BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031573
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 79/94 (84%)
Query: 62 LDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIA 121
L +KMPKKP TAFF+FL+DFRK +QE+NPD+KSMR IGK CGEKWKTMTYEEKVKYYDIA
Sbjct: 58 LQTKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIA 117
Query: 122 TEKRAEFDRAMADYIKRKENGKVENSEEDSEFDE 155
TEKR EF RAM +Y KR E+G + SE DS++ E
Sbjct: 118 TEKREEFHRAMTEYTKRMESGAHDESETDSDYSE 151
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 68/100 (68%)
Query: 56 KKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKV 115
K+K K D PK+ P+AFF FLEDFR F+++NP++K++ A+GKA G+KWK+M+ EK
Sbjct: 42 KEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKA 101
Query: 116 KYYDIATEKRAEFDRAMADYIKRKENGKVENSEEDSEFDE 155
Y + A +++AE+++ M Y K E G E+ + SE ++
Sbjct: 102 PYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEKSRSEIND 141
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 56/79 (70%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F+ DFR+ +++ +P+ KS+ A+GKACGE+WK+++ EEK Y D A
Sbjct: 41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRAL 100
Query: 123 EKRAEFDRAMADYIKRKEN 141
+K+ E++ + Y K+ E
Sbjct: 101 KKKEEYEITLQAYNKKLEG 119
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+P +AFF F+EDFR ++E++P KS+ A+GKA GEKWK+++ EK Y A
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 123 EKRAEFDRAMADYIKRKENGKVENSEEDSEFDE 155
+++ E+++ M Y K+ E G E+ E D E
Sbjct: 91 KRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSE 123
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 10/115 (8%)
Query: 49 KRVTTKLKK--KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKW 106
+R+ T+ +K K K D PK+PP+AFF FLEDFRK F NP+ KS+ +GKA G +W
Sbjct: 15 QRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARW 74
Query: 107 KTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGKVENSEED------SEFDE 155
K MT E+K Y A ++ E+ + + Y + +G N EED SE DE
Sbjct: 75 KAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGT--NREEDDSDKSKSEVDE 127
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+P +AFF F+EDFR+ F+++NP KS+ +GKA G+KWK+++ EK Y A
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 123 EKRAEFDRAMADYIKRKENGKVENSEEDSEFDE 155
+++ E+++ + Y K+ E G E+ E D E
Sbjct: 94 KRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSE 126
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 37 VGIEKEGKSISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMR 96
+ + K+G + A++ K K D PK+PP+AFF F+E+FRK F +++P+ K++
Sbjct: 17 LAVNKKGAATKARKPAGKGKAAK---DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVS 73
Query: 97 AIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENG 142
A+GKA G KWKTM+ EK Y + +++ E+++ M Y K++ G
Sbjct: 74 AVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PKKPP+ FF FL+DFRK F NPD KS+ +G+A G+KWKTMT EE+ + +
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQ 89
Query: 123 EKRAEFDRAMADYIKRKENG 142
K+ E+ M Y NG
Sbjct: 90 SKKTEYAVTMQQYNMELANG 109
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 53/75 (70%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+ P+AFF F+E+FRK F+E+NP KS+ A+GKA G++WK+++ +K Y A
Sbjct: 37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKAN 96
Query: 123 EKRAEFDRAMADYIK 137
+ + E+++A+A Y K
Sbjct: 97 KLKLEYNKAIAAYNK 111
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 54/77 (70%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F+EDFRK ++E++P+ KS+ +GKA G+KWK +T EK + A
Sbjct: 32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAE 91
Query: 123 EKRAEFDRAMADYIKRK 139
+++ E+++ + Y K++
Sbjct: 92 KRKQEYEKNLQAYNKKQ 108
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+ P+AFF F+ +FR+ F+++NP KS+ A+GKA GE+WK+++ EK Y A
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 123 EKRAEFDRAMADYIK 137
+ + E+++A+A Y K
Sbjct: 98 KLKGEYNKAIAAYNK 112
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 64 SKMPKKPPTAFFYFLEDFRKGFQ-EQNPDI-KSMRAIGKACGEKWKTMTYEEKVKYYDIA 121
S PK+P TAFF F+ DFRK F+ E N + K IG GEKWK++T EEK Y D A
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIG---GEKWKSLTEEEKKVYLDKA 168
Query: 122 TEKRAEFDRAM 132
E +AE+++++
Sbjct: 169 AELKAEYNKSL 179
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F +FR + NP I S+ + K GE W ++ EK Y + A
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +ADY
Sbjct: 148 KLKEKYEKDVADY 160
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 72 TAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130
+A+ +F++ R+ +++NP++ A K C E+WKTM+ +EK K+ ++A + +DR
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 131 AMADY 135
M DY
Sbjct: 74 EMKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+ FF F +FR + NP I S+ + K GE W ++ EK Y + A
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 123 EKRAEFDRAMADYIKRKENGKVENS 147
+ + ++++ +ADY K GK + +
Sbjct: 148 KLKEKYEKDVADY---KSKGKFDGA 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 72 TAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130
+A+ +F++ R+ +++NP++ A K C E+WKTM+ +EK K+ ++A + +DR
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 131 AMADY 135
M DY
Sbjct: 74 EMKDY 78
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+ +A+ +F D R + NP I + +GKA GEKWKT+T EKV Y + AT
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 123 EKRAEFDRAMADYIKRKENGKVENSEEDSEFDEYE 157
+ KR E+ K +EFDE E
Sbjct: 80 ADK-----------KRYEDEKAAYKANAAEFDEEE 103
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+ FF F +FR + NP I S+ + K GE W ++ EK Y A
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 123 EKRAEFDRAMADYIKRKENGKVENS 147
+ + ++++ +ADY K GK + +
Sbjct: 148 KLKEKYEKDVADY---KSKGKFDGA 169
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 72 TAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130
+A+ +F++ R+ +++NP++ A K C E+WKTM+ +EK K+ ++A + +DR
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 131 AMADY 135
M DY
Sbjct: 74 EMKDY 78
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+ FF F +FR + NP I S+ + K GE W ++ EK Y + A
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +ADY
Sbjct: 147 KLKEKYEKDVADY 159
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 72 TAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130
+A+ +F++ R+ ++NP++ A K C E+WKTM+ +EK K+ ++A + +DR
Sbjct: 14 SAYAFFVQTCREE-HKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 72
Query: 131 AMADY 135
M DY
Sbjct: 73 EMKDY 77
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+ FF F +FR + NP I S+ + K GE W + EK Y A
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 123 EKRAEFDRAMADYIKRKENGKVENS 147
+ + ++++ +ADY K GK + +
Sbjct: 148 KLKEKYEKDVADY---KSKGKFDGA 169
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 72 TAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130
+A+ +F++ R+ +++NP++ A K C E+WKTM+ +EK K+ ++A + +DR
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 131 AMADY 135
M DY
Sbjct: 74 EMKDY 78
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 51 VTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMT 110
+ K +KK D PK+P +AFF F DFR + + P + S+ + K GEKW +T
Sbjct: 78 IPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
Query: 111 YEEKVKYYDIATEKRAEFDRAMADYIKRKENGKVENS 147
E+KV Y A+ + ++++ + Y + GKV S
Sbjct: 137 AEDKVPYEKKASRLKEKYEKDITAY---RNKGKVPVS 170
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIA 121
D + P+ +++ YF++ R+ ++++P+ + K C E+WKTM+ +EK K+ D+A
Sbjct: 4 DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 63
Query: 122 TEKRAEFDRAMADYI 136
+ ++R M YI
Sbjct: 64 KLDKVRYEREMRSYI 78
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 LAKSDKARYDREMKNYV 79
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+PP+AFF F + R + ++P + S+ K GE W + ++K Y A + +
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 127 EFDRAMADY 135
++++ +A Y
Sbjct: 154 KYEKDIAAY 162
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 LAKSDKARYDREMKNYV 79
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+PP+AFF F + R + ++P + S+ K GE W + ++K Y A + +
Sbjct: 95 PKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 127 EFDRAMADY 135
++++ +A Y
Sbjct: 154 KYEKDIAAY 162
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 MAKSDKARYDREMKNYV 79
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+PP+AFF F + R + ++P + S+ K GE W + ++K Y A + +
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 127 EFDRAMADY 135
++++ +A Y
Sbjct: 154 KYEKDIAAY 162
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 MAKSDKARYDREMKNYV 79
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+PP+AFF F + R + ++P + S+ K GE W + ++K Y A + +
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 127 EFDRAMADY 135
++++ +A Y
Sbjct: 154 KYEKDIAAY 162
>sp|Q6P8W9|HMGB4_MOUSE High mobility group protein B4 OS=Mus musculus GN=Hmgb4 PE=2 SV=1
Length = 181
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIA 121
D PK +++ +F+ +FR F+EQ P+ + + C EKW++++ EK KY +A
Sbjct: 5 DQLRPKVNVSSYIHFMLNFRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEALA 64
Query: 122 TEKRAEFDRAMADYI 136
+A + + M +YI
Sbjct: 65 ELDKARYQQEMMNYI 79
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D K P+KPP++F F D +++NPD ++ + KA G+ W T EK Y A
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQ-VAKAAGKMWSTTDEAEKKPYEQKAA 147
Query: 123 EKRAEF 128
RA++
Sbjct: 148 LMRAKY 153
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 MAKSDKARYDREMKNYV 79
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+PP+AFF F + R + ++P + S+ K GE W + ++K Y A + +
Sbjct: 95 PKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKE 153
Query: 127 EFDRAMADY 135
++++ +A Y
Sbjct: 154 KYEKDIAAY 162
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 44 KSISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACG 103
K+ + + T K++K+ K D PK+ +A+ +F + R+ +E+NP + S +GK G
Sbjct: 3 KAAAKSKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILG 61
Query: 104 EKWKTMTYEEKVKY 117
E+WK ++ +++ Y
Sbjct: 62 ERWKALSDKQRAPY 75
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 48 AKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWK 107
A R T KKK D PK+ +A+ +F D R +E+NP I S +GK GEKWK
Sbjct: 12 ATRETGGRKKK----DPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWK 66
Query: 108 TMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGKVENSEEDS 151
+++ +E+ Y D A + ++ A Y + G+ E EE S
Sbjct: 67 SLSDKERKPYEDKAAADKKRYEDEKAAY----KAGEAEEDEESS 106
>sp|P40632|NHP1_BABBO High mobility group protein homolog NHP1 OS=Babesia bovis PE=1 SV=1
Length = 97
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDI-KSMRAIGKACGEKWKTMTYEEKVKYYD 119
K D PK+ +++ +F ++ R +NP+I K + AIGK G W ++ EEK Y
Sbjct: 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYER 76
Query: 120 IATEKRAEFDRAMADYIKRK 139
++ E R ++R A+Y +RK
Sbjct: 77 MSDEDRVRYEREKAEYAQRK 96
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 48 AKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWK 107
+K+ T KK K D PK+ +A+ +F++D+R+ + +NP+ + +GK G KW+
Sbjct: 9 SKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWR 67
Query: 108 TMTYEEKVKYYDIATEKRAEFDRAMADY 135
M EK Y A + DR ADY
Sbjct: 68 EMNENEKKPYEAKAKADKERADRENADY 95
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3 SV=1
Length = 116
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 48 AKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWK 107
+K+ T KK K D PK+ +A+ +F++D+R+ + +NP+ + +GK G KW+
Sbjct: 9 SKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWR 67
Query: 108 TMTYEEKVKYYDIATEKRAEFDRAMADY 135
M EK Y A + DR ADY
Sbjct: 68 EMNENEKKPYEAKAKADKERADRENADY 95
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 OS=Drosophila melanogaster GN=Dsp1
PE=2 SV=1
Length = 393
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 51 VTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMT 110
V + KK+ + D PK+ +AFF+F D R + NP+ + I K G KW +
Sbjct: 255 VVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVD 313
Query: 111 YEEKVKYYDIATEKRAEFDRAMADYIKRKENGKVENS 147
E K KY +A +A ++R M +Y K +GK+ S
Sbjct: 314 PEVKQKYESMAERDKARYEREMTEY---KTSGKIAMS 347
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRA-IGKACGEKWKTMTYEEKVKYYD 119
K D+K P+ TA+ YF++ R+ ++++PD + A + C E+WKTM +EK ++++
Sbjct: 174 KADAK-PRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHE 232
Query: 120 IATEKRAEFDRAMADYI 136
+A + + ++ M +Y+
Sbjct: 233 MAEKDKQRYEAEMQNYV 249
>sp|Q4PBZ9|NHP6_USTMA Non-histone chromosomal protein 6 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=NHP6 PE=3 SV=2
Length = 99
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 45 SISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGE 104
S S ++ TTK KK D PK+P +A+ +F +D R+ + NP+ +G+ G
Sbjct: 11 STSTQKRTTKAKK-----DPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGA 64
Query: 105 KWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
KWK M+ EK Y D+A +A + A Y KR+
Sbjct: 65 KWKEMSEAEKKPYNDMANRDKARAEAEKAAYNKRR 99
>sp|Q9USU7|YHHB_SCHPO HMG box-containing protein C28F2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC28F2.11 PE=1 SV=1
Length = 310
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 28 PTRHSVVAAVGIEKEGKSISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFR----K 83
P + + A +E +++ V + K + D PK+PP+A+ F ++ R +
Sbjct: 78 PKKATPAAVAPVEATSAVDTSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQRSEIKE 137
Query: 84 GFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGK 143
E++ D+K + KA EKW +++ +++ Y + A++ R ++ MA Y KEN
Sbjct: 138 SLGEKSNDVKE---VNKAMHEKWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENAS 194
Query: 144 VENS 147
V +S
Sbjct: 195 VADS 198
>sp|Q6BRB4|NHP6_DEBHA Non-histone chromosomal protein 6 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NHP6 PE=3 SV=1
Length = 92
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+ +A+ +F + R + +NP I S +GK GEKWK +T E+K+ Y + A
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALTPEDKIPYENKAD 73
Query: 123 EKRAEFDRAMADYIKR 138
+ +++ A+Y K+
Sbjct: 74 TDKKRYEKEKAEYAKK 89
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIATEKR 125
PK +++ +FL ++R F+EQ P+ + + C EKW++++ EK KY +A +
Sbjct: 9 PKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLDK 68
Query: 126 AEFDRAMADYI 136
A + M +Y+
Sbjct: 69 ARYQEEMMNYV 79
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D + P++PP++F F +D + +NP+ S+ + KA G+ W T T EK Y
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNW-SVVQVAKATGKMWSTATDLEKHPY----- 142
Query: 123 EKRAEFDRA 131
E+R RA
Sbjct: 143 EQRVALLRA 151
>sp|Q9T012|HMG13_ARATH High mobility group B protein 13 OS=Arabidopsis thaliana GN=HMGB13
PE=2 SV=1
Length = 446
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 40 EKEGKSISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIG 99
EK I + T K KKK+E +D PKKP +++F F +D RK E++P I + +
Sbjct: 345 EKTDNIIKKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINN-STVT 403
Query: 100 KACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139
KW + EEK Y A E + + + +Y K K
Sbjct: 404 AHISLKWMELGEEEKQVYNSKAAELMEAYKKEVEEYNKTK 443
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA 126
PK+P +A+ + + R + +N KS+ + K GE+WK ++ E+K Y +A + +
Sbjct: 246 PKQPISAYLIYANERRAALKGEN---KSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKE 302
Query: 127 EFDRAMADYIKRKENGKVENSEEDSEF 153
+ + M Y + KE + +E+ EF
Sbjct: 303 IYLQEMEGYKRTKEEEAMSQKKEEEEF 329
>sp|Q32L34|HMGB4_BOVIN High mobility group protein B4 OS=Bos taurus GN=HMGB4 PE=2 SV=1
Length = 194
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D PK +++ +FL ++R F+EQ P+ + + C EKW++++ EK KY
Sbjct: 3 KRDQLKPKANVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKYEA 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A + M +Y
Sbjct: 63 LAKLDKARYQEEMMNYF 79
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D P++PP++F F +D + +NP S+ + KA G+ W T +K Y A
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENPSW-SVVQVAKASGKMWSAKTDVDKQPYEQRAA 147
Query: 123 EKRAEFDRAMADY 135
RA++ ++ Y
Sbjct: 148 LLRAKYREELSVY 160
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D K P+ +++ +F++ R+ ++++PD + K C E+WKTM+ +EK K+ D
Sbjct: 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A ++R M YI
Sbjct: 63 MAKADKARYEREMKTYI 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F ++R + ++P + S+ + K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYD 119
K D P+ +++ YF++ R+ ++++PD + + C E+WKTM+ +EK K+ +
Sbjct: 3 KGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEE 62
Query: 120 IATEKRAEFDRAMADYI 136
+A +A +DR M +Y+
Sbjct: 63 MAKGDKARYDREMKNYV 79
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+PP+AFF F + R + +P + S+ K GE W ++K Y A
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 123 EKRAEFDRAMADY 135
+ + ++++ +A Y
Sbjct: 150 KLKEKYEKDIAAY 162
>sp|Q9UVL1|NHP6_CANAL Non-histone chromosomal protein 6 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=NHP6 PE=3 SV=1
Length = 92
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122
D PK+ +A+ +F + R + +NP I S +GK GEKWK + E+K+ Y + A
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALNSEDKLPYENKAE 73
Query: 123 EKRAEFDRAMADYIKR 138
+ +++ A+Y K+
Sbjct: 74 ADKKRYEKEKAEYAKK 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,174,271
Number of Sequences: 539616
Number of extensions: 2325602
Number of successful extensions: 7993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 7611
Number of HSP's gapped (non-prelim): 507
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)