefoldin_alpha Prefol 25.9 1.4E+02 0.0031 22.0 4.4 26 88-113 7-32 (129)
76 PRK02793 phi X174 lysis protei 25.6 1.4E+02 0.0031 20.8 4.0 24 88-111 30-53 (72)
77 PRK11677 hypothetical protein; 25.4 1.6E+02 0.0034 23.3 4.6 22 94-115 29-50 (134)
78 KOG0242 Kinesin-like protein [ 25.3 1.4E+02 0.003 29.2 5.2 62 45-106 282-364 (675)
79 PF12718 Tropomyosin_1: Tropom 25.3 1E+02 0.0023 24.0 3.6 26 88-113 36-61 (143)
80 PRK14623 hypothetical protein; 25.3 1.2E+02 0.0025 23.0 3.8 24 89-112 3-26 (106)
81 PLN03188 kinesin-12 family pro 24.8 2.6E+02 0.0056 29.9 7.1 65 46-110 386-469 (1320)
82 PRK01203 prefoldin subunit alp 24.6 1.3E+02 0.0029 23.7 4.1 27 88-114 8-34 (130)
83 PRK14625 hypothetical protein; 24.5 1.2E+02 0.0027 23.0 3.8 24 89-112 4-27 (109)
84 PF11387 DUF2795: Protein of u 24.5 82 0.0018 20.0 2.4 31 31-61 6-36 (44)
85 PF00172 Zn_clus: Fungal Zn(2) 24.4 45 0.00097 20.3 1.1 15 9-23 1-15 (40)
86 PF10458 Val_tRNA-synt_C: Valy 24.1 1.5E+02 0.0032 20.0 3.8 23 89-111 6-28 (66)
87 PF13600 DUF4140: N-terminal d 24.0 1.5E+02 0.0032 21.1 4.0 25 88-112 78-102 (104)
88 KOG4098 Molecular chaperone Pr 23.5 2.4E+02 0.0052 22.8 5.4 61 49-109 49-115 (140)
89 PF05465 Halo_GVPC: Halobacter 23.5 1.5E+02 0.0031 18.0 3.3 26 89-114 1-26 (32)
90 PRK14626 hypothetical protein; 23.4 1.5E+02 0.0032 22.5 4.0 26 87-112 5-30 (110)
91 PRK04406 hypothetical protein; 23.2 1.6E+02 0.0036 20.8 4.0 24 88-111 33-56 (75)
92 PF04697 Pinin_SDK_N: pinin/SD 23.2 1.4E+02 0.0031 23.9 4.0 30 88-117 4-33 (134)
93 PRK02119 hypothetical protein; 23.1 1.7E+02 0.0036 20.5 4.0 24 88-111 31-54 (73)
94 PF07716 bZIP_2: Basic region 22.9 2.1E+02 0.0045 18.4 4.2 24 89-112 27-50 (54)
95 TIGR00293 prefoldin, archaeal 22.9 2E+02 0.0044 21.1 4.6 27 88-114 7-33 (126)
96 PF04102 SlyX: SlyX; InterPro 22.7 1.3E+02 0.0027 20.7 3.3 23 89-111 27-49 (69)
97 PF08537 NBP1: Fungal Nap bind 22.7 1.1E+02 0.0024 27.7 3.7 22 89-110 184-205 (323)
98 PRK14127 cell division protein 22.5 2E+02 0.0042 22.0 4.5 27 87-113 44-70 (109)
99 PRK14622 hypothetical protein; 22.5 1.4E+02 0.0031 22.3 3.7 24 89-112 3-26 (103)
100 PRK10884 SH3 domain-containing 22.5 1.3E+02 0.0028 25.1 3.8 24 89-112 134-157 (206)
101 COG3524 KpsE Capsule polysacch 22.3 1.1E+02 0.0025 28.0 3.7 57 53-109 167-245 (372)
102 cd00890 Prefoldin Prefoldin is 22.2 1.8E+02 0.004 20.9 4.3 26 88-113 7-32 (129)
103 PRK00587 hypothetical protein; 22.0 1.5E+02 0.0033 22.2 3.8 25 89-113 3-27 (99)
104 PF10481 CENP-F_N: Cenp-F N-te 22.0 2E+02 0.0044 25.9 5.1 30 83-112 98-127 (307)
105 PF08900 DUF1845: Domain of un 21.6 4.8E+02 0.01 21.7 7.1 40 75-116 52-91 (217)
106 cd04772 HTH_TioE_rpt1 First He 21.5 2.2E+02 0.0047 20.5 4.5 24 87-110 76-99 (99)
107 PRK03762 hypothetical protein; 21.5 1.6E+02 0.0034 22.2 3.8 23 89-111 7-29 (103)
108 COG3105 Uncharacterized protei 21.5 1.8E+02 0.0039 23.4 4.3 24 90-113 37-60 (138)
109 TIGR02894 DNA_bind_RsfA transc 21.3 1.6E+02 0.0035 24.2 4.1 25 89-113 113-137 (161)
110 PF14500 MMS19_N: Dos2-interac 21.1 3.8E+02 0.0083 22.8 6.6 55 43-103 202-259 (262)
111 PF09789 DUF2353: Uncharacteri 21.1 1.3E+02 0.0029 26.9 3.9 34 82-115 191-224 (319)
112 PF03955 Adeno_PIX: Adenovirus 21.0 1.8E+02 0.0039 22.5 4.1 24 89-112 85-108 (109)
113 COG3879 Uncharacterized protei 21.0 1.3E+02 0.0027 26.3 3.6 45 68-114 40-84 (247)
114 COG0718 Uncharacterized protei 21.0 1.5E+02 0.0034 22.5 3.7 36 87-125 5-40 (105)
115 PRK13169 DNA replication intia 20.9 2.3E+02 0.005 21.6 4.6 20 90-109 11-30 (110)
116 PRK14127 cell division protein 20.9 1.4E+02 0.0029 22.9 3.4 29 87-115 37-65 (109)
117 PRK00153 hypothetical protein; 20.8 1.7E+02 0.0036 21.4 3.8 25 89-113 5-29 (104)
118 TIGR00293 prefoldin, archaeal 20.6 1.4E+02 0.0031 21.9 3.4 20 89-108 15-34 (126)
119 PRK09413 IS2 repressor TnpA; R 20.6 1.8E+02 0.004 21.5 4.0 25 89-113 80-104 (121)
120 COG0339 Dcp Zn-dependent oligo 20.5 47 0.001 32.8 1.0 29 23-51 353-383 (683)
121 PRK14624 hypothetical protein; 20.3 1.7E+02 0.0036 22.5 3.8 25 88-112 7-31 (115)
122 PF05190 MutS_IV: MutS family 20.2 2.4E+02 0.0053 18.8 4.3 32 84-115 1-32 (92)
123 PF12709 Kinetocho_Slk19: Cent 20.2 3.3E+02 0.0071 20.3 5.2 25 87-111 49-73 (87)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=6e-52 Score=309.06 Aligned_cols=101 Identities=65% Similarity=1.168 Sum_probs=99.6
Q ss_pred CChhhhhhhhCCCCCCccccCCCCCCchhhhHHHHhhccchHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHH
Q 031572 10 PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAI 89 (157)
Q Consensus 10 ~CAACK~lRRkC~~~CilAPYFP~~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I 89 (157)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031572 90 SVLQRQVMRLQRELDATNADL 110 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~L 110 (157)
+.|++||+++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.38 E-value=3.6 Score=35.37 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=58.1
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 031572 50 NVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNE 117 (157)
Q Consensus 50 Nv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~ 117 (157)
|+..-|+......|+..++.||-||-++.-|--|=-+-.|..+++-|+.++.||+.++.+|+.....+
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444566667799999999999999999999999999999999999999999999999998775543
No 3
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=83.09 E-value=5.3 Score=29.07 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=51.3
Q ss_pred CCchhhhHHHHhhccchHHHHHHhcCCcch--HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 031572 34 EEPQKFVNVHKIFGASNVSKLLNEVLPHQR--EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQREL 103 (157)
Q Consensus 34 ~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R--~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL 103 (157)
++|+.|....+ .-+-.++...|++.+ -.++.+-|=---.|.++|+.-|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888887654 456678888888654 4566666666678899999999999999999988887655
No 4
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=80.06 E-value=21 Score=30.78 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=56.2
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 50 NVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 50 Nv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
++..-|+.+....|+.-++.||-|+-.|.-|-+|=-+-.|..++.-|++++++|+.++++|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557777778999999999999999999999999999999999999999999999999875
No 5
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=78.74 E-value=5 Score=26.73 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
|..|.+|+..|+.+|..+++.+..|.-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999998854
No 6
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=78.65 E-value=4.6 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 84 GCVGAISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 84 Gc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
-.+++|..|-.||++|++|+...+++|.+|..
T Consensus 68 ~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 68 PGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34889999999999999999999999998854
No 7
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=77.22 E-value=7.1 Score=33.63 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCC
Q 031572 94 RQVMRLQRELDATNADLIRYACNEM 118 (157)
Q Consensus 94 ~qi~~lq~EL~~~~~~L~~~~~~~~ 118 (157)
++|..||.||..+++|||+++..+-
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6788899999999999999975433
No 8
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=74.22 E-value=3.1 Score=30.84 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
.-.|..|...|..||.||++++++
T Consensus 72 h~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 72 HEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446778888899999999888763
No 9
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.35 E-value=2.9 Score=32.79 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=53.3
Q ss_pred CCchhhhHHHHhhccchHHHHHHhcCCcchH---HHHHHHHHHHHhhccCCCCc-----hhHHHHHHHHHHHHHHHHHHH
Q 031572 34 EEPQKFVNVHKIFGASNVSKLLNEVLPHQRE---DAVNSLAYEAEARLKDPVYG-----CVGAISVLQRQVMRLQRELDA 105 (157)
Q Consensus 34 ~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R~---~a~~SL~YEA~aR~rDPVyG-----c~G~I~~Lq~qi~~lq~EL~~ 105 (157)
.-..-|.|+|.-||-+.|.|.|..|-.+.+- ..=.+.||=++--.-+-+.. -=.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346799999999999999999998654321 22233445444332221111 123577888888888888888
Q ss_pred HHHHHHhhhh
Q 031572 106 TNADLIRYAC 115 (157)
Q Consensus 106 ~~~~L~~~~~ 115 (157)
++++|..+..
T Consensus 98 l~~eL~~L~~ 107 (169)
T PF07106_consen 98 LEAELASLSS 107 (169)
T ss_pred HHHHHHHHhc
Confidence 8888876643
No 10
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=64.50 E-value=8 Score=35.45 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
-.|.+||+||++||+||..++++
T Consensus 42 ~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 42 QEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999988776
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.82 E-value=17 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
|-.|+..|..|++|++.+++++.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887764
No 12
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=58.70 E-value=19 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+-.|.+.|..||.|++.+++||.+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777764
No 13
>PLN02523 galacturonosyltransferase
Probab=56.36 E-value=35 Score=32.88 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHhcCC--cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 53 KLLNEVLP--HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 53 k~L~~l~~--~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
..|.+|++ .+|-.+|+.++++|.. +|-|..+|.+|+..|..+++++.+++.+=+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665 4677999999999993 444678999999999999999999886643
No 14
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=54.27 E-value=24 Score=24.87 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 81 PVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 81 PVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|+-|. ..|..|..|++.|++||+..+++|.
T Consensus 60 ~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 60 NLAGV-KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 3444589999999999999988875
No 15
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.69 E-value=28 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|+.|..+|.+|..++..++.++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666655543
No 16
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.01 E-value=31 Score=26.64 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+.+|..|+.+|.+++.|+..++.+|.+.
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777666654
No 17
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=50.90 E-value=20 Score=25.36 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
+++|.+|-.+|..|++||...+
T Consensus 62 i~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 62 IALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999999998765
No 18
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.65 E-value=25 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|..|+.++++++++.+..++++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555544
No 19
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.58 E-value=50 Score=21.70 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
...+++++.++++|++..+.|+..
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888763
No 20
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=46.19 E-value=74 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|...+..++.+|++.+++|+.++++|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888889999999999999888754
No 21
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.12 E-value=34 Score=24.86 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|..|+.+..+|+.||..+.++|..-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888888777777644
No 22
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=42.19 E-value=27 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.4
Q ss_pred chHHHHHHhc--CCcchHHHHHHHHHHHHh
Q 031572 49 SNVSKLLNEV--LPHQREDAVNSLAYEAEA 76 (157)
Q Consensus 49 sNv~k~L~~l--~~~~R~~a~~SL~YEA~a 76 (157)
+.|.++|+.+ |.+.|...+..++.||.-
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~R 52 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAAR 52 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 4789999998 678999999999999963
No 23
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=41.81 E-value=61 Score=28.29 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031572 51 VSKLLNEVLP-HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDAT 106 (157)
Q Consensus 51 v~k~L~~l~~-~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~ 106 (157)
+.+||+-.++ .+|+.+|+.|--+-+.|.+ .|.+||.++...+.-|..+
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtta 107 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTTA 107 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHH
Confidence 4455555554 4578999998666666543 5999999998877666543
No 24
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.40 E-value=50 Score=24.60 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
+..+++|++.+++|++.++++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~ 49 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKAR 49 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 25
>PHA02047 phage lambda Rz1-like protein
Probab=40.72 E-value=66 Score=24.64 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=21.6
Q ss_pred chhHHHH------HHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 84 GCVGAIS------VLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 84 Gc~G~I~------~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|.+|.+. .-++..+++.++|+.++.++.+|+
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q 54 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQ 54 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 335677888888888888888774
No 26
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.60 E-value=49 Score=22.63 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.-+..+++++.+++.|-+..+.++....
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666666666666666665443
No 27
>PF14282 FlxA: FlxA-like protein
Probab=40.25 E-value=49 Score=24.56 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
-+..|+.||..|+++|..++.+...
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555543
No 28
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=40.22 E-value=18 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.800 Sum_probs=15.5
Q ss_pred CCCCChhhhhhhhCCCCC
Q 031572 7 SNAPCAACKCLRRKCMPD 24 (157)
Q Consensus 7 ~~~~CAACK~lRRkC~~~ 24 (157)
....|..||-+|++|..|
T Consensus 19 ~~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 19 FESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CCccChhhccCCCCCCCC
Confidence 348999999999999864
No 29
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.56 E-value=85 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..+++++..++.+++..+++....
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777766544
No 30
>PF14282 FlxA: FlxA-like protein
Probab=38.47 E-value=40 Score=25.05 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~ 108 (157)
...|..|+.||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56778888888888888776655
No 31
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.35 E-value=62 Score=23.93 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
+..|+.+.++++.|.+.+.+++-.|.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888887663
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.18 E-value=55 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=13.5
Q ss_pred cccCCCCCCchhhhHHHHhhccchH
Q 031572 27 FAPYFPPEEPQKFVNVHKIFGASNV 51 (157)
Q Consensus 27 lAPYFP~~~~~~F~~vhkvFG~sNv 51 (157)
|.|.++....++-..+.++||....
T Consensus 141 f~~f~~~~~~er~~il~~l~~~~~~ 165 (562)
T PHA02562 141 YVPFMQLSAPARRKLVEDLLDISVL 165 (562)
T ss_pred hhhHhcCChHhHHHHHHHHhCCHHH
Confidence 4444454444555556666665543
No 33
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=38.04 E-value=90 Score=25.12 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 65 DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 65 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..|+..
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~~ 49 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALARV 49 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665 455555666666666666655544
No 34
>PF14071 YlbD_coat: Putative coat protein
Probab=37.97 E-value=1.1e+02 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.263 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 90 SVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
..||.+|..++.-|.+++.=|..+..
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~ 105 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQG 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888888876665543
No 35
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=37.73 E-value=70 Score=21.01 Aligned_cols=26 Identities=31% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-+++|..|+++|++-|+.+.+.|...
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36788889999988888888877543
No 36
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=37.46 E-value=87 Score=18.31 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 031572 92 LQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 92 Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..+.+-|+||+.++.+++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4567788888888888877643
No 37
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=36.60 E-value=54 Score=18.88 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDAT 106 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~ 106 (157)
|..|+..|..|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888888753
No 38
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=36.50 E-value=27 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=27.8
Q ss_pred ccCCCCCCchhhhHHHHhhccchHHHHHHhcCCcch
Q 031572 28 APYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQR 63 (157)
Q Consensus 28 APYFP~~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R 63 (157)
-||.|.. ++.-..+-+.||.++|-.+...+|.+.|
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3999975 7888889999999999887777765444
No 39
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=36.32 E-value=1.4e+02 Score=20.21 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031572 64 EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 64 ~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
.+...-|.-|=++|..|+ .|+---|..|..+...|+++|...+
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777778899998 5677778888888888888777554
No 40
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=36.09 E-value=15 Score=27.42 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHhhccCCCCchhHHHH
Q 031572 71 AYEAEARLKDPVYGCVGAIS 90 (157)
Q Consensus 71 ~YEA~aR~rDPVyGc~G~I~ 90 (157)
-.|-..|+.|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 45667899999999987654
No 41
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.00 E-value=67 Score=30.48 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 80 DPVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 80 DPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.|.....--+..+| ||++|++||+.+++|+.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 34444445555566 89999999988888865
No 42
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.87 E-value=57 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
..+..|++||+++|.|++.++-++...
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 356789999999999999998777643
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.63 E-value=78 Score=24.42 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
=|-|..|++++..++.+-+.+.++|.+.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999988765
No 44
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=35.49 E-value=54 Score=28.96 Aligned_cols=65 Identities=28% Similarity=0.275 Sum_probs=42.4
Q ss_pred chHHHHHHhcCCcc-hHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCCC
Q 031572 49 SNVSKLLNEVLPHQ-REDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA--CNEMPP 120 (157)
Q Consensus 49 sNv~k~L~~l~~~~-R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~--~~~~~~ 120 (157)
+.|..-|+.|--++ |-.+-.-|--|+..+. +..-+.||.+++.|+.||+..++++.++. -.||+.
T Consensus 189 ~~in~qlErLRL~krrlQl~g~Ld~~~q~~~-------~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G 256 (289)
T COG4985 189 RVINSQLERLRLEKRRLQLNGQLDDEFQQHY-------VAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQG 256 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCC
Confidence 33444445554333 3444444444555543 56778999999999999999999999874 235544
No 45
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.62 E-value=77 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
--.+..|+.+|+.++.++..+++++...
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367778888888888888777776644
No 46
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.48 E-value=72 Score=24.40 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
...|+++|++.+.||+.-+++|..
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777666654
No 47
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.34 E-value=50 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.-.|..||.||+.||.|+..++++|+
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999987
No 48
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.05 E-value=61 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
=+.--.+|+++++++++||+..++++..
T Consensus 64 eFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 64 EFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778999999999999999888763
No 49
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.09 E-value=56 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 031572 94 RQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 94 ~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
++..+|+.||+.++.+|..|..
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~ 46 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQ 46 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999998864
No 50
>PF12938 M_domain: M domain of GW182
Probab=31.88 E-value=1.1e+02 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+-.|.++++||..|+.+|++-++-+.+
T Consensus 184 ~~~I~~~kqqI~~lqnQIa~qQal~vK 210 (235)
T PF12938_consen 184 AVQINKTKQQIQQLQNQIAAQQALYVK 210 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 556888888888888888875544443
No 51
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.57 E-value=1e+02 Score=21.13 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 031572 92 LQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 92 Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
++++|+.|+++|..+++++..
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ 50 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQA 50 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555543
No 52
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=31.09 E-value=81 Score=25.29 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHHHHhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 61 HQREDAVNSLAYEAEARLKDP--VYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 61 ~~R~~a~~SL~YEA~aR~rDP--VyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.||..+.+-==|-+.+|++-= -..-=--=..|++||++|..|+..++-|+-.|.
T Consensus 53 KQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 53 KQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777788888886520 000001113466667777777777766666553
No 53
>smart00150 SPEC Spectrin repeats.
Probab=31.02 E-value=1.5e+02 Score=19.26 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 79 KDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 79 rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.+++.+.+-.|..+.++.+.++.++...+..+....
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~ 58 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALN 58 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356678899999999999999999988887776553
No 54
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=30.98 E-value=1.3e+02 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccCCCCCCCCCCC--CCCCCCCCC
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNSG--FYFPSQWNN 143 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 143 (157)
.|..+..||++++.+|..+++++....+ .+.++++...+. -.++..|.+
T Consensus 20 q~~~~~~q~~q~~~Ql~~~k~q~~s~tG-------~r~~~~~~~~~~~~~~~p~~~~~ 70 (195)
T PF07996_consen 20 QLAQWKQQLEQLKQQLQQAKQQYNSLTG-------NRGLGNLLNNPDLRSYLPSDWQD 70 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-------T--GGGSSTTSS-------TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcHHHHhcChhHhhhCcccHHH
Confidence 4566777888888888888887776422 234455443333 233367764
No 55
>PLN02742 Probable galacturonosyltransferase
Probab=30.00 E-value=1.3e+02 Score=28.95 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 61 ~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+.+-..|+.++++|..- -|.|.-++.+|+..|..+++|+..++.+=+
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~ 178 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQST 178 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888653 366999999999999999999998876643
No 56
>PRK00736 hypothetical protein; Provisional
Probab=29.55 E-value=1.9e+02 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+|..-|++|..|+.+|..+..+|.
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665555554
No 57
>PRK09039 hypothetical protein; Validated
Probab=29.47 E-value=74 Score=28.18 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.|..|++||+.|+.+|+.++++|.
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655555555555443
No 58
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.13 E-value=1.2e+02 Score=20.76 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|.+|...|..++.++..++.|-+
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 59
>smart00338 BRLZ basic region leucin zipper.
Probab=28.98 E-value=1.5e+02 Score=19.63 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+-|..|..+...|+.++..+..++..+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 60
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=28.55 E-value=1e+02 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADL 110 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L 110 (157)
++.|..||.+||++|..+....
T Consensus 4 ~s~I~~eIekLqe~lk~~e~ke 25 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKE 25 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999988888776543
No 61
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=28.50 E-value=69 Score=23.19 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 80 DPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 80 DPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-||.|.+-+.-+++.+.++---.-+.++++|...
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L 40 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAEL 40 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3666666666666666554444456667776643
No 62
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.48 E-value=82 Score=27.51 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=37.4
Q ss_pred hHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 50 NVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 50 Nv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+++.+|+.....+..+ +++=+-|.+.+. --.++.|++|+..|++.|..++.+|...
T Consensus 52 ~~i~~le~~~~~~l~~-ak~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQ-AKAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHccChHHHHH-HHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666554444433 444444544443 4568899999999999999999988643
No 63
>PRK10963 hypothetical protein; Provisional
Probab=28.47 E-value=1.7e+02 Score=24.16 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=36.6
Q ss_pred chHHHHHHhcCC--cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 49 SNVSKLLNEVLP--HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 49 sNv~k~L~~l~~--~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
..|...|++=|. .++++.+. .-++-.|..| .|+-.++|++.|.+++...+.+|..
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~------~L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~~ 62 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVE------QMRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMTL 62 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHH------hccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777664 56777775 4466777555 6677777777777777776666653
No 64
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.44 E-value=1.5e+02 Score=20.13 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|.+...+.++......|+..+.+|..|.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888888888774
No 65
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.99 E-value=1.5e+02 Score=20.66 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 84 GCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 84 Gc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|.+.-+......+.+|+.|++..+.+|..+.
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666777888888888888776543
No 66
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=27.68 E-value=1.2e+02 Score=24.78 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=21.7
Q ss_pred chHHHHHHhcCC--cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 49 SNVSKLLNEVLP--HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 49 sNv~k~L~~l~~--~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
..|...|++=|. .+.++++..| ++..|. -|.|+-.++|++.|.++....+.+|...
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l------~~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~L 66 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAEL------RLPHPS---GGAVSLVERQLERLRERNRQLEEQLEEL 66 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHc------CCCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555655553 5566776554 344553 3688888999999988888888877644
No 67
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.18 E-value=1.4e+02 Score=25.68 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHhhccchHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 42 VHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 42 vhkvFG~sNv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.||+||+.+- ..|+..-.++..++= .|. ..+..+|.+|.+||...+.+|.+.
T Consensus 1 MnRiFG~~k~-----k~p~psL~dai~~v~----~r~-----------dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 1 MNRIFGRGKP-----KEPPPSLQDAIDSVN----KRS-----------DSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred CcccccCCCC-----CCCChhHHHHHHHHH----Hhh-----------hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3789998762 344444455555542 221 124455555566666555555544
No 68
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.96 E-value=1.9e+02 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=29.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 79 KDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 79 rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+-|+.|.-.-|..|.++.+.+..+++...++++..
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999888888888888877633
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.78 E-value=1.1e+02 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
.|.|+-|++|+...|+|++.=-.+|..
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~ 35 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVS 35 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 588999999999999888765555543
No 70
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=26.47 E-value=2.3e+02 Score=22.64 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
-+|..|+.||++-+++++..+..+..
T Consensus 131 tLi~~me~Ql~~kr~~i~~i~~~~~~ 156 (162)
T PF05983_consen 131 TLIMMMEEQLEEKREEIEEIRKVCEK 156 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888877776653
No 71
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=26.47 E-value=1.1e+02 Score=23.35 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
+|.+..||.|...++++++.++++
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq 27 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQ 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877766543
No 72
>PRK11677 hypothetical protein; Provisional
Probab=26.33 E-value=84 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
....|+++|++.+.||+.-+++|.
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655
No 73
>PRK00295 hypothetical protein; Provisional
Probab=26.22 E-value=1.4e+02 Score=20.64 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+|...|++|..|+.+|..+..+|.
T Consensus 27 ~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 27 VLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666655555
No 74
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=26.16 E-value=72 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 83 YGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 83 yGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-||-.-| .||++|++|++||.+++.-+.+|
T Consensus 415 qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 415 QGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555443 68999999999999888755443
No 75
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.89 E-value=1.4e+02 Score=21.97 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..|+.+++.+++++..++..+..|
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666766666666666655
No 76
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.60 E-value=1.4e+02 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+|...|++|..|+.+|..+..+|.
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555
No 77
>PRK11677 hypothetical protein; Provisional
Probab=25.43 E-value=1.6e+02 Score=23.28 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 031572 94 RQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 94 ~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
++...|+.||+.++.+|..|..
T Consensus 29 ~~q~~le~eLe~~k~ele~Ykq 50 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQ 50 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888854
No 78
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.35 E-value=1.4e+02 Score=29.19 Aligned_cols=62 Identities=24% Similarity=0.443 Sum_probs=49.9
Q ss_pred hhccchHHHHHHhcC-------------C--cchHHHHHHHHHHHHhhc------cCCCCchhHHHHHHHHHHHHHHHHH
Q 031572 45 IFGASNVSKLLNEVL-------------P--HQREDAVNSLAYEAEARL------KDPVYGCVGAISVLQRQVMRLQREL 103 (157)
Q Consensus 45 vFG~sNv~k~L~~l~-------------~--~~R~~a~~SL~YEA~aR~------rDPVyGc~G~I~~Lq~qi~~lq~EL 103 (157)
-|.-|.++++|+.-. | .+-++..++|.|++.+.- +++|-.-.-++..+|+++..++.||
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 356678888887532 2 257899999999999974 7888888889999999999999999
Q ss_pred HHH
Q 031572 104 DAT 106 (157)
Q Consensus 104 ~~~ 106 (157)
...
T Consensus 362 ~~~ 364 (675)
T KOG0242|consen 362 ERL 364 (675)
T ss_pred Hhh
Confidence 873
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.33 E-value=1e+02 Score=24.03 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-|..|+..+..|+.+|+.+..+|...
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777644
No 80
>PRK14623 hypothetical protein; Provisional
Probab=25.30 E-value=1.2e+02 Score=23.02 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+..+..|.+++|+++..++++|..
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~ 26 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDT 26 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999999999999983
No 81
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.81 E-value=2.6e+02 Score=29.95 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=43.6
Q ss_pred hccchHHHHHHh-------------cCC--cchHHHHHHHHHHHHhhcc--CCCCch--hHHHHHHHHHHHHHHHHHHHH
Q 031572 46 FGASNVSKLLNE-------------VLP--HQREDAVNSLAYEAEARLK--DPVYGC--VGAISVLQRQVMRLQRELDAT 106 (157)
Q Consensus 46 FG~sNv~k~L~~-------------l~~--~~R~~a~~SL~YEA~aR~r--DPVyGc--~G~I~~Lq~qi~~lq~EL~~~ 106 (157)
|.-|.++++|++ +.| ....++++||-|-..++.. .|+..- -+.|..|+..|.+|+.||..+
T Consensus 386 YRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rL 465 (1320)
T PLN03188 386 YRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRV 465 (1320)
T ss_pred CCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHH
Confidence 566677777754 334 3468999999999988752 232221 245566777888888888877
Q ss_pred HHHH
Q 031572 107 NADL 110 (157)
Q Consensus 107 ~~~L 110 (157)
++++
T Consensus 466 K~~~ 469 (1320)
T PLN03188 466 KANG 469 (1320)
T ss_pred HHhc
Confidence 7764
No 82
>PRK01203 prefoldin subunit alpha; Provisional
Probab=24.64 E-value=1.3e+02 Score=23.65 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
-+..|++|++.+++||..++..+.+|.
T Consensus 8 ~~~~~~~q~e~l~~ql~~L~~a~se~~ 34 (130)
T PRK01203 8 QLNYIESLISSVDSQIDSLNKTLSEVQ 34 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888877776663
No 83
>PRK14625 hypothetical protein; Provisional
Probab=24.54 E-value=1.2e+02 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+..+.+|.+++|+++..++++|..
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~ 27 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAE 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888999999999999983
No 84
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=24.46 E-value=82 Score=20.03 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCCCCchhhhHHHHhhccchHHHHHHhcCCc
Q 031572 31 FPPEEPQKFVNVHKIFGASNVSKLLNEVLPH 61 (157)
Q Consensus 31 FP~~~~~~F~~vhkvFG~sNv~k~L~~l~~~ 61 (157)
||+++.+--..+.+-=-...|+..|+.||..
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~ 36 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDR 36 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCcc
Confidence 6777666555555555566789999999854
No 85
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=24.35 E-value=45 Score=20.35 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=10.3
Q ss_pred CCChhhhhhhhCCCC
Q 031572 9 APCAACKCLRRKCMP 23 (157)
Q Consensus 9 ~~CAACK~lRRkC~~ 23 (157)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 378999999999975
No 86
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=24.07 E-value=1.5e+02 Score=19.96 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|..|+.++..++.++..++..|.
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666666666554
No 87
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.96 E-value=1.5e+02 Score=21.12 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
.|..|+.++..++.+++.+++++..
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888764
No 88
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.49 E-value=2.4e+02 Score=22.76 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=35.7
Q ss_pred chHHHHHHhcCCcchH------HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 49 SNVSKLLNEVLPHQRE------DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 49 sNv~k~L~~l~~~~R~------~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
+-|++.|+.++|..+= -++..-|-|.--=.+.-.-|--++|..|..|+.+..+||..-+.+
T Consensus 49 ~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 49 KLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred HHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466667777666541 233333333333344444566777777877777777777766543
No 89
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=23.48 E-value=1.5e+02 Score=18.00 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|..|.-.|..++++...++.....|.
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~aY~ 26 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFEAYA 26 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999999998888875
No 90
>PRK14626 hypothetical protein; Provisional
Probab=23.43 E-value=1.5e+02 Score=22.48 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
|=+..+-+|.+++|+++..++++|..
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~ 30 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKK 30 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888889999999999999983
No 91
>PRK04406 hypothetical protein; Provisional
Probab=23.25 E-value=1.6e+02 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+|...|++|..|+.+|..+..+|.
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 92
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=23.18 E-value=1.4e+02 Score=23.91 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYACNE 117 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~ 117 (157)
.|..||.||+.+++.|..+-..|.++..-+
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRD 33 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRD 33 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCC
Confidence 578899999999999999999998887655
No 93
>PRK02119 hypothetical protein; Provisional
Probab=23.12 E-value=1.7e+02 Score=20.55 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+|...+++|..|+.+|..+..+|.
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554
No 94
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.88 E-value=2.1e+02 Score=18.40 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+..|+.++..|+.+...+++++..
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655543
No 95
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.86 E-value=2e+02 Score=21.07 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.+..|+++++.+++++..++..+..|.
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELE 33 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777776666666553
No 96
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.75 E-value=1.3e+02 Score=20.68 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|...+++|..|+.+|..+..+|.
T Consensus 27 v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 27 VTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444
No 97
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.72 E-value=1.1e+02 Score=27.71 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADL 110 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L 110 (157)
|..|+++|.+++.||..++..|
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L 205 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDL 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655
No 98
>PRK14127 cell division protein GpsB; Provisional
Probab=22.53 E-value=2e+02 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
..+..|+.++..|+++|+..+.++..+
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 355566666666666666666666544
No 99
>PRK14622 hypothetical protein; Provisional
Probab=22.50 E-value=1.4e+02 Score=22.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+..|.+|.++.|+++..++++|..
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~ 26 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAE 26 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999999983
No 100
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.47 E-value=1.3e+02 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
|..|+++.++|++||..+++++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555777777777777777776643
No 101
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.33 E-value=1.1e+02 Score=27.98 Aligned_cols=57 Identities=28% Similarity=0.422 Sum_probs=37.8
Q ss_pred HHHHhcCCcchHHHHH---HHHHHHHhhc----------------cCCCCch---hHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 53 KLLNEVLPHQREDAVN---SLAYEAEARL----------------KDPVYGC---VGAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 53 k~L~~l~~~~R~~a~~---SL~YEA~aR~----------------rDPVyGc---~G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
++++.|...-|.|.|+ --|-+|+.|. -||--|. +|+|+.||.++-.+|++|+.+++.
T Consensus 167 ~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~ 245 (372)
T COG3524 167 KLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSV 245 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665543 3344444443 2555554 789999999999999999988764
No 102
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.17 E-value=1.8e+02 Score=20.91 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..|+++|+.+++++...+.++..|
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555555544
No 103
>PRK00587 hypothetical protein; Provisional
Probab=22.04 E-value=1.5e+02 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+..|.+|.+++|+++..++++|...
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~ 27 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEK 27 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888889999999999999843
No 104
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.02 E-value=2e+02 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=18.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 83 YGCVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 83 yGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+.--|-+...+.+|+.|+.||...+.+|.+
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666664
No 105
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=21.56 E-value=4.8e+02 Score=21.71 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=29.0
Q ss_pred HhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031572 75 EARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACN 116 (157)
Q Consensus 75 ~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~ 116 (157)
.++.-||-- --.+..++++|+.+.++|....++|......
T Consensus 52 ~a~~DdPyA--D~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~ 91 (217)
T PF08900_consen 52 DARQDDPYA--DWWLLRIEEKINEARQELQELIARLDALLAE 91 (217)
T ss_pred HHhcCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777754 4566788888888888888888887765443
No 106
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=21.52 E-value=2.2e+02 Score=20.50 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNADL 110 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L 110 (157)
.....|..+++.++++++.++++|
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~~ 99 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQEL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667778888888888887776653
No 107
>PRK03762 hypothetical protein; Provisional
Probab=21.50 E-value=1.6e+02 Score=22.21 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
...+..|.++.|+++..++++|.
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~ 29 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENA 29 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667778888999999999888
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.49 E-value=1.8e+02 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 90 SVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.++|.+++.++.+|+.-++||..+
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~H 60 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKH 60 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888887643
No 109
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.26 E-value=1.6e+02 Score=24.19 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+..|+.++..|++|+..+..++..|
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888877777776655
No 110
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.14 E-value=3.8e+02 Score=22.79 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHhhccchHHHHHHhcC---CcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 031572 43 HKIFGASNVSKLLNEVL---PHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQREL 103 (157)
Q Consensus 43 hkvFG~sNv~k~L~~l~---~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL 103 (157)
+..|+.--+--+|++|. +.-+.|++++|..=.. .||.-.+..++..-+..++.|+
T Consensus 202 ~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~------~y~~~~~~~~~~~iw~~lk~Ei 259 (262)
T PF14500_consen 202 TPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE------NYGADSLSPHWSTIWNALKFEI 259 (262)
T ss_pred cHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHH
Confidence 45666555556666664 5578899999987555 4888777777777777777665
No 111
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.09 E-value=1.3e+02 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 82 VYGCVGAISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 82 VyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
|-+-.-....|+.+|.++|.|+..+++.|.+|..
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444578999999999999999999999953
No 112
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=21.05 E-value=1.8e+02 Score=22.49 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+..++.++..++++|+.++++|+.
T Consensus 85 ~~~~~~~l~~l~a~Le~l~~~L~~ 108 (109)
T PF03955_consen 85 LTALEDKLTALLAQLEALKQQLAE 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355577777777777777777753
No 113
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.01 E-value=1.3e+02 Score=26.34 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=32.1
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 68 NSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 68 ~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
++.-+|-..|.+|+ =-.-.+..+|+++.+|++|+...++.|..|.
T Consensus 40 q~~k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 40 QTSKGESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred hhccCcchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666 3377788888888888888888888887776
No 114
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.95 E-value=1.5e+02 Score=22.53 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccCC
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGAR 125 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~~~~~~~~~ 125 (157)
+-+..|..|.++.|+++..++++|+ ..++....|+.
T Consensus 5 ~~~~~l~kqaqqmQ~~~~~~Q~ela---~~ev~g~aggG 40 (105)
T COG0718 5 MDMQKLMKQAQQMQKKMQKMQEELA---QKEVTGKAGGG 40 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---hcEEeeecCCc
Confidence 4467888999999999999999998 34444444443
No 115
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.92 E-value=2.3e+02 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031572 90 SVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~ 109 (157)
..|.+||..+.+++..++++
T Consensus 11 ~~le~~l~~l~~el~~LK~~ 30 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQ 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 116
>PRK14127 cell division protein GpsB; Provisional
Probab=20.85 E-value=1.4e+02 Score=22.88 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
.-+..|..++..|+.|+..++.+|..|..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999998854
No 117
>PRK00153 hypothetical protein; Validated
Probab=20.82 E-value=1.7e+02 Score=21.45 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+..+..|.+++|+++..++++|...
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~ 29 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQM 29 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677788889999999999998743
No 118
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.63 E-value=1.4e+02 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~ 108 (157)
|..|+.++..+...+...+.
T Consensus 15 i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 15 VESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444443
No 119
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.60 E-value=1.8e+02 Score=21.48 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|..|+.++.+|+.|++.++..+.-+
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666655555433
No 120
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=20.51 E-value=47 Score=32.79 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=22.0
Q ss_pred CCCccccCCCCCCc--hhhhHHHHhhccchH
Q 031572 23 PDCVFAPYFPPEEP--QKFVNVHKIFGASNV 51 (157)
Q Consensus 23 ~~CilAPYFP~~~~--~~F~~vhkvFG~sNv 51 (157)
++=-+.||||-++- --|..++++||..=+
T Consensus 353 de~elrpYF~l~~Vl~GlF~~~~rLfGI~~~ 383 (683)
T COG0339 353 DEEELRPYFPLNKVLEGLFEVAKRLFGITFV 383 (683)
T ss_pred CHHHhhhcCChhHHHHHHHHHHHHHcCeEEE
Confidence 34568899998774 669999999996533
No 121
>PRK14624 hypothetical protein; Provisional
Probab=20.35 E-value=1.7e+02 Score=22.54 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
-+..+.+|.++.|+++..++++|+.
T Consensus 7 nm~~~mkqAq~mQ~km~~~QeeL~~ 31 (115)
T PRK14624 7 NMSEALSNMGNIREKMEEVKKRIAS 31 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888889999999999999983
No 122
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=20.18 E-value=2.4e+02 Score=18.80 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 84 GCVGAISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 84 Gc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
|+-+.+..+...++.++.+|+....++.....
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~ 32 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLG 32 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55567888999999999999998888886543
No 123
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.16 E-value=3.3e+02 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.-|..|+.++..+..|...++.+|.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555555554
Done!