BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031576
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 165 bits (418), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 109/141 (77%)
Query: 13 RLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEAR 72
+L+ + +I+ + D+P PGI+F+D+T+LL D KA+ ++D+ V+RY++ GI+ V G EAR
Sbjct: 14 QLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEAR 73
Query: 73 GFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVID 132
GF+FG +AL +G FVP+RKP KLP E ISE Y LEYGTD+LE+HV AI+PG++ LV+D
Sbjct: 74 GFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVD 133
Query: 133 DLVATGGTLSAAVRLLGRAHG 153
DL+ATGGT+ A V+L+ R G
Sbjct: 134 DLLATGGTIEATVKLIRRLGG 154
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 3/147 (2%)
Query: 10 GDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMG---ISVV 66
D LQ + + IR PDFP PG++F+DI+ +L D +F+ + + + I +
Sbjct: 2 ADSELQLVEQRIRSFPDFPTPGVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYI 61
Query: 67 AGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGE 126
AG+++RGF+FGPS+A +G V +RK KLPG + +Y LEYG LE+ A+EPG+
Sbjct: 62 AGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQ 121
Query: 127 RALVIDDLVATGGTLSAAVRLLGRAHG 153
R +V+DDL+ATGGT++AA LLGR
Sbjct: 122 RVVVVDDLLATGGTMNAACELLGRLQA 148
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 15 QGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFV----DRYRDMGISVVAGIE 70
Q + A+ P+FP GI+F+D + + F+ +D F + + ++ I + G+E
Sbjct: 8 QELKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLE 67
Query: 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALV 130
+RGF+FGP++ALA+G FVP+RK KLPGE Y EYG+D E+ AI G ++
Sbjct: 68 SRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVII 127
Query: 131 IDDLV 135
+DD++
Sbjct: 128 VDDII 132
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 21 IRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSI 80
I+ +PDFP GI F+D++ +L A Y+D+ I+ V GIE+RGF+ G +
Sbjct: 12 IKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIV 71
Query: 81 ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD-RLEMHVGAIEPGERALVIDDLVATGG 139
A ++G FV LRK KLPG+V + +EY +E+ + P + L+ DD++ATGG
Sbjct: 72 ANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGG 131
Query: 140 TLSAAVRLLGRA 151
TL AA+ L A
Sbjct: 132 TLLAAIELCETA 143
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 34 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 91
F D++++ + K D V+RYR M + + G +ARGF+FGP IA+ +G FV +
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 92 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 147
RK +K G +I SE Y EY + + + G+I R ++IDD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 148 L 148
+
Sbjct: 162 V 162
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 34 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 91
F D++++ + K D V RYR M + + G +ARGF+FGP IA+ + FV +
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 92 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 147
RK +K G +I SE Y EY + + + G+I G R ++IDD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 148 L 148
+
Sbjct: 161 V 161
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 111
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 112 TDRLE---MHVGAIEPGERALVIDDLVATGGTLSAAVRLL 148
++R++ + +++ G L+IDD + GGT++ + LL
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLL 219
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 111
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 112 TDRLE---MHVGAIEPGERALVIDDLVATGGTLSAAVRLL 148
++R++ + +++ G L+IDD + GGT++ + LL
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLL 219
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
Query: 45 KAFKDTVDIFVDRYRDMGIS--VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVI 102
+ DI ++ GIS V G+ P AL + N++P +I
Sbjct: 43 RLLSQVADILFQTAQNAGISFDTVCGV--------PYTALPLATVIC---STNQIP-MLI 90
Query: 103 SEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGR 150
+YGT RL G I PGE L+I+D+V +G ++ V +L +
Sbjct: 91 RRKETKDYGTKRLVE--GTINPGETCLIIEDVVTSGSSVLETVEVLQK 136
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 25/117 (21%)
Query: 55 VDRYRDMGISVVAGIEARGFVFG-----PSIALAIGAKFVPLRKPNKLPGEVIS------ 103
V+RYRD G+ V+A E + G P+ A ++ A+ R + PG ++S
Sbjct: 116 VERYRDSGLQVIAAFEHEFSLLGLPGERPAAAFSLQAQ----RAAGQFPGWLVSALAQAG 171
Query: 104 ---EAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157
E ++ EYG + E+ P + D V + R + R G R+C
Sbjct: 172 TEPEMFLPEYGQRQYEV---TCRPAQGVAAADRAV----NVREVTREVARQMGLRTC 221
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLG 149
G+I+ GER L I D V GGT + VR LG
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFLG 30
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 118 HVGAIEPGERALVIDDLVATGGTLSAAVRLLG 149
G+I+ GER L I D V GGT + VR LG
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLG 59
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 129 LVIDDLVATGGTLSAAVRLLGRAHGGRS 156
++DD+++TGGT++ AV+LL + G +
Sbjct: 209 FIVDDIISTGGTMATAVKLL-KEQGAKK 235
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 115 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLL 148
+EM V ++ G++ L++DD+++TGGT++ + LL
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 228
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 115 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLL 148
+EM V ++ G++ L++DD+++TGGT++ + LL
Sbjct: 192 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLL 226
>pdb|1A97|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|B Chain B, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|C Chain C, Xprtase From E. Coli Complexed With Gmp
pdb|1A97|D Chain D, Xprtase From E. Coli Complexed With Gmp
Length = 148
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLGRAH 152
GE +VIDDLV TGGT A + +AH
Sbjct: 79 GEGFIVIDDLVDTGGTAVAIREMYPKAH 106
>pdb|1A98|A Chain A, Xprtase From E. Coli Complexed With Gmp
pdb|1A98|B Chain B, Xprtase From E. Coli Complexed With Gmp
Length = 152
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLGRAH 152
GE +VIDDLV TGGT A + +AH
Sbjct: 81 GEGFIVIDDLVDTGGTAVAIREMYPKAH 108
>pdb|1NUL|A Chain A, Xprtase From E. Coli
pdb|1NUL|B Chain B, Xprtase From E. Coli
pdb|1A95|A Chain A, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|B Chain B, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|C Chain C, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A95|D Chain D, Xprtase From E. Coli Complexed With Mg:cprpp And Guanine
pdb|1A96|A Chain A, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|B Chain B, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|C Chain C, Xprtase From E. Coli With Bound Cprpp And Xanthine
pdb|1A96|D Chain D, Xprtase From E. Coli With Bound Cprpp And Xanthine
Length = 152
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 125 GERALVIDDLVATGGTLSAAVRLLGRAH 152
GE +VIDDLV TGGT A + +AH
Sbjct: 81 GEGFIVIDDLVDTGGTAVAIREMYPKAH 108
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLGRA 151
G E G++ +V++DL++TGG+ V L A
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREA 163
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAVRLLGRA 151
G + G+R ++IDDLV+TG T A+ L A
Sbjct: 360 GEYKKGDRVVIIDDLVSTGETKVEAIEKLRSA 391
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLL 148
VG IE G+ A++IDD++ T GT++ A L
Sbjct: 212 VGNIE-GKTAILIDDIIDTAGTITLAANAL 240
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 128 ALVIDDLVATGGTLSAAVRLLGRA 151
AL++D ++ATGG++ A + LL +A
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKA 149
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 75 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDL 134
V G ++ KF PL N+L VL + ++ G +P +RA +D+
Sbjct: 81 VMGRKTWDSLPPKFRPLS--NRL-------NVVLSRSATKEQLLAGIPDPIKRAEAANDV 131
Query: 135 VATGGTLSAAVRLL 148
VA G L A+R+L
Sbjct: 132 VAVNGGLEDALRML 145
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 75 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDL 134
V G ++ KF PL N+L VL + ++ G +P +RA +D+
Sbjct: 81 VMGRKTWDSLPPKFRPLS--NRL-------NVVLSRSATKEQLLAGIPDPIKRAEAANDV 131
Query: 135 VATGGTLSAAVRLL 148
VA G L A+R+L
Sbjct: 132 VAVNGGLEDALRML 145
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 120 GAIEPGERALVIDDLVATGGTLSAAV 145
G + G++ ++I+DL++TGG++ AV
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAV 169
>pdb|3LA4|A Chain A, Crystal Structure Of The First Plant Urease From Jack Bean
(Canavalia Ensiformis)
Length = 840
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 70 EARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERAL 129
E + +FG + + KF ++ N++PGE++ E L R + + G+R +
Sbjct: 106 ELQEALFGSLLPVPSLDKFAETKEDNRIPGEILCEDECLTLNIGRKAVILKVTSKGDRPI 165
Query: 130 VI 131
+
Sbjct: 166 QV 167
>pdb|2PRY|A Chain A, Apo Form Of S. Cerevisiae Orotate
Phosphoribosyltransferase
pdb|2PRZ|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|C Chain C, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PRZ|D Chain D, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Omp
pdb|2PS1|A Chain A, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
pdb|2PS1|B Chain B, S. Cerevisiae Orotate Phosphoribosyltransferase Complexed
With Orotic Acid And Prpp
Length = 226
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHG 153
VG+ +R L+IDD++ G ++ A ++ A G
Sbjct: 119 VGSALENKRILIIDDVMTAGTAINEAFEIISNAKG 153
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 119 VGAIEPGERALVIDDLVATGGTLSAAVRLL 148
+G +E G +++DD+V T GTL A ++L
Sbjct: 211 IGEVE-GRTCVIMDDMVDTAGTLCKAAQVL 239
>pdb|4GWH|A Chain A, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|B Chain B, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|C Chain C, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|D Chain D, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|E Chain E, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|F Chain F, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|G Chain G, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
pdb|4GWH|H Chain H, Crystal Structure Of Acyl-Coa Thioesterase Tesb From
Yersinia Pestis
Length = 288
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 87 KFVPLRKPNKLPGEVISEAYVLEYGTD------RLEMH-VGAIEPGERALVID 132
++V R K+P ++ Y+L Y +D L+ H +G +EPG + ID
Sbjct: 178 RYVWFRANGKMPDDLRVHQYLLGYASDFNFLPTALQPHGIGFLEPGMQIATID 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.144 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,644,609
Number of Sequences: 62578
Number of extensions: 185092
Number of successful extensions: 490
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 38
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)