Query 031572
Match_columns 157
No_of_seqs 136 out of 317
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 01:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 86.2 1 3.5E-05 26.8 3.8 27 87-113 2-28 (33)
2 2er8_A Regulatory protein Leu3 79.0 3.7 0.00013 26.4 4.8 21 87-107 49-69 (72)
3 1zme_C Proline utilization tra 63.6 6.8 0.00023 24.8 3.3 26 86-111 43-68 (70)
4 3r4h_A Coiled coil helix CC-TE 61.8 12 0.00041 22.3 3.8 28 87-114 2-29 (34)
5 2zvf_A Alanyl-tRNA synthetase; 60.8 31 0.0011 25.4 6.9 47 68-114 13-59 (171)
6 3ra3_B P2F; coiled coil domain 57.8 13 0.00043 21.3 3.3 25 89-113 2-26 (28)
7 2yy0_A C-MYC-binding protein; 57.2 11 0.00038 24.2 3.4 24 89-112 28-51 (53)
8 1am9_A Srebp-1A, protein (ster 56.7 17 0.00058 24.8 4.5 27 86-112 49-75 (82)
9 1hlo_A Protein (transcription 51.7 16 0.00054 24.6 3.6 24 86-109 56-79 (80)
10 1nkp_B MAX protein, MYC proto- 51.3 26 0.00089 23.5 4.7 28 86-113 46-73 (83)
11 1r8i_A TRAC; VIRB5, helical bu 48.8 40 0.0014 26.4 6.1 49 88-143 16-68 (213)
12 4e61_A Protein BIM1; EB1-like 47.4 30 0.001 25.5 4.8 28 84-111 1-28 (106)
13 3nmd_A CGMP dependent protein 44.4 35 0.0012 23.5 4.5 28 87-114 40-67 (72)
14 3pbf_A Pulmonary surfactant-as 41.1 21 0.00071 25.0 3.0 24 88-111 3-26 (148)
15 1ic2_A Tropomyosin alpha chain 40.1 35 0.0012 23.0 4.0 48 62-113 20-67 (81)
16 1uuj_A Platelet-activating fac 39.8 13 0.00043 26.6 1.6 24 88-111 59-82 (88)
17 3trt_A Vimentin; cytoskeleton, 39.4 28 0.00095 22.9 3.3 21 87-107 56-76 (77)
18 2xdj_A Uncharacterized protein 38.9 40 0.0014 23.5 4.1 24 88-111 21-44 (83)
19 1rtm_1 Mannose-binding protein 38.7 33 0.0011 24.2 3.8 22 88-109 5-26 (149)
20 3u1c_A Tropomyosin alpha-1 cha 38.4 37 0.0012 24.0 4.0 29 85-113 42-70 (101)
21 1gk6_A Vimentin; intermediate 38.0 43 0.0015 21.6 4.0 22 91-112 4-25 (59)
22 1x8y_A Lamin A/C; structural p 36.6 49 0.0017 22.7 4.3 26 88-113 29-54 (86)
23 1z0k_B FYVE-finger-containing 36.0 81 0.0028 21.5 5.2 41 61-107 26-66 (69)
24 3twe_A Alpha4H; unknown functi 35.9 48 0.0017 18.7 3.4 22 90-111 4-25 (27)
25 1zxa_A CGMP-dependent protein 35.6 53 0.0018 22.3 4.2 27 88-114 26-52 (67)
26 1yzm_A FYVE-finger-containing 35.4 89 0.0031 20.1 6.0 40 62-107 9-48 (51)
27 1gk4_A Vimentin; intermediate 35.4 53 0.0018 22.3 4.3 40 67-113 13-52 (84)
28 1buu_A Protein (mannose-bindin 34.3 30 0.001 25.2 3.1 23 86-108 22-44 (168)
29 3myf_A Sensor protein; HPT, hi 34.0 1.2E+02 0.0042 21.3 7.3 62 39-108 53-114 (119)
30 2xv5_A Lamin-A/C; structural p 32.3 66 0.0022 21.9 4.3 22 90-111 8-29 (74)
31 2l5g_B Putative uncharacterize 32.0 69 0.0024 20.1 4.0 23 92-114 7-29 (42)
32 1dh3_A Transcription factor CR 31.9 77 0.0026 20.1 4.4 27 87-113 22-48 (55)
33 3viq_B Mating-type switching p 31.7 30 0.001 24.6 2.5 22 88-109 9-30 (85)
34 1jcd_A Major outer membrane li 31.4 66 0.0023 20.7 4.0 17 91-107 15-31 (52)
35 2k48_A Nucleoprotein; viral pr 31.0 65 0.0022 23.9 4.3 26 86-111 34-59 (107)
36 2dgc_A Protein (GCN4); basic d 30.9 85 0.0029 20.5 4.5 27 87-113 30-56 (63)
37 3v1a_A Computational design, M 30.7 84 0.0029 20.0 4.3 39 61-105 7-45 (48)
38 1jcd_A Major outer membrane li 30.6 74 0.0025 20.5 4.1 23 89-111 20-42 (52)
39 2pbi_A Regulator of G-protein 30.3 37 0.0013 29.8 3.4 78 37-114 144-253 (424)
40 3azd_A Short alpha-tropomyosin 30.1 12 0.00041 22.5 0.2 25 88-112 5-29 (37)
41 2wg5_A General control protein 30.0 60 0.0021 23.1 4.0 28 89-116 9-36 (109)
42 3iqt_A Signal transduction his 30.0 1.2E+02 0.0042 21.6 5.7 37 71-114 86-122 (123)
43 3i00_A HIP-I, huntingtin-inter 29.6 55 0.0019 24.2 3.8 21 87-107 40-60 (120)
44 2qdq_A Talin-1; dimerisation d 29.5 1.2E+02 0.004 19.6 4.9 25 92-116 13-37 (50)
45 2wt7_B Transcription factor MA 29.2 71 0.0024 22.7 4.2 52 62-113 28-81 (90)
46 1rtm_1 Mannose-binding protein 28.6 65 0.0022 22.6 4.0 24 92-115 2-25 (149)
47 2z5i_A TM, general control pro 27.9 93 0.0032 19.7 4.2 24 88-111 13-36 (52)
48 3tnu_B Keratin, type II cytosk 26.9 81 0.0028 22.8 4.3 42 65-113 60-101 (129)
49 3i00_A HIP-I, huntingtin-inter 26.7 88 0.003 23.1 4.5 20 94-113 40-59 (120)
50 2ic6_A Nucleocapsid protein; h 26.7 80 0.0027 22.1 4.0 26 86-111 4-29 (78)
51 3kqg_A Langerin, C-type lectin 26.4 96 0.0033 22.3 4.7 24 87-110 16-39 (182)
52 3sja_C Golgi to ER traffic pro 26.0 75 0.0025 21.5 3.6 27 86-112 31-57 (65)
53 3mov_A Lamin-B1; LMNB1, B-type 26.0 91 0.0031 22.0 4.3 40 66-112 23-62 (95)
54 1t2k_D Cyclic-AMP-dependent tr 25.6 80 0.0027 20.0 3.6 17 93-109 35-51 (61)
55 3tnu_A Keratin, type I cytoske 25.6 88 0.003 22.7 4.3 42 65-113 62-103 (131)
56 1buu_A Protein (mannose-bindin 25.5 76 0.0026 22.9 4.0 30 85-114 14-43 (168)
57 2ic9_A Nucleocapsid protein; h 25.4 82 0.0028 22.8 4.0 25 87-111 5-29 (96)
58 2p9x_A Hypothetical protein PH 25.3 29 0.00099 25.4 1.5 14 34-47 44-58 (99)
59 3sjb_C Golgi to ER traffic pro 25.1 73 0.0025 22.9 3.6 27 86-112 48-74 (93)
60 1ef1_C Moesin; membrane, FERM 24.9 25 0.00084 25.2 1.1 16 91-106 30-45 (90)
61 1z0j_B FYVE-finger-containing 24.7 1.6E+02 0.0054 19.6 5.5 41 61-107 15-55 (59)
62 3uun_A Dystrophin; triple heli 24.7 1.5E+02 0.0052 19.4 5.7 36 78-113 27-62 (119)
63 3rrk_A V-type ATPase 116 kDa s 24.2 88 0.003 25.5 4.5 27 87-113 226-252 (357)
64 3mud_A DNA repair protein XRCC 23.9 85 0.0029 24.9 4.1 41 60-111 119-159 (175)
65 4fi5_A Nucleoprotein; structur 23.2 92 0.0032 23.2 4.0 24 88-111 23-46 (113)
66 3uul_A Utrophin; spectrin repe 22.8 1.7E+02 0.0057 19.2 6.1 43 71-113 18-62 (118)
67 1hjb_A Ccaat/enhancer binding 22.8 1.2E+02 0.004 21.3 4.3 27 88-114 44-70 (87)
68 3u59_A Tropomyosin beta chain; 22.7 1E+02 0.0034 21.5 4.0 27 86-112 43-69 (101)
69 2wuj_A Septum site-determining 22.4 65 0.0022 20.5 2.7 22 88-109 35-56 (57)
70 1nlw_A MAD protein, MAX dimeri 22.3 1.6E+02 0.0054 19.9 4.8 26 86-111 46-71 (80)
71 1ybx_A Conserved hypothetical 21.8 74 0.0025 24.3 3.3 27 87-113 41-67 (143)
72 3bbp_D GRIP and coiled-coil do 21.5 1.3E+02 0.0046 20.7 4.2 55 41-106 7-62 (71)
73 2y9y_A Imitation switch protei 21.5 3.8E+02 0.013 23.4 8.2 79 36-116 131-213 (374)
74 2ic6_A Nucleocapsid protein; h 21.1 1.2E+02 0.004 21.2 4.0 23 86-108 51-73 (78)
75 3mq9_A Bone marrow stromal ant 21.1 2.5E+02 0.0084 23.5 6.8 38 65-111 384-421 (471)
76 2k48_A Nucleoprotein; viral pr 21.1 1.1E+02 0.0038 22.6 4.0 22 87-108 82-103 (107)
77 2yny_A General control protein 20.6 1.4E+02 0.005 21.8 4.5 30 85-114 74-103 (106)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.24 E-value=1 Score=26.83 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|.|..|+++|..|+.|+++++-+++..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999988865
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=78.97 E-value=3.7 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
+.|..|+.+|+.|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777776544
No 3
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.62 E-value=6.8 Score=24.82 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
-+.|..|+.+|..|+.+|..+++.|.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999998887654
No 4
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=61.82 E-value=12 Score=22.29 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|.+..+++++...+.||++.+-+|+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888999999988888663
No 5
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=60.82 E-value=31 Score=25.40 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 68 NSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 68 ~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
..++-+......-|..--.-.|..|+.++..++.||+.++.+++.+.
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555545456778888899999999999999998888764
No 6
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.76 E-value=13 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|..|++...+|++|++++.-+++..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888899999999888877743
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.20 E-value=11 Score=24.24 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 89 ISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
...|+.++..|+++++.++++|..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555555543
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=56.66 E-value=17 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+-.|..|+.++..|+.|+..++.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999888764
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.69 E-value=16 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
+-.|..|+.+++.|+.+++.++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667888999988888888876653
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.33 E-value=26 Score=23.52 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+-.|..|+.+++.++.|++..+.+....
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999988888888888777766543
No 11
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=48.78 E-value=40 Score=26.38 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccCCCCCCCCCC--CC--CCCCCCCC
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNS--GF--YFPSQWNN 143 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~ 143 (157)
.|..+..||+.++.+|..++.++..+.. .+.++++...+ .+ ..|-.|.+
T Consensus 16 q~~q~~~Ql~~~k~Ql~q~k~qy~sltG-------~r~~~~~l~~~~~~l~~~lp~~~~~ 68 (213)
T 1r8i_A 16 QLEQMAQQLEQLKSQLETQKNMYESMAK-------TTNLGDLLGTSTNTLANNLPDNWKE 68 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCGGGSSSTTTSSCCCCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------cccHHHHhcChHHHHHhhccccHHH
Confidence 3456777888888888888888776533 33456665555 22 44577874
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=47.35 E-value=30 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 84 GCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 84 Gc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|..|.+..|+.++.+.+.++...++++.
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~ 28 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIE 28 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777766666666666554
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.39 E-value=35 Score=23.54 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
..|..|+.+|.....++...+.+|-.|.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4588888888888888888888888774
No 14
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=41.10 E-value=21 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
++..|+++++.|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998888874
No 15
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=40.10 E-value=35 Score=23.01 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 62 QREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 62 ~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.|.+....-+=+++.|. --.-.-|..|+..|..++.+|+.+...|...
T Consensus 20 ~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544 1233567888888888888888888777643
No 16
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=39.78 E-value=13 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.|-.||.+|.+|+.++..++++|.
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999988886
No 17
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=39.36 E-value=28 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
-.|..|.++|+.|+.||..++
T Consensus 56 ~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 56 QESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 346677777777777776654
No 18
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=38.94 E-value=40 Score=23.47 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.+..|++||..++.|++.++-++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456777888888888777766554
No 19
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=38.69 E-value=33 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
.|..|+.+++.||.+|...+..
T Consensus 5 ~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 5 KLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3566667777777776666654
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=38.42 E-value=37 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.=.-|..|+.+|..++.+|+.++..|...
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999988888877643
No 21
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=38.00 E-value=43 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031572 91 VLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 91 ~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
.+|..|..++.+|..+++++++
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 22
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.56 E-value=49 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..++.+|..++.+|..+++++.+.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666544
No 23
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=35.98 E-value=81 Score=21.53 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031572 61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 61 ~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
.+....+++.|.+|.. -|=+-.|-.|+.-|.+|+.|+...+
T Consensus 26 ~EQ~~~I~~yI~qAk~------~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 26 LQQIHNITSFIRQAKA------AGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999998 5558888999999999998887554
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=35.94 E-value=48 Score=18.73 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 90 SVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
..|..+++.||+.|..++..|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888777664
No 25
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.55 E-value=53 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.|..|+..++.-..|+..++.+|-+|.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888874
No 26
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=35.41 E-value=89 Score=20.14 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031572 62 QREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 62 ~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
+....+++.|.+|.. -|=+-.|-.|+.-|.+|+.|+...+
T Consensus 9 EQ~~~I~~~I~qAk~------~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 9 QQIHNITSFIRQAKA------AGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999998 5568888999999999999888654
No 27
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.40 E-value=53 Score=22.34 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 67 VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 67 ~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
...-+-|++.|... .+..++..|..++.+|..+++++++.
T Consensus 13 LE~~l~e~e~~~~~-------~~~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 13 LERQMREMEENFAV-------EAANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566665433 34556666666666666666665543
No 28
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=34.30 E-value=30 Score=25.17 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~ 108 (157)
-..|..|+.+|..|+.+|..++.
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666777777777766655
No 29
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=33.99 E-value=1.2e+02 Score=21.33 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=33.1
Q ss_pred hhHHHHhhccchHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 031572 39 FVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 39 F~~vhkvFG~sNv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~ 108 (157)
...+||+-|.+..+..- ..+ .-+...|...|..+|+-..-..+..|..+|..+..++....+
T Consensus 53 ~~~aHkLkGaa~~~Ga~-----~L~---~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~ 114 (119)
T 3myf_A 53 LSTIHKLHGASCYCGVP-----TTQ---RLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLS 114 (119)
T ss_dssp HHHHHHHHHHHTTTTCH-----HHH---HHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHH-----HHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578877765533221 001 112234667777777766556666666665555555544433
No 30
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.31 E-value=66 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 90 SVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 90 ~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
..++.+|..++.+|..++++++
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~ 29 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQ 29 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444
No 31
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.03 E-value=69 Score=20.08 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 031572 92 LQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 92 Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
|-++|.++-.|++.+.++|..+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777664
No 32
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.87 E-value=77 Score=20.12 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-.|..|+.++..|+.|...++.+|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888887777654
No 33
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.66 E-value=30 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
.|..|+.++.+|++++..+.++
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665543
No 34
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.35 E-value=66 Score=20.69 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031572 91 VLQRQVMRLQRELDATN 107 (157)
Q Consensus 91 ~Lq~qi~~lq~EL~~~~ 107 (157)
.|..+|.+|+.++..++
T Consensus 15 ~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 15 TANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 35
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.95 E-value=65 Score=23.85 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.+-|..||..|...+.||..++..|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999886
No 36
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.91 E-value=85 Score=20.47 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
..+..|+.++..|+.+...+.+++..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888877777655
No 37
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=30.72 E-value=84 Score=20.05 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031572 61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDA 105 (157)
Q Consensus 61 ~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~ 105 (157)
.+....++++|-+|.. .|=+-.|..|+.-|++|+.|+..
T Consensus 7 ~EQ~~~I~~~I~qAk~------~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 7 AQQIKNIHSFIHQAKA------AGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------hcChHHHHHHHHHHHHHHHHHHh
Confidence 3456778889999888 56688899999999999988863
No 38
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.57 E-value=74 Score=20.47 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
|..|+.++..++.++..++.|-+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~ 42 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAA 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554443
No 39
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=30.27 E-value=37 Score=29.83 Aligned_cols=78 Identities=9% Similarity=0.191 Sum_probs=52.2
Q ss_pred hhhhHHHHhhccchHHHHHHh---cCCcchHHHHHHHHHHHH----hhccCCCCchhHH------------------HHH
Q 031572 37 QKFVNVHKIFGASNVSKLLNE---VLPHQREDAVNSLAYEAE----ARLKDPVYGCVGA------------------ISV 91 (157)
Q Consensus 37 ~~F~~vhkvFG~sNv~k~L~~---l~~~~R~~a~~SL~YEA~----aR~rDPVyGc~G~------------------I~~ 91 (157)
+.++.+||.|...+-.=+++. +.++.+.+-..-+|.+.+ +++.-|+.||+-. +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 456667887776665555554 334455556666676655 7889999998743 467
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhh
Q 031572 92 LQRQVMRLQRELDA-------TNADLIRYA 114 (157)
Q Consensus 92 Lq~qi~~lq~EL~~-------~~~~L~~~~ 114 (157)
++.+|++|+.||.. +-++|..|.
T Consensus 224 ~r~~veqLk~~l~~~rikvS~~~e~l~~y~ 253 (424)
T 2pbi_A 224 VRKEIMYYQQALMRSTVKSSVSLGGIVKYS 253 (424)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccceeHHHHHHHHHHHH
Confidence 88899999988843 335566663
No 40
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=30.11 E-value=12 Score=22.51 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
.|..|+..|+.++.+++.++.++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777788888888777777664
No 41
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.00 E-value=60 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 031572 89 ISVLQRQVMRLQRELDATNADLIRYACN 116 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~~~~~~L~~~~~~ 116 (157)
..+|+.+++.++.|+...+.+|.....+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999877543
No 42
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=29.96 E-value=1.2e+02 Score=21.61 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 71 AYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 71 ~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
..|...|..+|+. .+...+..|..|++.+..++..|+
T Consensus 86 ~LE~~~r~g~~~~-------~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 86 LIEQQLRSGTKEE-------DLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHHTTCCGG-------GGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4477778888754 555666677777777777776654
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.64 E-value=55 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
-+|..|+.+|..|+.||+..+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999865
No 44
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=29.51 E-value=1.2e+02 Score=19.65 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 031572 92 LQRQVMRLQRELDATNADLIRYACN 116 (157)
Q Consensus 92 Lq~qi~~lq~EL~~~~~~L~~~~~~ 116 (157)
-|..|-..+.||..++..|+.+...
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999877643
No 45
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.23 E-value=71 Score=22.70 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHhhccC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 62 QREDAVNSLAYEAEARLKD--PVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 62 ~R~~a~~SL~YEA~aR~rD--PVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+|....+-=.|-+++|.+= -+..--..+..|+.+++.|..|+..+..++-.|
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888652 222223334444444555555555444444433
No 46
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=28.59 E-value=65 Score=22.58 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 92 LQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 92 Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
|+++|..|+.+|..++.+|..+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999987754
No 47
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.87 E-value=93 Score=19.71 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.|.+|+..|.+|+.+|...+.+-.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 578899999999999987776544
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.91 E-value=81 Score=22.79 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 65 DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 65 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.....-+-|++.|-. ..+..++..|..++.+|..+++++++.
T Consensus 60 ~~LE~~l~e~e~~~~-------~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 60 ANLQNAIADAEQRGE-------LALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344445556666532 345666666777777777776666544
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.70 E-value=88 Score=23.07 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031572 94 RQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 94 ~qi~~lq~EL~~~~~~L~~~ 113 (157)
.-|.+|+..+..+.++|...
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555543
No 50
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.66 E-value=80 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.+-|-.||..|...+.+|..++..|.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLk 29 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK 29 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999886
No 51
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.44 E-value=96 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNADL 110 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L 110 (157)
..+..|+.+|+.||.+|...++.|
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555544
No 52
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.05 E-value=75 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+.--.+|++++..+..||+..+.+|..
T Consensus 31 FAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 31 YAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344568999999999999999988873
No 53
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.03 E-value=91 Score=21.95 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 66 AVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 66 a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
....-+-|.+.|... .+..+|..|..++.+|..+++++++
T Consensus 23 ~LE~~l~e~E~~~~~-------e~~~~q~~i~~lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 23 ACLERIQELEDLLAK-------EKDNSRRMLTDKEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554332 3444555555555555555555443
No 54
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.59 E-value=80 Score=20.05 Aligned_cols=17 Identities=18% Similarity=0.126 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031572 93 QRQVMRLQRELDATNAD 109 (157)
Q Consensus 93 q~qi~~lq~EL~~~~~~ 109 (157)
..+...|+.++...+.+
T Consensus 35 ~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.57 E-value=88 Score=22.70 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 65 DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 65 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.....-+-|++.|- -..+..++..|..++.+|..+++++++.
T Consensus 62 ~sLE~~l~e~e~~~-------~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 62 ASLENSLEETKGRY-------CMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666653 2345566666677777777776666544
No 56
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.54 E-value=76 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
-.|.-..+..+|+.|+.+|..++.+|..+.
T Consensus 14 ~~g~~~~~~~~l~~L~~~~~~L~~~l~~l~ 43 (168)
T 1buu_A 14 DRGDSRAIEVKLANMEAEINTLKSKLELTN 43 (168)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345557888899999999999999998753
No 57
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.38 E-value=82 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+-|..||..|...+.+|..++..|.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998886
No 58
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=25.26 E-value=29 Score=25.39 Aligned_cols=14 Identities=57% Similarity=1.139 Sum_probs=12.5
Q ss_pred CCchhhhH-HHHhhc
Q 031572 34 EEPQKFVN-VHKIFG 47 (157)
Q Consensus 34 ~~~~~F~~-vhkvFG 47 (157)
++|++|.. |.++||
T Consensus 44 eDP~kFkeaV~~LFG 58 (99)
T 2p9x_A 44 DDPQKFKEAVSKLFG 58 (99)
T ss_dssp HCHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHH
Confidence 68999986 899999
No 59
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.07 E-value=73 Score=22.93 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+.---+|++++..+.+||+..+.+|..
T Consensus 48 FAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 48 YAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999988888864
No 60
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=24.86 E-value=25 Score=25.15 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 031572 91 VLQRQVMRLQRELDAT 106 (157)
Q Consensus 91 ~Lq~qi~~lq~EL~~~ 106 (157)
+||.||..|+.||+.+
T Consensus 30 ~lq~QL~~Lk~ELe~l 45 (90)
T 1ef1_C 30 RVQKHLKALTSELANA 45 (90)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 61
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=24.70 E-value=1.6e+02 Score=19.56 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031572 61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATN 107 (157)
Q Consensus 61 ~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~ 107 (157)
.+....+++.+.+|.. -|=+-.|-.|+.-|..|+.++...+
T Consensus 15 ~EQi~~I~~yI~qAk~------~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQ------CGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHH------SSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 4566889999999988 5668888899999999988887543
No 62
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=24.69 E-value=1.5e+02 Score=19.36 Aligned_cols=36 Identities=8% Similarity=-0.029 Sum_probs=30.3
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 78 LKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 78 ~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
..+||.+-.-.|..+..+...++.+|..-+..+...
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~ 62 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNI 62 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 357999999999999999999999999888777644
No 63
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.16 E-value=88 Score=25.53 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
-.|..|+.+|+.++.+|..++++|..+
T Consensus 226 ~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 226 KAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888777777654
No 64
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.94 E-value=85 Score=24.89 Aligned_cols=41 Identities=5% Similarity=0.164 Sum_probs=32.5
Q ss_pred CcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 60 PHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 60 ~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.+.|.++++-|+=.| ...|..||.+++.|+.+|...+.+-.
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k 159 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENL 159 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888665 45788999999999999988776644
No 65
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.18 E-value=92 Score=23.21 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
-|..||..|...+.+|..++..|.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLk 46 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVR 46 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999886
No 66
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.83 E-value=1.7e+02 Score=19.23 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=33.4
Q ss_pred HHHHHhh--ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 71 AYEAEAR--LKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 71 ~YEA~aR--~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
+-|++.. ..+||.+-.-.|..+..+...++.+|..-+..+...
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v 62 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSV 62 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 458999999999999999999999999888777644
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.79 E-value=1.2e+02 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
-+..|..+...|+.++..++.++..+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665443
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.71 E-value=1e+02 Score=21.50 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
=.-|..|+.++..++.+|+.+...|..
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888877776653
No 69
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.41 E-value=65 Score=20.55 Aligned_cols=22 Identities=9% Similarity=0.270 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 88 AISVLQRQVMRLQRELDATNAD 109 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~ 109 (157)
.+..|..++..|+.+|..++.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666655544
No 70
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.27 E-value=1.6e+02 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+-.|..|+.+...++.|++..+.+..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888777766554
No 71
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=21.84 E-value=74 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 87 GAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
|-+..+..|.++.|+++..++++|+..
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~ 67 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEK 67 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357888999999999999999999843
No 72
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.54 E-value=1.3e+02 Score=20.66 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHhhccchHHHHHHhcC-CcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031572 41 NVHKIFGASNVSKLLNEVL-PHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDAT 106 (157)
Q Consensus 41 ~vhkvFG~sNv~k~L~~l~-~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~ 106 (157)
++|.+|--.+.-.+.+.|. ...+-+-+++|+.|+++= ...|..|+..|+.||...
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHH
Confidence 4455555555556666664 345678899999998872 233777777777777643
No 73
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=21.47 E-value=3.8e+02 Score=23.39 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=55.1
Q ss_pred chhhhHHHHhhccchHHHHHHhcC-CcchHHHHHHHHHHHHhhccCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 36 PQKFVNVHKIFGASNVSKLLNEVL-PHQREDAVNSLAYEAEARLKDPVYG---CVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 36 ~~~F~~vhkvFG~sNv~k~L~~l~-~~~R~~a~~SL~YEA~aR~rDPVyG---c~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
-+.|..+...||+.++-++-.++. -..-+++- -++.+=...-+=|.| -++.|-.-+.+|+.++.+..+++..+.
T Consensus 131 F~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~--~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~Ki~ 208 (374)
T 2y9y_A 131 FRKFITVSGKYGRNSIQAIARELAPGKTLEEVR--AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKLS 208 (374)
T ss_dssp HHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH--HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH--HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999999999996 33333222 222222222233444 588889999999999999999999999
Q ss_pred hhhhc
Q 031572 112 RYACN 116 (157)
Q Consensus 112 ~~~~~ 116 (157)
.|..+
T Consensus 209 ~y~~P 213 (374)
T 2y9y_A 209 EYKNP 213 (374)
T ss_dssp TCSSH
T ss_pred HccCC
Confidence 88654
No 74
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.15 E-value=1.2e+02 Score=21.20 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~ 108 (157)
-+.|+.|+..|.+|+.+|+.+.+
T Consensus 51 ~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 51 RAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777765544
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.10 E-value=2.5e+02 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 65 DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 65 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
.+++.+.-|+++| -+-..||+||.++|+-+..++++-.
T Consensus 384 ~~l~~~~~~~e~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 384 AARDGLRAVMEAR---------NVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhh---------hHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 4455566666664 5667788888888888877776654
No 76
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.05 E-value=1.1e+02 Score=22.60 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031572 87 GAISVLQRQVMRLQRELDATNA 108 (157)
Q Consensus 87 G~I~~Lq~qi~~lq~EL~~~~~ 108 (157)
++|+.||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777765544
No 77
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=20.58 E-value=1.4e+02 Score=21.83 Aligned_cols=30 Identities=3% Similarity=0.161 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
.-+.|..+..+|..+..++..++.+|+++.
T Consensus 74 ld~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 74 LNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999998764
Done!