Query 031576
Match_columns 157
No_of_seqs 214 out of 1292
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02293 adenine phosphoribosy 100.0 1.2E-33 2.7E-38 211.0 16.1 157 1-157 1-157 (187)
2 KOG1712 Adenine phosphoribosyl 100.0 2.1E-33 4.4E-38 200.4 11.8 147 10-156 4-153 (183)
3 TIGR01090 apt adenine phosphor 100.0 1.2E-29 2.6E-34 187.0 13.1 141 17-157 1-141 (169)
4 PRK02304 adenine phosphoribosy 100.0 1.8E-29 3.9E-34 187.0 14.0 144 14-157 3-146 (175)
5 COG0503 Apt Adenine/guanine ph 100.0 1.2E-28 2.5E-33 183.2 13.4 146 12-157 3-148 (179)
6 PRK09219 xanthine phosphoribos 99.9 2.9E-26 6.3E-31 171.5 13.0 141 12-157 3-149 (189)
7 TIGR01743 purR_Bsub pur operon 99.9 8.6E-26 1.9E-30 176.3 13.3 140 12-157 84-226 (268)
8 PRK09213 pur operon repressor; 99.9 8E-26 1.7E-30 176.9 12.6 140 12-157 86-228 (271)
9 TIGR01744 XPRTase xanthine pho 99.9 1.1E-25 2.3E-30 168.8 12.8 141 12-157 3-149 (191)
10 PRK12560 adenine phosphoribosy 99.9 3.2E-25 6.9E-30 165.8 13.7 138 15-157 4-146 (187)
11 PRK13810 orotate phosphoribosy 99.9 1.3E-24 2.8E-29 162.4 12.6 113 31-157 42-154 (187)
12 PRK08558 adenine phosphoribosy 99.9 6.5E-24 1.4E-28 164.0 13.2 123 34-157 83-208 (238)
13 PRK13809 orotate phosphoribosy 99.9 2.6E-23 5.7E-28 157.4 12.9 141 5-157 5-150 (206)
14 PRK07322 adenine phosphoribosy 99.9 2.7E-23 5.8E-28 154.4 11.4 140 17-157 8-152 (178)
15 PRK13812 orotate phosphoribosy 99.9 6.1E-22 1.3E-26 146.8 12.3 110 32-157 30-139 (176)
16 PRK02277 orotate phosphoribosy 99.9 1.3E-21 2.9E-26 147.8 13.1 122 28-157 49-172 (200)
17 PRK13811 orotate phosphoribosy 99.9 1.9E-21 4.1E-26 143.5 12.1 108 32-157 29-136 (170)
18 PRK05500 bifunctional orotidin 99.9 2.2E-21 4.7E-26 162.2 13.7 112 32-157 314-425 (477)
19 TIGR00336 pyrE orotate phospho 99.9 2E-21 4.3E-26 143.8 11.4 113 31-157 22-140 (173)
20 TIGR01367 pyrE_Therm orotate p 99.9 4.5E-21 9.7E-26 143.5 12.9 109 32-157 26-137 (187)
21 PRK06031 phosphoribosyltransfe 99.9 4.6E-21 9.9E-26 147.6 10.9 135 15-157 40-186 (233)
22 COG0461 PyrE Orotate phosphori 99.9 1.4E-20 3E-25 141.2 12.7 122 22-157 16-144 (201)
23 PRK00455 pyrE orotate phosphor 99.8 1.6E-20 3.5E-25 142.0 12.8 111 32-157 32-145 (202)
24 PF00156 Pribosyltran: Phospho 99.8 2.3E-20 4.9E-25 130.2 6.1 117 39-157 2-120 (125)
25 COG0856 Orotate phosphoribosyl 99.8 9.7E-18 2.1E-22 121.7 11.7 118 30-156 51-172 (203)
26 COG1040 ComFC Predicted amidop 99.7 4.7E-18 1E-22 130.5 7.4 115 41-156 88-215 (225)
27 TIGR00201 comF comF family pro 99.7 2.6E-17 5.6E-22 123.4 9.7 113 42-156 56-183 (190)
28 PRK09162 hypoxanthine-guanine 99.6 1.9E-15 4E-20 112.6 10.5 107 42-156 17-128 (181)
29 PRK09177 xanthine-guanine phos 99.6 2E-15 4.4E-20 109.9 10.5 99 41-150 9-109 (156)
30 PRK11595 DNA utilization prote 99.6 1.7E-15 3.6E-20 116.6 10.6 114 41-156 84-218 (227)
31 PRK08525 amidophosphoribosyltr 99.6 1.8E-15 3.9E-20 126.5 10.9 110 45-156 259-371 (445)
32 PRK07349 amidophosphoribosyltr 99.6 1.2E-15 2.6E-20 128.7 9.0 109 45-156 296-408 (500)
33 PRK06781 amidophosphoribosyltr 99.6 2.4E-15 5.2E-20 126.3 9.9 110 45-156 267-379 (471)
34 TIGR01203 HGPRTase hypoxanthin 99.6 9.3E-15 2E-19 107.5 11.2 108 42-156 3-115 (166)
35 PRK09246 amidophosphoribosyltr 99.6 3E-15 6.5E-20 126.8 9.6 112 44-156 275-389 (501)
36 TIGR01134 purF amidophosphorib 99.6 2.7E-15 5.8E-20 125.4 8.1 107 46-156 258-369 (442)
37 PLN02238 hypoxanthine phosphor 99.6 1.3E-14 2.9E-19 108.7 10.7 109 39-156 9-128 (189)
38 PRK07272 amidophosphoribosyltr 99.6 6.5E-15 1.4E-19 123.9 8.1 106 47-156 271-381 (484)
39 PRK07631 amidophosphoribosyltr 99.6 1.1E-14 2.4E-19 122.3 9.2 110 45-156 267-379 (475)
40 PLN02440 amidophosphoribosyltr 99.6 1.1E-14 2.3E-19 122.8 8.6 108 46-156 260-371 (479)
41 PRK07847 amidophosphoribosyltr 99.6 1.5E-14 3.2E-19 122.4 9.3 111 45-156 286-398 (510)
42 PRK06388 amidophosphoribosyltr 99.6 2.2E-14 4.7E-19 120.5 9.6 108 46-156 276-387 (474)
43 PRK05793 amidophosphoribosyltr 99.5 3E-14 6.6E-19 119.8 10.3 105 47-156 274-384 (469)
44 COG2236 Predicted phosphoribos 99.5 4.8E-14 1E-18 105.4 10.2 102 41-151 6-113 (192)
45 PRK15423 hypoxanthine phosphor 99.5 6E-14 1.3E-18 104.2 10.7 108 40-156 7-123 (178)
46 PRK09123 amidophosphoribosyltr 99.5 3.2E-14 7E-19 119.7 10.1 108 45-156 279-391 (479)
47 PRK08341 amidophosphoribosyltr 99.5 2.8E-14 6.2E-19 119.0 8.9 109 45-156 255-365 (442)
48 COG0462 PrsA Phosphoribosylpyr 99.5 5.8E-14 1.3E-18 111.4 9.9 102 37-156 143-245 (314)
49 PRK07199 phosphoribosylpyropho 99.5 6.7E-14 1.4E-18 111.8 10.0 83 62-156 160-242 (301)
50 PRK05205 bifunctional pyrimidi 99.5 1.1E-13 2.5E-18 102.5 10.0 108 40-154 5-125 (176)
51 PRK00934 ribose-phosphate pyro 99.5 9.9E-14 2.2E-18 110.0 9.3 80 63-156 155-235 (285)
52 PRK02269 ribose-phosphate pyro 99.5 1.9E-13 4E-18 110.0 11.0 83 63-156 166-248 (320)
53 PRK04923 ribose-phosphate pyro 99.5 4.4E-13 9.6E-18 107.7 9.9 81 63-156 167-248 (319)
54 PTZ00271 hypoxanthine-guanine 99.5 1E-12 2.2E-17 99.9 11.3 107 39-155 25-148 (211)
55 PRK01259 ribose-phosphate pyro 99.4 6.1E-13 1.3E-17 106.6 9.8 82 62-156 158-239 (309)
56 PTZ00149 hypoxanthine phosphor 99.4 7.6E-13 1.6E-17 102.3 9.7 110 37-156 53-181 (241)
57 PRK03092 ribose-phosphate pyro 99.4 1.1E-12 2.3E-17 105.0 10.7 95 50-156 137-232 (304)
58 COG0034 PurF Glutamine phospho 99.4 2E-13 4.4E-18 112.2 6.4 110 46-156 268-379 (470)
59 COG0634 Hpt Hypoxanthine-guani 99.4 2.5E-12 5.4E-17 94.0 11.4 105 40-156 10-124 (178)
60 PRK00553 ribose-phosphate pyro 99.4 1E-12 2.3E-17 106.1 10.3 80 64-156 170-249 (332)
61 PRK02458 ribose-phosphate pyro 99.4 2.7E-12 5.8E-17 103.4 10.5 79 64-156 171-249 (323)
62 PRK06827 phosphoribosylpyropho 99.4 3.3E-12 7.1E-17 104.7 10.8 87 62-156 207-295 (382)
63 TIGR01251 ribP_PPkin ribose-ph 99.4 2E-12 4.3E-17 103.6 9.3 82 62-156 159-241 (308)
64 PRK02812 ribose-phosphate pyro 99.3 1.4E-11 3.1E-16 99.4 9.4 101 37-156 160-261 (330)
65 PLN02369 ribose-phosphate pyro 99.3 2.3E-11 4.9E-16 97.3 10.1 79 65-156 154-233 (302)
66 PLN02297 ribose-phosphate pyro 99.2 4.3E-11 9.4E-16 96.3 9.5 77 64-156 185-261 (326)
67 KOG0572 Glutamine phosphoribos 99.2 2.6E-11 5.7E-16 97.8 6.3 108 47-156 277-387 (474)
68 PTZ00145 phosphoribosylpyropho 99.2 1.3E-10 2.9E-15 96.4 9.2 80 64-156 281-366 (439)
69 COG1926 Predicted phosphoribos 99.1 5.3E-10 1.1E-14 84.0 10.5 108 47-155 11-154 (220)
70 COG2065 PyrR Pyrimidine operon 99.1 4.3E-10 9.3E-15 81.3 8.7 105 41-152 6-123 (179)
71 KOG1448 Ribose-phosphate pyrop 99.1 3.2E-10 7E-15 89.0 6.8 103 37-156 142-245 (316)
72 PF14572 Pribosyl_synth: Phosp 99.1 5.2E-10 1.1E-14 83.0 7.0 91 64-156 5-114 (184)
73 PRK00129 upp uracil phosphorib 99.0 2.2E-09 4.8E-14 81.7 8.1 81 65-155 73-154 (209)
74 TIGR01091 upp uracil phosphori 98.9 5.1E-09 1.1E-13 79.6 8.0 81 65-155 71-152 (207)
75 KOG3367 Hypoxanthine-guanine p 98.9 1.3E-08 2.8E-13 74.3 8.8 114 33-156 28-156 (216)
76 PF15609 PRTase_2: Phosphoribo 98.4 2.1E-06 4.6E-11 64.0 7.7 112 41-152 30-148 (191)
77 PLN02541 uracil phosphoribosyl 97.9 4.9E-05 1.1E-09 59.2 7.6 32 123-154 155-186 (244)
78 PF14681 UPRTase: Uracil phosp 97.5 0.00045 9.8E-09 52.5 7.2 79 65-154 70-150 (207)
79 KOG1503 Phosphoribosylpyrophos 97.3 0.0018 3.8E-08 50.3 8.5 127 14-154 131-276 (354)
80 PF15610 PRTase_3: PRTase ComF 97.1 0.0082 1.8E-07 47.2 10.0 114 40-154 28-167 (274)
81 COG0035 Upp Uracil phosphoribo 96.8 0.0046 1E-07 46.9 6.4 78 65-154 73-154 (210)
82 KOG1017 Predicted uracil phosp 92.4 0.22 4.7E-06 37.8 4.1 32 123-154 187-218 (267)
83 KOG1377 Uridine 5'- monophosph 91.3 0.58 1.2E-05 36.6 5.3 107 31-144 62-173 (261)
84 PF13793 Pribosyltran_N: N-ter 89.3 4.4 9.6E-05 27.8 8.0 70 72-155 8-81 (116)
85 PRK02812 ribose-phosphate pyro 83.3 8.7 0.00019 31.3 8.0 78 64-155 21-102 (330)
86 PTZ00145 phosphoribosylpyropho 81.2 13 0.00027 31.7 8.4 79 64-156 119-201 (439)
87 COG3535 Uncharacterized conser 78.7 34 0.00074 28.1 9.7 100 42-154 76-185 (357)
88 TIGR01251 ribP_PPkin ribose-ph 78.4 11 0.00024 30.3 7.0 70 72-155 8-82 (308)
89 PRK04923 ribose-phosphate pyro 78.3 13 0.00029 30.1 7.5 71 71-155 13-87 (319)
90 PRK02269 ribose-phosphate pyro 77.9 21 0.00045 28.9 8.5 71 71-155 12-86 (320)
91 PRK01259 ribose-phosphate pyro 77.8 14 0.00031 29.7 7.5 70 72-155 8-81 (309)
92 PRK00934 ribose-phosphate pyro 77.6 16 0.00035 29.0 7.7 70 72-155 7-79 (285)
93 PLN02369 ribose-phosphate pyro 77.4 13 0.00029 29.8 7.2 67 75-155 2-72 (302)
94 PRK07199 phosphoribosylpyropho 77.2 21 0.00046 28.6 8.3 71 71-155 9-82 (301)
95 PRK03092 ribose-phosphate pyro 76.4 17 0.00037 29.2 7.6 66 76-155 1-70 (304)
96 PRK00553 ribose-phosphate pyro 75.9 22 0.00048 29.0 8.2 77 65-155 10-90 (332)
97 COG0462 PrsA Phosphoribosylpyr 66.6 21 0.00046 29.0 6.0 71 72-156 12-86 (314)
98 PRK02458 ribose-phosphate pyro 66.0 61 0.0013 26.3 8.6 77 65-155 10-90 (323)
99 cd01715 ETF_alpha The electron 65.2 20 0.00043 25.9 5.2 41 49-89 70-111 (168)
100 PLN02297 ribose-phosphate pyro 64.0 37 0.0008 27.7 7.0 79 65-155 17-98 (326)
101 cd01714 ETF_beta The electron 63.9 18 0.00039 27.1 4.9 41 49-89 95-139 (202)
102 PRK03359 putative electron tra 59.8 24 0.00051 27.8 5.0 41 49-89 99-143 (256)
103 cd01985 ETF The electron trans 58.0 26 0.00057 25.4 4.8 41 49-89 78-119 (181)
104 PRK12342 hypothetical protein; 56.5 28 0.00062 27.3 5.0 40 50-89 97-140 (254)
105 PRK04195 replication factor C 54.4 1.4E+02 0.003 25.5 11.2 110 37-153 13-131 (482)
106 PF01012 ETF: Electron transfe 53.9 15 0.00032 26.3 2.9 40 50-89 78-118 (164)
107 KOG0081 GTPase Rab27, small G 52.9 54 0.0012 24.4 5.5 31 61-91 123-161 (219)
108 PF11382 DUF3186: Protein of u 52.3 21 0.00046 28.7 3.8 35 123-157 81-115 (308)
109 KOG0741 AAA+-type ATPase [Post 51.9 26 0.00057 30.9 4.4 80 51-135 523-608 (744)
110 PRK01021 lpxB lipid-A-disaccha 51.3 40 0.00086 30.0 5.5 45 46-90 294-341 (608)
111 PRK06827 phosphoribosylpyropho 50.2 1.5E+02 0.0033 24.8 8.5 34 121-155 73-124 (382)
112 PRK08057 cobalt-precorrin-6x r 49.2 36 0.00078 26.6 4.5 36 59-94 187-224 (248)
113 TIGR00215 lpxB lipid-A-disacch 49.1 50 0.0011 27.2 5.6 39 53-91 80-119 (385)
114 cd06336 PBP1_ABC_ligand_bindin 48.3 75 0.0016 25.3 6.4 49 40-91 52-100 (347)
115 COG0371 GldA Glycerol dehydrog 47.1 39 0.00085 28.0 4.6 40 54-93 76-116 (360)
116 TIGR01426 MGT glycosyltransfer 45.0 77 0.0017 25.7 6.1 34 56-91 86-119 (392)
117 cd06328 PBP1_SBP_like_2 Peripl 44.8 99 0.0022 24.5 6.6 115 40-157 49-169 (333)
118 PRK13584 hisG ATP phosphoribos 44.6 11 0.00023 28.7 0.9 12 132-143 149-160 (204)
119 PF07728 AAA_5: AAA domain (dy 44.0 92 0.002 21.1 5.6 83 65-149 3-89 (139)
120 cd00158 RHOD Rhodanese Homolog 43.9 40 0.00087 20.5 3.5 29 123-154 48-76 (89)
121 smart00450 RHOD Rhodanese Homo 43.5 42 0.00092 20.7 3.6 30 122-154 53-82 (100)
122 PRK04940 hypothetical protein; 43.1 92 0.002 23.2 5.6 50 42-92 37-89 (180)
123 PF03681 UPF0150: Uncharacteri 42.2 8.7 0.00019 21.7 0.1 19 133-151 23-41 (48)
124 PRK01686 hisG ATP phosphoribos 41.9 13 0.00028 28.5 1.0 11 133-143 160-170 (215)
125 PF01634 HisG: ATP phosphoribo 41.9 13 0.00028 27.2 1.0 11 133-143 112-122 (163)
126 cd06388 PBP1_iGluR_AMPA_GluR4 41.7 89 0.0019 25.5 6.0 107 42-156 48-155 (371)
127 PF02684 LpxB: Lipid-A-disacch 41.5 63 0.0014 26.9 5.0 40 47-87 67-108 (373)
128 PF07726 AAA_3: ATPase family 41.0 1.1E+02 0.0023 21.7 5.4 75 75-152 14-90 (131)
129 cd01444 GlpE_ST GlpE sulfurtra 40.9 39 0.00084 21.3 3.1 29 123-154 54-82 (96)
130 cd01529 4RHOD_Repeats Member o 40.2 50 0.0011 21.0 3.5 29 123-154 54-82 (96)
131 cd06356 PBP1_Amide_Urea_BP_lik 39.9 1.9E+02 0.004 22.9 8.8 47 41-90 49-96 (334)
132 TIGR03492 conserved hypothetic 39.6 68 0.0015 26.6 5.0 26 62-90 93-118 (396)
133 COG1219 ClpX ATP-dependent pro 39.5 32 0.00069 28.5 2.9 27 65-91 101-128 (408)
134 KOG0743 AAA+-type ATPase [Post 39.3 96 0.0021 26.6 5.8 55 37-91 200-266 (457)
135 PF04748 Polysacc_deac_2: Dive 39.0 1.7E+02 0.0036 22.2 6.7 77 6-90 69-146 (213)
136 COG3150 Predicted esterase [Ge 38.8 66 0.0014 24.0 4.2 50 40-91 38-87 (191)
137 PRK13583 hisG ATP phosphoribos 38.7 14 0.00031 28.5 0.8 11 133-143 177-187 (228)
138 PF14502 HTH_41: Helix-turn-he 38.7 32 0.00069 19.9 2.0 20 136-155 18-37 (48)
139 TIGR00715 precor6x_red precorr 38.4 61 0.0013 25.4 4.3 37 58-94 193-232 (256)
140 cd03786 GT1_UDP-GlcNAc_2-Epime 38.3 1.1E+02 0.0024 24.2 5.9 43 49-91 75-118 (363)
141 PRK05329 anaerobic glycerol-3- 38.3 1.1E+02 0.0023 25.9 6.0 56 35-92 191-250 (422)
142 PF07355 GRDB: Glycine/sarcosi 38.2 80 0.0017 26.1 5.0 43 49-91 67-117 (349)
143 TIGR01133 murG undecaprenyldip 37.5 1.1E+02 0.0024 24.0 5.8 39 52-90 80-118 (348)
144 COG0040 HisG ATP phosphoribosy 37.3 16 0.00034 29.4 0.8 12 132-143 160-171 (290)
145 TIGR00236 wecB UDP-N-acetylglu 37.2 1.2E+02 0.0026 24.3 6.0 43 49-91 73-116 (365)
146 PF05728 UPF0227: Uncharacteri 36.8 1E+02 0.0022 22.9 5.1 49 42-92 40-88 (187)
147 cd01523 RHOD_Lact_B Member of 36.7 50 0.0011 21.1 3.1 29 123-154 59-87 (100)
148 PF07931 CPT: Chloramphenicol 36.5 26 0.00055 25.9 1.8 26 66-91 6-32 (174)
149 TIGR00070 hisG ATP phosphoribo 36.0 18 0.0004 27.0 1.0 13 131-143 152-164 (182)
150 PF09651 Cas_APE2256: CRISPR-a 35.6 1.1E+02 0.0024 21.4 4.9 47 46-92 72-124 (136)
151 PRK04596 minC septum formation 33.9 84 0.0018 24.7 4.4 78 9-90 29-106 (248)
152 PRK10618 phosphotransfer inter 33.7 97 0.0021 28.9 5.4 31 123-156 687-717 (894)
153 cd01577 IPMI_Swivel Aconatase- 32.8 40 0.00087 22.2 2.1 30 126-155 18-47 (91)
154 PF02350 Epimerase_2: UDP-N-ac 32.6 76 0.0016 25.9 4.2 48 44-91 49-97 (346)
155 TIGR03450 mycothiol_INO1 inosi 32.6 2E+02 0.0043 23.9 6.4 88 53-156 114-208 (351)
156 PLN02199 shikimate kinase 32.5 1E+02 0.0022 25.0 4.7 48 43-91 85-133 (303)
157 cd00404 Aconitase_swivel Aconi 32.5 55 0.0012 21.4 2.7 32 124-155 14-45 (88)
158 PF13528 Glyco_trans_1_3: Glyc 32.2 1.6E+02 0.0035 22.8 5.9 38 51-91 83-120 (318)
159 PRK14089 ipid-A-disaccharide s 32.0 1.3E+02 0.0028 24.7 5.4 38 50-90 66-107 (347)
160 PRK00109 Holliday junction res 31.7 1.5E+02 0.0033 20.8 5.1 41 52-92 44-96 (138)
161 PF13685 Fe-ADH_2: Iron-contai 31.7 45 0.00097 26.1 2.6 40 54-93 67-107 (250)
162 PRK13947 shikimate kinase; Pro 31.2 48 0.001 23.4 2.5 26 65-90 5-31 (171)
163 COG0588 GpmA Phosphoglycerate 31.1 59 0.0013 25.1 3.0 26 122-151 171-196 (230)
164 PF13189 Cytidylate_kin2: Cyti 31.1 35 0.00076 24.9 1.8 19 71-89 10-28 (179)
165 PF00862 Sucrose_synth: Sucros 30.9 71 0.0015 27.9 3.7 45 46-91 386-430 (550)
166 cd08177 MAR Maleylacetate redu 30.8 1.3E+02 0.0028 24.3 5.2 43 50-92 65-108 (337)
167 PRK00025 lpxB lipid-A-disaccha 30.8 1.6E+02 0.0035 23.6 5.8 38 54-91 77-115 (380)
168 cd06367 PBP1_iGluR_NMDA N-term 30.6 89 0.0019 25.0 4.2 46 42-91 46-96 (362)
169 cd01518 RHOD_YceA Member of th 30.0 93 0.002 19.9 3.6 29 123-154 59-87 (101)
170 cd08172 GlyDH-like1 Glycerol d 30.0 1.3E+02 0.0028 24.3 5.1 39 54-92 68-107 (347)
171 TIGR00150 HI0065_YjeE ATPase, 29.6 1.4E+02 0.0029 21.0 4.5 46 42-87 3-49 (133)
172 PF02571 CbiJ: Precorrin-6x re 29.6 1.1E+02 0.0024 23.8 4.5 37 58-94 190-228 (249)
173 PF02776 TPP_enzyme_N: Thiamin 29.3 83 0.0018 22.6 3.5 24 125-148 124-147 (172)
174 cd07039 TPP_PYR_POX Pyrimidine 29.3 1.2E+02 0.0026 21.8 4.3 24 126-149 123-146 (164)
175 PF00910 RNA_helicase: RNA hel 29.3 69 0.0015 21.1 2.9 27 124-150 48-79 (107)
176 cd08173 Gro1PDH Sn-glycerol-1- 28.6 1.4E+02 0.0031 24.0 5.1 41 52-92 68-109 (339)
177 COG2086 FixA Electron transfer 28.5 1.6E+02 0.0034 23.3 5.1 41 49-89 98-142 (260)
178 cd08171 GlyDH-like2 Glycerol d 28.1 1.5E+02 0.0032 24.1 5.1 41 52-92 68-109 (345)
179 PRK01641 leuD isopropylmalate 28.0 62 0.0013 24.5 2.7 33 123-155 65-97 (200)
180 PF06032 DUF917: Protein of un 27.6 1.2E+02 0.0027 25.0 4.6 46 46-92 76-123 (353)
181 cd03784 GT1_Gtf_like This fami 27.5 1.7E+02 0.0037 23.7 5.5 33 58-92 100-132 (401)
182 cd08550 GlyDH-like Glycerol_de 27.5 1.3E+02 0.0028 24.4 4.7 42 51-92 66-108 (349)
183 PRK09423 gldA glycerol dehydro 27.5 1.6E+02 0.0035 24.0 5.3 43 50-92 72-115 (366)
184 PF03192 DUF257: Pyrococcus pr 27.5 40 0.00086 25.7 1.6 18 127-144 40-57 (210)
185 cd06346 PBP1_ABC_ligand_bindin 27.4 1.6E+02 0.0034 23.0 5.1 48 40-90 48-97 (312)
186 PRK00726 murG undecaprenyldiph 27.4 2E+02 0.0043 22.8 5.8 39 53-91 82-120 (357)
187 PF13477 Glyco_trans_4_2: Glyc 27.3 1.5E+02 0.0032 19.8 4.4 39 53-91 65-105 (139)
188 cd08170 GlyDH Glycerol dehydro 27.1 1.7E+02 0.0037 23.7 5.3 42 51-92 66-108 (351)
189 cd01644 RT_pepA17 RT_pepA17: R 27.0 33 0.00072 26.0 1.1 23 127-149 137-159 (213)
190 PF04392 ABC_sub_bind: ABC tra 26.9 66 0.0014 25.2 2.8 50 36-92 37-88 (294)
191 TIGR00250 RNAse_H_YqgF RNAse H 26.6 2.2E+02 0.0048 19.7 5.3 41 52-92 38-90 (130)
192 PF02875 Mur_ligase_C: Mur lig 26.5 75 0.0016 20.1 2.6 26 126-151 12-37 (91)
193 PF03652 UPF0081: Uncharacteri 26.4 1.2E+02 0.0027 21.1 3.9 36 57-92 46-94 (135)
194 PLN02245 ATP phosphoribosyl tr 26.3 32 0.00069 29.0 0.9 11 133-143 242-252 (403)
195 TIGR00661 MJ1255 conserved hyp 25.8 1.8E+02 0.004 23.0 5.2 34 56-92 87-120 (321)
196 PRK05177 minC septum formation 25.3 92 0.002 24.1 3.3 59 7-70 26-84 (239)
197 PRK12446 undecaprenyldiphospho 25.3 2E+02 0.0043 23.3 5.4 32 58-91 87-120 (352)
198 TIGR01917 gly_red_sel_B glycin 25.3 1.9E+02 0.004 24.7 5.2 43 49-91 63-113 (431)
199 PRK11916 electron transfer fla 25.1 1.5E+02 0.0033 24.0 4.6 42 48-89 65-107 (312)
200 TIGR01918 various_sel_PB selen 25.1 1.9E+02 0.0041 24.7 5.2 43 49-91 63-113 (431)
201 cd07766 DHQ_Fe-ADH Dehydroquin 25.1 1.9E+02 0.0041 23.0 5.3 40 53-92 69-111 (332)
202 PF06068 TIP49: TIP49 C-termin 25.1 2.4E+02 0.0051 23.8 5.7 49 43-91 28-83 (398)
203 TIGR03568 NeuC_NnaA UDP-N-acet 24.9 2.3E+02 0.005 23.1 5.8 45 48-92 79-124 (365)
204 PF00391 PEP-utilizers: PEP-ut 24.7 88 0.0019 19.6 2.6 27 65-91 33-59 (80)
205 TIGR00171 leuD 3-isopropylmala 24.7 70 0.0015 24.0 2.4 33 123-155 67-99 (188)
206 cd03785 GT1_MurG MurG is an N- 24.7 2.1E+02 0.0046 22.4 5.4 38 53-90 80-117 (350)
207 PF13207 AAA_17: AAA domain; P 24.7 1.1E+02 0.0023 20.1 3.2 27 65-91 3-30 (121)
208 COG2099 CobK Precorrin-6x redu 24.5 1.6E+02 0.0035 23.3 4.4 35 60-94 194-231 (257)
209 cd06380 PBP1_iGluR_AMPA N-term 24.5 1.8E+02 0.0039 23.4 5.0 30 62-91 62-92 (382)
210 cd06339 PBP1_YraM_LppC_lipopro 24.4 3.6E+02 0.0078 21.3 7.7 107 44-157 45-157 (336)
211 PRK00843 egsA NAD(P)-dependent 23.9 1.9E+02 0.0042 23.5 5.1 41 52-92 77-118 (350)
212 PF06792 UPF0261: Uncharacteri 23.8 1.5E+02 0.0032 25.1 4.4 38 37-74 307-344 (403)
213 PTZ00428 60S ribosomal protein 23.8 69 0.0015 26.8 2.4 30 124-153 139-175 (381)
214 PRK00439 leuD 3-isopropylmalat 23.8 90 0.002 22.8 2.8 32 124-155 47-78 (163)
215 smart00155 PLDc Phospholipase 23.8 32 0.0007 16.9 0.3 14 125-138 6-20 (28)
216 PF14313 Soyouz_module: N-term 23.7 54 0.0012 19.8 1.3 27 131-157 9-35 (58)
217 PHA02774 E1; Provisional 23.6 5.4E+02 0.012 23.1 8.4 66 62-150 435-502 (613)
218 cd01520 RHOD_YbbB Member of th 23.4 1.4E+02 0.003 20.2 3.6 31 122-154 83-113 (128)
219 cd01524 RHOD_Pyr_redox Member 23.4 1.4E+02 0.003 18.6 3.4 28 123-153 49-76 (90)
220 KOG4622 Predicted nucleotide k 23.3 1.2E+02 0.0026 23.4 3.4 34 120-153 88-121 (291)
221 KOG0731 AAA+-type ATPase conta 23.0 56 0.0012 29.9 1.9 60 31-91 307-375 (774)
222 cd01519 RHOD_HSP67B2 Member of 23.0 1.6E+02 0.0034 18.8 3.7 28 124-154 65-92 (106)
223 COG2072 TrkA Predicted flavopr 22.8 86 0.0019 26.5 2.9 29 123-155 173-201 (443)
224 PRK02399 hypothetical protein; 22.8 1.6E+02 0.0034 25.0 4.3 35 40-74 311-345 (406)
225 cd02020 CMPK Cytidine monophos 22.8 84 0.0018 21.2 2.5 27 65-91 3-30 (147)
226 PRK04804 minC septum formation 22.6 1.1E+02 0.0025 23.3 3.3 75 8-88 23-97 (221)
227 TIGR02619 putative CRISPR-asso 22.4 3E+02 0.0066 19.7 6.0 28 65-92 105-137 (149)
228 KOG4203 Armadillo/beta-Catenin 22.3 78 0.0017 27.2 2.6 27 128-154 389-415 (473)
229 KOG0745 Putative ATP-dependent 22.2 1E+02 0.0022 26.7 3.1 28 65-92 230-258 (564)
230 cd06351 PBP1_iGluR_N_LIVBP_lik 22.1 1.2E+02 0.0027 23.3 3.6 48 42-92 46-94 (328)
231 PF03129 HGTP_anticodon: Antic 22.0 2.1E+02 0.0046 17.8 5.6 47 46-92 13-59 (94)
232 PRK15179 Vi polysaccharide bio 21.7 2.3E+02 0.005 25.7 5.5 42 50-91 388-429 (694)
233 COG0533 QRI7 Metal-dependent p 21.7 3.3E+02 0.0072 22.5 5.9 48 45-92 49-109 (342)
234 PF00595 PDZ: PDZ domain (Also 21.7 81 0.0017 19.3 2.0 33 122-154 43-75 (81)
235 PF04189 Gcd10p: Gcd10p family 21.5 1.2E+02 0.0025 24.5 3.3 30 121-152 198-227 (299)
236 PRK08154 anaerobic benzoate ca 21.4 2.4E+02 0.0052 22.5 5.1 27 65-91 137-164 (309)
237 PRK03482 phosphoglycerate muta 21.1 2.3E+02 0.0051 20.9 4.8 40 51-90 36-76 (215)
238 cd01528 RHOD_2 Member of the R 21.0 1.6E+02 0.0034 18.8 3.4 28 124-154 57-84 (101)
239 cd01965 Nitrogenase_MoFe_beta_ 21.0 2.3E+02 0.005 23.7 5.1 30 123-156 297-326 (428)
240 PF02153 PDH: Prephenate dehyd 20.9 2E+02 0.0043 22.2 4.4 35 122-156 120-154 (258)
241 PF13241 NAD_binding_7: Putati 20.8 1.2E+02 0.0026 19.8 2.8 29 123-155 5-33 (103)
242 PRK13946 shikimate kinase; Pro 20.5 90 0.002 22.6 2.3 27 65-91 14-41 (184)
243 cd08551 Fe-ADH iron-containing 20.4 2.6E+02 0.0056 22.8 5.2 32 53-84 71-103 (370)
244 COG0028 IlvB Thiamine pyrophos 20.4 1.7E+02 0.0036 25.7 4.2 42 51-93 5-47 (550)
245 PF01555 N6_N4_Mtase: DNA meth 20.4 83 0.0018 22.9 2.1 20 128-147 193-212 (231)
246 cd01075 NAD_bind_Leu_Phe_Val_D 20.2 55 0.0012 24.4 1.1 26 123-148 128-154 (200)
247 cd01532 4RHOD_Repeat_1 Member 20.2 1.4E+02 0.0029 18.9 2.9 28 124-154 49-78 (92)
248 PF06925 MGDG_synth: Monogalac 20.2 1.6E+02 0.0034 21.0 3.5 24 48-71 75-98 (169)
249 TIGR02640 gas_vesic_GvpN gas v 20.1 3.4E+02 0.0073 21.0 5.6 47 46-92 6-53 (262)
250 KOG1615 Phosphoserine phosphat 20.1 1.3E+02 0.0028 23.1 3.0 35 52-88 94-129 (227)
251 COG0552 FtsY Signal recognitio 20.1 5E+02 0.011 21.5 6.6 77 9-92 235-318 (340)
252 PF05209 MinC_N: Septum format 20.1 48 0.001 21.8 0.7 45 9-54 24-68 (99)
No 1
>PLN02293 adenine phosphoribosyltransferase
Probab=100.00 E-value=1.2e-33 Score=211.01 Aligned_cols=157 Identities=83% Similarity=1.270 Sum_probs=142.7
Q ss_pred CcccCCCCCCchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHH
Q 031576 1 MFAAENGLRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSI 80 (157)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~l 80 (157)
|++-++.=..|++++.|.+.+|++|+||.+|+.|+|+..++.+|+.++.+++.|++++.+.++|+|++++.+|+++|..+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~i~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~l 80 (187)
T PLN02293 1 MFAMENGDQGDPRLQGISSAIRVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPI 80 (187)
T ss_pred CCccccccCCChhHHHHHHhCccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHH
Confidence 77788888999999999999999999999999999999999999999999999999998778999999999999999999
Q ss_pred HHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 81 ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 81 a~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
|..+++|++++||.++.++...+..|..+++++.+++..+.+.+|++||||||++|||+|+.+++++|+++|+++++
T Consensus 81 A~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~ 157 (187)
T PLN02293 81 ALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVE 157 (187)
T ss_pred HHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEE
Confidence 99999999999998877766665556556777777777666668999999999999999999999999999998764
No 2
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=200.41 Aligned_cols=147 Identities=69% Similarity=1.113 Sum_probs=141.5
Q ss_pred CchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhc---cCCCEEEecCCCccccHHHHHHHhCC
Q 031576 10 GDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIGA 86 (157)
Q Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~---~~~d~Vv~v~~~G~~~a~~la~~l~~ 86 (157)
.++.++.++..||.+|+||.+|++|.|+..++.||..++.+...+++++++ .++|+|+|++.|||.|+..+|.++|+
T Consensus 4 ~d~~~~~ik~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~ 83 (183)
T KOG1712|consen 4 ADPRLKYIKTAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGA 83 (183)
T ss_pred ccHHHHHHHHhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCC
Confidence 467889999999999999999999999999999999999999999999987 57999999999999999999999999
Q ss_pred CEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 87 KFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 87 p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+++.+||.++.|+++.+.+|.++|+++.|+++.+.+.+|+||+||||++.||+|+.+|.++|.+.||+++
T Consensus 84 ~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vv 153 (183)
T KOG1712|consen 84 GFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVV 153 (183)
T ss_pred CeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 3
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.97 E-value=1.2e-29 Score=187.01 Aligned_cols=141 Identities=50% Similarity=0.906 Sum_probs=121.9
Q ss_pred HhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCC
Q 031576 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (157)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~ 96 (157)
|.++++..|+||.+++.|.|+..++.+|+.++.+++.|++++.+.++|+|+|++.||+++|..+|..+++|+..++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~ 80 (169)
T TIGR01090 1 LKQSIRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGK 80 (169)
T ss_pred ChhhcccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46788999999999999999999999999999999999999987789999999999999999999999999988887766
Q ss_pred CCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 97 LPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
.++...+..++.+++.+.+++......+|++|||||||+|||+|+.++++.|+++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~ 141 (169)
T TIGR01090 81 LPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVE 141 (169)
T ss_pred CCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEE
Confidence 5555555554445555556665444569999999999999999999999999999998763
No 4
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=187.01 Aligned_cols=144 Identities=55% Similarity=0.987 Sum_probs=125.7
Q ss_pred HHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEee
Q 031576 14 LQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRK 93 (157)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk 93 (157)
+++|.+..+..|.||.+++.|.|+.+++.+|+.++.+++.+++.+.+.++|+|+|++.+|+++|..+|..+++|+.++||
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk 82 (175)
T PRK02304 3 LEDLKSSIRTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRK 82 (175)
T ss_pred HHHHHHhhccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999998999999999999999999999999999987789999999999999999999999999999888
Q ss_pred cCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 94 PNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
.++.++...+..++.+++++.+.+..+.+.+|++|||||||+|||+|+.++++.|+++||++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~ 146 (175)
T PRK02304 83 PGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVG 146 (175)
T ss_pred CCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEE
Confidence 7655444444445445555667665545578999999999999999999999999999998764
No 5
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=183.18 Aligned_cols=146 Identities=44% Similarity=0.755 Sum_probs=133.3
Q ss_pred hhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
.-.+.|.+.++..|+||.+++.|.|....+.++..+......+++.+...++|.|++++.+||++|..+|.+||+|++.+
T Consensus 3 ~~~~~L~~~i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 3 ELMELLKDSIREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hHHHHHHHHHhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 35678999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred eecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 92 RKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 92 rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
||.++.+.......+..+++...+++..+.+.+|+|||||||++.||+|+.++.++++++|++++|
T Consensus 83 RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg 148 (179)
T COG0503 83 RKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVG 148 (179)
T ss_pred EecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEE
Confidence 999888777666666666666678888888889999999999999999999999999999999875
No 6
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.94 E-value=2.9e-26 Score=171.52 Aligned_cols=141 Identities=24% Similarity=0.345 Sum_probs=116.4
Q ss_pred hhHHHHhhhcccCCCCCCCCcEEEe-hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE
Q 031576 12 PRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~ 90 (157)
...+++.+.-+.+|+ ++.|.+ +.++..||+.++.+++.|++.+.+.++|+|+|++.+|+++|..+|.++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~ 78 (189)
T PRK09219 3 LLEERILKDGKVLSG----NILKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVF 78 (189)
T ss_pred HHHHHHhcCCEEcCC----CEEEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 467888888888888 866643 666679999999999999999988889999999999999999999999999999
Q ss_pred EeecCCCC--Cccchh---hhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 91 LRKPNKLP--GEVISE---AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 91 ~rk~~~~~--~~~~~~---~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+||..+.+ +...+. ++..+ +...+++..+.+.+|+|||||||++|||+|+.+++++++++||+++|
T Consensus 79 vRK~~k~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvg 149 (189)
T PRK09219 79 AKKKKSLTLTDDVYTATVYSFTKQ-VTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAG 149 (189)
T ss_pred EEECCCCCCCCceEEEEEeeeccC-ceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEE
Confidence 99876553 332221 11111 23457777777779999999999999999999999999999999875
No 7
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.94 E-value=8.6e-26 Score=176.31 Aligned_cols=140 Identities=21% Similarity=0.390 Sum_probs=117.1
Q ss_pred hhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
..++.|.+.-|..|+ ++ ..+.+++.||+.++.+++.++..+.+.++|+|++++.+|+++|..+|.+|++|++++
T Consensus 84 ~l~~~l~~~~rilpg----g~--~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 84 ELCQSLSEPERILPG----GY--LYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred HHHHHHHHCCCcccC----Ce--EEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 345566666666665 64 447889999999999999999999888899999999999999999999999999999
Q ss_pred eecCCC-CCccchhhhhhhccc--cceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 92 RKPNKL-PGEVISEAYVLEYGT--DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 92 rk~~~~-~~~~~~~~~~~~~~~--~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
||.++. ++++.+..|...... ..+++.++.+.+|+|||||||+++||+|+.+++++++++||+++|
T Consensus 158 RK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvG 226 (268)
T TIGR01743 158 RKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAG 226 (268)
T ss_pred EECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEE
Confidence 998765 666666666432221 257777777779999999999999999999999999999999876
No 8
>PRK09213 pur operon repressor; Provisional
Probab=99.93 E-value=8e-26 Score=176.86 Aligned_cols=140 Identities=22% Similarity=0.417 Sum_probs=116.7
Q ss_pred hhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 12 PRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
.++++|.+..|..|+ + |.++.+++.+|+.++.+++.+++.+.+.++|+|++++.+|+++|..+|..|++|++++
T Consensus 86 ~L~~~L~~~~rilpG----g--f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 86 ELCERLSEPDRILPG----G--YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred HHHHHHHhCCccCCC----C--eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 345666666666665 5 4457789999999999999999999887899999999999999999999999999999
Q ss_pred eecCCC-CCccchhhhhhhcc--ccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 92 RKPNKL-PGEVISEAYVLEYG--TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 92 rk~~~~-~~~~~~~~~~~~~~--~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
||.++. ++++.+..|..... ...+++.++.+.+|++||||||+++||+|+.+++++++++||+++|
T Consensus 160 RK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvG 228 (271)
T PRK09213 160 RRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVG 228 (271)
T ss_pred EECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEE
Confidence 997764 66666666533221 1257777777789999999999999999999999999999999876
No 9
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.93 E-value=1.1e-25 Score=168.78 Aligned_cols=141 Identities=24% Similarity=0.308 Sum_probs=115.0
Q ss_pred hhHHHHhhhcccCCCCCCCCcEEEe-hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE
Q 031576 12 PRLQGISKAIRVVPDFPIPGIMFQD-ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~ 90 (157)
.++++|.+.-|.+|+ ++.|.| ..+...||+.++.+++.|++++.+.++|+|++++.+||++|..+|.++++|+++
T Consensus 3 ~l~~~~~~~~~~~~~----~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~ 78 (191)
T TIGR01744 3 LLKQKIKEEGVVLPG----GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVF 78 (191)
T ss_pred HHHHHHhcCCEEcCC----CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEE
Confidence 567888888888887 766655 334457999999999999999988789999999999999999999999999999
Q ss_pred EeecCCCCC--cc---chhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 91 LRKPNKLPG--EV---ISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 91 ~rk~~~~~~--~~---~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+||.++.+. .. ...+|.. ++...++++.+.+.+|+|||||||++|||+|+.+++++++++||+++|
T Consensus 79 vRK~~k~~~~~~~~~~~~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvg 149 (191)
T TIGR01744 79 ARKKKPLTLTDNLLTASVHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAG 149 (191)
T ss_pred EEeCCCCCCCCcceEEEEEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEE
Confidence 999765432 11 1122222 334467776666679999999999999999999999999999999875
No 10
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=3.2e-25 Score=165.83 Aligned_cols=138 Identities=27% Similarity=0.337 Sum_probs=111.4
Q ss_pred HHHhhhcccCCCCCCCCc--EEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 15 QGISKAIRVVPDFPIPGI--MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~--~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
+.+...+|++|+||.++. .|.|+.+++. |+.++.+++.|++.+ +.++|+|+|++.+|+++|..+|..+++|+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 4 KNLYKNARVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHhhCCccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 446678999999999997 8999999999 999999999999988 668999999999999999999999999999988
Q ss_pred ecCCCCCccchhhh-hhhcccccee--eecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 93 KPNKLPGEVISEAY-VLEYGTDRLE--MHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 93 k~~~~~~~~~~~~~-~~~~~~~~~~--i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
|.+..... ..+ ..++++..++ +..+...+|++||||||++|||+|+.+++++++++||+++|
T Consensus 82 k~~~~~~~---~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~ 146 (187)
T PRK12560 82 WYPYSLSE---LNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSD 146 (187)
T ss_pred cCCCcccc---eeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEE
Confidence 75432111 111 0122222222 22234568999999999999999999999999999999864
No 11
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.3e-24 Score=162.41 Aligned_cols=113 Identities=26% Similarity=0.446 Sum_probs=100.3
Q ss_pred CcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhc
Q 031576 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 110 (157)
Q Consensus 31 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~ 110 (157)
+++|+|+..++.+|+.++.+++.|++.+.+.++|.|+|++.+|+++|..+|..+|+|++++||..+ +|
T Consensus 42 s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k------------~~ 109 (187)
T PRK13810 42 SKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVK------------DY 109 (187)
T ss_pred CCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCC------------cc
Confidence 479999999999999999999999999988789999999999999999999999999999998752 33
Q ss_pred cccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 111 GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 111 ~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+...+. .+.+.+|++|+|||||+|||+|+.+++++++++|++++|
T Consensus 110 g~~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~ 154 (187)
T PRK13810 110 GTGSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKY 154 (187)
T ss_pred CCCceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEE
Confidence 433332 245568999999999999999999999999999999875
No 12
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.91 E-value=6.5e-24 Score=164.04 Aligned_cols=123 Identities=21% Similarity=0.346 Sum_probs=101.4
Q ss_pred EEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCC-Cccchhhhhhh-cc
Q 031576 34 FQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLE-YG 111 (157)
Q Consensus 34 ~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~-~~~~~~~~~~~-~~ 111 (157)
|+|+..++.||+.++.+++.+++.+.+.++|+|++++.+|+++|..+|..||+|++++||.++.. +.+.+ .|... .+
T Consensus 83 y~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~-~y~s~s~~ 161 (238)
T PRK08558 83 YVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYE-EYQRLASG 161 (238)
T ss_pred EEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEE-EeeccCCC
Confidence 88999999999999999999999998778999999999999999999999999999998765322 22222 22111 11
Q ss_pred -ccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 112 -TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 112 -~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
...+++....+.+|++||||||+++||+|+.+++++++++||+++|
T Consensus 162 ~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvg 208 (238)
T PRK08558 162 IEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVG 208 (238)
T ss_pred ceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEE
Confidence 1235555556679999999999999999999999999999999876
No 13
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.90 E-value=2.6e-23 Score=157.44 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=109.0
Q ss_pred CCCCCCchhHHHHhhh-cccCCCCCC-C---CcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHH
Q 031576 5 ENGLRGDPRLQGISKA-IRVVPDFPI-P---GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPS 79 (157)
Q Consensus 5 ~~~~~~~~~~~~l~~~-~~~~~~~~~-~---~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~ 79 (157)
|.++..+...+.|.+. .-.+..|.- + +.+|+|+..++.+|+.++.+++.|++.+...++|+|+|++.+|+++|..
T Consensus 5 ~~~~~~~~l~~~l~~~gal~~g~F~L~SG~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~ 84 (206)
T PRK13809 5 EDAKLRDQAVAILYQIGAIKFGKFILASGEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATS 84 (206)
T ss_pred hhhhhHHHHHHHHHHcCCEEECCEEECCcCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHH
Confidence 3344444444444443 112234432 2 3799999999999999999999999998766889999999999999999
Q ss_pred HHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 80 IALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 80 la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+|..+++|+.+.||..+.++. .+.+++ .+.+.+|++|+|||||+|||+|+.++++.|+++|+++++
T Consensus 85 vA~~l~~p~~~~RK~~K~~G~-----------~~~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~ 150 (206)
T PRK13809 85 ISLKYNIPMVLRRKELKNVDP-----------SDAIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVRE 150 (206)
T ss_pred HHHHhCCCEEEEeCCCCCCCC-----------cCEEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEE
Confidence 999999999999986643321 112333 234568999999999999999999999999999998864
No 14
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.90 E-value=2.7e-23 Score=154.42 Aligned_cols=140 Identities=24% Similarity=0.350 Sum_probs=107.7
Q ss_pred HhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCC
Q 031576 17 ISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK 96 (157)
Q Consensus 17 l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~ 96 (157)
+.+..|++|+|+.++..+++...++.+|..++.+++.|++.+.. ++|+|++++.+|+++|..+|+.+++|+..+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~ 86 (178)
T PRK07322 8 VGGVTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRK 86 (178)
T ss_pred EcCEEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCC
Confidence 45678999999998777889999999999999999999999875 78999999999999999999999999988776443
Q ss_pred C-C-Cccchhhhhhhcccc-ceeeecC--CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 97 L-P-GEVISEAYVLEYGTD-RLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 97 ~-~-~~~~~~~~~~~~~~~-~~~i~~~--~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
. . ....+..+....+.. .+.+... ...+|++||||||++|||+|+.+++++|+++||++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~ 152 (178)
T PRK07322 87 PYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVA 152 (178)
T ss_pred CCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEE
Confidence 1 1 111111100011111 2222111 1247999999999999999999999999999999764
No 15
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=6.1e-22 Score=146.81 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=94.8
Q ss_pred cEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcc
Q 031576 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYG 111 (157)
Q Consensus 32 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~ 111 (157)
.+|+|+..+..+|+.++.+++.|++.+.+ .|+|+|++.+|+++|..+|..+++|+++.||.++ +|+
T Consensus 30 ~~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k------------~yg 95 (176)
T PRK13812 30 EYYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAK------------EYG 95 (176)
T ss_pred CEEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCC------------cCC
Confidence 69999999999999999999999998854 3899999999999999999999999999998652 223
Q ss_pred ccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 112 TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 112 ~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
..... .+.+.+|++|+||||++|||+|+.++++.|+++|++++|
T Consensus 96 ~~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~ 139 (176)
T PRK13812 96 TGNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNR 139 (176)
T ss_pred CCCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEE
Confidence 32221 134558999999999999999999999999999999875
No 16
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.88 E-value=1.3e-21 Score=147.77 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=95.6
Q ss_pred CCCCcEEEehHhhhcCHHHHHHHHHHHHHHhh--ccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhh
Q 031576 28 PIPGIMFQDITTLLLDHKAFKDTVDIFVDRYR--DMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 105 (157)
Q Consensus 28 ~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~--~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~ 105 (157)
|.++.+|+|+..+..+|+.++.+++.|++.+. ..++|+|+|++.+|+++|..+|..+++|+...+++....+..
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~---- 124 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEG---- 124 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEeccccccccc----
Confidence 55678999999999999999999999999874 357899999999999999999999999997776443110000
Q ss_pred hhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 106 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 106 ~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
......+.. .....+|++|||||||+|||+|+.++++.|+++|+++++
T Consensus 125 ---~~~~~~~~~-~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~ 172 (200)
T PRK02277 125 ---EKKTGSFSR-NFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVA 172 (200)
T ss_pred ---ccccceecc-ccccCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEE
Confidence 000111110 012358999999999999999999999999999998763
No 17
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.87 E-value=1.9e-21 Score=143.49 Aligned_cols=108 Identities=26% Similarity=0.409 Sum_probs=92.1
Q ss_pred cEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcc
Q 031576 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYG 111 (157)
Q Consensus 32 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~ 111 (157)
.+|+|+..++.+|+.++.+++.|++.+ ++|+|++++.+|+++|..+|..+|+|++++||.++. ++
T Consensus 29 ~~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~------------~g 93 (170)
T PRK13811 29 RYYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKD------------HG 93 (170)
T ss_pred CEEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCC------------CC
Confidence 588999999999999999999987653 689999999999999999999999999999986431 22
Q ss_pred ccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 112 TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 112 ~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
...+.. +. .+|++|+||||++|||+|+.+++++|+++||+++|
T Consensus 94 ~~~~~~--g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~ 136 (170)
T PRK13811 94 KAGLII--GD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDD 136 (170)
T ss_pred CcceEE--cc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEE
Confidence 222222 23 48999999999999999999999999999999874
No 18
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.87 E-value=2.2e-21 Score=162.22 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=99.9
Q ss_pred cEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcc
Q 031576 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYG 111 (157)
Q Consensus 32 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~ 111 (157)
.+|+|+..++.+|+.++.+++.+++.+...++|.|+|++.+|+++|..+|..+++|++++||+.+ +|+
T Consensus 314 ~~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K------------~~G 381 (477)
T PRK05500 314 SYYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVK------------AHG 381 (477)
T ss_pred CEEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcC------------ccC
Confidence 69999999999999999999999999987789999999999999999999999999999998753 334
Q ss_pred ccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 112 TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 112 ~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+..+ ..+.+.+|++|||||||+|||+|+.++++.|+++|++|+|
T Consensus 382 ~~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~ 425 (477)
T PRK05500 382 TRRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRD 425 (477)
T ss_pred CCce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEE
Confidence 4333 2345679999999999999999999999999999999875
No 19
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.87 E-value=2e-21 Score=143.75 Aligned_cols=113 Identities=17% Similarity=0.249 Sum_probs=96.3
Q ss_pred CcEEEehHhhhcCHHHHHHHHHHHHHHhhc-cCCCEEEecCCCccccHHHHHHHhCCC-----EEEEeecCCCCCccchh
Q 031576 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRD-MGISVVAGIEARGFVFGPSIALAIGAK-----FVPLRKPNKLPGEVISE 104 (157)
Q Consensus 31 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~-~~~d~Vv~v~~~G~~~a~~la~~l~~p-----~~~~rk~~~~~~~~~~~ 104 (157)
+.+|+|+..++.+|+..+.+++.+++.+.+ .++|+|+|++.+|+++|..+|..+++| +.+.||..+.
T Consensus 22 s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~------- 94 (173)
T TIGR00336 22 SPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKD------- 94 (173)
T ss_pred CCEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCccc-------
Confidence 468999999999999999999999999876 589999999999999999999999999 8888875421
Q ss_pred hhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 105 AYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 105 ~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
++...+. .+...+|++||||||+++||+|+.++++.|+++|++++|
T Consensus 95 -----~g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~ 140 (173)
T TIGR00336 95 -----HGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAG 140 (173)
T ss_pred -----CCCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEE
Confidence 1222111 134568999999999999999999999999999999875
No 20
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.86 E-value=4.5e-21 Score=143.45 Aligned_cols=109 Identities=22% Similarity=0.394 Sum_probs=93.7
Q ss_pred cEEEehHhhhcCHHHHHHHHHHHHHHhhcc--CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhh
Q 031576 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 109 (157)
Q Consensus 32 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~ 109 (157)
.+|+|+..++.+|+.++.+++.|++++... ++|+|++++.+|+++|..+|..+++|+++.++.+.
T Consensus 26 ~~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~~------------- 92 (187)
T TIGR01367 26 PYFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREGG------------- 92 (187)
T ss_pred CeeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeCC-------------
Confidence 689999999999999999999999999764 78999999999999999999999999988776431
Q ss_pred ccccceeeecC-CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 110 YGTDRLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 110 ~~~~~~~i~~~-~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
.+.+..+ .+.+|++|||||||++||+|+.++++.|+++|+++++
T Consensus 93 ----~~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~ 137 (187)
T TIGR01367 93 ----GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVG 137 (187)
T ss_pred ----cEEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEE
Confidence 1111111 2358999999999999999999999999999999763
No 21
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.85 E-value=4.6e-21 Score=147.55 Aligned_cols=135 Identities=22% Similarity=0.379 Sum_probs=97.7
Q ss_pred HHHhhhcccCCCCCCCCcEEEehHhhhcCH---HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCC-EEE
Q 031576 15 QGISKAIRVVPDFPIPGIMFQDITTLLLDH---KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAK-FVP 90 (157)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~---~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p-~~~ 90 (157)
..|...+|.+|+++ .|+..++.++ +.++.+++.|++++...++|+|+|++.+|+++|..+|++||++ ++.
T Consensus 40 ~~l~~~~r~~~~~~------~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vp 113 (233)
T PRK06031 40 RQLLLPIRGLPDGD------RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVP 113 (233)
T ss_pred CEeccCcEECCCCC------CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceE
Confidence 34566778888755 4688888887 5567799999999877789999999999999999999999974 344
Q ss_pred EeecCCCC------CccchhhhhhhccccceeeecC--CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 91 LRKPNKLP------GEVISEAYVLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 91 ~rk~~~~~------~~~~~~~~~~~~~~~~~~i~~~--~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
+++.++.. ....+.. .....+.+.+... ...+|+||||||||++||+|+.+++++|+++|++++|
T Consensus 114 l~~~rK~~~~~~l~~~~~sit--t~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvg 186 (233)
T PRK06031 114 LGTSRKFWYRDELSVPLSSIT--TPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAG 186 (233)
T ss_pred EEEccccccccccccceeeee--ccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEE
Confidence 44322210 0001100 0011123444332 2358999999999999999999999999999999875
No 22
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.85 E-value=1.4e-20 Score=141.18 Aligned_cols=122 Identities=24% Similarity=0.350 Sum_probs=100.1
Q ss_pred ccCCCCCCC-C---cEEEehHhhhcCHHHHHHHHHHHHHHhhcc-CCCEEEecCCCccccHHHHHHHhC-CC-EEEEeec
Q 031576 22 RVVPDFPIP-G---IMFQDITTLLLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIG-AK-FVPLRKP 94 (157)
Q Consensus 22 ~~~~~~~~~-~---~~~~d~~~l~~~~~~~~~l~~~la~~~~~~-~~d~Vv~v~~~G~~~a~~la~~l~-~p-~~~~rk~ 94 (157)
-.+++|+.+ | .+|+|+..+..+|+..+.++..++...++. ++|+|+|++.+|+|+|..+|.+++ .| +++.||+
T Consensus 16 ~~fG~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke 95 (201)
T COG0461 16 LKFGEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKE 95 (201)
T ss_pred eecCceeecCCCcCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEece
Confidence 345677653 3 799999999999999999999999988774 899999999999999999999993 22 7778876
Q ss_pred CCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 95 NKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
. ++||..... .+...+|++|+|||||+|||+++.+++++|+++|+.|+|
T Consensus 96 ~------------K~hG~~~~i--eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~g 144 (201)
T COG0461 96 A------------KDHGTGGLI--EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVG 144 (201)
T ss_pred e------------ccCCCccee--EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEE
Confidence 4 344543221 133348999999999999999999999999999999875
No 23
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.85 E-value=1.6e-20 Score=142.02 Aligned_cols=111 Identities=26% Similarity=0.335 Sum_probs=95.2
Q ss_pred cEEEehHhhhcCHHHHHHHHHHHHHHhhcc--CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhh
Q 031576 32 IMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 109 (157)
Q Consensus 32 ~~~~d~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~ 109 (157)
..|+|+..++.+|+.++.+++.|++++.+. ++|+|+|++.+|+++|..+|..+++|+++.+|..+.
T Consensus 32 ~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~------------ 99 (202)
T PRK00455 32 PYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKD------------ 99 (202)
T ss_pred CeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCC------------
Confidence 689999999999999999999999999765 889999999999999999999999999999875421
Q ss_pred cccc-ceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 110 YGTD-RLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 110 ~~~~-~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
++.. .+. ....+|++||||||+++||+|+.++++.|+++|+++++
T Consensus 100 ~g~~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~ 145 (202)
T PRK00455 100 HGEGGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVG 145 (202)
T ss_pred CCCCceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEE
Confidence 1211 121 22347999999999999999999999999999998864
No 24
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.82 E-value=2.3e-20 Score=130.18 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=85.9
Q ss_pred hhhcCHHHHHHHHHHHHHHhhcc--CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcccccee
Q 031576 39 TLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (157)
Q Consensus 39 ~l~~~~~~~~~l~~~la~~~~~~--~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (157)
+++.+++.+..+++.|++++.+. ++|.|+|++++|+++|..+|..++.|+....+......... .. ..........
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSD-KT-SREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEE-EE-EEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccch-hh-hhccCceEEe
Confidence 35678999999999999998764 56779999999999999999999999877654321000000 00 0000111122
Q ss_pred eecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 117 i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
.......+|++||||||+++||+|+.++++.|+++|+++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~ 120 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVG 120 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEE
Confidence 22234569999999999999999999999999999998763
No 25
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.76 E-value=9.7e-18 Score=121.70 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCcEEEehHhhhcCHHHHHHHHHHHHHH-hhc--cCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhh
Q 031576 30 PGIMFQDITTLLLDHKAFKDTVDIFVDR-YRD--MGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAY 106 (157)
Q Consensus 30 ~~~~~~d~~~l~~~~~~~~~l~~~la~~-~~~--~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~ 106 (157)
|-..|+||.++-..+.-++.++..|++. ++. .++|+|+|++..|+|+|+++|..||..+...+.+.... .
T Consensus 51 p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~-----d-- 123 (203)
T COG0856 51 PVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRK-----D-- 123 (203)
T ss_pred CcceEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccc-----c--
Confidence 3468999999999999999999999983 332 47899999999999999999999999997654222100 0
Q ss_pred hhhccc-cceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 107 VLEYGT-DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 107 ~~~~~~-~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.+.+. +.+. ....-..||+|+||||++|||+|+.++++.|++.|++.+
T Consensus 124 -e~~~~~G~iS-~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv 172 (203)
T COG0856 124 -EGAGKGGSIS-SNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPV 172 (203)
T ss_pred -ccCCcCceee-cccccccCceEEEEecccccChhHHHHHHHHHHcCCCcE
Confidence 00011 1122 112335899999999999999999999999999999754
No 26
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.74 E-value=4.7e-18 Score=130.49 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=85.7
Q ss_pred hcCHHHHHHHHHHHHHHhh--ccCCCEEEecC-------CCccccHHHHHHHhCC----CEEEEeecCCCCCccchhhhh
Q 031576 41 LLDHKAFKDTVDIFVDRYR--DMGISVVAGIE-------ARGFVFGPSIALAIGA----KFVPLRKPNKLPGEVISEAYV 107 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~--~~~~d~Vv~v~-------~~G~~~a~~la~~l~~----p~~~~rk~~~~~~~~~~~~~~ 107 (157)
..+..+...++++|+..+. ...+|.||+|| .+||+++..+|+.++. |+...+.+.+.++...+...+
T Consensus 88 ~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~r 167 (225)
T COG1040 88 QGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALER 167 (225)
T ss_pred CCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchHHHHHHhccccccccchHHH
Confidence 4567788888888888877 34789999998 6999998888888754 443344444445544444444
Q ss_pred hhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 108 ~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+.++.|.+..+.. ..++|+|||||+|||+|+.++.+.|++.|++.|
T Consensus 168 r~nl~~aF~~~~~~~-~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v 215 (225)
T COG1040 168 RRNLKGAFRLKKGIE-EPKNVLLVDDVYTTGATLKEAAKLLREAGAKRV 215 (225)
T ss_pred HHhccCCeecCCCCC-CCCeEEEEecccccHHHHHHHHHHHHHcCCceE
Confidence 555566777654432 239999999999999999999999999999865
No 27
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.73 E-value=2.6e-17 Score=123.41 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=78.9
Q ss_pred cCHHHHHHHHHHHHHHhhcc---CCCEEEecC-------CCccccHHHHHHHhCCC---E--EEEeecCCCCCccchhhh
Q 031576 42 LDHKAFKDTVDIFVDRYRDM---GISVVAGIE-------ARGFVFGPSIALAIGAK---F--VPLRKPNKLPGEVISEAY 106 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~---~~d~Vv~v~-------~~G~~~a~~la~~l~~p---~--~~~rk~~~~~~~~~~~~~ 106 (157)
.+..+.+.++..|+..+... .+|.|++|| .|||+.+..+|+.+... + .+.+.+. .++...+...
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~-~~Q~~l~~~~ 134 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNN-ETQSKLKATL 134 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecc-cccccCCHHH
Confidence 45667778888887665432 368999999 59998777777665421 2 2233333 3444444444
Q ss_pred hhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 107 VLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 107 ~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+..+..+.|.+... ..+|++|||||||+|||+|+.++++.|+++|+..|
T Consensus 135 R~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V 183 (190)
T TIGR00201 135 RFLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASV 183 (190)
T ss_pred HHHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEE
Confidence 44445566776433 35899999999999999999999999999999875
No 28
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.64 E-value=1.9e-15 Score=112.61 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred cCHHHHHHHHHHHHHHhhc---cCCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccchhhhhhhcccccee
Q 031576 42 LDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRLE 116 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~---~~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (157)
.+.+.+....+.|+.++.+ .+.++|+++..+|+.+|..+|+.+++|+. .+++.+...... . ....+.
T Consensus 17 ~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~-------~-~~~~~~ 88 (181)
T PRK09162 17 VSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETT-------G-GELVWK 88 (181)
T ss_pred ecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCcc-------C-CceeEe
Confidence 3444555555555554432 24579999999999999999999999863 333222110000 0 001122
Q ss_pred eecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 117 i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+.....++|++|||||||+|||+|+.++++.|++.|++.+
T Consensus 89 ~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V 128 (181)
T PRK09162 89 VKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEV 128 (181)
T ss_pred cCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEE
Confidence 2122235899999999999999999999999999998754
No 29
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.64 E-value=2e-15 Score=109.92 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=73.7
Q ss_pred hcCHHHHHHHHHHHHHHhhcc-CCCEEEecCCCccccHHHHHHHhCCCEEE-EeecCCCCCccchhhhhhhccccceeee
Q 031576 41 LLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH 118 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~~~-~~d~Vv~v~~~G~~~a~~la~~l~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~i~ 118 (157)
+.+.+.++..++.|++++.+. ++|+|+|+++||+.+|..|+++|++|++. ++-. +|..+ .++...+.
T Consensus 9 ~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~s----------sY~~~-~~~~~~~~ 77 (156)
T PRK09177 9 PVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCIS----------SYDHD-NQGELKVL 77 (156)
T ss_pred EcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEE----------EECCC-cCCcEEEe
Confidence 356777778888888888654 48999999999999999999999999642 2211 11111 12233333
Q ss_pred cCCCCCCCEEEEEeccccchHHHHHHHHHHHh
Q 031576 119 VGAIEPGERALVIDDLVATGGTLSAAVRLLGR 150 (157)
Q Consensus 119 ~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~ 150 (157)
.+...+|++|||||||++||.|+.++.+.+.+
T Consensus 78 ~~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~ 109 (156)
T PRK09177 78 KRAEGDGEGFLVVDDLVDTGGTARAVREMYPK 109 (156)
T ss_pred cCCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh
Confidence 33345899999999999999999999999875
No 30
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.64 E-value=1.7e-15 Score=116.56 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=76.7
Q ss_pred hcCHHHHHHHHHHHHHHhh------c-cCCCEEEecC-------CCccccHHHH----HHHhCCCEE---EEeecCCCCC
Q 031576 41 LLDHKAFKDTVDIFVDRYR------D-MGISVVAGIE-------ARGFVFGPSI----ALAIGAKFV---PLRKPNKLPG 99 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~------~-~~~d~Vv~v~-------~~G~~~a~~l----a~~l~~p~~---~~rk~~~~~~ 99 (157)
..+....+.+++.|++.+. . ..+|.|++|| .|||+.+..+ |..+++|+. ..+.+...++
T Consensus 84 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q 163 (227)
T PRK11595 84 SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQ 163 (227)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCc
Confidence 3467777778888775432 1 2578999998 4799765555 455688763 2333333334
Q ss_pred ccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 100 EVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
...+...+..+..+.|.+. .. .+|++|||||||+|||+|+.++++.|+++|+..|
T Consensus 164 ~~l~~~~R~~n~~~~f~~~-~~-~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V 218 (227)
T PRK11595 164 HFLSARLRKRNLKNAFRLE-LP-VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASV 218 (227)
T ss_pred ccCCHHHHhhhhhhhhccC-CC-CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEE
Confidence 3333333333334445543 22 5899999999999999999999999999998865
No 31
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.64 E-value=1.8e-15 Score=126.49 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCE--EEEeecCCCCCccchhhhhhhccccceeeec-CC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKF--VPLRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 121 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~-~~ 121 (157)
+....+++.|++.+.. +.|+|+++|.+|++.|..+|+.+++|+ .++|++. ..+...+...+..+....+.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~-~~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHY-VGRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeec-cccccCCHHHHHHhhheeEEeccccc
Confidence 4556888888887754 678999999999999999999999998 4555432 11111111111122223344332 23
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+|+||||++|||+|+.++++.|+++||+.+
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V 371 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEI 371 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEE
Confidence 35899999999999999999999999999999864
No 32
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.63 E-value=1.2e-15 Score=128.70 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchh---hhhhhccccceeee-cC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISE---AYVLEYGTDRLEMH-VG 120 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~---~~~~~~~~~~~~i~-~~ 120 (157)
+.-..+++.|++... .++|+|+|+|.+|+++|..+|+.+|+|+.....+++..+.++.. ..+.... ++.+. ..
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~--~~kl~~~~ 372 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGI--RMKLNPLK 372 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhh--heeeeccc
Confidence 345577888876543 37899999999999999999999999996322222222111111 1111111 12221 12
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
...+||+|+||||++|||+|+.+++++|+++||+.|
T Consensus 373 ~~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV 408 (500)
T PRK07349 373 DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEV 408 (500)
T ss_pred cccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEE
Confidence 335899999999999999999999999999999875
No 33
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.62 E-value=2.4e-15 Score=126.28 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE--EeecCC-CCCccchhhhhhhccccceeeecCC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNK-LPGEVISEAYVLEYGTDRLEMHVGA 121 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~--~rk~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (157)
+.-..+++.||+... .++|+|+++|..|.+.|..+|+.+|+|+.. ++++.. .+....+...+..+.+..|.+.. .
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~-~ 344 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVR-G 344 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccc-c
Confidence 445588888888663 378999999999999999999999999853 333221 11111122223333344565332 3
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+|+||||++|||+|+.+++++|+++||+.|
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV 379 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEV 379 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEE
Confidence 45899999999999999999999999999999875
No 34
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.61 E-value=9.3e-15 Score=107.46 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHHHHHHhhcc---CCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccchhhhhhhcccccee
Q 031576 42 LDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRLE 116 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~---~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (157)
.+.+.++...+.|++++.+. +.++|+||.+||+++|..+++.|++|.. .+......... ...+.....
T Consensus 3 is~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~-------~~~~~~~~~ 75 (166)
T TIGR01203 3 IPEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGM-------QSSGDVKIL 75 (166)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCC-------cccCceEEe
Confidence 35555666666666665432 4679999999999999999999998753 23221100000 000100111
Q ss_pred eecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 117 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 117 i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.......+|++|||||||++||+|+.++++.|++.|++.+
T Consensus 76 ~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i 115 (166)
T TIGR01203 76 KDLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSL 115 (166)
T ss_pred cCCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEE
Confidence 1112235899999999999999999999999999998643
No 35
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.61 E-value=3e-15 Score=126.77 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE--EeecCC-CCCccchhhhhhhccccceeeecC
Q 031576 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNK-LPGEVISEAYVLEYGTDRLEMHVG 120 (157)
Q Consensus 44 ~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~--~rk~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 120 (157)
..+.+.+++.+...+...+.|+|+++|.++..+|..+|+.+++|+.. ++++.. .+....+...+....+..|....
T Consensus 275 ~~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~- 353 (501)
T PRK09246 275 LRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIR- 353 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCcc-
Confidence 34444555555444433357999999999999999999999999852 332211 11111111122222223343322
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..++||+||||||++|||+|+.++++.|+++||+.|
T Consensus 354 ~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V 389 (501)
T PRK09246 354 AEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKV 389 (501)
T ss_pred ccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEE
Confidence 235899999999999999999999999999999865
No 36
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.60 E-value=2.7e-15 Score=125.36 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE--EeecCCCCCccc---hhhhhhhccccceeeecC
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVI---SEAYVLEYGTDRLEMHVG 120 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~--~rk~~~~~~~~~---~~~~~~~~~~~~~~i~~~ 120 (157)
.-..+++.|++... .++|+|+++|..|+++|..+|+.+++|+.. .+++ ..+.+. .+..+......++....
T Consensus 258 ~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~--~~~r~~i~~~q~~R~~~v~~k~~~~~- 333 (442)
T TIGR01134 258 ARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNR--YVGRTFIMPTQELRELSVRLKLNPIR- 333 (442)
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEec--cccccccCCCHHHHHHHHhhhccccc-
Confidence 45577888887653 378999999999999999999999999863 3322 111111 11111111222332222
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
...+||+||||||++|||+|+++++++|+++||+.+
T Consensus 334 ~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v 369 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEV 369 (442)
T ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEE
Confidence 235899999999999999999999999999999875
No 37
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.59 E-value=1.3e-14 Score=108.66 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=75.2
Q ss_pred hhhcCHHHHHHHHHHHHHHhhcc---CCCEEEecCCCccccHHHHHHHhCC---CEE--EEeecCCCCCccchhhhhhhc
Q 031576 39 TLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---KFV--PLRKPNKLPGEVISEAYVLEY 110 (157)
Q Consensus 39 ~l~~~~~~~~~l~~~la~~~~~~---~~d~Vv~v~~~G~~~a~~la~~l~~---p~~--~~rk~~~~~~~~~~~~~~~~~ 110 (157)
.++.+.+.++...+.||.++.+. ..++|+|+.+||+++|..+++.++. |+. +++..+...+ + .
T Consensus 9 ~~lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~-~--------~ 79 (189)
T PLN02238 9 KVLWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGG-T--------E 79 (189)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCC-c--------c
Confidence 34456666666566666655431 4589999999999999999999998 763 3443221000 0 0
Q ss_pred cccceeeec---CCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 111 GTDRLEMHV---GAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 111 ~~~~~~i~~---~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.++...+.. ....+|++|||||||+|||.|+.++++.|++.|++.+
T Consensus 80 ~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v 128 (189)
T PLN02238 80 SSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASV 128 (189)
T ss_pred ccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEE
Confidence 111222222 1235899999999999999999999999999998764
No 38
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=6.5e-15 Score=123.88 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccc---hhhhhhhccccceeeecCC
Q 031576 47 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVI---SEAYVLEYGTDRLEMHVGA 121 (157)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~---~~~~~~~~~~~~~~i~~~~ 121 (157)
...+++.|++.+.. ++|+|+|||..|.++|..+|+.+++|+. .++.+ ..+.++ +...+....+..|... ..
T Consensus 271 R~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~--~~~rt~~~~~q~~R~~~vr~~f~~~-~~ 346 (484)
T PRK07272 271 RKRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQ--YVARTFIQPTQELREQGVRMKLSAV-SG 346 (484)
T ss_pred HHHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEc--cCCccccCCCHHHHHHHHhhCcccc-cc
Confidence 35778888876643 5799999999999999999999999984 33322 111111 1122222223345432 23
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+|+||||++|||+|+.+++++|+++||+.+
T Consensus 347 ~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v 381 (484)
T PRK07272 347 VVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEV 381 (484)
T ss_pred ccCCCEEEEEccccCchHHHHHHHHHHHhcCCcEE
Confidence 45899999999999999999999999999999875
No 39
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=1.1e-14 Score=122.27 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE--EeecCC-CCCccchhhhhhhccccceeeecCC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNK-LPGEVISEAYVLEYGTDRLEMHVGA 121 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~--~rk~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (157)
+.-..+++.||+... .++|+|+++|..|.++|..+|+.+|+|+.. +|++.. .+....+...+..+.+..|.... .
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~-~ 344 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVR-G 344 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcc-c
Confidence 345588888887653 478999999999999999999999999953 332221 11111111122222233443322 3
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+|+||||++|||+|+.++++.|+++||+.|
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV 379 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEV 379 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEE
Confidence 45899999999999999999999999999999865
No 40
>PLN02440 amidophosphoribosyltransferase
Probab=99.56 E-value=1.1e-14 Score=122.81 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccch-hhhhhhccccceeeec-CC
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVIS-EAYVLEYGTDRLEMHV-GA 121 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~~-~~~~~~~~~~~~~i~~-~~ 121 (157)
.-..+++.|++.+.. ++|+|+++|.+|+.+|..+|+.+++|+. ++|.+. .+.++. ..........+..+.. ..
T Consensus 260 ~r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry--~~rt~i~~~q~~r~~~~~~k~~~~~~ 336 (479)
T PLN02440 260 SRLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHY--VGRTFIEPSQKIRDFSVKLKLNPVRS 336 (479)
T ss_pred HHHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEee--ccccccCcchhhhhhhheeeeecccc
Confidence 344677888876643 6899999999999999999999999985 344322 111110 0000000111222221 12
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+||||||++|||+|++++++.|+++||+.|
T Consensus 337 ~v~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V 371 (479)
T PLN02440 337 VLEGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEV 371 (479)
T ss_pred cccCceEEEEeceeCcHHHHHHHHHHHHhcCCCEE
Confidence 35899999999999999999999999999999865
No 41
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.56 E-value=1.5e-14 Score=122.38 Aligned_cols=111 Identities=20% Similarity=0.180 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhh-hhccccceeeec-CCC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYV-LEYGTDRLEMHV-GAI 122 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~-~~~~~~~~~i~~-~~~ 122 (157)
+.-..+++.|++... .+.|+|+++|.+|++.|..+|+.+++|+.....++...+.+...... ......++.+.. ...
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~ 364 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREV 364 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccc
Confidence 455688888987653 47899999999999999999999999985432222111111111000 000011122211 223
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
++||+||||||++|||+|+.++++.|+++|++.|
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v 398 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEV 398 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEE
Confidence 5899999999999999999999999999999865
No 42
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.55 E-value=2.2e-14 Score=120.54 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE--EeecCCCCCccchhhhhh-hccccceeeec-CC
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVL-EYGTDRLEMHV-GA 121 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~--~rk~~~~~~~~~~~~~~~-~~~~~~~~i~~-~~ 121 (157)
.-..+++.|++... .+.|+|+++|..|.+.|..+|+.+++|+.. .|.+.. ..++...... ....-++.+.. ..
T Consensus 276 ~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~--~r~fi~~~q~~R~~~~~~kl~~~~~ 352 (474)
T PRK06388 276 ARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYS--ERTFIMPTQSDRKAAIKLKLNPIRE 352 (474)
T ss_pred HHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEeccc--CCcccCCchhhhhhceeEEeccccc
Confidence 44577888887653 468999999999999999999999999953 332221 1111110000 00111222211 12
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+||+||||||++|||+|+++++++|+++||+.|
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V 387 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEV 387 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEE
Confidence 35899999999999999999999999999999865
No 43
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.55 E-value=3e-14 Score=119.77 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE--eecCCCCCccc---hhhhhhhccccceeeec-C
Q 031576 47 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL--RKPNKLPGEVI---SEAYVLEYGTDRLEMHV-G 120 (157)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~--rk~~~~~~~~~---~~~~~~~~~~~~~~i~~-~ 120 (157)
-..+++.|++.... +.|+|+++|.+|.++|..+|+.+++|+... +.+ ..+.+. ++..+.. ..++.... .
T Consensus 274 R~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~--~~~rtfi~~~q~~R~~--~~~~k~~~~~ 348 (469)
T PRK05793 274 RVRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNK--YVGRTFIAPSQELRER--AVRVKLNPLK 348 (469)
T ss_pred HHHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEee--eccccccChhHhhhhh--hheEecccCc
Confidence 34788889887643 678999999999999999999999999642 322 111111 1111111 11222211 1
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..++||+|+||||++|||+|+.++++.|+++||+.+
T Consensus 349 ~~v~gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V 384 (469)
T PRK05793 349 VNVEGKRVVLIDDSIVRGTTSKRLVELLRKAGAKEV 384 (469)
T ss_pred cccCCCEEEEEccccCchHHHHHHHHHHHHcCCCEE
Confidence 235899999999999999999999999999999865
No 44
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.55 E-value=4.8e-14 Score=105.36 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=74.3
Q ss_pred hcCHHHHHHHHHHHHHHhh--ccCCCEEEecCCCccccHHHHHHHhCC-CEEEEeecCCCCCccchhhhhhhccccceee
Q 031576 41 LLDHKAFKDTVDIFVDRYR--DMGISVVAGIEARGFVFGPSIALAIGA-KFVPLRKPNKLPGEVISEAYVLEYGTDRLEM 117 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~--~~~~d~Vv~v~~~G~~~a~~la~~l~~-p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i 117 (157)
+.+.+.+..+++.||+++. ++.||+|+++.+||+.+|..||..|++ |+..+...+.. .. ........+
T Consensus 6 ~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~------~~---~~~~~~~~v 76 (192)
T COG2236 6 YVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYD------ET---AERDGEAKV 76 (192)
T ss_pred EecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEeh------hh---cccCCccee
Confidence 4566778889999999986 468999999999999999999999998 55444322210 00 000011111
Q ss_pred ecC---CCCCCCEEEEEeccccchHHHHHHHHHHHhc
Q 031576 118 HVG---AIEPGERALVIDDLVATGGTLSAAVRLLGRA 151 (157)
Q Consensus 118 ~~~---~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~ 151 (157)
... ....|+||||||||.+||.||..|.+.|++.
T Consensus 77 ~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~ 113 (192)
T COG2236 77 KYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKL 113 (192)
T ss_pred ecCccccccCCCeEEEEecccCchHhHHHHHHHHHhh
Confidence 111 1158999999999999999999999999983
No 45
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=6e-14 Score=104.20 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=72.5
Q ss_pred hhcCHHHHHHHHHHHHHHh----hcc-CCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccchhhhhhhccc
Q 031576 40 LLLDHKAFKDTVDIFVDRY----RDM-GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGT 112 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~----~~~-~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~~~~ 112 (157)
++.+.+.++...+.||.++ .+. ...+++|+.+||+.+|..|++.++.|.. +++..+...+. ...
T Consensus 7 ~l~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~---------~~~ 77 (178)
T PRK15423 7 VMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGM---------STT 77 (178)
T ss_pred EecCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCC---------ccc
Confidence 3445555555555555544 321 2369999999999999999999999843 44432211000 011
Q ss_pred cceeeec--CCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 113 DRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 113 ~~~~i~~--~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+...+.. ....+||+|||||||++||.|+.++.+.|++.|+..+
T Consensus 78 ~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v 123 (178)
T PRK15423 78 RDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSL 123 (178)
T ss_pred CceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEE
Confidence 1222222 2235899999999999999999999999999998754
No 46
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.54 E-value=3.2e-14 Score=119.75 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEE--EEeecCCCCCccchhhhhhhccccceeeec---
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRLEMHV--- 119 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~--~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~--- 119 (157)
+..+.+++.|++.... ++|+|+|||.+|+++|..+|+.+++|+. ++|.+ ..+.+...... ......+.+..
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~--y~grt~i~~~q-~~r~~~v~~k~~~~ 354 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNH--YVGRTFIQPTQ-QIRNLGVKLKHNAN 354 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEe--ecCcccccccc-ccccccEEEEeccc
Confidence 4566778888876643 7899999999999999999999999996 34432 11212111000 00111222211
Q ss_pred CCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 120 GAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 120 ~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
....+||+|+||||+++||+|+.++++.|+++||+.+
T Consensus 355 ~~~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v 391 (479)
T PRK09123 355 RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEV 391 (479)
T ss_pred ccccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEE
Confidence 2335899999999999999999999999999999865
No 47
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=2.8e-14 Score=118.99 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE-EeecCCCCCccchhhhhhhccccceeeec-CCC
Q 031576 45 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAI 122 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~ 122 (157)
..-..+++.|++... .++|+|+++|..|..+|..+|+.+|+|+.. +.|.+ ..+.++..... ......+.+.. ...
T Consensus 255 ~~R~~~G~~La~~~~-~~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r-~~~rtfi~~~q-r~~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNR-YIGRTFIMPSG-RELKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccC-CCCceEEEecCchHHHHHHHHHHhCCCchheEEEec-cccccccCcCc-hhhhheeeecccccc
Confidence 445577888887653 367999999999999999999999999963 33322 11111111000 00111222211 223
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.+||+|+||||++|||+|+.+++++|+++||+.|
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V 365 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREV 365 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEE
Confidence 5899999999999999999999999999999864
No 48
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.53 E-value=5.8e-14 Score=111.39 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=73.1
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcccccee
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 116 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~ 116 (157)
+.+++..|.+.+ ++.+.. ..+..+||+|+.||...|..+|..|+.|+.++.|++. +. .+..+
T Consensus 143 vdnl~a~p~l~~----~~~~~~-~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~-~~------------~~~v~ 204 (314)
T COG0462 143 VDNLYAAPLLAE----YIREKY-DLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRD-SS------------PNVVE 204 (314)
T ss_pred cccccchHHHHH----HHHHhc-CCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeec-CC------------CCeEE
Confidence 344555554443 333333 2222599999999999999999999999998887752 10 01111
Q ss_pred e-ecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 117 M-HVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 117 i-~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+ ......+||+|+||||+++||+|+..|+++|++.||+.|
T Consensus 205 ~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V 245 (314)
T COG0462 205 VMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKV 245 (314)
T ss_pred EeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeE
Confidence 1 111235999999999999999999999999999999864
No 49
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.53 E-value=6.7e-14 Score=111.75 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=64.9
Q ss_pred CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHH
Q 031576 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl 141 (157)
+.++|++|+.||..+|..+|+.+++|+.+++|.+.... ............+|++|+|||||+|||+|+
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~------------~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl 227 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDR------------DVEISLPDAAPWAGRTPVLVDDIVSTGRTL 227 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCC------------eEEEEeccCcccCCCEEEEEecccCcHHHH
Confidence 34699999999999999999999999988877542111 001111112335899999999999999999
Q ss_pred HHHHHHHHhcCCccc
Q 031576 142 SAAVRLLGRAHGGRS 156 (157)
Q Consensus 142 ~~a~~~L~~~Ga~vv 156 (157)
.++++.|+++||+.+
T Consensus 228 ~~aa~~Lk~~GA~~V 242 (301)
T PRK07199 228 IEAARQLRAAGAASP 242 (301)
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999999754
No 50
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=102.51 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=71.8
Q ss_pred hhcCHHHHHHHHHHHHHHhhc----cCCCEEEecCCCccccHHHHHHHh----CCC--EEEEeecCCCCCccchhhhhhh
Q 031576 40 LLLDHKAFKDTVDIFVDRYRD----MGISVVAGIEARGFVFGPSIALAI----GAK--FVPLRKPNKLPGEVISEAYVLE 109 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~----~~~d~Vv~v~~~G~~~a~~la~~l----~~p--~~~~rk~~~~~~~~~~~~~~~~ 109 (157)
.+.+++.++...+.|+.++.. .+.++|+|+.+||+++|..+++.+ ++| +.+++......... .
T Consensus 5 ~l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~-------~ 77 (176)
T PRK05205 5 EILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLT-------K 77 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCcc-------c
Confidence 445777777777777777654 246899999999999999999999 544 33332211000000 0
Q ss_pred ccccc-ee-eecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcC-Cc
Q 031576 110 YGTDR-LE-MHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAH-GG 154 (157)
Q Consensus 110 ~~~~~-~~-i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~G-a~ 154 (157)
.+... .. .......+|++|||||||++||+|+.++++.|++.| ++
T Consensus 78 ~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~ 125 (176)
T PRK05205 78 KGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPA 125 (176)
T ss_pred cCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCc
Confidence 00000 10 001122589999999999999999999999999998 44
No 51
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=9.9e-14 Score=110.04 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=63.7
Q ss_pred CCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeee-cCCCCCCCEEEEEeccccchHHH
Q 031576 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGERALVIDDLVATGGTL 141 (157)
Q Consensus 63 ~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~gk~VLlVDDvitTG~Tl 141 (157)
.++|++++.||+.+|..+|+.+++|+.+++|.+.... ...+. .....+|++|+||||+++||+|+
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~--------------~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl 220 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPT--------------EVEIAPKNLDVKGKDVLIVDDIISTGGTM 220 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCC--------------eEEEeccccccCCCEEEEEcCccccHHHH
Confidence 4599999999999999999999999988876542111 11111 11235899999999999999999
Q ss_pred HHHHHHHHhcCCccc
Q 031576 142 SAAVRLLGRAHGGRS 156 (157)
Q Consensus 142 ~~a~~~L~~~Ga~vv 156 (157)
..+++.|++.||+.+
T Consensus 221 ~~aa~~Lk~~GA~~V 235 (285)
T PRK00934 221 ATAIKILKEQGAKKV 235 (285)
T ss_pred HHHHHHHHHCCCCEE
Confidence 999999999999754
No 52
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.50 E-value=1.9e-13 Score=110.04 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=64.3
Q ss_pred CCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHH
Q 031576 63 ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 142 (157)
Q Consensus 63 ~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~ 142 (157)
..+||+|+.||..+|..+|+.+++|+.+++|++... .......+.+. +. .+|++|||||||+|||+|+.
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~---------~~~~~~~~~~~-gd-v~Gr~viIVDDIidTG~Tl~ 234 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVD---------KMNTSEVMNII-GN-VKGKKCILIDDMIDTAGTIC 234 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCC---------CCceeEEEEec-cc-cCCCEEEEEeeecCcHHHHH
Confidence 358999999999999999999999998887654210 00011112221 23 48999999999999999999
Q ss_pred HHHHHHHhcCCccc
Q 031576 143 AAVRLLGRAHGGRS 156 (157)
Q Consensus 143 ~a~~~L~~~Ga~vv 156 (157)
++++.|++.||+.+
T Consensus 235 ~aa~~Lk~~GA~~V 248 (320)
T PRK02269 235 HAADALAEAGATEV 248 (320)
T ss_pred HHHHHHHHCCCCEE
Confidence 99999999999865
No 53
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.46 E-value=4.4e-13 Score=107.73 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=64.1
Q ss_pred CCEEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHH
Q 031576 63 ISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (157)
Q Consensus 63 ~d~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl 141 (157)
.-+||+|+.||..+|..+|+.++ .|+.++.|++.... ....+.+ .+. .+||+|+|||||++||+|+
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~-----------~~~~~~~-~gd-v~Gr~viIVDDIidTG~Tl 233 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRAN-----------VATVMNI-IGD-VQGKTCVLVDDLVDTAGTL 233 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCC-----------ceEEEec-ccC-CCCCEEEEEecccCchHHH
Confidence 34999999999999999999998 89998877652110 0011111 123 5999999999999999999
Q ss_pred HHHHHHHHhcCCccc
Q 031576 142 SAAVRLLGRAHGGRS 156 (157)
Q Consensus 142 ~~a~~~L~~~Ga~vv 156 (157)
.++++.|+++||+.+
T Consensus 234 ~~aa~~Lk~~GA~~V 248 (319)
T PRK04923 234 CAAAAALKQRGALKV 248 (319)
T ss_pred HHHHHHHHHCCCCEE
Confidence 999999999999865
No 54
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=99.92 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=72.2
Q ss_pred hhhcCHHHHHHHHHHHHHHhhc---------cCCCEEEecCCCccccHHHHHHHhC---CCEE--EEeecCCCCCccchh
Q 031576 39 TLLLDHKAFKDTVDIFVDRYRD---------MGISVVAGIEARGFVFGPSIALAIG---AKFV--PLRKPNKLPGEVISE 104 (157)
Q Consensus 39 ~l~~~~~~~~~l~~~la~~~~~---------~~~d~Vv~v~~~G~~~a~~la~~l~---~p~~--~~rk~~~~~~~~~~~ 104 (157)
.++.+.+.++...+.||.++.+ .++++|+|+.+||+.||..|+++|+ .|+. +++-.
T Consensus 25 ~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vs---------- 94 (211)
T PTZ00271 25 HTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICAS---------- 94 (211)
T ss_pred cEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEE----------
Confidence 3455666666666666655432 1367899999999999999999996 6642 22211
Q ss_pred hhhh-hccccceeeec--CCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 105 AYVL-EYGTDRLEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 105 ~~~~-~~~~~~~~i~~--~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
+|+. ....+.+.+.. ...++||+|||||||++||.|+.++.+.|++.|++.
T Consensus 95 sY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~s 148 (211)
T PTZ00271 95 SYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPAS 148 (211)
T ss_pred ecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCE
Confidence 1110 00112222221 223589999999999999999999999999998764
No 55
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.44 E-value=6.1e-13 Score=106.63 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHH
Q 031576 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 141 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl 141 (157)
+..+|++|+.||+.+|..+|+.+|+|+.+++|.+.... ....+.+. + ..+|++|+||||+++||+|+
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~-----------~~~~~~~~-~-~~~g~~vliVDDii~TG~T~ 224 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRAN-----------VSEVMNII-G-DVEGRDCILVDDMIDTAGTL 224 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccce-----------eEEEEeec-c-cCCCCEEEEEecccCcHHHH
Confidence 55699999999999999999999999998876542111 01112221 2 25899999999999999999
Q ss_pred HHHHHHHHhcCCccc
Q 031576 142 SAAVRLLGRAHGGRS 156 (157)
Q Consensus 142 ~~a~~~L~~~Ga~vv 156 (157)
..+++.|++.|++.+
T Consensus 225 ~~a~~~l~~~Ga~~v 239 (309)
T PRK01259 225 CKAAEALKERGAKSV 239 (309)
T ss_pred HHHHHHHHccCCCEE
Confidence 999999999999864
No 56
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.44 E-value=7.6e-13 Score=102.31 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=75.3
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhcc---CCCEEEecCCCccccHHHHHHHhCC---------CE-----EEEeecCCCCC
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---------KF-----VPLRKPNKLPG 99 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~---~~d~Vv~v~~~G~~~a~~la~~l~~---------p~-----~~~rk~~~~~~ 99 (157)
+..++.+.+.++...+.||.++... +..+|+|+.+||+.|+..|.+.++. |. -+++-.
T Consensus 53 ~~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vs----- 127 (241)
T PTZ00149 53 LTKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVK----- 127 (241)
T ss_pred ccEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEE-----
Confidence 4456677777777777777766432 4569999999999999999999872 21 122211
Q ss_pred ccchhhhhhhccccceeeecC--CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 100 EVISEAYVLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 100 ~~~~~~~~~~~~~~~~~i~~~--~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+|+.....+.+.+... ...+|++|||||||++||+|+.++++.|++.|++.+
T Consensus 128 -----SY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V 181 (241)
T PTZ00149 128 -----SYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTI 181 (241)
T ss_pred -----EccCCCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEE
Confidence 1211112222333221 235899999999999999999999999999998753
No 57
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.44 E-value=1.1e-12 Score=104.95 Aligned_cols=95 Identities=22% Similarity=0.239 Sum_probs=67.8
Q ss_pred HHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEE
Q 031576 50 TVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERA 128 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~V 128 (157)
+++++.+.+...+ -+||+|..||+.+|..+|+.++ .|+.+++|.+..... + ......+ ....+|++|
T Consensus 137 la~~i~~~~~~~~-~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~--------~-~~~~~~~--~~dv~gr~v 204 (304)
T PRK03092 137 LADYVRDKYDLDN-VTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVP--------N-QVVANRV--VGDVEGRTC 204 (304)
T ss_pred HHHHHHHhcCCCC-cEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCC--------C-ceEEEec--CcCCCCCEE
Confidence 3444443332223 3999999999999999999999 999888775421000 0 0001111 123589999
Q ss_pred EEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 129 LVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 129 LlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+||||+++||+|+.++++.|++.||..+
T Consensus 205 iIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I 232 (304)
T PRK03092 205 VLVDDMIDTGGTIAGAVRALKEAGAKDV 232 (304)
T ss_pred EEEccccCcHHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999999999998753
No 58
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.43 E-value=2e-13 Score=112.24 Aligned_cols=110 Identities=19% Similarity=0.167 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhh-ccccceeeec-CCCC
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE-YGTDRLEMHV-GAIE 123 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~ 123 (157)
.-..+++.|++... .+.|+|+|+|.+|.+.|..+|+++|+||..-..++.+.+.++-...... ...-++++.. ....
T Consensus 268 ~R~~mG~~La~e~~-~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v 346 (470)
T COG0034 268 ARKRMGEKLAEEIP-VEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVV 346 (470)
T ss_pred HHHHHHHHHHHhCC-ccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHh
Confidence 44577888887663 3679999999999999999999999999654434444444442211100 0011222221 2346
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+||||+||||-+-.|+|++..+++|+++||+.|
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEV 379 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEV 379 (470)
T ss_pred CCCeEEEEccccccCccHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999999999865
No 59
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.43 E-value=2.5e-12 Score=94.00 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=73.3
Q ss_pred hhcCHHHHHHHHHHHHH----HhhccCCCEEEecCCCccccHHHHHHHhCCCEEE----EeecCCCCCccchhhhhhhcc
Q 031576 40 LLLDHKAFKDTVDIFVD----RYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP----LRKPNKLPGEVISEAYVLEYG 111 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~----~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~----~rk~~~~~~~~~~~~~~~~~~ 111 (157)
++.+.+.++.-.+.|++ .+.+ +.-+++|+-.|+++|+..|.++++.|..+ +-..+. . +.+
T Consensus 10 vLisee~I~~ri~ela~~I~~~y~g-~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~---~--------t~s 77 (178)
T COG0634 10 VLISEEQIKARIKELAAQITEDYGG-KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGG---G--------TSS 77 (178)
T ss_pred EeeCHHHHHHHHHHHHHHHHHhhCC-CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCC---C--------ccc
Confidence 44566655554455554 4443 34499999999999999999999988642 211110 0 112
Q ss_pred ccceeeecC--CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 112 TDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 112 ~~~~~i~~~--~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
++.+.+.++ ..++||+|||||||++||.||..+.+.|+..||+.+
T Consensus 78 sg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv 124 (178)
T COG0634 78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSV 124 (178)
T ss_pred CCceEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeE
Confidence 223444333 346999999999999999999999999999999864
No 60
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.43 E-value=1e-12 Score=106.14 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=64.5
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
-+|++|+.||...|..+|+.+++|+.+++|++.... ....+.+. +. .+|++|+||||+++||+|+..
T Consensus 170 ~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~-----------~~~~~~~~-gd-v~Gk~VIIVDDIi~TG~Tl~~ 236 (332)
T PRK00553 170 LVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHN-----------VAESINVL-GE-VKNKNCLIVDDMIDTGGTVIA 236 (332)
T ss_pred eEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcc-----------eEeeEEee-cc-CCCCEEEEEeccccchHHHHH
Confidence 389999999999999999999999998887652110 11122221 23 589999999999999999999
Q ss_pred HHHHHHhcCCccc
Q 031576 144 AVRLLGRAHGGRS 156 (157)
Q Consensus 144 a~~~L~~~Ga~vv 156 (157)
+++.|+++||+.+
T Consensus 237 aa~~Lk~~GA~~V 249 (332)
T PRK00553 237 AAKLLKKQKAKKV 249 (332)
T ss_pred HHHHHHHcCCcEE
Confidence 9999999999865
No 61
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.39 E-value=2.7e-12 Score=103.41 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=62.4
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
-+|++|+.||..+|..+|+.+++|+.++++.+... + ... ..+ .+. .+|++|+|||||++||+|+.+
T Consensus 171 ~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~-------~----~~~-~~i-~gd-V~gk~viIVDDIidTG~Tl~~ 236 (323)
T PRK02458 171 VVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS-------E----REE-GYI-IGD-VAGKKAILIDDILNTGKTFAE 236 (323)
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC-------c----cee-ecc-ccc-cCCCEEEEEcceeCcHHHHHH
Confidence 48999999999999999999999998777543110 0 000 011 123 589999999999999999999
Q ss_pred HHHHHHhcCCccc
Q 031576 144 AVRLLGRAHGGRS 156 (157)
Q Consensus 144 a~~~L~~~Ga~vv 156 (157)
+++.|++.||+.+
T Consensus 237 aa~~Lk~~GA~~V 249 (323)
T PRK02458 237 AAKIVEREGATEI 249 (323)
T ss_pred HHHHHHhCCCCcE
Confidence 9999999999864
No 62
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.39 E-value=3.3e-12 Score=104.73 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=66.1
Q ss_pred CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccc-eeee-cCCCCCCCEEEEEeccccchH
Q 031576 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDR-LEMH-VGAIEPGERALVIDDLVATGG 139 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~gk~VLlVDDvitTG~ 139 (157)
+..+||+|+.||...|..+|..++.|+.+++|++...... .+.+. .... .+...+|++|+||||+++||+
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ai~~K~R~~~~~~--------~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~ 278 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLGVDLGLFYKRRDYSRVV--------NGRNPIVAHEFLGRDVEGKDVLIVDDMIASGG 278 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhCCCEEEEEcccCCcccc--------cCCCceEEEecCCcccCCCEEEEEeCCcCcHH
Confidence 3469999999999999999999999999988765321100 01111 1111 122358999999999999999
Q ss_pred HHHHHHHHHHhcCCccc
Q 031576 140 TLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 140 Tl~~a~~~L~~~Ga~vv 156 (157)
|+..+++.|++.||+.+
T Consensus 279 Tl~~aa~~Lk~~GA~~V 295 (382)
T PRK06827 279 SMIDAAKELKSRGAKKI 295 (382)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 99999999999999754
No 63
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.39 E-value=2e-12 Score=103.63 Aligned_cols=82 Identities=24% Similarity=0.354 Sum_probs=64.7
Q ss_pred CCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeee-cCCCCCCCEEEEEeccccchHH
Q 031576 62 GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEPGERALVIDDLVATGGT 140 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~gk~VLlVDDvitTG~T 140 (157)
+.++|++++.||+.+|..+|+.+|+|+..++|.+.... +..... .....+|++|+||||+++||+|
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~-------------~~~~~~~~~~~v~g~~vliVDDii~tG~T 225 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISAT-------------NEVEVMNLVGDVEGKDVVIVDDIIDTGGT 225 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCC-------------CEEEEEecccccCCCEEEEEccccCCHHH
Confidence 45699999999999999999999999998876542110 011111 1223589999999999999999
Q ss_pred HHHHHHHHHhcCCccc
Q 031576 141 LSAAVRLLGRAHGGRS 156 (157)
Q Consensus 141 l~~a~~~L~~~Ga~vv 156 (157)
+..+++.|++.|++.+
T Consensus 226 l~~a~~~l~~~ga~~v 241 (308)
T TIGR01251 226 IAKAAEILKSAGAKRV 241 (308)
T ss_pred HHHHHHHHHhcCCCEE
Confidence 9999999999999864
No 64
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.30 E-value=1.4e-11 Score=99.44 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=71.2
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccce
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRL 115 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~ 115 (157)
..++...|.+.+++.+ . ..+..+|++|+.||...|..+|+.++ .|+.++.|++.... ....+
T Consensus 160 v~nl~~~~~l~~~i~~----~--~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~-----------~~~~~ 222 (330)
T PRK02812 160 CDHVYGSPVLLDYLAS----K--NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHN-----------VAEVL 222 (330)
T ss_pred ceeeeChHHHHHHHHh----c--CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCc-----------eeeeE
Confidence 3445555555544322 1 11335999999999999999999995 89988876542110 00112
Q ss_pred eeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 116 ~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.+. + ..+|++|+||||+++||+|+..+++.|++.|++.+
T Consensus 223 ~~~-~-~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v 261 (330)
T PRK02812 223 NVI-G-DVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQV 261 (330)
T ss_pred ecc-c-cCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeE
Confidence 211 2 25899999999999999999999999999998754
No 65
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.29 E-value=2.3e-11 Score=97.29 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=62.5
Q ss_pred EEEecCCCccccHHHHHHHh-CCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 65 VVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
+|++++.||..+|..+++.+ +.|+.++.|++.... ....+.+ ....+|++|+||||+++||+|+.+
T Consensus 154 vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~-----------~~~~~~~--~~~v~g~~viivDDii~TG~Tl~~ 220 (302)
T PLN02369 154 VVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHN-----------VAEVMNL--IGDVKGKVAIMVDDMIDTAGTITK 220 (302)
T ss_pred EEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcc-----------eeeeEec--CCCCCCCEEEEEcCcccchHHHHH
Confidence 89999999999999999999 799988887652110 0111222 222489999999999999999999
Q ss_pred HHHHHHhcCCccc
Q 031576 144 AVRLLGRAHGGRS 156 (157)
Q Consensus 144 a~~~L~~~Ga~vv 156 (157)
+++.|++.|++.+
T Consensus 221 a~~~l~~~Ga~~v 233 (302)
T PLN02369 221 GAALLHQEGAREV 233 (302)
T ss_pred HHHHHHhCCCCEE
Confidence 9999999999754
No 66
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.25 E-value=4.3e-11 Score=96.31 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=59.1
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
.+||+|+.||...+..++ ++.|+.++.|.+. +............+|++|+|||||++||+|+.+
T Consensus 185 ~vvVsPD~Ga~~ra~~~a--~~~~~~~~~K~R~--------------g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~ 248 (326)
T PLN02297 185 IVIAFPDDGAWKRFHKQF--EHFPMVVCTKVRE--------------GDKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIE 248 (326)
T ss_pred cEEEecCccHHHHHHHHc--CCCCEEEEEeEEC--------------CCceEEEecccccCCCeEEEEecccCcHHHHHH
Confidence 489999999988777665 5789998887642 111111112233599999999999999999999
Q ss_pred HHHHHHhcCCccc
Q 031576 144 AVRLLGRAHGGRS 156 (157)
Q Consensus 144 a~~~L~~~Ga~vv 156 (157)
+++.|++.|++.+
T Consensus 249 aa~~L~~~Ga~~V 261 (326)
T PLN02297 249 CQKVLAAHGAAKV 261 (326)
T ss_pred HHHHHHHCCCcEE
Confidence 9999999999865
No 67
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.21 E-value=2.6e-11 Score=97.83 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhh---hhhhccccceeeecCCCC
Q 031576 47 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEA---YVLEYGTDRLEMHVGAIE 123 (157)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~ 123 (157)
-..+++.||. ..+.+.|+|+++|.+|..-|...|...|+||.....++.+.+.++.+. .+.-....+|...+ ...
T Consensus 277 R~~~G~~LA~-e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~-~~~ 354 (474)
T KOG0572|consen 277 RLQCGEQLAT-EAPVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLR-QNF 354 (474)
T ss_pred HHHHHhHhhh-cCCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccch-hhc
Confidence 3456777766 345689999999999999999999999999975544454444444221 11110112233222 235
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
+||||+||||-+..|+|+...+++|+++||+.|
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeV 387 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEV 387 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEE
Confidence 999999999999999999999999999999865
No 68
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.18 E-value=1.3e-10 Score=96.44 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=62.5
Q ss_pred CEEEecCCCccccHHHHHHHhC------CCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc
Q 031576 64 SVVAGIEARGFVFGPSIALAIG------AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT 137 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~------~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT 137 (157)
.+||++..||...|..+|..++ .++.++.|.+..... ...+.+. +. ++|++|+|||||++|
T Consensus 281 pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~-----------v~~~~lv-gd-V~Gk~vIIVDDIIdT 347 (439)
T PTZ00145 281 PVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNE-----------IEKMDLV-GN-VYDSDVIIVDDMIDT 347 (439)
T ss_pred cEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCc-----------eEEEecc-CC-CCCCEEEEEcceeCc
Confidence 4899999999999999999997 688887765532111 0112221 23 589999999999999
Q ss_pred hHHHHHHHHHHHhcCCccc
Q 031576 138 GGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 138 G~Tl~~a~~~L~~~Ga~vv 156 (157)
|+|+.++++.|++.||..+
T Consensus 348 G~Tl~~aa~~Lk~~GA~~V 366 (439)
T PTZ00145 348 SGTLCEAAKQLKKHGARRV 366 (439)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999754
No 69
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.15 E-value=5.3e-10 Score=83.98 Aligned_cols=108 Identities=23% Similarity=0.240 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCE--EEEeecCCCC-----------Cc--cchh----hhh
Q 031576 47 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKF--VPLRKPNKLP-----------GE--VISE----AYV 107 (157)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~--~~~rk~~~~~-----------~~--~~~~----~~~ 107 (157)
.+.+++.|+..-. .+.-+|+++|+||++.|..+|+.||.|+ +++||-+... +. .... ++.
T Consensus 11 Gr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~ 89 (220)
T COG1926 11 GRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLG 89 (220)
T ss_pred HHHHHHHHHhhcc-CCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhcc
Confidence 3444444444321 1233899999999999999999999998 4567644221 11 0000 000
Q ss_pred --hhcc------------ccceeeecC---CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 108 --LEYG------------TDRLEMHVG---AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 108 --~~~~------------~~~~~i~~~---~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.++- ........+ ...+|++|+||||-+.||+||.++++.+++.+++.
T Consensus 90 i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~ 154 (220)
T COG1926 90 IDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKE 154 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCce
Confidence 0000 000001111 12589999999999999999999999999998763
No 70
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.12 E-value=4.3e-10 Score=81.35 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=65.9
Q ss_pred hcCHHHHHHHHHHHHHHhhc----cCCCEEEecCCCccccHHHHHHHhC------CCEEEEe--ecC-CCCCccchhhhh
Q 031576 41 LLDHKAFKDTVDIFVDRYRD----MGISVVAGIEARGFVFGPSIALAIG------AKFVPLR--KPN-KLPGEVISEAYV 107 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~~----~~~d~Vv~v~~~G~~~a~~la~~l~------~p~~~~r--k~~-~~~~~~~~~~~~ 107 (157)
+.|++.++....+++.++.+ .+--+++|+.+||.++|..+++.++ +|+..+- -.+ ........ .
T Consensus 6 ild~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~---~ 82 (179)
T COG2065 6 ILDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPL---R 82 (179)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCcc---C
Confidence 45667666666666655533 2333899999999999999998864 4654321 111 00000000 0
Q ss_pred hhccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcC
Q 031576 108 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAH 152 (157)
Q Consensus 108 ~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~G 152 (157)
.......+ ...+.||+|+|||||+.||+|+++|++.|...|
T Consensus 83 p~~~~t~~----~~di~~k~VILVDDVLytGRTIRAAldal~d~G 123 (179)
T COG2065 83 PQAKTTIL----PFDITGKRVILVDDVLYTGRTIRAALDALVDYG 123 (179)
T ss_pred CcccCccC----cccccCCEEEEEeeecccCccHHHHHHHHHhcC
Confidence 00000000 122589999999999999999999999999887
No 71
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.08 E-value=3.2e-10 Score=88.96 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=78.4
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcccc-ce
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD-RL 115 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~-~~ 115 (157)
+.+++..|..++++... ..+++.-+|+.+..||..-++.+|..|++-+..+.+.+.. .++-. ..
T Consensus 142 Vdnly~~p~~l~~ir~~----~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k-----------~~~v~~~m 206 (316)
T KOG1448|consen 142 VDNLYAEPAVLNYIREN----IPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRK-----------ANEVDIRM 206 (316)
T ss_pred chhhccchHHHHHHHhh----CCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhc-----------ccccceEE
Confidence 78899999988776655 3344555888899999999999999999888776554321 11111 11
Q ss_pred eeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 116 EMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 116 ~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
.+ .+. ++||.++||||++.|++|+..+++.|.++||+.|
T Consensus 207 ~L-VGD-v~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV 245 (316)
T KOG1448|consen 207 VL-VGD-VKGKVAILVDDMADTCGTLIKAADKLLEHGAKKV 245 (316)
T ss_pred EE-Eec-cCCcEEEEecccccccchHHHHHHHHHhcCCceE
Confidence 11 133 5999999999999999999999999999999864
No 72
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.06 E-value=5.2e-10 Score=82.97 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=57.7
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCC----------Cccc-hhhh------hhhcc-c-cceeeecCCCCC
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP----------GEVI-SEAY------VLEYG-T-DRLEMHVGAIEP 124 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~----------~~~~-~~~~------~~~~~-~-~~~~i~~~~~~~ 124 (157)
-+||++..+|..-|+.+|+.|++.+.++.+++... .+.. +... ..... + ..+.+. +. ++
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vV-GD-V~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVV-GD-VK 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEE-S---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEE-EE-cc
Confidence 48999999999999999999999998887644210 0000 0000 00000 0 012221 23 59
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 125 GERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 125 gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
||.++||||+++||.|+..+++.|++.||..+
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V 114 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKV 114 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEE
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999754
No 73
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=98.99 E-value=2.2e-09 Score=81.66 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=57.6
Q ss_pred EEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 65 VVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
++|++.++|++++..+++.++ .++..+...+.. . +..............+|++||||||+++||+|+..
T Consensus 73 vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~--~--------t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ 142 (209)
T PRK00129 73 VIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDE--E--------TLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIA 142 (209)
T ss_pred EEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCC--C--------CCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHH
Confidence 788999999999999999997 455444332210 0 00000111112233589999999999999999999
Q ss_pred HHHHHHhcCCcc
Q 031576 144 AVRLLGRAHGGR 155 (157)
Q Consensus 144 a~~~L~~~Ga~v 155 (157)
+++.|++.|++.
T Consensus 143 ai~~L~~~G~~~ 154 (209)
T PRK00129 143 AIDLLKKRGAKN 154 (209)
T ss_pred HHHHHHHcCCCE
Confidence 999999999764
No 74
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=98.92 E-value=5.1e-09 Score=79.58 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=57.1
Q ss_pred EEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHHHHH
Q 031576 65 VVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSA 143 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~ 143 (157)
+++++.++|++++..+.+.+. .++..+...+.. .+.+............+|++||||||+++||+|+..
T Consensus 71 ~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~----------~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ 140 (207)
T TIGR01091 71 VLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE----------ETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIA 140 (207)
T ss_pred EEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC----------CCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHH
Confidence 678888999999999999987 355444332210 000001111122233589999999999999999999
Q ss_pred HHHHHHhcCCcc
Q 031576 144 AVRLLGRAHGGR 155 (157)
Q Consensus 144 a~~~L~~~Ga~v 155 (157)
+++.|++.|++.
T Consensus 141 ai~~L~~~G~~~ 152 (207)
T TIGR01091 141 ALDLLKKRGAKK 152 (207)
T ss_pred HHHHHHHcCCCE
Confidence 999999999864
No 75
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.3e-08 Score=74.31 Aligned_cols=114 Identities=16% Similarity=0.257 Sum_probs=74.3
Q ss_pred EEEehHhhhcCHHHHHHHHHHHHHHhhcc---CCCEEEecCCCccccHHHHHHHh-C------CCEE--EEeecCCCCCc
Q 031576 33 MFQDITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAI-G------AKFV--PLRKPNKLPGE 100 (157)
Q Consensus 33 ~~~d~~~l~~~~~~~~~l~~~la~~~~~~---~~d~Vv~v~~~G~~~a~~la~~l-~------~p~~--~~rk~~~~~~~ 100 (157)
++-|+..++.-..++..-.++||..+.+. .+-+++|+.+||+.|-+.+-+++ + +|+. ++|-+.
T Consensus 28 y~~Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kS----- 102 (216)
T KOG3367|consen 28 YTGDLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKS----- 102 (216)
T ss_pred ecccccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhh-----
Confidence 45566666666666666667777665432 34489999999998877777774 3 3443 233221
Q ss_pred cchhhhhhhccccceeeec-C--CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 101 VISEAYVLEYGTDRLEMHV-G--AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 101 ~~~~~~~~~~~~~~~~i~~-~--~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
|......+.+.+-- + .-..||+|||||||++||+||....+.+++.+++.+
T Consensus 103 -----Y~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v 156 (216)
T KOG3367|consen 103 -----YCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMV 156 (216)
T ss_pred -----hcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccce
Confidence 11111112222211 1 225899999999999999999999999999988643
No 76
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.36 E-value=2.1e-06 Score=64.00 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=77.0
Q ss_pred hcCHHHHHHHHHHHHHHhhcc--CCCEEEecCCCccccHHHHHHHhCCCEEEEeecC-CCCCccchhhhhhhcccc---c
Q 031576 41 LLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPN-KLPGEVISEAYVLEYGTD---R 114 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~~~--~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~-~~~~~~~~~~~~~~~~~~---~ 114 (157)
-.+|..+..++..|+..+.+. ++-+++|..+-+..++..+++.++-...++...+ ..++......+..+++.. .
T Consensus 30 Pv~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ 109 (191)
T PF15609_consen 30 PVRPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVPPLLEFEEEHSHATDHL 109 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCccceeeeccccccccce
Confidence 356999999999999988753 5669999999999999999999984434444322 233312222333333322 2
Q ss_pred eeeec-CCCCCCCEEEEEeccccchHHHHHHHHHHHhcC
Q 031576 115 LEMHV-GAIEPGERALVIDDLVATGGTLSAAVRLLGRAH 152 (157)
Q Consensus 115 ~~i~~-~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~G 152 (157)
++... ..+...+.++||||=+|||+|...+++.|++.-
T Consensus 110 ly~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~ 148 (191)
T PF15609_consen 110 LYPPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKY 148 (191)
T ss_pred ecCCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhC
Confidence 22211 123456799999999999999999999998753
No 77
>PLN02541 uracil phosphoribosyltransferase
Probab=97.92 E-value=4.9e-05 Score=59.17 Aligned_cols=32 Identities=41% Similarity=0.587 Sum_probs=29.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.++++|+|+||++.||+|+.++++.|++.|+.
T Consensus 155 ~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~ 186 (244)
T PLN02541 155 PEGSRVLVVDPMLATGGTIVAAIDELVSRGAS 186 (244)
T ss_pred CCCCEEEEECcchhhhHHHHHHHHHHHHcCCC
Confidence 35789999999999999999999999999986
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.51 E-value=0.00045 Score=52.48 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=52.2
Q ss_pred EEEecCCCccccHHHHHHHhC-CCEEEEeecCCCCCccchhhhhhhccccceee-ecCCCCCCCEEEEEeccccchHHHH
Q 031576 65 VVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEM-HVGAIEPGERALVIDDLVATGGTLS 142 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~gk~VLlVDDvitTG~Tl~ 142 (157)
++|++.++|.++...+.+.+- .++..+.-.+. .+..+..++. +-+....+++|+|+|-++.||+|+.
T Consensus 70 ~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~-----------~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~ 138 (207)
T PF14681_consen 70 CIVPILRAGLPMLEGFREVFPDARVGHIGIQRD-----------EETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAI 138 (207)
T ss_dssp EEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEE-----------TTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHH
T ss_pred EEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEc-----------CCccceeeeHhhCCCCccCCEEEEEeccccchhhHH
Confidence 677788999999999888864 34433321110 0001111221 1123348899999999999999999
Q ss_pred HHHHHHHhcCCc
Q 031576 143 AAVRLLGRAHGG 154 (157)
Q Consensus 143 ~a~~~L~~~Ga~ 154 (157)
.+++.|++.|+.
T Consensus 139 ~ai~~L~~~G~~ 150 (207)
T PF14681_consen 139 AAIEILKEHGVP 150 (207)
T ss_dssp HHHHHHHHTTG-
T ss_pred HHHHHHHHcCCC
Confidence 999999999863
No 79
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=97.34 E-value=0.0018 Score=50.25 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=81.3
Q ss_pred HHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEee
Q 031576 14 LQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRK 93 (157)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk 93 (157)
+++-++.|+.+.++| +.++..+|-+++.+-+. +.++...+||+-..+...-|...|++|.+.+..+.-
T Consensus 131 mdlhqkeiqgff~~p--------vdnlraspfllqyiqe~----ipdyrnavivaksp~~akka~syaerlrlglavihg 198 (354)
T KOG1503|consen 131 MDLHQKEIQGFFSIP--------VDNLRASPFLLQYIQEE----IPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHG 198 (354)
T ss_pred ehhhhHhhcceeccc--------ccccccCHHHHHHHHHh----CccccceEEEecCcchhhHHHhHHHHHhhceeEeec
Confidence 444556666666666 55677888877665544 444455688888888888999999998877766543
Q ss_pred cCC-----------CCCccchhhhh--h------hccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 94 PNK-----------LPGEVISEAYV--L------EYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 94 ~~~-----------~~~~~~~~~~~--~------~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+.+ .|.++...... . ...+..+.+. +. ..|+--++|||+++.-.+..+|++.|++.||-
T Consensus 199 e~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvv-gd-vggriaimvddiiddvqsfvaaae~lkergay 276 (354)
T KOG1503|consen 199 EQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVV-GD-VGGRIAIMVDDIIDDVQSFVAAAEVLKERGAY 276 (354)
T ss_pred cccccccccccCCcCCCCccccccCccccCchhhcccCCCeEEE-ec-cCceEEEEehhhHHhHHHHHHHHHHHHhcCce
Confidence 221 01111110000 0 0000122222 22 47888999999999999999999999999985
No 80
>PF15610 PRTase_3: PRTase ComF-like
Probab=97.08 E-value=0.0082 Score=47.22 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=66.2
Q ss_pred hhcCHHHHHHHHHHHHHHhhcc------CCCEEEecCC--CccccHHH-----HHHHh-------CCC-EEEEeecCCCC
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDM------GISVVAGIEA--RGFVFGPS-----IALAI-------GAK-FVPLRKPNKLP 98 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~------~~d~Vv~v~~--~G~~~a~~-----la~~l-------~~p-~~~~rk~~~~~ 98 (157)
-++|...++..|+.|++.+-.. .-|.||.++. +-+|-|+- +-+.| |.| +..++-.+..+
T Consensus 28 KfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~Sp~~~IPTAsn~L~~~Fv~~LNr~L~~~~~~~~~~~ki~R~~t 107 (274)
T PF15610_consen 28 KFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPSPYRSIPTASNVLCDHFVKELNRHLAHNGAPPVIEVKIHRNQT 107 (274)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecCccccCccHHHHHHHHHHHHHHHHHHHcCCCcceEeeeccccC
Confidence 5689999999999988765321 3354555443 66554432 22333 233 33332222111
Q ss_pred ----Cccchhhhhhh-ccccceeeecCCCCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 99 ----GEVISEAYVLE-YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 99 ----~~~~~~~~~~~-~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
....+...+.. ...+.+.+.+.. ..|+.||++|||-.||++=..+.+.+++.|++
T Consensus 108 y~~DYg~Ls~edR~~li~nd~y~ID~~~-l~gk~lIflDDIkITGshE~~V~~~~~~~~~~ 167 (274)
T PF15610_consen 108 YCEDYGNLSFEDRKSLISNDTYHIDKEF-LSGKHLIFLDDIKITGSHEDKVRKILKEYGLE 167 (274)
T ss_pred cccccccCCHHhhhccccCCceEecHHH-hCCcEEEEeccEEecCcHHHHHHHHHHHcCcc
Confidence 01111111111 112345555434 49999999999999999999999999999875
No 81
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0046 Score=46.94 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=50.8
Q ss_pred EEEecCCCccccHHHHHHHhC-CCEEEEe-ecCCCCCccchhhhhhhccccceee-ecCCCCCCCEEEEEeccccchHHH
Q 031576 65 VVAGIEARGFVFGPSIALAIG-AKFVPLR-KPNKLPGEVISEAYVLEYGTDRLEM-HVGAIEPGERALVIDDLVATGGTL 141 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~-~p~~~~r-k~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~gk~VLlVDDvitTG~Tl 141 (157)
++|++-+.|..+...+.+.+- .+.-.+- .+.+.. .+...+. +.+...+++.|+|+|=.+.||+|+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet------------~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~ 140 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEET------------LEPVLYYEKLPEDIDERTVIVLDPMLATGGSA 140 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCcc------------CceehhHHhCCCcccCCeEEEECchhhccHhH
Confidence 567788999999999988853 2222221 111100 0111111 112345899999999999999999
Q ss_pred HHHHHHHHhc-CCc
Q 031576 142 SAAVRLLGRA-HGG 154 (157)
Q Consensus 142 ~~a~~~L~~~-Ga~ 154 (157)
..|++.|++. |++
T Consensus 141 i~ai~~L~~~G~~~ 154 (210)
T COG0035 141 IAAIDLLKKRGGPK 154 (210)
T ss_pred HHHHHHHHHhCCCc
Confidence 9999999999 443
No 82
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=92.45 E-value=0.22 Score=37.79 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+-.++|||.=-++.||+|+..|++.|+++|..
T Consensus 187 I~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp 218 (267)
T KOG1017|consen 187 ITSRRVLLMYPIISTGNTVCKAVEVLKEHGVP 218 (267)
T ss_pred ccceeEEEEeeeecCCccHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999964
No 83
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=91.26 E-value=0.58 Score=36.56 Aligned_cols=107 Identities=14% Similarity=0.138 Sum_probs=62.1
Q ss_pred CcEEEehHhhhcCHHHHHHHHHHHHHHhhc--cCCCE--EEecCCCc-cccHHHHHHHhCCCEEEEeecCCCCCccchhh
Q 031576 31 GIMFQDITTLLLDHKAFKDTVDIFVDRYRD--MGISV--VAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 105 (157)
Q Consensus 31 ~~~~~d~~~l~~~~~~~~~l~~~la~~~~~--~~~d~--Vv~v~~~G-~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~ 105 (157)
.++|.|+... ..+..+..++..++..+-+ ..+|+ +++++..| ..-+...|+..+++.+.-+... .-....
T Consensus 62 ~di~~df~~~-~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~----~g~~rk 136 (261)
T KOG1377|consen 62 SDIFFDFSLF-NSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGII----KGLNRK 136 (261)
T ss_pred Cceeeccccc-ccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHH----HHHhhh
Confidence 3577777644 3788888888888876643 36899 99999877 4555666777776543222100 000000
Q ss_pred hhhhccccceeeecCCCCCCCEEEEEeccccchHHHHHH
Q 031576 106 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAA 144 (157)
Q Consensus 106 ~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~Tl~~a 144 (157)
.-+.++++..-+- .-..+|++|+.||+.++|.-+++.
T Consensus 137 ~~k~~~egG~lll--Aems~kg~L~~~dy~ea~~aI~ee 173 (261)
T KOG1377|consen 137 LLKDHGEGGVLLL--AELSSKGSLITGDYTEAATAIAEE 173 (261)
T ss_pred ccccCCCCceEEE--EEeccCCceeehhHHHHHHHHHHh
Confidence 0111222222111 113788899999977776666665
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=89.26 E-value=4.4 Score=27.83 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=39.9
Q ss_pred CccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc--hH--HHHHHHHH
Q 031576 72 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GG--TLSAAVRL 147 (157)
Q Consensus 72 ~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT--G~--Tl~~a~~~ 147 (157)
+.-.+|..+|+.||.++..+..++. ..|+ .+++.....+|++|+||=..... -. -+..++++
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F------------~dGE--~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a 73 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRF------------PDGE--TYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDA 73 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE-------------TTS---EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEc------------CCCC--EEEEecccccCCceEEEEecCCchhHHHHHHHHHHHH
Confidence 3458999999999999876543221 1122 33332334589999999888865 22 24456778
Q ss_pred HHhcCCcc
Q 031576 148 LGRAHGGR 155 (157)
Q Consensus 148 L~~~Ga~v 155 (157)
++.+||+.
T Consensus 74 ~r~~~a~~ 81 (116)
T PF13793_consen 74 LRRAGAKR 81 (116)
T ss_dssp HHHTTBSE
T ss_pred HHHcCCcE
Confidence 88888764
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=83.28 E-value=8.7 Score=31.33 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hHH--
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT-- 140 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~T-- 140 (157)
++++-.-.+.-.+|..+|+.+|+++..+..++.. .| ..+++.....+|+.|+||-..... ...
T Consensus 21 ~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~Fp------------DG--E~~v~i~~~vrg~~V~ivqs~~~p~nd~l~ 86 (330)
T PRK02812 21 RLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFA------------DG--ELYVQIQESIRGCDVYLIQPTCAPVNDHLM 86 (330)
T ss_pred CEEEEECCCCHHHHHHHHHHhCCCceeeEEEECC------------CC--CEEEEeCCCCCCCEEEEECCCCCCccHHHH
Confidence 3444444556789999999999987655433211 12 233333333589999999885433 222
Q ss_pred -HHHHHHHHHhcCCcc
Q 031576 141 -LSAAVRLLGRAHGGR 155 (157)
Q Consensus 141 -l~~a~~~L~~~Ga~v 155 (157)
+..+++.++++||+.
T Consensus 87 eLll~~~alr~~ga~r 102 (330)
T PRK02812 87 ELLIMVDACRRASARQ 102 (330)
T ss_pred HHHHHHHHHHHhCCce
Confidence 456678888899874
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=81.24 E-value=13 Score=31.70 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=48.3
Q ss_pred CEEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hH---
Q 031576 64 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG--- 139 (157)
Q Consensus 64 d~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~--- 139 (157)
++++-.-.+.-.+|..+|..||+++..+..++... |+ ..++....++|+.|+||-..... -.
T Consensus 119 ~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpD------------GE--~~Vri~e~VrG~dV~IVqS~~~pvNd~Lm 184 (439)
T PTZ00145 119 NAILFSGSSNPLLSKNIADHLGTILGRVHLKRFAD------------GE--VSMQFLESIRGKDVYIIQPTCPPVNENLI 184 (439)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCC------------CC--EEEEECCCcCCCeEEEEecCCCCCcHHHH
Confidence 34444445556899999999999986554332111 22 33332333589999999875432 11
Q ss_pred HHHHHHHHHHhcCCccc
Q 031576 140 TLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 140 Tl~~a~~~L~~~Ga~vv 156 (157)
=+.-++++++.+||+.+
T Consensus 185 ELLllidAlr~agAkrI 201 (439)
T PTZ00145 185 ELLLMISTCRRASAKKI 201 (439)
T ss_pred HHHHHHHHHHHhccCeE
Confidence 23456677888888643
No 87
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=78.72 E-value=34 Score=28.09 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=61.3
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCEEEecCCCccc--cHHHHHHHhCCCEEEEeecCCC-CCccchhhhhhhccccceeee
Q 031576 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFV--FGPSIALAIGAKFVPLRKPNKL-PGEVISEAYVLEYGTDRLEMH 118 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~--~a~~la~~l~~p~~~~rk~~~~-~~~~~~~~~~~~~~~~~~~i~ 118 (157)
.+++.....-+.+-+.+ ..++|.|++++.||++ .--.+|..+|+|++..--.++- |.-.- ..|+++
T Consensus 76 p~g~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqM----------tTf~~~ 144 (357)
T COG3535 76 PNGDEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQM----------TTFYLH 144 (357)
T ss_pred CCcHHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEE----------EEEEEc
Confidence 34555555556665555 4589999999999983 3445677899999865322210 10000 012221
Q ss_pred c---C----CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 119 V---G----AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 119 ~---~----~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
. . ...+|..+++ -.++...+-+.+..+.-+.|+.
T Consensus 145 g~~~tPlvi~d~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~ 185 (357)
T COG3535 145 GLPATPLVICDERGNRVII--ETVSNKWAERIARAATVEMGGS 185 (357)
T ss_pred CCCCCceEEEecCCCEEEE--EeecchhHHHHHHHHHHHcCCe
Confidence 1 0 1135655555 8889999999998888888865
No 88
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=78.36 E-value=11 Score=30.29 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=41.9
Q ss_pred CccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEE-eccccc-h---HHHHHHHH
Q 031576 72 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVI-DDLVAT-G---GTLSAAVR 146 (157)
Q Consensus 72 ~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlV-DDvitT-G---~Tl~~a~~ 146 (157)
+.-.+|..+|+.+|.|+..+..++.. .|+ .+++......|+.|+|| -..... - -=+..+++
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~Fp------------dGE--~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~ 73 (308)
T TIGR01251 8 SNQELAQKVAKNLGLPLGDVEVKRFP------------DGE--LYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMID 73 (308)
T ss_pred CCHHHHHHHHHHhCCeeeeeEEEECC------------CCC--EEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHH
Confidence 33579999999999998765433211 122 22222233478899888 443211 1 12456678
Q ss_pred HHHhcCCcc
Q 031576 147 LLGRAHGGR 155 (157)
Q Consensus 147 ~L~~~Ga~v 155 (157)
.++++||+.
T Consensus 74 a~r~~ga~~ 82 (308)
T TIGR01251 74 ALKRASAKS 82 (308)
T ss_pred HHHHcCCCe
Confidence 888888864
No 89
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=78.27 E-value=13 Score=30.07 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchH----HHHHHHH
Q 031576 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVR 146 (157)
Q Consensus 71 ~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~----Tl~~a~~ 146 (157)
.+.-.+|..+|+.||+|+..+..++... |+ ..++.....+|+.|+||=....... =+.-+++
T Consensus 13 ~~~~~La~~ia~~lg~~l~~~~~~~Fpd------------GE--~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~ 78 (319)
T PRK04923 13 NANKPLAQSICKELGVRMGKALVTRFSD------------GE--VQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLID 78 (319)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CC--EEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 4445899999999999986554332111 22 2232233347888988855332211 2445567
Q ss_pred HHHhcCCcc
Q 031576 147 LLGRAHGGR 155 (157)
Q Consensus 147 ~L~~~Ga~v 155 (157)
.++.+||+.
T Consensus 79 alr~~~a~~ 87 (319)
T PRK04923 79 ALKRASAAS 87 (319)
T ss_pred HHHHcCCcE
Confidence 778888863
No 90
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=77.86 E-value=21 Score=28.94 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=44.4
Q ss_pred CCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc----hHHHHHHHH
Q 031576 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT----GGTLSAAVR 146 (157)
Q Consensus 71 ~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT----G~Tl~~a~~ 146 (157)
.+.-.+|..+|+.||+++..+..++... |+ .+++.....+|+.|+||-..... =--+.-+++
T Consensus 12 ~~~~~la~~ia~~lg~~l~~~~~~~Fpd------------GE--~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~ 77 (320)
T PRK02269 12 SSNKELAEKVAQEIGIELGKSSVRQFSD------------GE--IQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVD 77 (320)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCC------------CC--EEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHH
Confidence 4445899999999999886554332111 22 33332333589999998764321 112556778
Q ss_pred HHHhcCCcc
Q 031576 147 LLGRAHGGR 155 (157)
Q Consensus 147 ~L~~~Ga~v 155 (157)
.|+.+||+.
T Consensus 78 alr~~~a~~ 86 (320)
T PRK02269 78 ALKRASAES 86 (320)
T ss_pred HHHHhCCCe
Confidence 888888864
No 91
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=77.77 E-value=14 Score=29.69 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=43.3
Q ss_pred CccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hH---HHHHHHHH
Q 031576 72 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---TLSAAVRL 147 (157)
Q Consensus 72 ~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~---Tl~~a~~~ 147 (157)
+.-.+|..+|+.||.|+..+..++.. .|+ ..++.....+|++|+||=..... -. -+..+++.
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~Fp------------dGE--~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~a 73 (309)
T PRK01259 8 ANPELAEKIAKYLGIPLGKASVGRFS------------DGE--ISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDA 73 (309)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEECC------------CCC--EEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 34589999999999998654432211 122 33332333589999999664322 11 24567788
Q ss_pred HHhcCCcc
Q 031576 148 LGRAHGGR 155 (157)
Q Consensus 148 L~~~Ga~v 155 (157)
++++||+.
T Consensus 74 lr~~ga~~ 81 (309)
T PRK01259 74 LKRASAGR 81 (309)
T ss_pred HHHcCCce
Confidence 88999864
No 92
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=77.58 E-value=16 Score=29.00 Aligned_cols=70 Identities=10% Similarity=0.079 Sum_probs=43.3
Q ss_pred CccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchH---HHHHHHHHH
Q 031576 72 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRLL 148 (157)
Q Consensus 72 ~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~---Tl~~a~~~L 148 (157)
+.-.+|..+|+.+|+|+.....++.. .|+..+.+ .....|++|+|+-....-.. -+..+++.+
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~Fp------------dGE~~v~i--~~~v~g~~v~i~~~~~~~~d~l~ell~~~~al 72 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFP------------DGELYVRI--LGEIDGEDVVIISTTYPQDENLVELLLLIDAL 72 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECC------------CCCEEEEE--CCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 33579999999999998766543211 12222333 23358999988876432222 244567788
Q ss_pred HhcCCcc
Q 031576 149 GRAHGGR 155 (157)
Q Consensus 149 ~~~Ga~v 155 (157)
+++||+.
T Consensus 73 r~~ga~~ 79 (285)
T PRK00934 73 RDEGAKS 79 (285)
T ss_pred HHcCCCe
Confidence 8888864
No 93
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=77.45 E-value=13 Score=29.79 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=42.1
Q ss_pred ccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc--hHH--HHHHHHHHHh
Q 031576 75 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GGT--LSAAVRLLGR 150 (157)
Q Consensus 75 ~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT--G~T--l~~a~~~L~~ 150 (157)
.+|..+|+.+|+++..+..++.. .|+ ..++.....+|+.|+||-..... -.. +...++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~Fp------------dGE--~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFA------------DGE--IYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECC------------CCC--EEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 47899999999998655433211 122 22222233589999999886522 222 4556788888
Q ss_pred cCCcc
Q 031576 151 AHGGR 155 (157)
Q Consensus 151 ~Ga~v 155 (157)
+||+.
T Consensus 68 ~~a~~ 72 (302)
T PLN02369 68 ASAKR 72 (302)
T ss_pred cCCCe
Confidence 99874
No 94
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=77.22 E-value=21 Score=28.62 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=44.6
Q ss_pred CCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchH---HHHHHHHH
Q 031576 71 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRL 147 (157)
Q Consensus 71 ~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~---Tl~~a~~~ 147 (157)
.+.-.+|..+|+.||+|+..+...+.. .|+..+.+ ....+|+.|+||-....--. -+.-++++
T Consensus 9 ~~~~~la~~ia~~lg~~~~~~~~~~F~------------dGE~~v~i--~~~v~g~~V~ivqs~~~~n~~l~elll~~~a 74 (301)
T PRK07199 9 PGNEAAAGRLAAALGVEVGRIELHRFP------------DGESYVRL--DSPVAGRTVVLVCSLDRPDEKLLPLLFAAEA 74 (301)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECC------------CCCEEEEE--CCCCCCCEEEEECCCCCCcHHHHHHHHHHHH
Confidence 344589999999999998655433211 12222333 23358999999988554212 23456678
Q ss_pred HHhcCCcc
Q 031576 148 LGRAHGGR 155 (157)
Q Consensus 148 L~~~Ga~v 155 (157)
|+++||+.
T Consensus 75 lr~~~a~~ 82 (301)
T PRK07199 75 ARELGARR 82 (301)
T ss_pred HHHcCCCe
Confidence 88888864
No 95
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=76.40 E-value=17 Score=29.23 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=41.2
Q ss_pred cHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc--hHH--HHHHHHHHHhc
Q 031576 76 FGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GGT--LSAAVRLLGRA 151 (157)
Q Consensus 76 ~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT--G~T--l~~a~~~L~~~ 151 (157)
+|..+|+.+|+++.....++... | .+.++.....+|+.|+||--.... -.- +.-.++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~D------------G--E~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFAN------------G--EIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCC------------C--CEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57899999999886554332111 2 233333333589999998765432 222 45677888899
Q ss_pred CCcc
Q 031576 152 HGGR 155 (157)
Q Consensus 152 Ga~v 155 (157)
||+.
T Consensus 67 ~a~~ 70 (304)
T PRK03092 67 SAKR 70 (304)
T ss_pred CCCe
Confidence 9874
No 96
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.92 E-value=22 Score=28.99 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=47.1
Q ss_pred EEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hHH---
Q 031576 65 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT--- 140 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~T--- 140 (157)
+++-.-.+.-.+|..+|+.+|+|+..+..++.. .|+ .+++.....+|+.|+||=+.... -..
T Consensus 10 ~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~Fp------------dGE--~~v~i~~~vrg~dV~ivqs~~~p~nd~l~e 75 (332)
T PRK00553 10 HVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFA------------DGE--TYIRFDESVRNKDVVIFQSTCSPVNDSLME 75 (332)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECC------------CCC--EEEEECCCCCCCEEEEEcCCCCCCchHHHH
Confidence 333333445689999999999998755433211 122 33332333589999999775432 111
Q ss_pred HHHHHHHHHhcCCcc
Q 031576 141 LSAAVRLLGRAHGGR 155 (157)
Q Consensus 141 l~~a~~~L~~~Ga~v 155 (157)
+.-.++.++++||+.
T Consensus 76 Lll~~~alr~~~a~~ 90 (332)
T PRK00553 76 LLIAIDALKRGSAKS 90 (332)
T ss_pred HHHHHHHHHHcCCCe
Confidence 445677888888874
No 97
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=66.58 E-value=21 Score=28.98 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=44.4
Q ss_pred CccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchH----HHHHHHHH
Q 031576 72 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVRL 147 (157)
Q Consensus 72 ~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~----Tl~~a~~~ 147 (157)
+.-.+|..+|+.|++|+.....++. ..+.++++-..-++|+.|.|+........ -+.-.+++
T Consensus 12 s~~~La~~ia~~l~~~l~~~~~~rF--------------~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA 77 (314)
T COG0462 12 SNPELAEKIAKRLGIPLGKVEVKRF--------------PDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDA 77 (314)
T ss_pred CCHHHHHHHHHHhCCCcccceeEEc--------------CCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 3347999999999999875543321 11223333344468999998776555333 13345677
Q ss_pred HHhcCCccc
Q 031576 148 LGRAHGGRS 156 (157)
Q Consensus 148 L~~~Ga~vv 156 (157)
++.+||+.+
T Consensus 78 ~k~asA~~I 86 (314)
T COG0462 78 LKRASAKRI 86 (314)
T ss_pred HHhcCCceE
Confidence 888888643
No 98
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.03 E-value=61 Score=26.31 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=45.6
Q ss_pred EEEecCCCccccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hHH---
Q 031576 65 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT--- 140 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~T--- 140 (157)
+++-.-.+.-.+|..+|+.+|+++..+..++.. .|+ .+++.....+|+.|+||-..... -..
T Consensus 10 ~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~Fp------------dGE--~~v~i~~~v~g~dV~ii~s~~~~~nd~l~e 75 (323)
T PRK02458 10 IKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFS------------DGE--IMINIEESVRGDDIYIIQSTSFPVNDHLWE 75 (323)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECC------------CCC--EEEEecCCcCCCeEEEEecCCCCCchHHHH
Confidence 333334455689999999999998655433211 122 22322333589999998764322 112
Q ss_pred HHHHHHHHHhcCCcc
Q 031576 141 LSAAVRLLGRAHGGR 155 (157)
Q Consensus 141 l~~a~~~L~~~Ga~v 155 (157)
+...++.++++||+.
T Consensus 76 Lll~~~alr~~~a~~ 90 (323)
T PRK02458 76 LLIMIDACKRASANT 90 (323)
T ss_pred HHHHHHHHHHcCCce
Confidence 344567778888864
No 99
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=65.16 E-value=20 Score=25.85 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhccCCCEEEecC-CCccccHHHHHHHhCCCEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~-~~G~~~a~~la~~l~~p~~ 89 (157)
..++.|++.+++.++++|+... ..|-.++..+|.+||.|++
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCce
Confidence 4455555555555788877765 5677999999999999875
No 100
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=64.04 E-value=37 Score=27.71 Aligned_cols=79 Identities=9% Similarity=-0.046 Sum_probs=45.3
Q ss_pred EEEecCCCccccHHHHHHHh-CCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchHH--H
Q 031576 65 VVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGT--L 141 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l-~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~T--l 141 (157)
+++-.-...-.+|..+|+.+ |+|+..+..++... |+..+.+.....++|+.|+||=-....=.- +
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpD------------GE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmEL 84 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRKFPD------------GFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQ 84 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCC------------CCEEEEEcCCCCcCCCeEEEECCCCCChHHHHH
Confidence 44433445568999999996 89987665433111 222233332333589999888654332111 2
Q ss_pred HHHHHHHHhcCCcc
Q 031576 142 SAAVRLLGRAHGGR 155 (157)
Q Consensus 142 ~~a~~~L~~~Ga~v 155 (157)
.-+++.|+++||+.
T Consensus 85 Ll~~dAlr~~ga~~ 98 (326)
T PLN02297 85 LSVIYALPKLFVAS 98 (326)
T ss_pred HHHHHHHHHcCCCE
Confidence 34566777888864
No 101
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=63.92 E-value=18 Score=27.14 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhccCCCEEEecCCC----ccccHHHHHHHhCCCEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIEAR----GFVFGPSIALAIGAKFV 89 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~~~----G~~~a~~la~~l~~p~~ 89 (157)
..++.|++.++..++|+|+...+. |-.++..+|.+|+.+++
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lv 139 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQI 139 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCcc
Confidence 344455555544568988887654 78999999999999874
No 102
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=59.81 E-value=24 Score=27.79 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhccCCCEEEecC----CCccccHHHHHHHhCCCEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE----ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~----~~G~~~a~~la~~l~~p~~ 89 (157)
..+..|+..++..++|+|++=. ...-.....+|..||+|++
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCce
Confidence 3455566666555799888843 2233677899999999974
No 103
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=57.97 E-value=26 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccCCCEEEecC-CCccccHHHHHHHhCCCEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~-~~G~~~a~~la~~l~~p~~ 89 (157)
..++.|++.++..++|+|+... ..|-.++..+|.+|+.|++
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~v 119 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcc
Confidence 3445555555555788877765 5677999999999999875
No 104
>PRK12342 hypothetical protein; Provisional
Probab=56.47 E-value=28 Score=27.30 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHHHhhccCCCEEEecCC----CccccHHHHHHHhCCCEE
Q 031576 50 TVDIFVDRYRDMGISVVAGIEA----RGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~----~G~~~a~~la~~l~~p~~ 89 (157)
.+..|+..++...+|+|++=.. ..--.+..+|..||+|++
T Consensus 97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVI 140 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcE
Confidence 3455555555456998888542 223677899999999975
No 105
>PRK04195 replication factor C large subunit; Provisional
Probab=54.42 E-value=1.4e+02 Score=25.51 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=62.3
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhcc--CCCEEEecCCCcc-ccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhcccc
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTD 113 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~--~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~ 113 (157)
+..+..+....+.+..++..+.... ..-++.|+|-.|- .+|..+|+.++.+++.+.-........... .... .
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-~i~~---~ 88 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-VAGE---A 88 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-HHHH---h
Confidence 6778888888888888877655332 3346777776664 799999999998776553211000000000 0000 0
Q ss_pred ceeeecCCCC-CCCEEEEEecc--ccch---HHHHHHHHHHHhcCC
Q 031576 114 RLEMHVGAIE-PGERALVIDDL--VATG---GTLSAAVRLLGRAHG 153 (157)
Q Consensus 114 ~~~i~~~~~~-~gk~VLlVDDv--itTG---~Tl~~a~~~L~~~Ga 153 (157)
. ....+. .+++|||+||+ ++.. ..+.+..+.++..+.
T Consensus 89 -~--~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~ 131 (482)
T PRK04195 89 -A--TSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQ 131 (482)
T ss_pred -h--ccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCC
Confidence 0 001121 35789999987 3321 346667777765543
No 106
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=53.85 E-value=15 Score=26.27 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=26.7
Q ss_pred HHHHHHHHhhccCCCEEEecC-CCccccHHHHHHHhCCCEE
Q 031576 50 TVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~-~~G~~~a~~la~~l~~p~~ 89 (157)
.++.|++.++..++|+|+... ..|-.++..+|.+|+.|++
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLV 118 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCcc
Confidence 344444444445788777665 4666799999999999985
No 107
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=54 Score=24.36 Aligned_cols=31 Identities=10% Similarity=0.022 Sum_probs=23.1
Q ss_pred cCCCEEEecCCCcc--------ccHHHHHHHhCCCEEEE
Q 031576 61 MGISVVAGIEARGF--------VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 61 ~~~d~Vv~v~~~G~--------~~a~~la~~l~~p~~~~ 91 (157)
.+||+|++-...-+ ..|.++|+.+++|+.-.
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 37999988653332 57889999999998643
No 108
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=52.34 E-value=21 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=31.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCcccC
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
..|++|+||--=-........+.+.|+.+||.+.|
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g 115 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTG 115 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEE
Confidence 58999999997667888999999999999999864
No 109
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.94 E-value=26 Score=30.94 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHHHHHHhhccC----CC-EEEecCCCc-cccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCC
Q 031576 51 VDIFVDRYRDMG----IS-VVAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEP 124 (157)
Q Consensus 51 ~~~la~~~~~~~----~d-~Vv~v~~~G-~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (157)
+..++++.+..+ .. ++-|++..| -.+|..+|...+.||+-+-......+- +++....|-.+.|. ++...
T Consensus 523 G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~--sEsaKc~~i~k~F~---DAYkS 597 (744)
T KOG0741|consen 523 GKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL--SESAKCAHIKKIFE---DAYKS 597 (744)
T ss_pred HHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc--cHHHHHHHHHHHHH---HhhcC
Confidence 556666665431 11 455666666 489999999999999866433222111 11111112222221 33334
Q ss_pred CCEEEEEeccc
Q 031576 125 GERALVIDDLV 135 (157)
Q Consensus 125 gk~VLlVDDvi 135 (157)
--.|++|||+=
T Consensus 598 ~lsiivvDdiE 608 (744)
T KOG0741|consen 598 PLSIIVVDDIE 608 (744)
T ss_pred cceEEEEcchh
Confidence 45799999973
No 110
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=51.29 E-value=40 Score=29.99 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCcccc-HHHHHHHhCC--CEEE
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGA--KFVP 90 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~-a~~la~~l~~--p~~~ 90 (157)
.+..+.+.+.+.+...+||+++.++.-||++ -..-++..|+ |+++
T Consensus 294 ~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 294 KLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3344556666677677999999999999964 2234466675 7653
No 111
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=50.23 E-value=1.5e+02 Score=24.79 Aligned_cols=34 Identities=9% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCCCCCEEEEEecccc---------------chHHHH---HHHHHHHhcCCcc
Q 031576 121 AIEPGERALVIDDLVA---------------TGGTLS---AAVRLLGRAHGGR 155 (157)
Q Consensus 121 ~~~~gk~VLlVDDvit---------------TG~Tl~---~a~~~L~~~Ga~v 155 (157)
...+|+.|+||-.... .-..+. -++++++ +||+.
T Consensus 73 ~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~r 124 (382)
T PRK06827 73 ESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARR 124 (382)
T ss_pred CCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCe
Confidence 3358999999998642 122233 3778888 88863
No 112
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=49.18 E-value=36 Score=26.57 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=27.3
Q ss_pred hccCCCEEEecCCCc--cccHHHHHHHhCCCEEEEeec
Q 031576 59 RDMGISVVAGIEARG--FVFGPSIALAIGAKFVPLRKP 94 (157)
Q Consensus 59 ~~~~~d~Vv~v~~~G--~~~a~~la~~l~~p~~~~rk~ 94 (157)
+.+++|++|+=+.|| +.-=-..|+.+|+|++++++.
T Consensus 187 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 187 RQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 345889999999888 444446688899999888653
No 113
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=49.09 E-value=50 Score=27.16 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHHhhccCCCEEEecCCCccccHH-HHHHHhCCCEEEE
Q 031576 53 IFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 91 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~~~a~-~la~~l~~p~~~~ 91 (157)
.+.+.++..+||+|+++..-|+++.- .-|+.+++|+++.
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 34445556789999999988887432 2456789998764
No 114
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=48.30 E-value=75 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=36.1
Q ss_pred hhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
-..+|......++.|.+ ..++++|+++...+...+..++...++|++..
T Consensus 52 ~~~~p~~a~~~~~~li~---~~~v~~iiG~~~s~~~~~~~~~~~~~ip~i~~ 100 (347)
T cd06336 52 DKYDPAEAAANARRLVQ---QDGVKFILGPIGGGITAAQQITERNKVLLLTA 100 (347)
T ss_pred CCCCHHHHHHHHHHHHh---hcCceEEEeCCCCchhhhhhhhhhcCceEEec
Confidence 34678887777777664 33789999988777766577888889988743
No 115
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=47.05 E-value=39 Score=28.01 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHhhccCCCEEEecCCCc-cccHHHHHHHhCCCEEEEee
Q 031576 54 FVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAKFVPLRK 93 (157)
Q Consensus 54 la~~~~~~~~d~Vv~v~~~G-~~~a~~la~~l~~p~~~~rk 93 (157)
+.......++|+|+|+--|- +-.|..+|..+++||+.+-.
T Consensus 76 ~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT 116 (360)
T COG0371 76 LAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPT 116 (360)
T ss_pred HHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEecC
Confidence 33333334689999997655 47999999999999987643
No 116
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=45.01 E-value=77 Score=25.74 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=24.3
Q ss_pred HHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 56 DRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 56 ~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
+.+...++|+||.-. ....+..+|+.+|+|++..
T Consensus 86 ~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~ 119 (392)
T TIGR01426 86 EAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVISS 119 (392)
T ss_pred HHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEEE
Confidence 334445799997755 3456888899999998643
No 117
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=44.84 E-value=99 Score=24.45 Aligned_cols=115 Identities=10% Similarity=0.098 Sum_probs=61.7
Q ss_pred hhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHH-HHHHHhCCCEEEEeec-CCCCCccc-hhhhhhhcc--ccc
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPLRKP-NKLPGEVI-SEAYVLEYG--TDR 114 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~-~la~~l~~p~~~~rk~-~~~~~~~~-~~~~~~~~~--~~~ 114 (157)
-..+|+.....++.|++. .++++|+++..++...|. .++...++|++..-.. ....+... .-.++.... ...
T Consensus 49 ~~~~p~~a~~~~~~li~~---~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~ 125 (333)
T cd06328 49 DAGNPEVAVSLARELIGD---DGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGRNSSQDA 125 (333)
T ss_pred CCCChHHHHHHHHHHHHh---cCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecCChHHHH
Confidence 346888888888877663 368899998888876543 5677789998753110 00000000 000000000 000
Q ss_pred eeeecCCCCCCCEEEEEeccccchHHH-HHHHHHHHhcCCcccC
Q 031576 115 LEMHVGAIEPGERALVIDDLVATGGTL-SAAVRLLGRAHGGRSC 157 (157)
Q Consensus 115 ~~i~~~~~~~gk~VLlVDDvitTG~Tl-~~a~~~L~~~Ga~vvg 157 (157)
..+..-....+++|.++.+=...|.++ ....+.+++.|.++++
T Consensus 126 ~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~ 169 (333)
T cd06328 126 IAAAAALGKPGKKIATLAQDYAFGRDGVAAFKAALEKLGAAIVT 169 (333)
T ss_pred HHHHHHHHhcCCeEEEEecCccccHHHHHHHHHHHHhCCCEEee
Confidence 000000001267777776666666665 4455778888988763
No 118
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=44.57 E-value=11 Score=28.74 Aligned_cols=12 Identities=58% Similarity=0.689 Sum_probs=10.2
Q ss_pred eccccchHHHHH
Q 031576 132 DDLVATGGTLSA 143 (157)
Q Consensus 132 DDvitTG~Tl~~ 143 (157)
=|++.||+|+++
T Consensus 149 vDiv~TG~TLr~ 160 (204)
T PRK13584 149 VDIVQTGTTLKA 160 (204)
T ss_pred EEEECccHHHHH
Confidence 389999999875
No 119
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.05 E-value=92 Score=21.11 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=42.5
Q ss_pred EEEecCCCc-cccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCC---CCCEEEEEeccccchHH
Q 031576 65 VVAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIE---PGERALVIDDLVATGGT 140 (157)
Q Consensus 65 ~Vv~v~~~G-~~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~gk~VLlVDDvitTG~T 140 (157)
+++|++--| -.++..+|+.++.++..+.-..........-.+... ....+...+.+. +...|+++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCCHH
Confidence 567777555 489999999999888765432211110000011111 112222223332 35689999999876666
Q ss_pred HHHHHHHHH
Q 031576 141 LSAAVRLLG 149 (157)
Q Consensus 141 l~~a~~~L~ 149 (157)
+.....-+-
T Consensus 81 v~~~L~~ll 89 (139)
T PF07728_consen 81 VLESLLSLL 89 (139)
T ss_dssp HHHTTHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
No 120
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=43.90 E-value=40 Score=20.50 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.+++.|+++++- |.....++..|++.|-.
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGT 76 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcc
Confidence 478889998886 77888889999988754
No 121
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.45 E-value=42 Score=20.67 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=24.7
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
..+++.|++++ .+|.....+...|++.|-.
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCC
Confidence 34788999998 5788888999999998865
No 122
>PRK04940 hypothetical protein; Provisional
Probab=43.07 E-value=92 Score=23.18 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=33.5
Q ss_pred cCHHH-HHHHHHHHHHHhhcc--CCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 42 LDHKA-FKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 42 ~~~~~-~~~l~~~la~~~~~~--~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
..|.. +..+-+.+++..... +..++||..-||| +|..+|...++|.+++.
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGy-yA~~La~~~g~~aVLiN 89 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGY-WAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHH-HHHHHHHHHCCCEEEEC
Confidence 44554 333444444333211 4579999999995 68999999999988764
No 123
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=42.21 E-value=8.7 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.6
Q ss_pred ccccchHHHHHHHHHHHhc
Q 031576 133 DLVATGGTLSAAVRLLGRA 151 (157)
Q Consensus 133 DvitTG~Tl~~a~~~L~~~ 151 (157)
.+.|.|.|+.++.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5789999999999998864
No 124
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=41.92 E-value=13 Score=28.54 Aligned_cols=11 Identities=64% Similarity=0.881 Sum_probs=9.8
Q ss_pred ccccchHHHHH
Q 031576 133 DLVATGGTLSA 143 (157)
Q Consensus 133 DvitTG~Tl~~ 143 (157)
|++.||+|+++
T Consensus 160 DivsTG~TLr~ 170 (215)
T PRK01686 160 DIVETGNTLRA 170 (215)
T ss_pred EeecChHHHHH
Confidence 89999999875
No 125
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=41.88 E-value=13 Score=27.22 Aligned_cols=11 Identities=64% Similarity=0.836 Sum_probs=9.8
Q ss_pred ccccchHHHHH
Q 031576 133 DLVATGGTLSA 143 (157)
Q Consensus 133 DvitTG~Tl~~ 143 (157)
|++.||+|+++
T Consensus 112 Div~TG~TLr~ 122 (163)
T PF01634_consen 112 DIVETGTTLRA 122 (163)
T ss_dssp EEESSSHHHHH
T ss_pred EeccCcHHHHH
Confidence 89999999875
No 126
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=41.67 E-value=89 Score=25.55 Aligned_cols=107 Identities=11% Similarity=-0.001 Sum_probs=54.8
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecC
Q 031576 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVG 120 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~ 120 (157)
.+-...+.+|+.|.+ ++-+|+|+..++. ..+..++..+++|++......... ..+...........-..+. .
T Consensus 48 dsf~~~~~~C~~~~~-----gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~-~~f~i~~~p~~~~a~~~~i-~ 120 (371)
T cd06388 48 NSFAVTNAFCSQYSR-----GVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGE-SQFVLQLRPSLRGALLSLL-D 120 (371)
T ss_pred ChhHHHHHHHHHHhC-----CceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCC-CceEEEeChhhhhHHHHHH-H
Confidence 334444455554433 6779999987765 677889999999998543210000 0000000000000000000 0
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
. ..-+++.++-|.-.-=+.+.+..+.+++.|.+++
T Consensus 121 ~-~~wk~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~ 155 (371)
T cd06388 121 H-YEWNRFVFLYDTDRGYSILQAIMEKAGQNGWQVS 155 (371)
T ss_pred h-cCceEEEEEecCCccHHHHHHHHHhhHhcCCeee
Confidence 1 2456777775532211447777787888886654
No 127
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=41.49 E-value=63 Score=26.86 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhccCCCEEEecCCCccc--cHHHHHHHhCCC
Q 031576 47 FKDTVDIFVDRYRDMGISVVAGIEARGFV--FGPSIALAIGAK 87 (157)
Q Consensus 47 ~~~l~~~la~~~~~~~~d~Vv~v~~~G~~--~a~~la~~l~~p 87 (157)
+..+.+.+.+.+...++|++|.++.-||+ +|. .++..+++
T Consensus 67 ~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak-~lk~~~~~ 108 (373)
T PF02684_consen 67 LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAK-KLKKRGIP 108 (373)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHH-HHHHhCCC
Confidence 33445556666667799999999999995 443 33456666
No 128
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=41.00 E-value=1.1e+02 Score=21.66 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=38.1
Q ss_pred ccHHHHHHHhCCCEEEEeecCCC-CCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccc-hHHHHHHHHHHHhcC
Q 031576 75 VFGPSIALAIGAKFVPLRKPNKL-PGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGTLSAAVRLLGRAH 152 (157)
Q Consensus 75 ~~a~~la~~l~~p~~~~rk~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitT-G~Tl~~a~~~L~~~G 152 (157)
.+|..+|+.++..+.-+.-.... +....-..+ .....+.+.+.++.+ ..+|+++|.+=.. =+|-.+..+++.+.-
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v-~~~~~~~f~~~~GPi--f~~ill~DEiNrappktQsAlLeam~Er~ 90 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGFPV-YDQETGEFEFRPGPI--FTNILLADEINRAPPKTQSALLEAMEERQ 90 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEEEE-EETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceeeee-eccCCCeeEeecChh--hhceeeecccccCCHHHHHHHHHHHHcCe
Confidence 67888999988877533221111 110000000 011224566666654 3569999999754 456666667766653
No 129
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.90 E-value=39 Score=21.27 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=24.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.+++.|+++.. +|.+...+...|+..|-.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 54 DRDRPVVVYCY---HGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCCCCEEEEeC---CCChHHHHHHHHHHcCCc
Confidence 47788999988 898999999999998864
No 130
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=40.23 E-value=50 Score=21.00 Aligned_cols=29 Identities=17% Similarity=-0.012 Sum_probs=22.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.++++|+++++ +|.....++..|+..|-.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGK 82 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCC
Confidence 36788999985 677777888888888864
No 131
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=39.93 E-value=1.9e+02 Score=22.87 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=34.6
Q ss_pred hcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccH-HHHHHHhCCCEEE
Q 031576 41 LLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVP 90 (157)
Q Consensus 41 ~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a-~~la~~l~~p~~~ 90 (157)
..+|+....+++.|.+ ..++++|+|.-..+...+ ..++...++|++.
T Consensus 49 ~~~p~~a~~~~~~Li~---~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 49 QSDNERYQQYAQRLAL---QDKVDVVWGGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCEEEeCcchHHHHHHHHHHHhcCceEEe
Confidence 3678887777777754 347899999987776444 5577788899875
No 132
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=39.59 E-value=68 Score=26.59 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=21.3
Q ss_pred CCCEEEecCCCccccHHHHHHHhCCCEEE
Q 031576 62 GISVVAGIEARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~~a~~la~~l~~p~~~ 90 (157)
++|+|+++ |||. ....|..+++|+++
T Consensus 93 ~p~~v~~~--Gg~v-~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 93 KGDLIVAV--GDIV-PLLFAWLSGKPYAF 118 (396)
T ss_pred cCCEEEEE--CcHH-HHHHHHHcCCCceE
Confidence 78988875 7887 67778888999877
No 133
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.53 E-value=32 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred EEEecCCCc-cccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIEARG-FVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~~~G-~~~a~~la~~l~~p~~~~ 91 (157)
+++||.-+| -.+|+.||+.|++||.+.
T Consensus 101 LLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 101 LLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 677777666 489999999999999875
No 134
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=96 Score=26.60 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=38.1
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhccCC-----------CEEEecCCCc-cccHHHHHHHhCCCEEEE
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDMGI-----------SVVAGIEARG-FVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~~~-----------d~Vv~v~~~G-~~~a~~la~~l~~p~~~~ 91 (157)
+..+..||+.=+.+.+.|.+.++..++ =++-|||-.| -.+.+++|..|+-.+..+
T Consensus 200 F~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 200 FETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 567888999999999988876553211 1566777555 367788888888665443
No 135
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=38.99 E-value=1.7e+02 Score=22.22 Aligned_cols=77 Identities=16% Similarity=0.297 Sum_probs=46.9
Q ss_pred CCCCCchhHHHHhhhcccCCCCCCCCcEEEeh-HhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHh
Q 031576 6 NGLRGDPRLQGISKAIRVVPDFPIPGIMFQDI-TTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI 84 (157)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l 84 (157)
.+|+++...++|...+..+|+.. |. --.+ ..+..|...++.+.+.|.++ + -.+|=--+.+-..|..+|+.+
T Consensus 69 ~~~~~~~i~~~l~~al~~vp~a~--Gv-nNhmGS~~T~~~~~m~~vl~~l~~~----g-l~FvDS~T~~~s~a~~~A~~~ 140 (213)
T PF04748_consen 69 TGMSEEEIRKRLEAALARVPGAV--GV-NNHMGSRFTSDREAMRWVLEVLKER----G-LFFVDSRTTPRSVAPQVAKEL 140 (213)
T ss_dssp TTS-HHHHHHHHHHHHCCSTT-S--EE-EEEE-CCHHC-HHHHHHHHHHHHHT----T--EEEE-S--TT-SHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHCCCcE--EE-ecCCCccccCCHHHHHHHHHHHHHc----C-CEEEeCCCCcccHHHHHHHHc
Confidence 46788888889999999998755 31 1112 23567788777777776653 2 245545567778999999999
Q ss_pred CCCEEE
Q 031576 85 GAKFVP 90 (157)
Q Consensus 85 ~~p~~~ 90 (157)
|+|+..
T Consensus 141 gvp~~~ 146 (213)
T PF04748_consen 141 GVPAAR 146 (213)
T ss_dssp T--EEE
T ss_pred CCCEEe
Confidence 999864
No 136
>COG3150 Predicted esterase [General function prediction only]
Probab=38.84 E-value=66 Score=24.05 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=33.3
Q ss_pred hhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
+-.+|..+-...+.+.....+.+ -.|||+.-||+ +|+.++...|++-+++
T Consensus 38 l~h~p~~a~~ele~~i~~~~~~~-p~ivGssLGGY-~At~l~~~~Girav~~ 87 (191)
T COG3150 38 LPHDPQQALKELEKAVQELGDES-PLIVGSSLGGY-YATWLGFLCGIRAVVF 87 (191)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-ceEEeecchHH-HHHHHHHHhCChhhhc
Confidence 44556544444444444444333 48999999995 6899999999886654
No 137
>PRK13583 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=38.70 E-value=14 Score=28.54 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=9.8
Q ss_pred ccccchHHHHH
Q 031576 133 DLVATGGTLSA 143 (157)
Q Consensus 133 DvitTG~Tl~~ 143 (157)
|++.||+|+++
T Consensus 177 DivsTG~TLr~ 187 (228)
T PRK13583 177 DITSTGETLRA 187 (228)
T ss_pred hhhchhHHHHH
Confidence 89999999875
No 138
>PF14502 HTH_41: Helix-turn-helix domain
Probab=38.66 E-value=32 Score=19.94 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHhcCCcc
Q 031576 136 ATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 136 tTG~Tl~~a~~~L~~~Ga~v 155 (157)
.+=+|+..|.+.|++.||..
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cchhHHHHHHHHHHHCCcEE
Confidence 34579999999999999864
No 139
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.37 E-value=61 Score=25.41 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=26.8
Q ss_pred hhccCCCEEEecCCCc---cccHHHHHHHhCCCEEEEeec
Q 031576 58 YRDMGISVVAGIEARG---FVFGPSIALAIGAKFVPLRKP 94 (157)
Q Consensus 58 ~~~~~~d~Vv~v~~~G---~~~a~~la~~l~~p~~~~rk~ 94 (157)
++.+++|++|+=+.|| +.-=-..|+.+|+|++++++.
T Consensus 193 ~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 193 LREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred HHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 3445899999998754 443446678899999888654
No 140
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=38.31 E-value=1.1e+02 Score=24.25 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhccCCCEEEecCCCcccc-HHHHHHHhCCCEEEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~~~G~~~-a~~la~~l~~p~~~~ 91 (157)
.+...+.+.+...++|+|++...+...+ +...|..+++|++..
T Consensus 75 ~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 75 GLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 3445555566666899999986544444 455667789998754
No 141
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=38.27 E-value=1.1e+02 Score=25.88 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=42.7
Q ss_pred EehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccH-HHHH---HHhCCCEEEEe
Q 031576 35 QDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIA---LAIGAKFVPLR 92 (157)
Q Consensus 35 ~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a-~~la---~~l~~p~~~~r 92 (157)
.|+..++.+++..+.+++.|..... +.|.|+.++-=|..++ ..++ ..+|.++..+-
T Consensus 191 ~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp 250 (422)
T PRK05329 191 VNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELP 250 (422)
T ss_pred HHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeC
Confidence 4667788888888888888877553 4589999998888887 4444 67999987664
No 142
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.19 E-value=80 Score=26.11 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhccCCCEEEecC---CCcc-----ccHHHHHHHhCCCEEEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE---ARGF-----VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~---~~G~-----~~a~~la~~l~~p~~~~ 91 (157)
...+.+.+.+++.++|++++=| .+.| .++..+.+.+++|.+..
T Consensus 67 ea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 67 EALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 4566677777777899877755 2333 57778888999998643
No 143
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=37.48 E-value=1.1e+02 Score=23.98 Aligned_cols=39 Identities=10% Similarity=-0.106 Sum_probs=25.9
Q ss_pred HHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE
Q 031576 52 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 52 ~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~ 90 (157)
..+.+.++..++|+|++.......++...+..+++|++.
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 344555666789999997543334455567778889864
No 144
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=37.29 E-value=16 Score=29.40 Aligned_cols=12 Identities=58% Similarity=0.725 Sum_probs=10.2
Q ss_pred eccccchHHHHH
Q 031576 132 DDLVATGGTLSA 143 (157)
Q Consensus 132 DDvitTG~Tl~~ 143 (157)
=|+++||+|+++
T Consensus 160 vDivsTG~TLka 171 (290)
T COG0040 160 VDIVSTGTTLKA 171 (290)
T ss_pred EEeecCCHhHHH
Confidence 389999999875
No 145
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=37.23 E-value=1.2e+02 Score=24.33 Aligned_cols=43 Identities=7% Similarity=-0.004 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhccCCCEEEecCCCcccc-HHHHHHHhCCCEEEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPL 91 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~~~G~~~-a~~la~~l~~p~~~~ 91 (157)
.+...+++.+...++|+|+.-..+.-.+ +...|..+++|++.+
T Consensus 73 ~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 73 NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 3345566666677899999985544444 556678889998754
No 146
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.84 E-value=1e+02 Score=22.89 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=31.1
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
.+|+..-...+.+.+...+.. .++||-..||| .|..+|..+++|.+.+.
T Consensus 40 ~~p~~a~~~l~~~i~~~~~~~-~~liGSSlGG~-~A~~La~~~~~~avLiN 88 (187)
T PF05728_consen 40 PFPEEAIAQLEQLIEELKPEN-VVLIGSSLGGF-YATYLAERYGLPAVLIN 88 (187)
T ss_pred cCHHHHHHHHHHHHHhCCCCC-eEEEEEChHHH-HHHHHHHHhCCCEEEEc
Confidence 445544333333333332222 59999999996 56789999999986653
No 147
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=36.69 E-value=50 Score=21.12 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.+++.|+++ +.+|.....+++.|++.|-.
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 467778876 66888888999999999865
No 148
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=36.50 E-value=26 Score=25.87 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=17.5
Q ss_pred EEecCCCcc-ccHHHHHHHhCCCEEEE
Q 031576 66 VAGIEARGF-VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 66 Vv~v~~~G~-~~a~~la~~l~~p~~~~ 91 (157)
+=|++.+|= .+|..|...+..|+..+
T Consensus 6 LNG~sSSGKSsia~~Lq~~~~~p~~~l 32 (174)
T PF07931_consen 6 LNGPSSSGKSSIARALQERLPEPWLHL 32 (174)
T ss_dssp EEE-TTSSHHHHHHHHHHHSSS-EEEE
T ss_pred EeCCCCCCHHHHHHHHHHhCcCCeEEE
Confidence 445666664 78889988888887654
No 149
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=36.03 E-value=18 Score=26.95 Aligned_cols=13 Identities=54% Similarity=0.703 Sum_probs=10.6
Q ss_pred EeccccchHHHHH
Q 031576 131 IDDLVATGGTLSA 143 (157)
Q Consensus 131 VDDvitTG~Tl~~ 143 (157)
|=|++.||+|+++
T Consensus 152 IvDiv~TG~TL~~ 164 (182)
T TIGR00070 152 IVDIVSTGTTLRE 164 (182)
T ss_pred EEEEeCCHHHHHH
Confidence 3379999999986
No 150
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=35.65 E-value=1.1e+02 Score=21.40 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhh--ccCCCEEEecCCCcc----ccHHHHHHHhCCCEEEEe
Q 031576 46 AFKDTVDIFVDRYR--DMGISVVAGIEARGF----VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 46 ~~~~l~~~la~~~~--~~~~d~Vv~v~~~G~----~~a~~la~~l~~p~~~~r 92 (157)
.+..+.+++.+.+. ..+..-++--++||| +++..++..++.|..++.
T Consensus 72 Gl~~Lv~~~~~~v~~~~~~~~~v~~n~TGGfK~~~~~~~~~g~~~~~~v~Yi~ 124 (136)
T PF09651_consen 72 GLRNLVRWVAEEVKNYKGRGYEVIFNATGGFKAEIAYLTLLGMLYGDPVYYIF 124 (136)
T ss_dssp HHHHHHHHTHHHHHHHHHTT-EEEEE-SSS-HHHHHHHHHHHHHT--EEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEeCCChHHHHHHHHHHHHHcCCCEEEEE
Confidence 34455555555554 223345667789998 688888888889988774
No 151
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=33.93 E-value=84 Score=24.70 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=47.7
Q ss_pred CCchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCE
Q 031576 9 RGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKF 88 (157)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~ 88 (157)
+.+...+.|.+.+..-|+|.....+-+|+..+...++..++ ..|.+.+...+. .+||+..+.-.. ...|..+|+|.
T Consensus 29 d~~~l~~~L~~ki~~aP~FF~~~PvVlDl~~l~~~~~~~dl--~~L~~~Lr~~gl-~~vGV~g~~~~~-~~~a~~~gL~~ 104 (248)
T PRK04596 29 DVPRLVQEMRERVTRAPKLFGRAAVILDFGGLSQVPDLATA--KALLDGLRSAGV-LPVALAYGTSEI-DLLSQQLGLPL 104 (248)
T ss_pred CHHHHHHHHHHHHHhChHhhCCCcEEEEchhhcCccccccH--HHHHHHHHHCCC-EEEEEeCCCHHH-HHHHHHCCCCc
Confidence 44566788999999999988777888999988644422221 113334444454 677776544322 24455567775
Q ss_pred EE
Q 031576 89 VP 90 (157)
Q Consensus 89 ~~ 90 (157)
..
T Consensus 105 l~ 106 (248)
T PRK04596 105 LA 106 (248)
T ss_pred cc
Confidence 43
No 152
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=33.67 E-value=97 Score=28.87 Aligned_cols=31 Identities=13% Similarity=-0.110 Sum_probs=22.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..|.+||+|||--.. ...+...|+..|+.++
T Consensus 687 l~g~~vLlvdD~~~~---r~~l~~~L~~~G~~v~ 717 (894)
T PRK10618 687 LDGVTVLLDITSEEV---RKIVTRQLENWGATCI 717 (894)
T ss_pred CCCCEEEEEeCCHHH---HHHHHHHHHHCCCEEE
Confidence 478899999998765 3445567888888764
No 153
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=32.75 E-value=40 Score=22.21 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=27.5
Q ss_pred CEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 126 ERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 126 k~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
..||+.++=+-+|++=++|...|+..|.+.
T Consensus 18 ~~ilVaG~nfG~GSSRE~A~~al~~~Gi~a 47 (91)
T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRA 47 (91)
T ss_pred CCEEEecCcccCCCcHHHHHHHHHHhCCCE
Confidence 469999999999999999999999999873
No 154
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=32.61 E-value=76 Score=25.86 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCCccccHH-HHHHHhCCCEEEE
Q 031576 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 91 (157)
Q Consensus 44 ~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~-~la~~l~~p~~~~ 91 (157)
...+..+...+.+.+...+||+|+..--+.-.+|. ..|..+++|++.+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hi 97 (346)
T PF02350_consen 49 AKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHI 97 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEe
Confidence 34444555556666766799999988777766664 4467789998765
No 155
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=32.58 E-value=2e+02 Score=23.85 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHhhccCCCEEEecCCCccccHHHH----HHHhCCCEEEEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEE
Q 031576 53 IFVDRYRDMGISVVAGIEARGFVFGPSI----ALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERA 128 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~~~a~~l----a~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~V 128 (157)
.+++.+++.+.|++|.--.-|-.-|+.+ |...|++|+-.-. ....+.. +.. ..| .+..-.
T Consensus 114 dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P-----~~ia~~p---~~a-~~f-------~e~glP 177 (351)
T TIGR03450 114 DVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALP-----VFIASDP---EWA-KKF-------TDAGVP 177 (351)
T ss_pred HHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccC-----ccccCCH---HHH-HHH-------HHCCCC
Confidence 4556666678999988766565444433 2345777764321 1111100 000 000 011123
Q ss_pred EEEecccc-chHHHHHH--HHHHHhcCCccc
Q 031576 129 LVIDDLVA-TGGTLSAA--VRLLGRAHGGRS 156 (157)
Q Consensus 129 LlVDDvit-TG~Tl~~a--~~~L~~~Ga~vv 156 (157)
++=||+-+ ||.|+.+. +++++..|.++.
T Consensus 178 i~GDD~Ksq~GaTi~h~vLa~lf~~Rgl~v~ 208 (351)
T TIGR03450 178 IVGDDIKSQVGATITHRVLAKLFEDRGVRLD 208 (351)
T ss_pred EecccccccCCCchHHHHHHHHHHHcCCcee
Confidence 44488875 89999776 788888887764
No 156
>PLN02199 shikimate kinase
Probab=32.55 E-value=1e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHhhccCCCEEEecCCCc-cccHHHHHHHhCCCEEEE
Q 031576 43 DHKAFKDTVDIFVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 43 ~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G-~~~a~~la~~l~~p~~~~ 91 (157)
|.+.++..++.++..+....+ +++|.+..| -.++..+|+.+|.|++..
T Consensus 85 de~~Lk~~a~~i~~~l~~~~I-~LIG~~GSGKSTVgr~LA~~Lg~~fIDt 133 (303)
T PLN02199 85 DEDILKRKAEEVKPYLNGRSM-YLVGMMGSGKTTVGKLMSKVLGYTFFDC 133 (303)
T ss_pred CHHHHHHHHHHHHHHcCCCEE-EEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 455677778887776655444 788888666 489999999999999854
No 157
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=32.53 E-value=55 Score=21.43 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.+..|++.+.-+-+|++=+.|...++..|.+.
T Consensus 14 ~~~~iiVaG~nfG~GSSRE~A~~al~~~Gi~a 45 (88)
T cd00404 14 AGPGVVIGDENYGTGSSREHAALELRLLGGRA 45 (88)
T ss_pred CCCEEEEecCCeecCCCHHHHHHHHHHhCCCE
Confidence 44679999999999999999999999999763
No 158
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=32.19 E-value=1.6e+02 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=27.2
Q ss_pred HHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 51 VDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 51 ~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
.+.+.+.+...++|+||+= ..+++...|+..++|++.+
T Consensus 83 ~~~~~~~l~~~~pDlVIsD---~~~~~~~aa~~~giP~i~i 120 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISD---FYPLAALAARRAGIPVIVI 120 (318)
T ss_pred HHHHHHHHHhcCCCEEEEc---ChHHHHHHHHhcCCCEEEE
Confidence 3444556666789999986 2455678889999998754
No 159
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=32.01 E-value=1.3e+02 Score=24.69 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.4
Q ss_pred HHHHHHHHhhccCCCEEEecCCCcccc--HHHHHHHh--CCCEEE
Q 031576 50 TVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAI--GAKFVP 90 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~~G~~~--a~~la~~l--~~p~~~ 90 (157)
+.+.+.+.. .+||+++.++.-||++ |..+ +.. |+|+++
T Consensus 66 ~~~~~~~~~--~~pd~~i~iD~p~Fnl~lak~~-k~~~~~i~viy 107 (347)
T PRK14089 66 AIKEMVELA--KQADKVLLMDSSSFNIPLAKKI-KKAYPKKEIIY 107 (347)
T ss_pred HHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHH-HhcCCCCCEEE
Confidence 333444443 4899999999999964 5544 455 688764
No 160
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.70 E-value=1.5e+02 Score=20.79 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=26.2
Q ss_pred HHHHHHhhccCCC-EEEecCC--Ccc---------ccHHHHHHHhCCCEEEEe
Q 031576 52 DIFVDRYRDMGIS-VVAGIEA--RGF---------VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 52 ~~la~~~~~~~~d-~Vv~v~~--~G~---------~~a~~la~~l~~p~~~~r 92 (157)
..|.+.+..++++ +|||.|. .|. .|+..|.+.+++|+.+.-
T Consensus 44 ~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~D 96 (138)
T PRK00109 44 DRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVD 96 (138)
T ss_pred HHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 4444444444554 7999883 333 678888888888877663
No 161
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=31.65 E-value=45 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.347 Sum_probs=25.3
Q ss_pred HHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEee
Q 031576 54 FVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRK 93 (157)
Q Consensus 54 la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~rk 93 (157)
+.+.+...+.|+|+++-.|-+ -++..+|..+++||+.+-.
T Consensus 67 ~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 67 LVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISVPT 107 (250)
T ss_dssp HHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEEES
T ss_pred HHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEecc
Confidence 334444457788888876655 7999999999999987743
No 162
>PRK13947 shikimate kinase; Provisional
Probab=31.24 E-value=48 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.8
Q ss_pred EEEecC-CCccccHHHHHHHhCCCEEE
Q 031576 65 VVAGIE-ARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 65 ~Vv~v~-~~G~~~a~~la~~l~~p~~~ 90 (157)
+++|++ .|+-.+|..+|+.|+.|++.
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id 31 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFID 31 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 567766 45568999999999999874
No 163
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=31.15 E-value=59 Score=25.14 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRA 151 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~ 151 (157)
+..|++|||+ +-|+|+++.++.|...
T Consensus 171 l~~Gk~VlI~----AHGNSlRaLiK~L~~i 196 (230)
T COG0588 171 LKSGKNVLIV----AHGNSLRALIKYLEGI 196 (230)
T ss_pred HhCCCeEEEE----ecchhHHHHHHHHhCC
Confidence 3589999986 6799999999999764
No 164
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=31.06 E-value=35 Score=24.87 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.3
Q ss_pred CCccccHHHHHHHhCCCEE
Q 031576 71 ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 71 ~~G~~~a~~la~~l~~p~~ 89 (157)
.||-.+|..||+.||.|+.
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~ 28 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYY 28 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE
T ss_pred CChHHHHHHHHHHcCCccC
Confidence 6888999999999999985
No 165
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=30.87 E-value=71 Score=27.95 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
.+..+...+.+.+.. .||+|+|--.-|=..|..+|..+|+|.+.+
T Consensus 386 fa~d~~~~i~~e~~~-~PdlI~GnYsDgnlvA~LLs~~lgv~~~~i 430 (550)
T PF00862_consen 386 FADDAEREILAELQG-KPDLIIGNYSDGNLVASLLSRKLGVTQCFI 430 (550)
T ss_dssp HHHHHHHHHHHHHTS---SEEEEEHHHHHHHHHHHHHHHT-EEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeccCcchHHHHHHHhhcCCceehh
Confidence 344444455444433 689999988777789999999999999765
No 166
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=30.82 E-value=1.3e+02 Score=24.28 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
..+.+++.+.+.++|.||++--|.. -.|..+|...++|++.+-
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~IP 108 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAIP 108 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEEc
Confidence 4455555555568999999986554 788888888899987664
No 167
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=30.80 E-value=1.6e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHHhhccCCCEEEecCCCccccH-HHHHHHhCCCEEEE
Q 031576 54 FVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVPL 91 (157)
Q Consensus 54 la~~~~~~~~d~Vv~v~~~G~~~a-~~la~~l~~p~~~~ 91 (157)
+.+.+...+||+|++....+++.. ...+...++|+++.
T Consensus 77 ~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 77 LKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 344555668999999875555432 23355679997654
No 168
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=30.57 E-value=89 Score=24.99 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=32.6
Q ss_pred cCH-HHHHHHHHHHHHHhhccCCCEEEecCCCcc----ccHHHHHHHhCCCEEEE
Q 031576 42 LDH-KAFKDTVDIFVDRYRDMGISVVAGIEARGF----VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 42 ~~~-~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~----~~a~~la~~l~~p~~~~ 91 (157)
.|| ..+..+++.|.. ..+.+|+|+...+. .....++..+++|++..
T Consensus 46 ~d~~~~~~~~~~~l~~----~~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is~ 96 (362)
T cd06367 46 TDPISLLLSVCDLLVV----QVVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVGI 96 (362)
T ss_pred CCHHHHHHHHHHHhcc----cceEEEEecCCCCccchhhhhhhhhhhhcCcEEEe
Confidence 566 444555655543 36788999988885 56788899999998753
No 169
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=30.04 E-value=93 Score=19.88 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
.+++.|+++++ +|.....++..|+..|.+
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFK 87 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCc
Confidence 46788999875 787777888889998864
No 170
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.03 E-value=1.3e+02 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 54 FVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 54 la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
+.+.+...++|.|+++--|.. -.|..+|..+++|++.+-
T Consensus 68 ~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VP 107 (347)
T cd08172 68 LAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITVP 107 (347)
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEec
Confidence 344444457899999976554 788888888899987663
No 171
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=29.60 E-value=1.4e+02 Score=21.01 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.9
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCEEEecCCCc-cccHHHHHHHhCCC
Q 031576 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARG-FVFGPSIALAIGAK 87 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G-~~~a~~la~~l~~p 87 (157)
.+++....+++.|++.+....+=++.|..-.| -.++..+++.++.+
T Consensus 3 ~s~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 3 PDEKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 57788888999999887554443455555444 47899999998864
No 172
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.56 E-value=1.1e+02 Score=23.82 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=26.5
Q ss_pred hhccCCCEEEecCCCccccHH--HHHHHhCCCEEEEeec
Q 031576 58 YRDMGISVVAGIEARGFVFGP--SIALAIGAKFVPLRKP 94 (157)
Q Consensus 58 ~~~~~~d~Vv~v~~~G~~~a~--~la~~l~~p~~~~rk~ 94 (157)
++.+++|++|+=+.||.-+.. ..|+.+|+|++++++.
T Consensus 190 ~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 228 (249)
T PF02571_consen 190 FRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRP 228 (249)
T ss_pred HHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 344588999999988763333 3467889999888653
No 173
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=29.35 E-value=83 Score=22.57 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=15.8
Q ss_pred CCEEEEEeccccchHHHHHHHHHH
Q 031576 125 GERALVIDDLVATGGTLSAAVRLL 148 (157)
Q Consensus 125 gk~VLlVDDvitTG~Tl~~a~~~L 148 (157)
.|...-+++.-.--..+..|.+..
T Consensus 124 ~k~~~~v~~~~~~~~~~~~A~~~a 147 (172)
T PF02776_consen 124 TKWSYRVTSPDDLPEALDRAFRAA 147 (172)
T ss_dssp SSEEEEECSGGGHHHHHHHHHHHH
T ss_pred cchhcccCCHHHHHHHHHHHHHHh
Confidence 355666666666666677776666
No 174
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=29.33 E-value=1.2e+02 Score=21.78 Aligned_cols=24 Identities=13% Similarity=-0.074 Sum_probs=12.6
Q ss_pred CEEEEEeccccchHHHHHHHHHHH
Q 031576 126 ERALVIDDLVATGGTLSAAVRLLG 149 (157)
Q Consensus 126 k~VLlVDDvitTG~Tl~~a~~~L~ 149 (157)
|...-|+|.-+.-..+..|.+...
T Consensus 123 k~~~~v~~~~~~~~~i~~A~~~a~ 146 (164)
T cd07039 123 VYNETVTSPEQLPELLDRAIRTAI 146 (164)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHh
Confidence 344555555555555555555444
No 175
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=29.28 E-value=69 Score=21.06 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=19.1
Q ss_pred CCCEEEEEeccccchHH-----HHHHHHHHHh
Q 031576 124 PGERALVIDDLVATGGT-----LSAAVRLLGR 150 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~T-----l~~a~~~L~~ 150 (157)
.|+.|+++||+-..-.. ....++++..
T Consensus 48 ~~q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 48 QGQPVVIIDDFGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred CCCcEEEEeecCccccccchHHHHHHHHHHhc
Confidence 59999999999877644 4555555443
No 176
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=28.57 E-value=1.4e+02 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 52 ~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
+.+.+.+.+.++|+||++--|.. -.|..+|...++|++.+-
T Consensus 68 ~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~iP 109 (339)
T cd08173 68 EKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISVP 109 (339)
T ss_pred HHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEec
Confidence 34444444457899999976554 788888888899987663
No 177
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=28.52 E-value=1.6e+02 Score=23.32 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccCCCEEEecC----CCccccHHHHHHHhCCCEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE----ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~----~~G~~~a~~la~~l~~p~~ 89 (157)
..+..|++.++..++|+|++=. ...=-.+..+|..||.|++
T Consensus 98 ~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 98 ATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQV 142 (260)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCcee
Confidence 4456666666666788777632 2222577899999999975
No 178
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.10 E-value=1.5e+02 Score=24.07 Aligned_cols=41 Identities=5% Similarity=-0.041 Sum_probs=30.6
Q ss_pred HHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 52 ~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
+.+++..+..++|.||++--|.. -.|..+|..+++|++.+-
T Consensus 68 ~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VP 109 (345)
T cd08171 68 ERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFP 109 (345)
T ss_pred HHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEec
Confidence 34445555568999999986654 788888888899987664
No 179
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=27.96 E-value=62 Score=24.52 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=30.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.++.+||+...=+-+|++=++|...|+.+|.+.
T Consensus 65 ~~~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~a 97 (200)
T PRK01641 65 YQGASILLAGDNFGCGSSREHAPWALADYGFRA 97 (200)
T ss_pred cCCCeEEEcCCcccCCCcHHHHHHHHHHcCCCE
Confidence 367789999999999999999999999999874
No 180
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=27.57 E-value=1.2e+02 Score=24.95 Aligned_cols=46 Identities=20% Similarity=0.077 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccc--cHHHHHHHhCCCEEEEe
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFV--FGPSIALAIGAKFVPLR 92 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~--~a~~la~~l~~p~~~~r 92 (157)
......+.|.++. ..+++.|++++-||.+ .+-.+|..+|+|++..-
T Consensus 76 e~~~a~~~le~~~-g~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDaD 123 (353)
T PF06032_consen 76 EALRAVEALEKYL-GRKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDAD 123 (353)
T ss_dssp HHHHHHHHHHHHT-T--EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB-
T ss_pred HHHHHHHHHHHhh-CCCccEEeehhcCccchhHHHHHHHHhCCCEEcCC
Confidence 3334444554544 3469999999999984 34445678999988653
No 181
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.55 E-value=1.7e+02 Score=23.65 Aligned_cols=33 Identities=30% Similarity=0.240 Sum_probs=23.1
Q ss_pred hhccCCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 58 YRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 58 ~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
+..+++|+|+.=.. ...+..+|+.+++|++...
T Consensus 100 ~~~~~pDlvi~d~~--~~~~~~~A~~~giP~v~~~ 132 (401)
T cd03784 100 ARDWGPDLVVADPL--AFAGAVAAEALGIPAVRLL 132 (401)
T ss_pred hcccCCCEEEeCcH--HHHHHHHHHHhCCCeEEee
Confidence 33468999988662 2345678899999987553
No 182
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=27.50 E-value=1.3e+02 Score=24.36 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 51 ~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
...+++.+.+.++|.||++--|.. -.|..+|..+++|++.+-
T Consensus 66 v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~VP 108 (349)
T cd08550 66 VVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIVP 108 (349)
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEeC
Confidence 344445555568899999976554 788889988899987664
No 183
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.47 E-value=1.6e+02 Score=24.02 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=31.7
Q ss_pred HHHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 50 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
..+.+++.+...++|.||++--|.. -.|..+|...++|++.+-
T Consensus 72 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IP 115 (366)
T PRK09423 72 EIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVP 115 (366)
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeC
Confidence 3445555555568899999986654 788888888899987663
No 184
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=27.46 E-value=40 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.7
Q ss_pred EEEEEeccccchHHHHHH
Q 031576 127 RALVIDDLVATGGTLSAA 144 (157)
Q Consensus 127 ~VLlVDDvitTG~Tl~~a 144 (157)
.=++|||+++|+.....-
T Consensus 40 ~~vlI~DilDtl~i~~~~ 57 (210)
T PF03192_consen 40 YPVLIDDILDTLHIYKKH 57 (210)
T ss_dssp S-BEEEEETTHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHH
Confidence 457899999998887743
No 185
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.43 E-value=1.6e+02 Score=23.00 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=33.6
Q ss_pred hhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccH--HHHHHHhCCCEEE
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG--PSIALAIGAKFVP 90 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a--~~la~~l~~p~~~ 90 (157)
-..+|......++.|... .++++|+|.-..+...| ..++...++|++.
T Consensus 48 ~~~~p~~a~~~a~~li~~---~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~ 97 (312)
T cd06346 48 TQTDPAAGVAAATKLVNV---DGVPGIVGAACSGVTIAALTSVAVPNGVVMIS 97 (312)
T ss_pred CCCCHHHHHHHHHHHHhh---cCCCEEEccccchhhHhhhhhhhccCCcEEEe
Confidence 346888877777777653 46889999876665443 4677778888874
No 186
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=27.41 E-value=2e+02 Score=22.80 Aligned_cols=39 Identities=18% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
.+.+.++..++|+|++........+...++..++|++..
T Consensus 82 ~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 82 QARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 344455566899999996443344556677788998654
No 187
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=27.35 E-value=1.5e+02 Score=19.77 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=27.4
Q ss_pred HHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhC-CCEEEE
Q 031576 53 IFVDRYRDMGISVVAGIEARGF-VFGPSIALAIG-AKFVPL 91 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~-~p~~~~ 91 (157)
.+.+.+...++|+|-+-...++ .++...+..++ +|++..
T Consensus 65 ~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 65 RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 5666677778999988776664 45555667777 787644
No 188
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.09 E-value=1.7e+02 Score=23.68 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 51 ~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
....++.++..++|.||++--|.. -.|..+|..+++|++.+-
T Consensus 66 v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIP 108 (351)
T cd08170 66 IERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIVP 108 (351)
T ss_pred HHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEeC
Confidence 445555555568999999986664 788888888899987663
No 189
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=26.98 E-value=33 Score=26.01 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=18.0
Q ss_pred EEEEEeccccchHHHHHHHHHHH
Q 031576 127 RALVIDDLVATGGTLSAAVRLLG 149 (157)
Q Consensus 127 ~VLlVDDvitTG~Tl~~a~~~L~ 149 (157)
+..=|||++..+.|..++.+.++
T Consensus 137 ~~~YvDDili~~~s~~e~~~~~~ 159 (213)
T cd01644 137 RNFYVDDILVSTDTLNEAVNVAK 159 (213)
T ss_pred HeeecccceecCCCHHHHHHHHH
Confidence 56889999999998866665544
No 190
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=26.91 E-value=66 Score=25.23 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=26.3
Q ss_pred ehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHh-C-CCEEEEe
Q 031576 36 DITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-G-AKFVPLR 92 (157)
Q Consensus 36 d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l-~-~p~~~~r 92 (157)
+..+...|+..+..+. +.+...++|+|+++.... +..+++++ + +|+++.-
T Consensus 37 ~~~~a~~d~~~~~~~~----~~l~~~~~DlIi~~gt~a---a~~~~~~~~~~iPVVf~~ 88 (294)
T PF04392_consen 37 EYKNAEGDPEKLRQIA----RKLKAQKPDLIIAIGTPA---AQALAKHLKDDIPVVFCG 88 (294)
T ss_dssp EEEE-TT-HHHHHHHH----HHHCCTS-SEEEEESHHH---HHHHHHH-SS-S-EEEEC
T ss_pred EEecCCCCHHHHHHHH----HHHhcCCCCEEEEeCcHH---HHHHHHhcCCCcEEEEEe
Confidence 3344456666544443 455667899999986533 44444444 4 7987654
No 191
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=26.64 E-value=2.2e+02 Score=19.69 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=25.8
Q ss_pred HHHHHHhhccCCC-EEEecCC--Ccc---------ccHHHHHHHhCCCEEEEe
Q 031576 52 DIFVDRYRDMGIS-VVAGIEA--RGF---------VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 52 ~~la~~~~~~~~d-~Vv~v~~--~G~---------~~a~~la~~l~~p~~~~r 92 (157)
..|.+.+..++++ +|||.|. .|- .|+..|...+++|+.+.-
T Consensus 38 ~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~D 90 (130)
T TIGR00250 38 SRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWD 90 (130)
T ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 3444444444444 7899873 332 677778777788887664
No 192
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=26.52 E-value=75 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.3
Q ss_pred CEEEEEeccccchHHHHHHHHHHHhc
Q 031576 126 ERALVIDDLVATGGTLSAAVRLLGRA 151 (157)
Q Consensus 126 k~VLlVDDvitTG~Tl~~a~~~L~~~ 151 (157)
..+.+++|...+=..+.++.+.+++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~ 37 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKEL 37 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 34777788999999999999999876
No 193
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=26.38 E-value=1.2e+02 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=24.4
Q ss_pred HhhccCCC-EEEecCCC--c---------cccHHHHHHHh-CCCEEEEe
Q 031576 57 RYRDMGIS-VVAGIEAR--G---------FVFGPSIALAI-GAKFVPLR 92 (157)
Q Consensus 57 ~~~~~~~d-~Vv~v~~~--G---------~~~a~~la~~l-~~p~~~~r 92 (157)
.+.+++++ +|||.|.. | -.|+..++..+ ++|+.+.-
T Consensus 46 li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~D 94 (135)
T PF03652_consen 46 LIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVD 94 (135)
T ss_dssp HHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEE
T ss_pred HHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 33334444 78998842 2 26888999998 99987664
No 194
>PLN02245 ATP phosphoribosyl transferase
Probab=26.31 E-value=32 Score=28.99 Aligned_cols=11 Identities=55% Similarity=0.803 Sum_probs=9.8
Q ss_pred ccccchHHHHH
Q 031576 133 DLVATGGTLSA 143 (157)
Q Consensus 133 DvitTG~Tl~~ 143 (157)
|++.||+||++
T Consensus 242 DIVsTGtTLra 252 (403)
T PLN02245 242 DLVSSGTTLRE 252 (403)
T ss_pred chhccHHHHHH
Confidence 89999999875
No 195
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=25.76 E-value=1.8e+02 Score=22.95 Aligned_cols=34 Identities=6% Similarity=-0.048 Sum_probs=24.9
Q ss_pred HHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 56 DRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 56 ~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
+.+...++|+|++- ++ +.+...|+.+++|.+.+.
T Consensus 87 ~~l~~~~pDlVi~d--~~-~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISD--FE-YSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEEC--Cc-hHHHHHHHhcCCCEEEEe
Confidence 45556689999987 33 444778899999998543
No 196
>PRK05177 minC septum formation inhibitor; Reviewed
Probab=25.33 E-value=92 Score=24.10 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCCCchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecC
Q 031576 7 GLRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIE 70 (157)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~ 70 (157)
..+-+..++.|.+.+..-|+|.....+.+|+..+..+......+.+.|.+ .+. .++++.
T Consensus 26 ~~~~~~l~~~L~~kl~~a~~FF~~apvvld~~~~~~~~~~~~~L~~~l~~----~gl-~~v~v~ 84 (239)
T PRK05177 26 EAPLDDWLARLDALIARSPGFFLGRPVVLDLAGLAIERSQLAALLAELEA----RGI-RILGIE 84 (239)
T ss_pred CCCHHHHHHHHHHHHHhChhhhCCCeEEEEeCCCCCCHHHHHHHHHHHHH----CCC-EEEEEe
Confidence 34556667788888888899887667788888876666656666666553 233 455553
No 197
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.28 E-value=2e+02 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=24.2
Q ss_pred hhccCCCEEEecCCCccc--cHHHHHHHhCCCEEEE
Q 031576 58 YRDMGISVVAGIEARGFV--FGPSIALAIGAKFVPL 91 (157)
Q Consensus 58 ~~~~~~d~Vv~v~~~G~~--~a~~la~~l~~p~~~~ 91 (157)
++..+||+|++ .||+. ++...|..+++|+.+.
T Consensus 87 ~~~~kPdvvi~--~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 87 IRKLKPDVIFS--KGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHhcCCCEEEe--cCchhhHHHHHHHHHcCCCEEEE
Confidence 45568999999 67763 4667788899998654
No 198
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.26 E-value=1.9e+02 Score=24.73 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCEEEecC---CCcc-----ccHHHHHHHhCCCEEEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE---ARGF-----VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~---~~G~-----~~a~~la~~l~~p~~~~ 91 (157)
...+.+.+.+++.++|++++=| .+.| .++..+.+.+++|.+..
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 63 EAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4556666777777899877655 3444 57777888899998643
No 199
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=25.15 E-value=1.5e+02 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccCCCEEEecC-CCccccHHHHHHHhCCCEE
Q 031576 48 KDTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFV 89 (157)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Vv~v~-~~G~~~a~~la~~l~~p~~ 89 (157)
...++.+++.++..++++|+-+. ..|-.+|..+|.+|+.+++
T Consensus 65 e~~~~al~~~i~~~~P~~vL~~~T~~Grdla~rlAarL~~gl~ 107 (312)
T PRK11916 65 ENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALV 107 (312)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcchHHHHHHHHHHhCCCcc
Confidence 34455566655555677666554 6888999999999998763
No 200
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.14 E-value=1.9e+02 Score=24.70 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCEEEecC---CCcc-----ccHHHHHHHhCCCEEEE
Q 031576 49 DTVDIFVDRYRDMGISVVAGIE---ARGF-----VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 49 ~l~~~la~~~~~~~~d~Vv~v~---~~G~-----~~a~~la~~l~~p~~~~ 91 (157)
...+.+.+.+++.++|++++=| .+.| .++..+.+.+++|.+..
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 63 EAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4556667777777899877655 3444 57777888899998643
No 201
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=25.12 E-value=1.9e+02 Score=23.03 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHhhccCCCEEEecCCCcc-ccHHHHHHHh--CCCEEEEe
Q 031576 53 IFVDRYRDMGISVVAGIEARGF-VFGPSIALAI--GAKFVPLR 92 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l--~~p~~~~r 92 (157)
.+++.+.+.++|.||++--|.. -.|..+|..+ ++|++.+-
T Consensus 69 ~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iP 111 (332)
T cd07766 69 EAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVP 111 (332)
T ss_pred HHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEe
Confidence 3334444457899999986554 6888888887 89987664
No 202
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=25.09 E-value=2.4e+02 Score=23.84 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHhhccC----CCEEEecCCCcc-ccHHHHHHHhC--CCEEEE
Q 031576 43 DHKAFKDTVDIFVDRYRDMG----ISVVAGIEARGF-VFGPSIALAIG--AKFVPL 91 (157)
Q Consensus 43 ~~~~~~~l~~~la~~~~~~~----~d~Vv~v~~~G~-~~a~~la~~l~--~p~~~~ 91 (157)
...-++.++-.+++.++..+ .=+++|+|..|= .+|..+|+.|| +||+..
T Consensus 28 GQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 28 GQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp S-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 45566777777777776532 237888887664 89999999998 688765
No 203
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=24.93 E-value=2.3e+02 Score=23.12 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCCCEEEecCCCccccH-HHHHHHhCCCEEEEe
Q 031576 48 KDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIALAIGAKFVPLR 92 (157)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a-~~la~~l~~p~~~~r 92 (157)
..+...+.+.+...+||+|+..-.+.-.+| ...|..+++|++.+.
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEE
Confidence 334444555566678999998876665555 455677899998553
No 204
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=24.73 E-value=88 Score=19.56 Aligned_cols=27 Identities=11% Similarity=-0.011 Sum_probs=17.9
Q ss_pred EEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
-|+.-.-+-...+..+|+.+++|.+.-
T Consensus 33 Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 33 GIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp EEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred EEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 344333333489999999999998754
No 205
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=24.70 E-value=70 Score=23.99 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=30.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.++.+||+...=.-+|+|=++|..+|+..|.+.
T Consensus 67 ~~~~~IlVaG~NFGcGSSREhA~~aL~~~Gi~a 99 (188)
T TIGR00171 67 YQGASILLARENFGCGSSREHAPWALDDYGFKV 99 (188)
T ss_pred cCCCcEEEcCCcccCCCcHHHHHHHHHHcCCCE
Confidence 367789999999999999999999999999874
No 206
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.70 E-value=2.1e+02 Score=22.36 Aligned_cols=38 Identities=16% Similarity=-0.043 Sum_probs=24.3
Q ss_pred HHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEE
Q 031576 53 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~ 90 (157)
.+.+.++..++|+|++........+...+...++|++.
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~ 117 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVI 117 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEE
Confidence 34444555689999986433233455667777899865
No 207
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=24.68 E-value=1.1e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=21.7
Q ss_pred EEEecCCCcc-ccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIEARGF-VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~~~G~-~~a~~la~~l~~p~~~~ 91 (157)
+|.|++..|= .+|..||+.+|.+++..
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 5788887774 89999999999987543
No 208
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.49 E-value=1.6e+02 Score=23.30 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=26.2
Q ss_pred ccCCCEEEecCCC---ccccHHHHHHHhCCCEEEEeec
Q 031576 60 DMGISVVAGIEAR---GFVFGPSIALAIGAKFVPLRKP 94 (157)
Q Consensus 60 ~~~~d~Vv~v~~~---G~~~a~~la~~l~~p~~~~rk~ 94 (157)
.+++|+||+=..| |+.-=...|..||+|++++.+.
T Consensus 194 q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 194 QYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 4589999998754 4444456688999999988654
No 209
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=24.46 E-value=1.8e+02 Score=23.42 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=22.8
Q ss_pred CCCEEEecCCCccc-cHHHHHHHhCCCEEEE
Q 031576 62 GISVVAGIEARGFV-FGPSIALAIGAKFVPL 91 (157)
Q Consensus 62 ~~d~Vv~v~~~G~~-~a~~la~~l~~p~~~~ 91 (157)
++.+|+|+..++.. .+..++..+++|++..
T Consensus 62 ~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~ 92 (382)
T cd06380 62 GVFAIFGSYDKSSVNTLTSYSDALHVPFITP 92 (382)
T ss_pred CcEEEEecCcHHHHHHHHHHHhcCCCCeEec
Confidence 67899998876653 4566788899998754
No 210
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=24.43 E-value=3.6e+02 Score=21.34 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCEEEecCCCccccHH-HHHHHhCCCEEEEeecCCCC-Cc-cchhhhhhhccccce--eee
Q 031576 44 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPLRKPNKLP-GE-VISEAYVLEYGTDRL--EMH 118 (157)
Q Consensus 44 ~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~-~la~~l~~p~~~~rk~~~~~-~~-~~~~~~~~~~~~~~~--~i~ 118 (157)
|......++.|.. .++++|+|+-..+...+. .++...++|++..-...... .+ .+............+ ++.
T Consensus 45 ~~~a~~~~~~li~----~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 120 (336)
T cd06339 45 AAGAAAAARQAVA----EGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYAR 120 (336)
T ss_pred cccHHHHHHHHHH----cCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHH
Confidence 4444444455443 368899998776654433 56667789987542111100 10 110000000000000 000
Q ss_pred cCCCCCCCEEEEEeccccchHHH-HHHHHHHHhcCCcccC
Q 031576 119 VGAIEPGERALVIDDLVATGGTL-SAAVRLLGRAHGGRSC 157 (157)
Q Consensus 119 ~~~~~~gk~VLlVDDvitTG~Tl-~~a~~~L~~~Ga~vvg 157 (157)
. ...++|.++-+=-..|..+ ....+.+++.|.++++
T Consensus 121 --~-~g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~ 157 (336)
T cd06339 121 --S-QGKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVA 157 (336)
T ss_pred --h-cCccceEEEecCChHHHHHHHHHHHHHHHcCCceee
Confidence 1 1346777775444455544 4556788888988763
No 211
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=23.89 E-value=1.9e+02 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=29.0
Q ss_pred HHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 52 ~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
+.+++.+.+.++|+|+++--|-. -.|..+|...++|++.+-
T Consensus 77 ~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IP 118 (350)
T PRK00843 77 EKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVP 118 (350)
T ss_pred HHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeC
Confidence 33444454457899999876554 688888888899987663
No 212
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.85 E-value=1.5e+02 Score=25.10 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=29.7
Q ss_pred hHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCcc
Q 031576 37 ITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGF 74 (157)
Q Consensus 37 ~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~ 74 (157)
++.+..+++..+.+++.+++++....--+.+-+|.+|+
T Consensus 307 vTlmRtt~eE~~~~g~~ia~kLn~~~gpv~v~lP~~G~ 344 (403)
T PF06792_consen 307 VTLMRTTPEENRQLGEFIAEKLNRAKGPVRVLLPLGGV 344 (403)
T ss_pred eeEeeCCHHHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 34456789999999999999997654447777888887
No 213
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=23.80 E-value=69 Score=26.79 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCCEE-------EEEeccccchHHHHHHHHHHHhcCC
Q 031576 124 PGERA-------LVIDDLVATGGTLSAAVRLLGRAHG 153 (157)
Q Consensus 124 ~gk~V-------LlVDDvitTG~Tl~~a~~~L~~~Ga 153 (157)
+|.+| |+|||.+.+-.--..++++|+..|+
T Consensus 139 rgh~i~~v~e~plVV~d~~e~~~KTK~av~~Lk~lg~ 175 (381)
T PTZ00428 139 RGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGA 175 (381)
T ss_pred ccccccccccCCEEEEcCcCCCCCHHHHHHHHHHcCC
Confidence 46666 7888888775667888999999886
No 214
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=23.80 E-value=90 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=28.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
++..||+..+=+-+|++=++|..+++..|.+.
T Consensus 47 ~~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~a 78 (163)
T PRK00439 47 KPGDIIVAGKNFGCGSSREHAPIALKAAGVSA 78 (163)
T ss_pred CCceEEEeCCcccCCccHHHHHHHHHHHCCCe
Confidence 45589999999999999999999999999763
No 215
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=23.79 E-value=32 Score=16.94 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=8.8
Q ss_pred CCEEEEEecc-ccch
Q 031576 125 GERALVIDDL-VATG 138 (157)
Q Consensus 125 gk~VLlVDDv-itTG 138 (157)
-.+++++|+- +-.|
T Consensus 6 H~K~~v~D~~~~~iG 20 (28)
T smart00155 6 HTKLMIVDDEIAYIG 20 (28)
T ss_pred EeEEEEEcCCEEEEe
Confidence 3578888883 4444
No 216
>PF14313 Soyouz_module: N-terminal region of Paramyxovirinae phosphoprotein (P); PDB: 2HYE_B 2B5L_D.
Probab=23.70 E-value=54 Score=19.77 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=10.9
Q ss_pred EeccccchHHHHHHHHHHHhcCCcccC
Q 031576 131 IDDLVATGGTLSAAVRLLGRAHGGRSC 157 (157)
Q Consensus 131 VDDvitTG~Tl~~a~~~L~~~Ga~vvg 157 (157)
|||++.+|.++..-+..-...+.+.+|
T Consensus 9 i~dlie~g~~vid~i~~a~~~~~~TlG 35 (58)
T PF14313_consen 9 IDDLIETGLDVIDSIQSAQGKPQSTLG 35 (58)
T ss_dssp SS---EE---HHHHHHHHHHSS---TS
T ss_pred HHHHHHhchHHHHHHHHCcCCCccccC
Confidence 578888888776666555555554443
No 217
>PHA02774 E1; Provisional
Probab=23.59 E-value=5.4e+02 Score=23.11 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=40.5
Q ss_pred CCCEEEecCCCcc-ccHHHHHHHhCCCEE-EEeecCCCCCccchhhhhhhccccceeeecCCCCCCCEEEEEeccccchH
Q 031576 62 GISVVAGIEARGF-VFGPSIALAIGAKFV-PLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG 139 (157)
Q Consensus 62 ~~d~Vv~v~~~G~-~~a~~la~~l~~p~~-~~rk~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~gk~VLlVDDvitTG~ 139 (157)
+.-++.|+|..|= .+|..++..++-..+ ++..+ ..|.+. . ..+.+|+++||. |+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~------------------s~FwLq--p-l~d~ki~vlDD~--t~~ 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK------------------SHFWLQ--P-LADAKIALLDDA--THP 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc------------------cccccc--h-hccCCEEEEecC--cch
Confidence 4558889997775 788888888763332 22211 123332 2 357889999999 555
Q ss_pred HHHHHHHHHHh
Q 031576 140 TLSAAVRLLGR 150 (157)
Q Consensus 140 Tl~~a~~~L~~ 150 (157)
.-...-..|+.
T Consensus 492 ~w~y~d~~Lrn 502 (613)
T PHA02774 492 CWDYIDTYLRN 502 (613)
T ss_pred HHHHHHHHHHH
Confidence 44444445554
No 218
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=23.44 E-value=1.4e+02 Score=20.24 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=23.1
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+.+++.|++.++ .+|.+-..+...|+..|-+
T Consensus 83 i~~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCA--RGGMRSQSLAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeC--CCCccHHHHHHHHHHcCCc
Confidence 346788999987 4566666777888888864
No 219
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=23.36 E-value=1.4e+02 Score=18.61 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=22.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCC
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHG 153 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga 153 (157)
..+++|+++.+ +|.....+...|+..|.
T Consensus 49 ~~~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 49 PKDKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred CCCCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 45678888864 58888888889998886
No 220
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=23.35 E-value=1.2e+02 Score=23.41 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEEeccccchHHHHHHHHHHHhcCC
Q 031576 120 GAIEPGERALVIDDLVATGGTLSAAVRLLGRAHG 153 (157)
Q Consensus 120 ~~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga 153 (157)
+....|++++++||++.--+-=...-++.+.+|.
T Consensus 88 gdynsgrhiilcdD~FY~kSMR~k~~ki~kd~Gc 121 (291)
T KOG4622|consen 88 GDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGC 121 (291)
T ss_pred CCcCCCceEEEechHHHHHHhhhHHHHHHHHcCC
Confidence 3456899999999998765444445555566664
No 221
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=56 Score=29.92 Aligned_cols=60 Identities=20% Similarity=0.486 Sum_probs=36.4
Q ss_pred CcEEEehHhhhcCHHHHHHHHHHHHH--Hhhcc------CCCEEEecCCCcc-ccHHHHHHHhCCCEEEE
Q 031576 31 GIMFQDITTLLLDHKAFKDTVDIFVD--RYRDM------GISVVAGIEARGF-VFGPSIALAIGAKFVPL 91 (157)
Q Consensus 31 ~~~~~d~~~l~~~~~~~~~l~~~la~--~~~~~------~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~ 91 (157)
++.|.|+..+=.-.+.+.++...|-. +|.+. .. +++|+|--|- .+|.++|-..|+||..+
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGv-LL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGV-LLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCce-EEECCCCCcHHHHHHHHhcccCCceeee
Confidence 46677765443223333344443331 22221 22 7888886665 89999999999999765
No 222
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.97 E-value=1.6e+02 Score=18.78 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=22.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+++.|+++++ +|.+...++..|+..|-+
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYE 92 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCc
Confidence 5788999865 688888889999999864
No 223
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=22.83 E-value=86 Score=26.51 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.+||+|++| -+|+|...++..|.+.|++|
T Consensus 173 ~~GKrV~VI----G~GaSA~di~~~l~~~ga~v 201 (443)
T COG2072 173 LRGKRVLVI----GAGASAVDIAPELAEVGASV 201 (443)
T ss_pred cCCCeEEEE----CCCccHHHHHHHHHhcCCee
Confidence 589999975 89999999999999998765
No 224
>PRK02399 hypothetical protein; Provisional
Probab=22.81 E-value=1.6e+02 Score=24.99 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=27.2
Q ss_pred hhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCcc
Q 031576 40 LLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGF 74 (157)
Q Consensus 40 l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~ 74 (157)
+..+++..+.+++++++++...+-.+-+-+|.+|+
T Consensus 311 mRTt~eE~~~~g~~ia~kLn~a~gpv~vllP~~G~ 345 (406)
T PRK02399 311 MRTTPEENRQIGRWIAEKLNRAKGPVAFLIPLGGV 345 (406)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 45578889999999999987654447777888886
No 225
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.78 E-value=84 Score=21.24 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=20.4
Q ss_pred EEEecC-CCccccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIE-ARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~-~~G~~~a~~la~~l~~p~~~~ 91 (157)
.|.|.+ .|+-.+|..||..+++|++..
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 456666 455689999999999998643
No 226
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=22.63 E-value=1.1e+02 Score=23.27 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=43.9
Q ss_pred CCCchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCC
Q 031576 8 LRGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAK 87 (157)
Q Consensus 8 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p 87 (157)
.+-+..++.|.+.+...|+|.....+-+|+..+.........+.+.|.+ ... .++++..+. +--...+..++.+
T Consensus 23 ~~~~~l~~~L~~kl~~a~~Ff~~~~vvld~~~~~~~~~~~~~L~~~l~~----~gl-~~~~v~~~~-~~~~~~a~~~gl~ 96 (221)
T PRK04804 23 SDLAAVAAELDEKLAQAPQFFAGAPLVVNLSAIQDGDIDFVALKELLES----RQL-IIVGITGAK-DKLQNQAKAAGLA 96 (221)
T ss_pred CCHHHHHHHHHHHHHhChhhhCCCEEEEEecCcCCCHHHHHHHHHHHHH----CCC-EEEEEECCC-HHHHHHHHHcCCC
Confidence 4455667788888888899887667778888776555455555555543 332 455554332 1112344445554
Q ss_pred E
Q 031576 88 F 88 (157)
Q Consensus 88 ~ 88 (157)
.
T Consensus 97 ~ 97 (221)
T PRK04804 97 I 97 (221)
T ss_pred c
Confidence 3
No 227
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=22.36 E-value=3e+02 Score=19.72 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=18.5
Q ss_pred EEEecCCCcc----ccHHHHHHHhC-CCEEEEe
Q 031576 65 VVAGIEARGF----VFGPSIALAIG-AKFVPLR 92 (157)
Q Consensus 65 ~Vv~v~~~G~----~~a~~la~~l~-~p~~~~r 92 (157)
.++--++||| .++..++..++ .|+.++.
T Consensus 105 ~v~iNaTGGfK~e~~~~~l~g~~~ga~~vyYih 137 (149)
T TIGR02619 105 VVYIAATGGFKPESTFLVLAGSLAGALPVFYIH 137 (149)
T ss_pred eEEEEcCCCcchHHHHHHHHHHHhCCCcEEEEE
Confidence 4555567777 56667777777 7766554
No 228
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=22.34 E-value=78 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=25.3
Q ss_pred EEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 128 ALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 128 VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
|+++|=+++||++...|...|...|..
T Consensus 389 V~ll~p~~~tg~~~~~a~~~ll~~gv~ 415 (473)
T KOG4203|consen 389 VLLLDPVLATGNSAMMAIILLLDHGVP 415 (473)
T ss_pred eeeecchhhcchhHHHHHHHHHhCCCc
Confidence 999999999999999999999999843
No 229
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=1e+02 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.8
Q ss_pred EEEecCCCc-cccHHHHHHHhCCCEEEEe
Q 031576 65 VVAGIEARG-FVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 65 ~Vv~v~~~G-~~~a~~la~~l~~p~~~~r 92 (157)
+++|+.-.| -.+|+.||+.+++|++++-
T Consensus 230 LllGPtGsGKTllaqTLAr~ldVPfaIcD 258 (564)
T KOG0745|consen 230 LLLGPTGSGKTLLAQTLARVLDVPFAICD 258 (564)
T ss_pred EEECCCCCchhHHHHHHHHHhCCCeEEec
Confidence 667776655 4899999999999998864
No 230
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=22.05 E-value=1.2e+02 Score=23.27 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=31.2
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCEEEecCCCcccc-HHHHHHHhCCCEEEEe
Q 031576 42 LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAKFVPLR 92 (157)
Q Consensus 42 ~~~~~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~-a~~la~~l~~p~~~~r 92 (157)
.+|..+. ..+++.+...++.+|+|+...+... +..++..+++|++...
T Consensus 46 ~d~~~~~---~~~c~l~~~~~v~ai~G~~~s~~~~~v~~~~~~~~iP~is~~ 94 (328)
T cd06351 46 NDPFSLL---RAVCDLLVSQGVAAIFGPTSSESASAVQSICDALEIPHISIS 94 (328)
T ss_pred CChHHHH---HHHHHHHhccCcEEEECCCCHHHHHHHHHHhccCCCCeEEee
Confidence 4555432 2333333244788999998877644 4788899999998653
No 231
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.05 E-value=2.1e+02 Score=17.83 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEEe
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~r 92 (157)
.....+..+++.+...++.+.+-.....+.-.-.-|...|+||+++-
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEE
Confidence 34566777888777767777776644444444444667899997664
No 232
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.73 E-value=2.3e+02 Score=25.67 Aligned_cols=42 Identities=21% Similarity=0.071 Sum_probs=32.0
Q ss_pred HHHHHHHHhhccCCCEEEecCCCccccHHHHHHHhCCCEEEE
Q 031576 50 TVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 50 l~~~la~~~~~~~~d~Vv~v~~~G~~~a~~la~~l~~p~~~~ 91 (157)
....|.+.++..++|+|.+-..++..++...+..+++|+++.
T Consensus 388 ~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~ 429 (694)
T PRK15179 388 GTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVL 429 (694)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence 345566666667899999988888778887788888998653
No 233
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=3.3e+02 Score=22.49 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhc-----cCCCEEEecCC--------CccccHHHHHHHhCCCEEEEe
Q 031576 45 KAFKDTVDIFVDRYRD-----MGISVVAGIEA--------RGFVFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 45 ~~~~~l~~~la~~~~~-----~~~d~Vv~v~~--------~G~~~a~~la~~l~~p~~~~r 92 (157)
.-.+.+...+.+.+.+ .++|+|..... -|..+|..+|..+++|++-+.
T Consensus 49 ~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~Vn 109 (342)
T COG0533 49 HHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVN 109 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCEeecc
Confidence 3344455555544432 36788776543 345799999999999998764
No 234
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=21.67 E-value=81 Score=19.31 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.1
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+..|.+|+=|++.-.++.|..++.++++..+..
T Consensus 43 l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~ 75 (81)
T PF00595_consen 43 LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP 75 (81)
T ss_dssp SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence 568999999999999999999999999998753
No 235
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=21.53 E-value=1.2e+02 Score=24.52 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEeccccchHHHHHHHHHHHhcC
Q 031576 121 AIEPGERALVIDDLVATGGTLSAAVRLLGRAH 152 (157)
Q Consensus 121 ~~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~G 152 (157)
.+-.|.++|+||| +.|-=..++++.+-..|
T Consensus 198 NV~~g~r~Lv~D~--~~GLv~aav~eRmgg~G 227 (299)
T PF04189_consen 198 NVHAGGRVLVVDD--CGGLVVAAVAERMGGSG 227 (299)
T ss_pred CCCCCCeEEEEeC--CCChHHHHHHHHhCCCc
Confidence 3457999999999 66766666666554444
No 236
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.44 E-value=2.4e+02 Score=22.47 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.7
Q ss_pred EEEecC-CCccccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIE-ARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~-~~G~~~a~~la~~l~~p~~~~ 91 (157)
+++|.+ .|+-.+|..+|+.+|.|++..
T Consensus 137 ~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 137 ALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 555655 455689999999999998743
No 237
>PRK03482 phosphoglycerate mutase; Provisional
Probab=21.08 E-value=2.3e+02 Score=20.90 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCCEEEecC-CCccccHHHHHHHhCCCEEE
Q 031576 51 VDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 90 (157)
Q Consensus 51 ~~~la~~~~~~~~d~Vv~v~-~~G~~~a~~la~~l~~p~~~ 90 (157)
++.+++.+...++|.|++-| .|..--|..++..+++|+..
T Consensus 36 A~~~~~~l~~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~~~~ 76 (215)
T PRK03482 36 AMQVAERAKELGITHIISSDLGRTRRTAEIIAQACGCDIIF 76 (215)
T ss_pred HHHHHHHHhcCCCCEEEECCcHHHHHHHHHHHHhcCCCeeE
Confidence 55566666555678776655 67778888888888888643
No 238
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=21.04 E-value=1.6e+02 Score=18.78 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhcCCc
Q 031576 124 PGERALVIDDLVATGGTLSAAVRLLGRAHGG 154 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~ 154 (157)
+++.|+++++ +|.....++..|.+.|-.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFE 84 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCc
Confidence 4788999875 587788888888888864
No 239
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.00 E-value=2.3e+02 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=23.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..|++|.|. ..+......++.|.+.|..++
T Consensus 297 l~gk~v~i~----~~~~~~~~l~~~L~e~G~~v~ 326 (428)
T cd01965 297 LGGKRVAIA----GDPDLLLGLSRFLLEMGAEPV 326 (428)
T ss_pred hcCCEEEEE----cChHHHHHHHHHHHHcCCcce
Confidence 589999876 455567778899999998875
No 240
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=20.90 E-value=2e+02 Score=22.23 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=27.1
Q ss_pred CCCCCEEEEEeccccchHHHHHHHHHHHhcCCccc
Q 031576 122 IEPGERALVIDDLVATGGTLSAAVRLLGRAHGGRS 156 (157)
Q Consensus 122 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~vv 156 (157)
..+|+.++|++.--+.-..+..+.++++..|++++
T Consensus 120 lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~ 154 (258)
T PF02153_consen 120 LFEGRNWILCPGEDTDPEALELVEELWEALGARVV 154 (258)
T ss_dssp TTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEE
T ss_pred ccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEE
Confidence 45899999997776666788889999999998864
No 241
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=20.77 E-value=1.2e+02 Score=19.84 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhcCCcc
Q 031576 123 EPGERALVIDDLVATGGTLSAAVRLLGRAHGGR 155 (157)
Q Consensus 123 ~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga~v 155 (157)
.+|++|||| -.|.....-++.|.+.||++
T Consensus 5 l~~~~vlVv----GgG~va~~k~~~Ll~~gA~v 33 (103)
T PF13241_consen 5 LKGKRVLVV----GGGPVAARKARLLLEAGAKV 33 (103)
T ss_dssp -TT-EEEEE----EESHHHHHHHHHHCCCTBEE
T ss_pred cCCCEEEEE----CCCHHHHHHHHHHHhCCCEE
Confidence 478888875 55888888888888888875
No 242
>PRK13946 shikimate kinase; Provisional
Probab=20.50 E-value=90 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEecC-CCccccHHHHHHHhCCCEEEE
Q 031576 65 VVAGIE-ARGFVFGPSIALAIGAKFVPL 91 (157)
Q Consensus 65 ~Vv~v~-~~G~~~a~~la~~l~~p~~~~ 91 (157)
+++|++ .|+-.+|..||+.||.|++..
T Consensus 14 ~l~G~~GsGKsti~~~LA~~Lg~~~id~ 41 (184)
T PRK13946 14 VLVGLMGAGKSTVGRRLATMLGLPFLDA 41 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeECc
Confidence 566766 455699999999999998754
No 243
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.41 E-value=2.6e+02 Score=22.77 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHhhccCCCEEEecCCCcc-ccHHHHHHHh
Q 031576 53 IFVDRYRDMGISVVAGIEARGF-VFGPSIALAI 84 (157)
Q Consensus 53 ~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l 84 (157)
.+++.++..++|.||++--|.. -.|..+|..+
T Consensus 71 ~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 71 AAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred HHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 3444444557899999976554 6777887766
No 244
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.41 E-value=1.7e+02 Score=25.69 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEee
Q 031576 51 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLRK 93 (157)
Q Consensus 51 ~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~rk 93 (157)
++.+++.+..+.+|.|.|+|-+.+ ++-..+-+. ++.++.+|.
T Consensus 5 a~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RH 47 (550)
T COG0028 5 AEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRH 47 (550)
T ss_pred HHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEecc
Confidence 567777777788999999886554 444444444 555555544
No 245
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=20.35 E-value=83 Score=22.94 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=16.0
Q ss_pred EEEEeccccchHHHHHHHHH
Q 031576 128 ALVIDDLVATGGTLSAAVRL 147 (157)
Q Consensus 128 VLlVDDvitTG~Tl~~a~~~ 147 (157)
=+|+|=..-||+|+.+|.++
T Consensus 193 diVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHT
T ss_pred eeeehhhhccChHHHHHHHc
Confidence 46799999999999999874
No 246
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.20 E-value=55 Score=24.45 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.0
Q ss_pred CCCCEEEEEecccc-chHHHHHHHHHH
Q 031576 123 EPGERALVIDDLVA-TGGTLSAAVRLL 148 (157)
Q Consensus 123 ~~gk~VLlVDDvit-TG~Tl~~a~~~L 148 (157)
.+.+.|++++|+++ +|+-+....+..
T Consensus 128 L~~~Gi~~~Pd~~~NaGGv~~~~~e~~ 154 (200)
T cd01075 128 LHERGILYAPDYVVNAGGLINVADELY 154 (200)
T ss_pred HHHCCCEEeCceeeeCcCceeehhHHh
Confidence 35567999999999 776555444443
No 247
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=20.20 E-value=1.4e+02 Score=18.85 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=19.9
Q ss_pred CCCEEEEEeccccchHH--HHHHHHHHHhcCCc
Q 031576 124 PGERALVIDDLVATGGT--LSAAVRLLGRAHGG 154 (157)
Q Consensus 124 ~gk~VLlVDDvitTG~T--l~~a~~~L~~~Ga~ 154 (157)
+++.|+|+.+ +|.+ ...++..|++.|.+
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCcc
Confidence 4678888865 5533 56778888888864
No 248
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.17 E-value=1.6e+02 Score=21.02 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhccCCCEEEecCC
Q 031576 48 KDTVDIFVDRYRDMGISVVAGIEA 71 (157)
Q Consensus 48 ~~l~~~la~~~~~~~~d~Vv~v~~ 71 (157)
....+.|.+.+.+.+||+||+.-.
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsThp 98 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTHP 98 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCc
Confidence 344455666666779999999753
No 249
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=20.15 E-value=3.4e+02 Score=20.97 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCEEEEe
Q 031576 46 AFKDTVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPLR 92 (157)
Q Consensus 46 ~~~~l~~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~~~~r 92 (157)
.++.+.+.+...+....+=++.|++-.|- .+|..+|..+|.|+..+.
T Consensus 6 ~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~ 53 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 34455555555554434447788886664 899999999999987553
No 250
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.12 E-value=1.3e+02 Score=23.11 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHHHHhhccCCCEEEecCCCcc-ccHHHHHHHhCCCE
Q 031576 52 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKF 88 (157)
Q Consensus 52 ~~la~~~~~~~~d~Vv~v~~~G~-~~a~~la~~l~~p~ 88 (157)
++|..+++..+.+ |.+-.||| .++..++..||+|+
T Consensus 94 ~eLv~~L~~~~~~--v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 94 RELVSRLHARGTQ--VYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHHHHHHcCCe--EEEEcCChHHHHHHHHHHhCCcH
Confidence 4455555544443 33457888 79999999999998
No 251
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.11 E-value=5e+02 Score=21.47 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=40.1
Q ss_pred CCchhHHHHhhhcccC-CCCCC-CCcEEEehHhhhcCHHHHHHHHHHHHHHhhccCCCE-EEe----cCCCccccHHHHH
Q 031576 9 RGDPRLQGISKAIRVV-PDFPI-PGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISV-VAG----IEARGFVFGPSIA 81 (157)
Q Consensus 9 ~~~~~~~~l~~~~~~~-~~~~~-~~~~~~d~~~l~~~~~~~~~l~~~la~~~~~~~~d~-Vv~----v~~~G~~~a~~la 81 (157)
+..++|+.|.+..|.. |..|. |.-.+.-+......-.+-+ ++.+.+.. +.|- |++ -++||..+ .++
T Consensus 235 nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q--Ak~F~eav---~l~GiIlTKlDgtAKGG~il--~I~ 307 (340)
T COG0552 235 NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ--AKIFNEAV---GLDGIILTKLDGTAKGGIIL--SIA 307 (340)
T ss_pred CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH--HHHHHHhc---CCceEEEEecccCCCcceee--eHH
Confidence 4567888888888777 55543 2222322222332222211 22222222 3442 332 45788776 467
Q ss_pred HHhCCCEEEEe
Q 031576 82 LAIGAKFVPLR 92 (157)
Q Consensus 82 ~~l~~p~~~~r 92 (157)
+.+++|+.++-
T Consensus 308 ~~l~~PI~fiG 318 (340)
T COG0552 308 YELGIPIKFIG 318 (340)
T ss_pred HHhCCCEEEEe
Confidence 88899987663
No 252
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=20.11 E-value=48 Score=21.78 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCchhHHHHhhhcccCCCCCCCCcEEEehHhhhcCHHHHHHHHHHH
Q 031576 9 RGDPRLQGISKAIRVVPDFPIPGIMFQDITTLLLDHKAFKDTVDIF 54 (157)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~l~~~l 54 (157)
+.+...+.|.+++..-|+|......-+|+..+ .++.-...+...+
T Consensus 24 d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~l-~~~~dl~~L~~~l 68 (99)
T PF05209_consen 24 DLDELLQALDEKIAQAPDFFKNAPVVLDLSNL-PDELDLAALVELL 68 (99)
T ss_dssp -HHHHHHHHHHHHHHTHHHCTTTEEEEEEEEE-ETTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChHhHcCCCeEEehhhc-CChhhHHHHHHHH
Confidence 45566778888888889887766777888877 5555455544444
Done!