Query 031573
Match_columns 157
No_of_seqs 138 out of 1071
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 16:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 1.6E-23 3.4E-28 148.4 10.3 79 58-136 14-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 1.8E-20 3.9E-25 127.6 7.8 73 66-139 1-73 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 6.4E-20 1.4E-24 123.4 7.8 70 67-137 2-71 (72)
4 PF00505 HMG_box: HMG (high mo 99.8 1.6E-19 3.4E-24 119.3 9.2 69 67-136 1-69 (69)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 3.4E-19 7.4E-24 116.6 9.0 65 67-132 1-65 (66)
6 smart00398 HMG high mobility g 99.8 4.9E-19 1.1E-23 116.5 9.2 70 66-136 1-70 (70)
7 COG5648 NHP6B Chromatin-associ 99.8 6.2E-19 1.3E-23 139.7 9.7 98 46-145 51-148 (211)
8 PF09011 HMG_box_2: HMG-box do 99.8 1.6E-18 3.4E-23 116.9 9.2 72 64-136 1-73 (73)
9 cd00084 HMG-box High Mobility 99.7 2E-17 4.3E-22 107.6 9.0 65 67-132 1-65 (66)
10 KOG0381 HMG box-containing pro 99.7 4.9E-17 1.1E-21 114.2 10.1 76 63-139 17-95 (96)
11 KOG0527 HMG-box transcription 99.7 1.9E-17 4.1E-22 140.3 6.0 77 61-138 57-133 (331)
12 KOG0526 Nucleosome-binding fac 99.6 2.1E-16 4.6E-21 139.0 6.1 77 56-137 525-601 (615)
13 KOG4715 SWI/SNF-related matrix 99.2 1.7E-11 3.6E-16 102.8 7.2 77 61-138 59-135 (410)
14 KOG3248 Transcription factor T 99.2 2.5E-11 5.5E-16 102.4 5.7 71 66-137 191-261 (421)
15 KOG0528 HMG-box transcription 99.1 4E-11 8.7E-16 104.9 1.0 75 66-141 325-399 (511)
16 KOG2746 HMG-box transcription 98.5 1.1E-07 2.5E-12 86.2 4.1 70 61-131 176-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.1 1.5E-05 3.3E-10 54.5 7.0 75 66-142 3-77 (85)
18 PF06382 DUF1074: Protein of u 97.2 0.0017 3.7E-08 50.9 7.2 49 71-124 83-131 (183)
19 PF04690 YABBY: YABBY protein; 97.1 0.001 2.2E-08 51.9 5.5 45 65-110 120-164 (170)
20 COG5648 NHP6B Chromatin-associ 96.7 0.0014 3.1E-08 52.5 3.0 68 65-133 142-209 (211)
21 PF08073 CHDNT: CHDNT (NUC034) 95.6 0.014 3.1E-07 37.4 3.1 40 71-111 13-52 (55)
22 PF06244 DUF1014: Protein of u 91.8 0.28 6E-06 36.4 4.0 49 63-112 69-117 (122)
23 PF04769 MAT_Alpha1: Mating-ty 89.2 1.4 3E-05 35.3 6.2 54 62-122 39-92 (201)
24 TIGR03481 HpnM hopanoid biosyn 89.1 1.2 2.6E-05 35.4 5.8 45 94-138 65-111 (198)
25 PRK15117 ABC transporter perip 86.0 2.5 5.4E-05 33.8 5.9 49 89-138 65-115 (211)
26 PF05494 Tol_Tol_Ttg2: Toluene 82.7 2.5 5.5E-05 32.1 4.5 47 90-137 36-84 (170)
27 KOG3223 Uncharacterized conser 73.4 4.4 9.5E-05 32.5 3.4 50 68-121 166-215 (221)
28 COG2854 Ttg2D ABC-type transpo 65.8 14 0.0003 29.8 4.8 52 94-145 71-124 (202)
29 PF11304 DUF3106: Protein of u 51.1 72 0.0016 22.7 6.1 20 100-119 14-33 (107)
30 PF13875 DUF4202: Domain of un 47.7 40 0.00086 26.8 4.5 40 73-116 131-170 (185)
31 PF12881 NUT_N: NUT protein N 45.7 60 0.0013 27.9 5.6 54 87-141 245-299 (328)
32 KOG3838 Mannose lectin ERGIC-5 44.3 20 0.00043 31.9 2.6 37 109-145 269-305 (497)
33 PRK10363 cpxP periplasmic repr 40.0 82 0.0018 24.6 5.2 42 95-137 110-151 (166)
34 PRK09706 transcriptional repre 39.7 98 0.0021 22.4 5.4 45 97-141 87-131 (135)
35 PF04871 Uso1_p115_C: Uso1 / p 38.7 34 0.00073 25.6 2.8 8 131-138 99-106 (136)
36 PF01352 KRAB: KRAB box; Inte 38.5 27 0.0006 20.7 1.9 30 94-123 2-32 (41)
37 PRK12751 cpxP periplasmic stre 37.4 86 0.0019 24.2 4.9 34 97-130 118-151 (162)
38 PF06945 DUF1289: Protein of u 36.5 54 0.0012 20.2 3.1 25 94-123 23-47 (51)
39 PRK12750 cpxP periplasmic repr 34.3 1.3E+02 0.0027 23.4 5.5 35 98-132 126-160 (170)
40 KOG4032 Uncharacterized conser 34.1 43 0.00093 26.6 2.8 56 94-152 86-142 (184)
41 PF12650 DUF3784: Domain of un 28.2 41 0.00089 23.1 1.7 15 106-120 26-40 (97)
42 PF00887 ACBP: Acyl CoA bindin 28.0 1.5E+02 0.0033 19.8 4.5 53 74-128 30-86 (87)
43 PRK10236 hypothetical protein; 25.3 74 0.0016 26.2 2.9 26 98-123 118-143 (237)
44 TIGR00787 dctP tripartite ATP- 25.0 1.7E+02 0.0037 23.3 5.0 28 103-130 213-240 (257)
45 PF09164 VitD-bind_III: Vitami 24.6 2.2E+02 0.0048 18.9 4.7 33 72-105 9-41 (68)
46 KOG2880 SMAD6 interacting prot 23.7 3.2E+02 0.0069 24.2 6.5 66 71-140 52-120 (424)
47 COG1638 DctP TRAP-type C4-dica 22.8 2E+02 0.0043 24.6 5.1 36 102-137 243-278 (332)
48 cd07081 ALDH_F20_ACDH_EutE-lik 22.7 2.2E+02 0.0049 25.1 5.7 41 97-137 6-46 (439)
49 KOG0674 Calreticulin [Posttran 21.7 1.1E+02 0.0024 26.7 3.4 30 96-125 337-367 (406)
50 KOG1827 Chromatin remodeling c 20.1 8.2 0.00018 36.0 -4.0 44 70-114 552-595 (629)
51 PF13945 NST1: Salt tolerance 20.1 1.5E+02 0.0033 23.6 3.6 29 94-122 99-127 (190)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.90 E-value=1.6e-23 Score=148.37 Aligned_cols=79 Identities=30% Similarity=0.644 Sum_probs=74.3
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~-~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
+++.+||+.||||+||||||+.++|..|..+||++. .+.+|+++||++|+.|++++|.+|+++|..++.+|..+|.+|.
T Consensus 14 ~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~Y~ 93 (94)
T PTZ00199 14 KRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAEYA 93 (94)
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999999999999999999999982 3899999999999999999999999999999999999999995
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.83 E-value=1.8e-20 Score=127.56 Aligned_cols=73 Identities=23% Similarity=0.465 Sum_probs=70.1
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
.|+||+||||||+++.|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+..-
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p 73 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTP 73 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccC
Confidence 378999999999999999999999999 9999999999999999999999999999999999999999998753
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.81 E-value=6.4e-20 Score=123.40 Aligned_cols=70 Identities=31% Similarity=0.516 Sum_probs=67.9
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 67 PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
.|||+||||+|+++.|..++.+||++ ++.+|++.||++|+.|++++|++|.++|..++++|..++++|+.
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y 71 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKW 71 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 47999999999999999999999999 99999999999999999999999999999999999999999974
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.81 E-value=1.6e-19 Score=119.32 Aligned_cols=69 Identities=36% Similarity=0.748 Sum_probs=65.9
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 67 PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
|+||+|||+||+.+.+..|+.+||++ ++.+|++.||++|+.|++++|.+|.+.|..++..|..++.+|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999 9999999999999999999999999999999999999999995
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.80 E-value=3.4e-19 Score=116.61 Aligned_cols=65 Identities=37% Similarity=0.741 Sum_probs=63.6
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 031573 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAM 132 (157)
Q Consensus 67 PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 132 (157)
||+|+|||++|++++|..++..||++ ++.+|++.||++|+.|++++|++|.+.|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999 999999999999999999999999999999999999876
No 6
>smart00398 HMG high mobility group.
Probab=99.80 E-value=4.9e-19 Score=116.48 Aligned_cols=70 Identities=34% Similarity=0.677 Sum_probs=68.0
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
+|++|+|+|+||++++|..+..+||++ ++.+|++.||.+|+.|++++|.+|.+.|..++.+|..++..|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999 9999999999999999999999999999999999999999984
No 7
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.79 E-value=6.2e-19 Score=139.70 Aligned_cols=98 Identities=30% Similarity=0.533 Sum_probs=86.5
Q ss_pred ccccccchhhhhhcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 031573 46 ISAKRVTTKLKKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKR 125 (157)
Q Consensus 46 ~~~~k~k~~~k~kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k 125 (157)
.+..++++ +...++.+|||+||||+||||+|+.++|.+|+..+|++ +|++|++++|++|+.|++++|++|...+..++
T Consensus 51 ~p~~~~ks-k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~ 128 (211)
T COG5648 51 KPRKKTKS-KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEKEPYYKEANSDR 128 (211)
T ss_pred ccccchHH-HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhhhhHHHHHhhHH
Confidence 33444433 23355678999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCC
Q 031573 126 AEFDRAMADYIKRKENGKVE 145 (157)
Q Consensus 126 ~~y~~~~~~Y~~~~~~~~~~ 145 (157)
++|..++..|...+....-.
T Consensus 129 erYq~ek~~y~~k~~~~~~~ 148 (211)
T COG5648 129 ERYQREKEEYNKKLPNKAPI 148 (211)
T ss_pred HHHHHHHHhhhcccCCCCCC
Confidence 99999999999988776653
No 8
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.78 E-value=1.6e-18 Score=116.91 Aligned_cols=72 Identities=33% Similarity=0.675 Sum_probs=63.8
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 64 SKMPKKPPTAFFYFLEDFRKGFQEQ-NPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 64 p~~PKrP~sAy~lF~~e~r~~ik~~-~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
|++||+|+|||+||+.+++..++.. ++.. .+.++++.|+..|+.||++||.+|.++|..++.+|..+|..|.
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999999988 6766 8999999999999999999999999999999999999999985
No 9
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.74 E-value=2e-17 Score=107.62 Aligned_cols=65 Identities=35% Similarity=0.728 Sum_probs=63.1
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 031573 67 PKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAM 132 (157)
Q Consensus 67 PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 132 (157)
|++|+|||++|+.+.|..++.+||++ ++.+|++.||.+|+.|++++|.+|.+.|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999 999999999999999999999999999999999999765
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.72 E-value=4.9e-17 Score=114.23 Aligned_cols=76 Identities=33% Similarity=0.659 Sum_probs=72.4
Q ss_pred CC--CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 031573 63 DS--KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA-DYIKRK 139 (157)
Q Consensus 63 dp--~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~-~Y~~~~ 139 (157)
|| +.|+||++||++|+.+.|..++.+||++ ++.+|++++|++|+.|++++|++|...+..++.+|..+|. .|+..+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66 5999999999999999999999999998 9999999999999999999999999999999999999999 888754
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.70 E-value=1.9e-17 Score=140.27 Aligned_cols=77 Identities=31% Similarity=0.490 Sum_probs=73.4
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
+......||||||||+|++..|.+|-.+||++ .+.||+|+||.+|+.|+++||++|+++|+++|..|++++.+|+++
T Consensus 57 k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYR 133 (331)
T KOG0527|consen 57 KTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYR 133 (331)
T ss_pred CCCccccCCCcchhhhhhHHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccc
Confidence 34556889999999999999999999999999 999999999999999999999999999999999999999999985
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.64 E-value=2.1e-16 Score=139.05 Aligned_cols=77 Identities=31% Similarity=0.590 Sum_probs=72.7
Q ss_pred hhhcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 56 KKKHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADY 135 (157)
Q Consensus 56 k~kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y 135 (157)
++.++++||++|||++||||||++..|..|+.+ ++ ++++|++.+|++|+.|+. |.+|.+.|+.++++|+.+|.+|
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~y 599 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEY 599 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999998 77 999999999999999999 9999999999999999999999
Q ss_pred Hh
Q 031573 136 IK 137 (157)
Q Consensus 136 ~~ 137 (157)
+.
T Consensus 600 k~ 601 (615)
T KOG0526|consen 600 KN 601 (615)
T ss_pred cC
Confidence 93
No 13
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.24 E-value=1.7e-11 Score=102.76 Aligned_cols=77 Identities=23% Similarity=0.479 Sum_probs=73.2
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
.+.|.+|-+|+-.||.|++..++++++.||++ ...+|.++||.+|..|++++|+-|.+.+..++..|.+.|..|...
T Consensus 59 pkpPkppekpl~pymrySrkvWd~VkA~nPe~-kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 59 PKPPKPPEKPLMPYMRYSRKVWDQVKASNPEL-KLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred CCCCCCCCcccchhhHHhhhhhhhhhccCcch-HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 45678899999999999999999999999999 999999999999999999999999999999999999999999863
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.19 E-value=2.5e-11 Score=102.38 Aligned_cols=71 Identities=24% Similarity=0.465 Sum_probs=65.0
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
-.|+|+||||+|++|.|..+.+++--. ...+|.++||.+|..|+-||..+|+++|.++++-|...+..|-+
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctlK-eSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSA 261 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 261 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 458999999999999999999998643 78899999999999999999999999999999999988877754
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.05 E-value=4e-11 Score=104.92 Aligned_cols=75 Identities=27% Similarity=0.429 Sum_probs=70.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKEN 141 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~ 141 (157)
-.||||||||+|.++.|-.|...+||+ ....|+++||.+|+.|+..||++|++.-.++-..|.+.+++|+.+-..
T Consensus 325 HIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRP 399 (511)
T KOG0528|consen 325 HIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRP 399 (511)
T ss_pred cccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCC
Confidence 459999999999999999999999999 999999999999999999999999999999999999999999986543
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.48 E-value=1.1e-07 Score=86.19 Aligned_cols=70 Identities=31% Similarity=0.471 Sum_probs=64.8
Q ss_pred cCCCCCCCCCCchhHhHHHHHH--HHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFR--KGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRA 131 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r--~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~ 131 (157)
+.+..-.++|||||++|++.+| ..+.+.||+. ++..|+++||+.|-.|.+.||+.|.++|.+.++.|.++
T Consensus 176 kr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~-DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 176 KRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQ-DNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred cCcchhhhhhhHHHHHHHhhcCCccchhccCccc-cchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 3344457899999999999999 8999999999 99999999999999999999999999999999999987
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.11 E-value=1.5e-05 Score=54.50 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=60.9
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENG 142 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~~ 142 (157)
.|..|-++--||.+..+..+.+.++.- ...+ .+.+...|+.|++.+|.+|...|.++..+|+.+|.+|+......
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~~ 77 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPADA 77 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 577788999999999999999999875 4444 56899999999999999999999999999999999998765543
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.19 E-value=0.0017 Score=50.87 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=42.9
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 031573 71 PTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEK 124 (157)
Q Consensus 71 ~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~ 124 (157)
-+||+-|+.++|. .|.++ +..|+....+..|..|++.+|..|..++...
T Consensus 83 nnaYLNFLReFRr----kh~~L-~p~dlI~~AAraW~rLSe~eK~rYrr~~~~~ 131 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGL-SPQDLIQRAARAWCRLSEAEKNRYRRMAPSV 131 (183)
T ss_pred chHHHHHHHHHHH----HccCC-CHHHHHHHHHHHHHhCCHHHHHHHHhhcchh
Confidence 4689999999876 56788 9999999999999999999999999976543
No 19
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.13 E-value=0.001 Score=51.93 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=40.4
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMT 110 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls 110 (157)
.+-.|-+|||..|+++..+.|++.+|++ +..|.-..++..|...+
T Consensus 120 EKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 120 EKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFP 164 (170)
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCc
Confidence 3344778999999999999999999999 99999999999998765
No 20
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.69 E-value=0.0014 Score=52.54 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=61.0
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA 133 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 133 (157)
.+|+.|.-+|+-|..+.|+.+...+|+. +..++++.++..|..|++.-|.+|.+.+.+++..|...++
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 4567788888888889999999999998 9999999999999999999999999999999999987654
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.65 E-value=0.014 Score=37.44 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=35.9
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh
Q 031573 71 PTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTY 111 (157)
Q Consensus 71 ~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~ 111 (157)
++-|-+|.+..|+.|...||++ ....|...++.+|+..++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999 999999999999987543
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=91.78 E-value=0.28 Score=36.40 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=41.3
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH
Q 031573 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYE 112 (157)
Q Consensus 63 dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~e 112 (157)
|..+-+|-.-||.-|.....+.|+.++|+| -.+.+-.+|...|..-++.
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgL-rlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGL-RLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHHhcCCCC
Confidence 333445556789999999999999999999 9999999999999887653
No 23
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=89.20 E-value=1.4 Score=35.30 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=39.3
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 031573 62 LDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIAT 122 (157)
Q Consensus 62 ~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~ 122 (157)
.....++||+|+||+|..=+- ...|+. ...+++..|+..|..=+- |..|.-+|.
T Consensus 39 ~~~~~~kr~lN~Fm~FRsyy~----~~~~~~-~Qk~~S~~l~~lW~~dp~--k~~W~l~ak 92 (201)
T PF04769_consen 39 RSPEKAKRPLNGFMAFRSYYS----PIFPPL-PQKELSGILTKLWEKDPF--KNKWSLMAK 92 (201)
T ss_pred ccccccccchhHHHHHHHHHH----hhcCCc-CHHHHHHHHHHHHhCCcc--HhHHHHHhh
Confidence 344578999999999976654 456677 788999999999987443 444544443
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=89.11 E-value=1.2 Score=35.35 Aligned_cols=45 Identities=16% Similarity=0.441 Sum_probs=39.8
Q ss_pred cHHHHHH-HHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 031573 94 SMRAIGK-ACGEKWKTMTYEEKVKYYDIATE-KRAEFDRAMADYIKR 138 (157)
Q Consensus 94 ~~~ei~k-~lge~Wk~ls~eeK~~y~~~A~~-~k~~y~~~~~~Y~~~ 138 (157)
+|..|++ .||..|+.+|+++++.|.+.... ....|-..+..|...
T Consensus 65 Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 65 DLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 7888887 68999999999999999998887 778899999999764
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=85.99 E-value=2.5 Score=33.85 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=41.1
Q ss_pred CCCCCcHHHHHH-HHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 031573 89 NPDIKSMRAIGK-ACGEKWKTMTYEEKVKYYDIATE-KRAEFDRAMADYIKR 138 (157)
Q Consensus 89 ~P~~~~~~ei~k-~lge~Wk~ls~eeK~~y~~~A~~-~k~~y~~~~~~Y~~~ 138 (157)
.|-. +|..|++ .||..|+.++++++..|.+.-.. +..-|-..+..|..+
T Consensus 65 ~p~~-Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 65 LPYV-QVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred cccC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3566 8888877 68999999999999999987766 567899999999754
No 26
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=82.72 E-value=2.5 Score=32.13 Aligned_cols=47 Identities=9% Similarity=0.385 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHH-HHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 031573 90 PDIKSMRAIGKA-CGEKWKTMTYEEKVKYYDIATE-KRAEFDRAMADYIK 137 (157)
Q Consensus 90 P~~~~~~ei~k~-lge~Wk~ls~eeK~~y~~~A~~-~k~~y~~~~~~Y~~ 137 (157)
|-+ ++..|++. ||..|+.|++++++.|...... ....|-..+..|..
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444 77888775 7889999999999999987666 66778888888875
No 27
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.38 E-value=4.4 Score=32.49 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=42.4
Q ss_pred CCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 031573 68 KKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIA 121 (157)
Q Consensus 68 KrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A 121 (157)
+|-.-||.-|-....+.|+.+||++ .++++-.+|-..|..-++. ||..++
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~l-rlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPGL-RLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCCc-cHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 4556679999999999999999999 9999999999999998876 555443
No 28
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.82 E-value=14 Score=29.78 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=40.1
Q ss_pred cHHHHH-HHHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCCC
Q 031573 94 SMRAIG-KACGEKWKTMTYEEKVKYYDIATE-KRAEFDRAMADYIKRKENGKVE 145 (157)
Q Consensus 94 ~~~ei~-k~lge~Wk~ls~eeK~~y~~~A~~-~k~~y~~~~~~Y~~~~~~~~~~ 145 (157)
++.-++ ..||.-|+.+|+++++.|...... +...|-..+..|+.+.-.-...
T Consensus 71 d~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v~~~ 124 (202)
T COG2854 71 DFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKVKPS 124 (202)
T ss_pred cHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCceeCCC
Confidence 554444 358999999999999999986665 6788999999999876544433
No 29
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=51.08 E-value=72 Score=22.72 Aligned_cols=20 Identities=20% Similarity=0.596 Sum_probs=8.6
Q ss_pred HHHHHHhcCCChHHHHHHHH
Q 031573 100 KACGEKWKTMTYEEKVKYYD 119 (157)
Q Consensus 100 k~lge~Wk~ls~eeK~~y~~ 119 (157)
.-+...|+.|++..+..|..
T Consensus 14 ~pl~~~W~~l~~~qr~k~l~ 33 (107)
T PF11304_consen 14 APLAERWNSLPPEQRRKWLQ 33 (107)
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 33444444444444444443
No 30
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=47.70 E-value=40 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=33.1
Q ss_pred hhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 031573 73 AFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVK 116 (157)
Q Consensus 73 Ay~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~ 116 (157)
+-++|+..+...+-..| +...+..+|..-|+.||+..++.
T Consensus 131 acLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHHH
Confidence 46789999999998887 34578888999999999987763
No 31
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=45.69 E-value=60 Score=27.94 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred HhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcC
Q 031573 87 EQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRA-EFDRAMADYIKRKEN 141 (157)
Q Consensus 87 ~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~-~y~~~~~~Y~~~~~~ 141 (157)
...|.+ +..|-..+.-+.|...|.-+|..|+++|++=++ +-+++|+.-+-++..
T Consensus 245 r~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekFmEFEaeEEmq~q~lq~~~ 299 (328)
T PF12881_consen 245 RLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFMEFEAEEEMQIQKLQLMN 299 (328)
T ss_pred hcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHHccCCcHHHHHHHHHHHhc
Confidence 345677 777888888889999999999999999987543 222455555554443
No 32
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=20 Score=31.95 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 031573 109 MTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGKVE 145 (157)
Q Consensus 109 ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~~~~~ 145 (157)
+.+.+|++|.+..+..+..|++...+|++...+..-+
T Consensus 269 ~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd~~~e 305 (497)
T KOG3838|consen 269 MQELEKAKYQEEFEWAQLELEKRKDEFKKSHPDAQGE 305 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhccCCchhhcc
Confidence 4556899999999999999999999999887766554
No 33
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=39.98 E-value=82 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 95 MRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 95 ~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
..++.+.-.++++-|++++|..|......-...+.. +..+..
T Consensus 110 ~Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~-~~~~q~ 151 (166)
T PRK10363 110 QVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD-VTQWQK 151 (166)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHhcCc
Confidence 345777788999999999999999888887777754 555543
No 34
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=39.73 E-value=98 Score=22.40 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 031573 97 AIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKEN 141 (157)
Q Consensus 97 ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~ 141 (157)
.-...|-..|+.|+++++.............|+.-+.+|-.....
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 131 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKARKR 131 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445778889999999999999999999999999999999876543
No 35
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.72 E-value=34 Score=25.56 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.4
Q ss_pred HHHHHHhh
Q 031573 131 AMADYIKR 138 (157)
Q Consensus 131 ~~~~Y~~~ 138 (157)
.+..|+..
T Consensus 99 K~~kyk~r 106 (136)
T PF04871_consen 99 KRKKYKER 106 (136)
T ss_pred HHHHHHHH
Confidence 34444443
No 36
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=38.52 E-value=27 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=16.6
Q ss_pred cHHHHHHHHH-HHhcCCChHHHHHHHHHHHH
Q 031573 94 SMRAIGKACG-EKWKTMTYEEKVKYYDIATE 123 (157)
Q Consensus 94 ~~~ei~k~lg-e~Wk~ls~eeK~~y~~~A~~ 123 (157)
+|.+++--+. +.|..|.+.+|..|.+.-.+
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred eEEEEEEEcChhhcccccceecccchhHHHH
Confidence 3455555555 55999999999999876543
No 37
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=37.44 E-value=86 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 031573 97 AIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130 (157)
Q Consensus 97 ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~ 130 (157)
++.+..-+++..|++++|..|.+..++-..+...
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~~ 151 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQQ 151 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3556667889999999999999887776665543
No 38
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=36.52 E-value=54 Score=20.22 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 031573 94 SMRAIGKACGEKWKTMTYEEKVKYYDIATE 123 (157)
Q Consensus 94 ~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~ 123 (157)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 5667755 999999998776654443
No 39
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=34.28 E-value=1.3e+02 Score=23.35 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 031573 98 IGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAM 132 (157)
Q Consensus 98 i~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 132 (157)
+.+..-+++..|++++|..|.+...+-.+.|...+
T Consensus 126 ~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 126 MLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445668999999999999998888878877766
No 40
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.15 E-value=43 Score=26.55 Aligned_cols=56 Identities=7% Similarity=0.121 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCCCcCCCC
Q 031573 94 SMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAM-ADYIKRKENGKVENSEEDSE 152 (157)
Q Consensus 94 ~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~-~~Y~~~~~~~~~~~~e~~~~ 152 (157)
+..+|+..|-..|.......=..+..+....- ...+ ..|.......+.+++++|.+
T Consensus 86 S~~~ia~~L~n~f~~~~~~N~~~ieells~l~---~q~~kkt~~~v~~~~~~dEDdedvd 142 (184)
T KOG4032|consen 86 SLPEIAQLLLNLFHDIQNGNYAIIEELLSKLP---KQDLKKTKTPVDGGSESDEDDEDVD 142 (184)
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc---hhhhhhheecccCCCcccccccccc
Confidence 67788888888888777665555555554443 2222 34444444444444444433
No 41
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=28.18 E-value=41 Score=23.12 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=13.1
Q ss_pred hcCCChHHHHHHHHH
Q 031573 106 WKTMTYEEKVKYYDI 120 (157)
Q Consensus 106 Wk~ls~eeK~~y~~~ 120 (157)
|+.||++||+.|...
T Consensus 26 yntms~eEk~~~D~~ 40 (97)
T PF12650_consen 26 YNTMSKEEKEKYDKK 40 (97)
T ss_pred cccCCHHHHHHhhHH
Confidence 899999999999753
No 42
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=28.03 E-value=1.5e+02 Score=19.81 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=32.4
Q ss_pred hHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHHHHH
Q 031573 74 FFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMT----YEEKVKYYDIATEKRAEF 128 (157)
Q Consensus 74 y~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls----~eeK~~y~~~A~~~k~~y 128 (157)
|-||.+.....+....|+. +.-+.+.--+-|+.|. ++-++.|.+...+....|
T Consensus 30 YalyKQAt~Gd~~~~~P~~--~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGF--FDIEGRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHTSS--S-CTTT--TCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcc--hhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 6667666666666666765 3444555567798776 455677777777766555
No 43
>PRK10236 hypothetical protein; Provisional
Probab=25.32 E-value=74 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH
Q 031573 98 IGKACGEKWKTMTYEEKVKYYDIATE 123 (157)
Q Consensus 98 i~k~lge~Wk~ls~eeK~~y~~~A~~ 123 (157)
+.+.+...|..|+++|++.+...-..
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~~ 143 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVDA 143 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhh
Confidence 67889999999999999888764443
No 44
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=25.03 E-value=1.7e+02 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 031573 103 GEKWKTMTYEEKVKYYDIATEKRAEFDR 130 (157)
Q Consensus 103 ge~Wk~ls~eeK~~y~~~A~~~k~~y~~ 130 (157)
...|..|+++.|....+.+.+.-..+..
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~ 240 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRK 240 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999998877776554443
No 45
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=24.57 E-value=2.2e+02 Score=18.93 Aligned_cols=33 Identities=9% Similarity=0.263 Sum_probs=23.9
Q ss_pred chhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 031573 72 TAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEK 105 (157)
Q Consensus 72 sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~ 105 (157)
+-|.=|-+....+++...|+. +..+|...+.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~a-t~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDA-TPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Confidence 347778888888999999999 888887776553
No 46
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=23.72 E-value=3.2e+02 Score=24.24 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=37.6
Q ss_pred CchhHhHHH---HHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031573 71 PTAFFYFLE---DFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKE 140 (157)
Q Consensus 71 ~sAy~lF~~---e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~ 140 (157)
-+||+||.+ =+...| ..|||.. .+-...-...+.|-++.-..-.....++..+|..++.+|.....
T Consensus 52 enafvLy~ry~tLfiEki-pkHrDy~---s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~ 120 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKI-PKHRDYR---SVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKK 120 (424)
T ss_pred chhhhHHHHHHHHHHHhc-ccCcchh---hhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 467777643 222222 3466652 22223333334444665666667777888888888888877653
No 47
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.79 E-value=2e+02 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 102 CGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 102 lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
-...|..|+++.+....+.+.+......+...++..
T Consensus 243 s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~ 278 (332)
T COG1638 243 SKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELED 278 (332)
T ss_pred cHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999888877766665555544
No 48
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=22.72 E-value=2.2e+02 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 97 AIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 97 ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
+.++.....|..++..+|..+...+....+++..++.....
T Consensus 6 ~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~ 46 (439)
T cd07081 6 AAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAV 46 (439)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677899999999999998888888888877776543
No 49
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=1.1e+02 Score=26.65 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHH-HHhcCCChHHHHHHHHHHHHHH
Q 031573 96 RAIGKACG-EKWKTMTYEEKVKYYDIATEKR 125 (157)
Q Consensus 96 ~ei~k~lg-e~Wk~ls~eeK~~y~~~A~~~k 125 (157)
.+.+..++ +.|..|.+.+|..|....+..+
T Consensus 337 ~eyA~k~~~eTwg~~k~~ek~~~~~~~k~qr 367 (406)
T KOG0674|consen 337 EEYAEKFANETWGKTKDAEKEMKDKADKEQR 367 (406)
T ss_pred HHHHHHHHHhhhcccccHHHHhhhhhhhhcc
Confidence 45555555 8899999999999887665543
No 50
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=20.14 E-value=8.2 Score=36.00 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=39.6
Q ss_pred CCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 031573 70 PPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEK 114 (157)
Q Consensus 70 P~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK 114 (157)
-+++|++|+.+.+..+-..+|+. .++++...+|.-|..|+...|
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v-~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTV-GFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCc-ccceeEEeecCCcccCccccc
Confidence 45779999999999999999999 999999999999999994444
No 51
>PF13945 NST1: Salt tolerance down-regulator
Probab=20.09 E-value=1.5e+02 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 031573 94 SMRAIGKACGEKWKTMTYEEKVKYYDIAT 122 (157)
Q Consensus 94 ~~~ei~k~lge~Wk~ls~eeK~~y~~~A~ 122 (157)
+..+....|-+.|-.|+++||.-...+-+
T Consensus 99 Ss~eEre~LkeFW~SL~eeERr~LVkIEK 127 (190)
T PF13945_consen 99 SSQEEREKLKEFWESLSEEERRSLVKIEK 127 (190)
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHhhH
Confidence 34566778999999999999987765443
Done!