Query 031573
Match_columns 157
No_of_seqs 138 out of 1071
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 01:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2co9_A Thymus high mobility gr 99.9 4.3E-25 1.5E-29 157.1 12.1 93 58-151 9-101 (102)
2 2eqz_A High mobility group pro 99.9 2.8E-24 9.6E-29 148.2 10.3 79 58-136 7-86 (86)
3 2crj_A SWI/SNF-related matrix- 99.9 9.1E-24 3.1E-28 147.4 10.6 87 61-148 2-88 (92)
4 1k99_A Upstream binding factor 99.9 3.5E-24 1.2E-28 151.7 7.5 83 58-141 2-84 (99)
5 1hme_A High mobility group pro 99.9 4.6E-24 1.6E-28 143.8 7.3 76 61-137 1-76 (77)
6 2lhj_A High mobility group pro 99.9 2.1E-24 7.3E-29 152.0 4.4 81 58-139 14-96 (97)
7 1cg7_A Protein (NON histone pr 99.9 2.3E-24 7.9E-29 150.8 3.6 81 58-139 12-92 (93)
8 2cs1_A PMS1 protein homolog 1; 99.9 5.7E-23 2E-27 143.3 10.5 82 61-143 2-83 (92)
9 3nm9_A HMG-D, high mobility gr 99.9 5E-23 1.7E-27 137.8 8.9 72 64-138 1-72 (73)
10 2e6o_A HMG box-containing prot 99.9 1.8E-23 6.3E-28 144.5 6.4 76 60-136 11-86 (87)
11 1wgf_A Upstream binding factor 99.9 5.2E-24 1.8E-28 148.2 3.4 75 58-133 12-86 (90)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 2.4E-23 8.2E-28 140.0 6.3 74 63-137 1-74 (76)
13 1aab_A High mobility group pro 99.9 1.2E-23 4.2E-28 143.9 4.4 78 61-139 2-81 (83)
14 1wxl_A Single-strand recogniti 99.9 1.6E-22 5.5E-27 135.3 7.0 72 64-138 1-72 (73)
15 1j46_A SRY, sex-determining re 99.9 2.6E-22 8.9E-27 138.0 7.9 76 63-139 1-76 (85)
16 1wz6_A HMG-box transcription f 99.9 1.3E-22 4.5E-27 138.4 5.0 78 61-139 2-79 (82)
17 1ckt_A High mobility group 1 p 99.9 4E-22 1.4E-26 132.2 7.1 70 66-135 1-71 (71)
18 4a3n_A Transcription factor SO 99.9 2.6E-22 8.8E-27 132.9 5.8 71 65-136 1-71 (71)
19 2gzk_A Sex-determining region 99.9 1.2E-21 4.1E-26 148.3 9.9 78 59-137 81-158 (159)
20 4euw_A Transcription factor SO 99.9 6.3E-22 2.2E-26 141.7 7.8 78 61-139 24-101 (106)
21 1gt0_D Transcription factor SO 99.9 6.7E-22 2.3E-26 134.2 7.1 74 65-139 1-74 (80)
22 3f27_D Transcription factor SO 99.9 5.4E-22 1.8E-26 135.4 6.6 75 63-138 3-77 (83)
23 2lef_A LEF-1 HMG, protein (lym 99.9 1.4E-21 4.8E-26 134.5 7.7 74 65-139 1-74 (86)
24 1l8y_A Upstream binding factor 99.8 3.3E-21 1.1E-25 134.8 9.4 77 65-143 3-79 (91)
25 1v64_A Nucleolar transcription 99.8 1.9E-21 6.7E-26 139.7 8.3 79 59-142 9-88 (108)
26 2yrq_A High mobility group pro 99.8 3.3E-21 1.1E-25 148.0 9.7 79 59-138 94-172 (173)
27 1i11_A Transcription factor SO 99.8 9.3E-22 3.2E-26 133.9 5.6 74 64-138 2-75 (81)
28 3u2b_C Transcription factor SO 99.8 1.4E-21 4.7E-26 132.1 6.4 73 65-138 1-73 (79)
29 1v63_A Nucleolar transcription 99.8 3.4E-20 1.2E-24 131.7 9.7 79 62-143 4-82 (101)
30 3fgh_A Transcription factor A, 99.8 1.4E-20 4.8E-25 123.8 7.1 67 65-136 1-67 (67)
31 2yrq_A High mobility group pro 99.8 2.3E-20 7.8E-25 143.3 8.8 80 59-139 8-89 (173)
32 2d7l_A WD repeat and HMG-box D 99.8 1.8E-20 6.1E-25 128.4 6.5 62 62-124 1-63 (81)
33 3tmm_A Transcription factor A, 99.8 9.2E-20 3.1E-24 147.0 7.9 78 61-139 36-113 (238)
34 2yuk_A Myeloid/lymphoid or mix 99.8 1.7E-20 6E-25 131.0 1.1 67 59-130 15-83 (90)
35 3tq6_A Transcription factor A, 99.8 4.4E-19 1.5E-23 141.0 8.7 76 63-139 6-81 (214)
36 2cto_A Novel protein; high mob 99.8 1.2E-19 4.2E-24 127.4 4.8 69 61-132 5-76 (93)
37 3tq6_A Transcription factor A, 99.8 2.9E-19 9.9E-24 142.0 3.7 80 59-143 107-186 (214)
38 3tmm_A Transcription factor A, 99.7 4.3E-19 1.5E-23 143.0 2.8 80 59-143 139-218 (238)
39 2gzk_A Sex-determining region 99.7 4.1E-17 1.4E-21 123.3 7.3 74 64-138 2-75 (159)
40 2qgu_A Probable signal peptide 75.7 3.2 0.00011 31.9 4.4 48 90-138 70-119 (211)
41 1ayz_A UBC2, ubiquitin-conjuga 66.2 2.1 7.3E-05 31.9 1.3 11 114-124 134-144 (169)
42 1ayz_A UBC2, ubiquitin-conjuga 47.3 14 0.00047 27.3 3.0 19 122-140 131-149 (169)
43 1j1d_B Troponin T, TNT; THIN f 29.7 1.1E+02 0.0037 21.0 5.2 51 77-130 29-79 (106)
44 2o37_A Protein SIS1; HSP40, J- 26.2 91 0.0031 20.1 4.1 40 78-117 26-66 (92)
45 2yua_A Williams-beuren syndrom 25.7 99 0.0034 20.2 4.3 40 79-118 36-79 (99)
46 2byk_A Chrac-16; nucleosome sl 23.8 17 0.00057 26.4 0.0 11 94-104 75-85 (140)
47 3o39_A Periplasmic protein rel 21.8 1.1E+02 0.0039 20.8 4.1 27 96-122 78-104 (108)
48 2och_A Hypothetical protein DN 20.6 1.2E+02 0.0043 18.3 3.8 37 79-115 27-64 (73)
No 1
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.93 E-value=4.3e-25 Score=157.07 Aligned_cols=93 Identities=24% Similarity=0.412 Sum_probs=86.8
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
+++.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+.
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCcCCC
Q 031573 138 RKENGKVENSEEDS 151 (157)
Q Consensus 138 ~~~~~~~~~~e~~~ 151 (157)
.+......+.+-.+
T Consensus 88 ~~~~~~~~e~~~~~ 101 (102)
T 2co9_A 88 SLVSKSYTDSGPSS 101 (102)
T ss_dssp HHTSSCCCCCSTTC
T ss_pred hcccccccccccCC
Confidence 99998877766543
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=148.21 Aligned_cols=79 Identities=33% Similarity=0.648 Sum_probs=74.2
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~-~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
++.++||++||||+||||||++++|..|+.+||++. ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y~ 86 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 86 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455789999999999999999999999999999982 2799999999999999999999999999999999999999994
No 3
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.90 E-value=9.1e-24 Score=147.41 Aligned_cols=87 Identities=24% Similarity=0.456 Sum_probs=80.4
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKE 140 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~ 140 (157)
.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+....
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~ 80 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEA 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 47999999999999999999999999999999 99999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCc
Q 031573 141 NGKVENSE 148 (157)
Q Consensus 141 ~~~~~~~e 148 (157)
-....+..
T Consensus 81 ~~~~~~~~ 88 (92)
T 2crj_A 81 YKVCTESG 88 (92)
T ss_dssp HHCSSCCS
T ss_pred HHHHHhcC
Confidence 55544443
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.90 E-value=3.5e-24 Score=151.71 Aligned_cols=83 Identities=27% Similarity=0.494 Sum_probs=78.6
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
+++.+||++||||+||||||+++.|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|..|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hhcC
Q 031573 138 RKEN 141 (157)
Q Consensus 138 ~~~~ 141 (157)
...+
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 7554
No 5
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.90 E-value=4.6e-24 Score=143.84 Aligned_cols=76 Identities=28% Similarity=0.633 Sum_probs=73.7
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
++||+.|+||+||||||+.++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999999999999999999 99999999999999999999999999999999999999999974
No 6
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.89 E-value=2.1e-24 Score=151.97 Aligned_cols=81 Identities=32% Similarity=0.664 Sum_probs=77.3
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKS--MRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADY 135 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~--~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y 135 (157)
+++.+||+.|+||+||||||++++|..|+.+||++ + +.+|+++||++|+.|++++|++|.++|..++++|..+|.+|
T Consensus 14 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999 8 99999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 031573 136 IKRK 139 (157)
Q Consensus 136 ~~~~ 139 (157)
+.++
T Consensus 93 ~~~~ 96 (97)
T 2lhj_A 93 AQRK 96 (97)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9764
No 7
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.89 E-value=2.3e-24 Score=150.83 Aligned_cols=81 Identities=31% Similarity=0.550 Sum_probs=77.4
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
+++.+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|..
T Consensus 12 ~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~~ 90 (93)
T 1cg7_A 12 TRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYNA 90 (93)
T ss_dssp CCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hh
Q 031573 138 RK 139 (157)
Q Consensus 138 ~~ 139 (157)
.+
T Consensus 91 ~~ 92 (93)
T 1cg7_A 91 TL 92 (93)
T ss_dssp HT
T ss_pred cc
Confidence 65
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.7e-23 Score=143.35 Aligned_cols=82 Identities=30% Similarity=0.408 Sum_probs=77.6
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKE 140 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~ 140 (157)
..+|++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+.++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999 99999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 031573 141 NGK 143 (157)
Q Consensus 141 ~~~ 143 (157)
...
T Consensus 81 ~~~ 83 (92)
T 2cs1_A 81 QMS 83 (92)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 9
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.89 E-value=5e-23 Score=137.79 Aligned_cols=72 Identities=28% Similarity=0.589 Sum_probs=69.7
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 64 SKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 64 p~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
+++||||+|||||||+++|..|+.+||++ ++++|+++||++|+.|++ |++|.++|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999 999999999999999998 9999999999999999999999875
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=144.48 Aligned_cols=76 Identities=28% Similarity=0.406 Sum_probs=73.6
Q ss_pred ccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 60 EKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 60 ~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
..+||+.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+
T Consensus 11 ~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 11 SATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 467999999999999999999999999999999 9999999999999999999999999999999999999999886
No 11
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=5.2e-24 Score=148.22 Aligned_cols=75 Identities=27% Similarity=0.476 Sum_probs=70.6
Q ss_pred hcccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 031573 58 KHEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMA 133 (157)
Q Consensus 58 kk~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 133 (157)
+++.+||++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|+++|..++++|..+|.
T Consensus 12 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 12 EGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp CCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999 9999999999999999999999999999999999986654
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.88 E-value=2.4e-23 Score=139.99 Aligned_cols=74 Identities=26% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 63 dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
||+.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky 74 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 689999999999999999999999999999 99999999999999999999999999999999999999999975
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.88 E-value=1.2e-23 Score=143.87 Aligned_cols=78 Identities=35% Similarity=0.673 Sum_probs=74.1
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKS--MRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~--~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
++||++||||+||||||++++|..|+.+||++ + +.+|+++||++|+.|++++|++|.++|..++++|..+|.+|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDA-SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTT-CCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999999999998 5 59999999999999999999999999999999999999999865
Q ss_pred h
Q 031573 139 K 139 (157)
Q Consensus 139 ~ 139 (157)
.
T Consensus 81 ~ 81 (83)
T 1aab_A 81 K 81 (83)
T ss_dssp S
T ss_pred C
Confidence 3
No 14
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.87 E-value=1.6e-22 Score=135.28 Aligned_cols=72 Identities=35% Similarity=0.678 Sum_probs=69.5
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 64 SKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 64 p~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
|++||||+||||||++++|..|+.+||++ ++.+|+++||++|+.| ++|++|.++|..++++|..+|.+|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68999999999999999999999999999 9999999999999999 889999999999999999999999764
No 15
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=2.6e-22 Score=138.02 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 63 dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
.|+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 76 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 378999999999999999999999999999 9999999999999999999999999999999999999999998754
No 16
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=1.3e-22 Score=138.42 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=74.2
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
..+++.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+..-
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p 79 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGP 79 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCC
Confidence 35789999999999999999999999999999 9999999999999999999999999999999999999999998653
No 17
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.86 E-value=4e-22 Score=132.22 Aligned_cols=70 Identities=30% Similarity=0.693 Sum_probs=66.3
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 66 MPKKPPTAFFYFLEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADY 135 (157)
Q Consensus 66 ~PKrP~sAy~lF~~e~r~~ik~~~P~~~-~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y 135 (157)
+||||+|||+||++++|..|+.+||++. ++.+|++.||++|+.|++++|++|.++|..++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999982 259999999999999999999999999999999999999876
No 18
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.86 E-value=2.6e-22 Score=132.89 Aligned_cols=71 Identities=28% Similarity=0.494 Sum_probs=63.5
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
+.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 4689999999999999999999999999 9999999999999999999999999999999999999999985
No 19
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.86 E-value=1.2e-21 Score=148.35 Aligned_cols=78 Identities=27% Similarity=0.624 Sum_probs=75.2
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
++.+||+.||||+|||+|||.++|..|+.+||++ ++++|+++||++|+.|++++|++|.++|..++++|..+|.+|+.
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4467999999999999999999999999999999 99999999999999999999999999999999999999999985
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=141.68 Aligned_cols=78 Identities=21% Similarity=0.400 Sum_probs=71.0
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
.++++.||||+||||||++++|..|+.++|++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+...
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~P 101 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQP 101 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC--
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCC
Confidence 46788999999999999999999999999999 9999999999999999999999999999999999999999998753
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.86 E-value=6.7e-22 Score=134.21 Aligned_cols=74 Identities=28% Similarity=0.444 Sum_probs=71.0
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRP 74 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCC
Confidence 4799999999999999999999999999 9999999999999999999999999999999999999999998653
No 22
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.86 E-value=5.4e-22 Score=135.41 Aligned_cols=75 Identities=28% Similarity=0.470 Sum_probs=69.4
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 63 dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
.++.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+..
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 77 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYR 77 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 456899999999999999999999999999 999999999999999999999999999999999999999999864
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.4e-21 Score=134.50 Aligned_cols=74 Identities=24% Similarity=0.482 Sum_probs=70.9
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
+.|+||+||||||++++|..|..+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p 74 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCC
Confidence 3699999999999999999999999999 9999999999999999999999999999999999999999998653
No 24
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.85 E-value=3.3e-21 Score=134.84 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKENGK 143 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~~~ 143 (157)
+.|+||+|||+||++++|..++.++|+ ++.+|++.||++|+.|++++|++|+++|..++++|+.+|.+|+..+....
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~~ 79 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN 79 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 689999999999999999999999998 79999999999999999999999999999999999999999998877633
No 25
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.9e-21 Score=139.75 Aligned_cols=79 Identities=15% Similarity=0.398 Sum_probs=73.5
Q ss_pred cccCCCCCC-CCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031573 59 HEKLDSKMP-KKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIK 137 (157)
Q Consensus 59 k~~~dp~~P-KrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~ 137 (157)
++.+||+.| |||+|||+|||+++|..|+ ++ ++.+|++.||++|+.|++++|++|.++|..++++|..+|.+|..
T Consensus 9 kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 83 (108)
T 1v64_A 9 LKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLE 83 (108)
T ss_dssp SSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446799999 9999999999999999887 67 99999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q 031573 138 RKENG 142 (157)
Q Consensus 138 ~~~~~ 142 (157)
.+...
T Consensus 84 ~~~~~ 88 (108)
T 1v64_A 84 SLPEE 88 (108)
T ss_dssp HSCHH
T ss_pred hCCHH
Confidence 77543
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=147.99 Aligned_cols=79 Identities=27% Similarity=0.628 Sum_probs=75.9
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
++.+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|+..
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457999999999999999999999999999999 999999999999999999999999999999999999999999875
No 27
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=9.3e-22 Score=133.91 Aligned_cols=74 Identities=30% Similarity=0.461 Sum_probs=68.8
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 64 SKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 64 p~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.+.|..++++|..++++|+..
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~ 75 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYK 75 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC---
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeec
Confidence 46899999999999999999999999999 999999999999999999999999999999999999999999865
No 28
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.4e-21 Score=132.11 Aligned_cols=73 Identities=27% Similarity=0.435 Sum_probs=70.4
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
+.||||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++++|+..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~ 73 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYR 73 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeC
Confidence 4689999999999999999999999999 999999999999999999999999999999999999999999864
No 29
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=3.4e-20 Score=131.69 Aligned_cols=79 Identities=14% Similarity=0.293 Sum_probs=69.9
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 031573 62 LDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRKEN 141 (157)
Q Consensus 62 ~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~~~ 141 (157)
....+||||+||||||+++++. ...++++ ++.||++.||++|+.|++++|++|.++|..++++|..+|.+|...+..
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~ 80 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSP 80 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 3457899999999999999964 2345557 899999999999999999999999999999999999999999998866
Q ss_pred CC
Q 031573 142 GK 143 (157)
Q Consensus 142 ~~ 143 (157)
.+
T Consensus 81 ~~ 82 (101)
T 1v63_A 81 QD 82 (101)
T ss_dssp TH
T ss_pred HH
Confidence 54
No 30
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=123.77 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=62.3
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 65 KMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 65 ~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
|.||||+|||+||++++|..++..| +++|++.||++|+.|++++|.+|.++|..++++|..+|.+|.
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y~ 67 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWA 67 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSS-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998654 469999999999999999999999999999999999999983
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=143.27 Aligned_cols=80 Identities=33% Similarity=0.666 Sum_probs=75.9
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPD--IKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI 136 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~--~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~ 136 (157)
+.++||+.||||+|||+||++++|.+|+.+||+ + ++.+|+++||++|+.|++++|++|.++|..++++|..+|.+|.
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~ 86 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASV-NFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 86 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456899999999999999999999999999999 6 8999999999999999999999999999999999999999998
Q ss_pred hhh
Q 031573 137 KRK 139 (157)
Q Consensus 137 ~~~ 139 (157)
...
T Consensus 87 ~~~ 89 (173)
T 2yrq_A 87 PPK 89 (173)
T ss_dssp CCC
T ss_pred hhh
Confidence 643
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=128.45 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=59.7
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 031573 62 LDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKS-MRAIGKACGEKWKTMTYEEKVKYYDIATEK 124 (157)
Q Consensus 62 ~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~-~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~ 124 (157)
++++.||||+||||||++++|..|+.+||++ + +.+|+++||++|+.|++++|++|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999 8 999999999999999999999999999886
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=9.2e-20 Score=146.96 Aligned_cols=78 Identities=18% Similarity=0.388 Sum_probs=74.8
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
..+|++||||+|||+||++++|..|+.+||++ ++.+|+++||++|+.|++++|.+|+++|..++++|+.+|..|...+
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 113 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 113 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999 9999999999999999999999999999999999999999997654
No 34
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-20 Score=130.99 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=63.0
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKS--MRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~--~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~ 130 (157)
+..+||++||||+|||||||+++|..|+.+||++ + +++|+ ++|+.|++++|++|+++|..++++|..
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~ 83 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRI 83 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3356999999999999999999999999999999 8 99998 999999999999999999999999975
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=4.4e-19 Score=140.95 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=73.0
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031573 63 DSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKRK 139 (157)
Q Consensus 63 dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~~ 139 (157)
.|++||||+|||+||++++|..|+.+||++ ++.+|+++||++|+.|++++|.+|.++|..++++|..+|..|...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 81 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccC
Confidence 467999999999999999999999999999 9999999999999999999999999999999999999999998654
No 36
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=127.39 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=65.2
Q ss_pred cCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHH---HHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 031573 61 KLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKAC---GEKWKTMTYEEKVKYYDIATEKRAEFDRAM 132 (157)
Q Consensus 61 ~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~l---ge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 132 (157)
..+++.||||+||||||++++|.+|+.+ ++ ++.+|+++| |++|+.|++++|++|+++|.++++.|++++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999999999999998 78 999999999 999999999999999999999999999775
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=2.9e-19 Score=142.01 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
+..+||+.||||+|||||||+++|..|+.. +..+|++.||++|+.|++++|++|.++|..++++|..+|.+|+.+
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345799999999999999999999988654 456999999999999999999999999999999999999999998
Q ss_pred hcCCC
Q 031573 139 KENGK 143 (157)
Q Consensus 139 ~~~~~ 143 (157)
+.+..
T Consensus 182 ~~~~~ 186 (214)
T 3tq6_A 182 MIEVG 186 (214)
T ss_dssp HHHTT
T ss_pred Ccccc
Confidence 75543
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.74 E-value=4.3e-19 Score=143.03 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred cccCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 59 HEKLDSKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 59 k~~~dp~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
+..+||+.||||+|||||||+++|..|+.. +..+|++.||++|+.|++++|++|.++|..++++|+.+|.+|+.+
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCS-----SHHHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345799999999999999999999888655 455999999999999999999999999999999999999999998
Q ss_pred hcCCC
Q 031573 139 KENGK 143 (157)
Q Consensus 139 ~~~~~ 143 (157)
+.+..
T Consensus 214 ~~~~~ 218 (238)
T 3tmm_A 214 MIEVG 218 (238)
T ss_dssp HHHTT
T ss_pred Ccccc
Confidence 75443
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.69 E-value=4.1e-17 Score=123.27 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=71.1
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031573 64 SKMPKKPPTAFFYFLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYIKR 138 (157)
Q Consensus 64 p~~PKrP~sAy~lF~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Y~~~ 138 (157)
|+.|+||++|||||+.+.|..|..+||++ ++.+|+++||++|+.|++++|++|.++|..++++|..++..|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~ 75 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccc
Confidence 57899999999999999999999999999 999999999999999999999999999999999999999999754
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=75.67 E-value=3.2 Score=31.88 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCCCcHHHHHHH-HHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 031573 90 PDIKSMRAIGKA-CGEKWKTMTYEEKVKYYDIATE-KRAEFDRAMADYIKR 138 (157)
Q Consensus 90 P~~~~~~ei~k~-lge~Wk~ls~eeK~~y~~~A~~-~k~~y~~~~~~Y~~~ 138 (157)
|-. ++..|++. ||..|+.+++++++.|.+.... +..-|-..+..|..+
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~q 119 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRNQ 119 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 555 78888776 6899999999999999986665 566788889888854
No 41
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=66.24 E-value=2.1 Score=31.88 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 031573 114 KVKYYDIATEK 124 (157)
Q Consensus 114 K~~y~~~A~~~ 124 (157)
+..|...+..-
T Consensus 134 ~~~y~~~~r~~ 144 (169)
T 1ayz_A 134 KSQYVKRVKET 144 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 42
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=47.28 E-value=14 Score=27.31 Aligned_cols=19 Identities=0% Similarity=0.317 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 031573 122 TEKRAEFDRAMADYIKRKE 140 (157)
Q Consensus 122 ~~~k~~y~~~~~~Y~~~~~ 140 (157)
..++..|...+..|-..-.
T Consensus 131 ~~d~~~y~~~~r~~~~~~a 149 (169)
T 1ayz_A 131 KDHKSQYVKRVKETVEKSW 149 (169)
T ss_dssp HHCHHHHHHHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHc
Confidence 4567788887777765533
No 43
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=29.72 E-value=1.1e+02 Score=21.03 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 031573 77 FLEDFRKGFQEQNPDIKSMRAIGKACGEKWKTMTYEEKVKYYDIATEKRAEFDR 130 (157)
Q Consensus 77 F~~e~r~~ik~~~P~~~~~~ei~k~lge~Wk~ls~eeK~~y~~~A~~~k~~y~~ 130 (157)
|+.+.++-+ ..+++ +..++...|-+.|..+..-+=..|.-.+.-.+..|+.
T Consensus 29 iLaER~kpL--~id~l-~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI 79 (106)
T 1j1d_B 29 ILAERRKVL--AIDHL-NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEI 79 (106)
T ss_dssp HHHHHHHHH--HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHH
Confidence 556666555 34567 8889999999999998877777888888887777763
No 44
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=26.24 E-value=91 Score=20.08 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHH
Q 031573 78 LEDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKVKY 117 (157)
Q Consensus 78 ~~e~r~~ik~~~P~~~-~~~ei~k~lge~Wk~ls~eeK~~y 117 (157)
-+.+|..++.-||+.. ...+..+.|.+-|..|++..+..-
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~ 66 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREI 66 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 3456667788899973 245677888889999987655433
No 45
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=99 Score=20.17 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCC----cHHHHHHHHHHHhcCCChHHHHHHH
Q 031573 79 EDFRKGFQEQNPDIK----SMRAIGKACGEKWKTMTYEEKVKYY 118 (157)
Q Consensus 79 ~e~r~~ik~~~P~~~----~~~ei~k~lge~Wk~ls~eeK~~y~ 118 (157)
+.+|..++.-||+.. ...+....|.+-|..|++..+..-+
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 79 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455666777888863 1356778889999999877654433
No 46
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=23.85 E-value=17 Score=26.40 Aligned_cols=11 Identities=0% Similarity=0.181 Sum_probs=7.7
Q ss_pred cHHHHHHHHHH
Q 031573 94 SMRAIGKACGE 104 (157)
Q Consensus 94 ~~~ei~k~lge 104 (157)
+..+|...+..
T Consensus 75 ~~~Dl~~AV~~ 85 (140)
T 2byk_A 75 KYEHLSQVVNK 85 (140)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHhc
Confidence 56777777763
No 47
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=21.77 E-value=1.1e+02 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Q 031573 96 RAIGKACGEKWKTMTYEEKVKYYDIAT 122 (157)
Q Consensus 96 ~ei~k~lge~Wk~ls~eeK~~y~~~A~ 122 (157)
.+..+.-..++.-|++++|..|.+...
T Consensus 78 v~~~r~~~qmy~lLTPEQk~q~~~~~~ 104 (108)
T 3o39_A 78 LAHMETQNKIYNILTPEQKKQFNANFE 104 (108)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345666778999999999999987654
No 48
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=20.59 E-value=1.2e+02 Score=18.32 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHH
Q 031573 79 EDFRKGFQEQNPDIK-SMRAIGKACGEKWKTMTYEEKV 115 (157)
Q Consensus 79 ~e~r~~ik~~~P~~~-~~~ei~k~lge~Wk~ls~eeK~ 115 (157)
..+|..++.-||+.. ...+....|.+-|..|++..+.
T Consensus 27 ~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 27 KAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp HHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHH
Confidence 455666777899873 1246777888888888766544
Done!