Query 031572
Match_columns 157
No_of_seqs 136 out of 317
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 01:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031572.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031572hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 72.6 3.7 0.00027 26.6 5.4 50 65-114 15-64 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 65.5 4.9 0.00036 24.4 4.5 26 86-111 32-57 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 58.7 18 0.0013 22.8 6.7 27 86-112 51-77 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 44.6 18 0.0013 22.6 4.7 29 85-113 48-76 (80)
5 d1urfa_ a.2.6.1 (A:) Protein k 42.1 39 0.0029 21.8 6.4 21 45-65 24-44 (81)
6 d1r8ia_ a.8.7.1 (A:) Typo IV s 33.0 72 0.0052 22.1 7.2 28 88-115 9-36 (187)
7 d3coqa1 g.38.1.1 (A:8-48) Gal4 32.8 10 0.00074 21.2 1.7 15 9-23 2-16 (41)
8 d1pyia1 g.38.1.1 (A:30-71) PPR 32.5 12 0.00088 21.1 2.0 17 8-24 2-18 (42)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 29.4 38 0.0028 22.3 4.7 26 88-113 9-34 (133)
10 d1nkpb_ a.38.1.1 (B:) Max prot 29.0 44 0.0032 20.6 4.6 28 85-112 45-72 (83)
11 d2otaa1 a.284.1.1 (A:7-68) Hyp 28.1 19 0.0014 22.7 2.6 20 51-70 35-54 (62)
12 d1lrza1 a.2.7.4 (A:245-309) Me 26.4 40 0.0029 20.9 4.0 26 88-113 4-29 (65)
13 d1clda_ g.38.1.1 (A:) CD2-Lac9 26.3 14 0.001 19.9 1.4 16 9-24 1-16 (33)
14 d1rw6a_ a.47.4.1 (A:) CAPPD, a 25.5 46 0.0034 24.8 4.9 71 28-111 3-81 (192)
15 d1zmec1 g.38.1.1 (C:31-66) PUT 23.2 21 0.0015 19.7 1.8 15 9-23 2-16 (36)
16 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.0 51 0.0037 21.6 4.3 16 89-104 17-32 (133)
17 d1nlwa_ a.38.1.1 (A:) Mad prot 22.7 75 0.0054 19.2 4.8 27 86-112 46-72 (79)
18 d1quua1 a.7.1.1 (A:1-124) alph 22.1 87 0.0063 19.4 6.1 37 77-113 38-74 (124)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.57 E-value=3.7 Score=26.64 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031572 65 DAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114 (157)
Q Consensus 65 ~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~ 114 (157)
+-+.+=+-|+..-+.+|++|-.+.|..+..+.+.++.||...+..+..+.
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~ 64 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 64 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888999999999999999999999999999998887653
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.54 E-value=4.9 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLI 111 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~ 111 (157)
+-.|..||.|+..|++|+...+.++.
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998888765
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.73 E-value=18 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+-.|..|+.++..++.+++..+.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888887777766654
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.64 E-value=18 Score=22.60 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+-.|..|+.+++.|++|....+.++...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999888877654
No 5
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.07 E-value=39 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.4
Q ss_pred hhccchHHHHHHhcCCcchHH
Q 031572 45 IFGASNVSKLLNEVLPHQRED 65 (157)
Q Consensus 45 vFG~sNv~k~L~~l~~~~R~~ 65 (157)
.=|+.||+++++.-...+|..
T Consensus 24 keGaEnm~k~~~~~~~~DrK~ 44 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKL 44 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHccCCcccHHH
Confidence 458999999999876666643
No 6
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=32.97 E-value=72 Score=22.12 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRYAC 115 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~~~ 115 (157)
.|..+..||+.++.||..++.++..+.+
T Consensus 9 ql~q~~~ql~~~k~Ql~q~k~~~~s~tG 36 (187)
T d1r8ia_ 9 QLEQMAQQLEQLKSQLETQKNMYESMAK 36 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677888888889999888888886643
No 7
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.76 E-value=10 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=12.8
Q ss_pred CCChhhhhhhhCCCC
Q 031572 9 APCAACKCLRRKCMP 23 (157)
Q Consensus 9 ~~CAACK~lRRkC~~ 23 (157)
++|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 689999999999964
No 8
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.45 E-value=12 Score=21.12 Aligned_cols=17 Identities=24% Similarity=0.722 Sum_probs=13.9
Q ss_pred CCCChhhhhhhhCCCCC
Q 031572 8 NAPCAACKCLRRKCMPD 24 (157)
Q Consensus 8 ~~~CAACK~lRRkC~~~ 24 (157)
..+|..||..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 56899999999999753
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.45 E-value=38 Score=22.28 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.+..|+++++.+++++...+..+..|
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~ 34 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISEL 34 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.04 E-value=44 Score=20.64 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 85 CVGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 85 c~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
.+-.|..|+.++..++.++...+.+...
T Consensus 45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~ 72 (83)
T d1nkpb_ 45 ATEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888888888877766543
No 11
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=28.08 E-value=19 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHhcCCcchHHHHHHH
Q 031572 51 VSKLLNEVLPHQREDAVNSL 70 (157)
Q Consensus 51 v~k~L~~l~~~~R~~a~~SL 70 (157)
++++|..+|+.+|..++++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 45667789999999888764
No 12
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=26.38 E-value=40 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 88 AISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 88 ~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
.|..|+.+...|.++|+.+.+.|...
T Consensus 4 Yl~~L~~~~~~L~~~i~k~~~~lekn 29 (65)
T d1lrza1 4 YIKELNEERDILNKDLNKALKDIEKR 29 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 36778888888888888888888743
No 13
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=26.25 E-value=14 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.767 Sum_probs=13.4
Q ss_pred CCChhhhhhhhCCCCC
Q 031572 9 APCAACKCLRRKCMPD 24 (157)
Q Consensus 9 ~~CAACK~lRRkC~~~ 24 (157)
.+|..|+..+.||...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999753
No 14
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.49 E-value=46 Score=24.80 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=46.1
Q ss_pred ccCCCC----CCchhhhHHHH---hhccchHHHHHHhcCCcchHHHHHHHHHHHHhhccC-CCCchhHHHHHHHHHHHHH
Q 031572 28 APYFPP----EEPQKFVNVHK---IFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKD-PVYGCVGAISVLQRQVMRL 99 (157)
Q Consensus 28 APYFP~----~~~~~F~~vhk---vFG~sNv~k~L~~l~~~~R~~a~~SL~YEA~aR~rD-PVyGc~G~I~~Lq~qi~~l 99 (157)
-|||.. .+-++|..+.. -.-...|.++++++. ||+-|.+| |.---=+++...|.-|..|
T Consensus 3 D~Yf~~~~~~~Eh~~f~~Ak~rLee~hr~k~~~VmkeW~-------------eaE~~~~~l~k~d~K~~~~rFq~~v~~L 69 (192)
T d1rw6a_ 3 DKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWE-------------EAERQAKNLPKADKKAVIQHFQEKVESL 69 (192)
T ss_dssp HHHHHTTSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 378852 34578988744 344678888888886 33333333 2222246888888888888
Q ss_pred HHHHHHHHHHHH
Q 031572 100 QRELDATNADLI 111 (157)
Q Consensus 100 q~EL~~~~~~L~ 111 (157)
+.|-+.-+.+|.
T Consensus 70 E~e~~~erq~L~ 81 (192)
T d1rw6a_ 70 EQEAANERQQLV 81 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHhhHH
Confidence 888777777665
No 15
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.17 E-value=21 Score=19.66 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCChhhhhhhhCCCC
Q 031572 9 APCAACKCLRRKCMP 23 (157)
Q Consensus 9 ~~CAACK~lRRkC~~ 23 (157)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 478888888888864
No 16
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.96 E-value=51 Score=21.60 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 031572 89 ISVLQRQVMRLQRELD 104 (157)
Q Consensus 89 I~~Lq~qi~~lq~EL~ 104 (157)
|..|++++..++..+.
T Consensus 17 l~~l~~~i~~l~~~~~ 32 (133)
T d1fxkc_ 17 VELIQQQMEAVRATIS 32 (133)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 17
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.67 E-value=75 Score=19.25 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572 86 VGAISVLQRQVMRLQRELDATNADLIR 112 (157)
Q Consensus 86 ~G~I~~Lq~qi~~lq~EL~~~~~~L~~ 112 (157)
+-.|..|+.++..+..++...+.+...
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~ 72 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRH 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888777766543
No 18
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.12 E-value=87 Score=19.45 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=31.4
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572 77 RLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113 (157)
Q Consensus 77 R~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~ 113 (157)
...+|+..-.-.|..++.+.+.++.+|...+..+...
T Consensus 38 ~~~~~~~~d~~~v~~l~~~h~~~~~~i~~~~~~v~~l 74 (124)
T d1quua1 38 LQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQI 74 (124)
T ss_dssp HCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4477888889999999999999999999888777654
Done!