Query 031578
Match_columns 157
No_of_seqs 78 out of 80
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 02:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13259 DUF4050: Protein of u 100.0 5.4E-40 1.2E-44 249.2 6.6 113 41-157 1-122 (122)
2 PF07418 PCEMA1: Acidic phosph 51.5 6.4 0.00014 35.0 0.7 9 3-11 30-38 (282)
3 COG5208 HAP5 CCAAT-binding fac 38.0 17 0.00037 32.0 1.2 14 137-150 172-185 (286)
4 PLN00211 predicted protein; Pr 37.9 24 0.00051 25.0 1.7 13 139-151 29-41 (61)
5 PF04818 CTD_bind: RNA polymer 37.0 27 0.00058 23.0 1.8 17 141-157 48-64 (64)
6 PF09012 FeoC: FeoC like trans 32.0 40 0.00087 22.6 2.1 16 140-155 28-43 (69)
7 COG1709 Predicted transcriptio 31.3 33 0.00072 30.0 1.9 25 122-146 94-127 (241)
8 TIGR03487 cas_csp2 CRISPR-asso 29.5 30 0.00065 32.2 1.4 13 135-147 180-192 (489)
9 PRK07738 flagellar protein Fla 29.2 44 0.00096 25.9 2.1 22 135-156 91-112 (117)
10 PF06749 DUF1218: Protein of u 25.2 26 0.00055 25.6 0.2 10 1-11 16-25 (97)
11 PRK10610 chemotaxis regulatory 24.7 77 0.0017 20.1 2.3 28 128-155 102-129 (129)
12 PF14009 DUF4228: Domain of un 24.5 33 0.00071 25.6 0.7 9 1-9 1-9 (181)
13 cd03083 TRX_Fd_NuoE_hoxF TRX-l 24.5 34 0.00074 23.7 0.7 15 3-18 47-61 (80)
14 PF10653 Phage-A118_gp45: Prot 24.3 36 0.00079 23.9 0.8 20 130-149 28-52 (62)
15 PF10813 DUF2733: Protein of u 23.3 47 0.001 20.8 1.1 15 1-15 1-16 (32)
16 KOG4224 Armadillo repeat prote 23.2 36 0.00077 32.5 0.7 12 1-12 1-12 (550)
17 cd04096 eEF2_snRNP_like_C eEF2 22.8 36 0.00079 23.1 0.6 17 133-149 43-59 (80)
18 PF01062 Bestrophin: Bestrophi 22.4 63 0.0014 26.6 2.0 17 84-100 77-93 (293)
19 PRK00809 hypothetical protein; 22.2 57 0.0012 25.7 1.6 17 131-147 97-113 (144)
20 cd03737 SOCS_SOCS3 SOCS (suppr 21.8 64 0.0014 20.9 1.5 12 136-148 26-37 (42)
21 PRK08868 flagellar protein Fla 21.5 75 0.0016 25.7 2.2 23 134-156 115-140 (144)
22 PRK00889 adenylylsulfate kinas 21.0 1.5E+02 0.0033 22.3 3.7 33 124-156 131-174 (175)
23 KOG0178 20S proteasome, regula 20.4 76 0.0016 27.9 2.1 18 132-149 100-117 (249)
No 1
>PF13259 DUF4050: Protein of unknown function (DUF4050)
Probab=100.00 E-value=5.4e-40 Score=249.16 Aligned_cols=113 Identities=53% Similarity=0.939 Sum_probs=97.8
Q ss_pred cccccccccCcccccccccccCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhcCCcCCc-------ccccCC
Q 031578 41 WTTSTCDMDNSAVQSQGSISSLGTNNLIPDTNGGSGSASAPSEFVNHGFLLWNQTRQRWIGNKKAEN-------RTHQVR 113 (157)
Q Consensus 41 Wsss~~emdns~~~Sq~s~ssis~~n~~~d~~~~~~~~~~~~~FVNhGl~~W~q~R~qWvg~~~~~~-------~~~~~r 113 (157)
||||+++|||+++|+|+++++. ++..+.+........ ++||||||++|+++|++|||+++... +....|
T Consensus 1 ~s~s~~~~d~~~~~~~~~~s~~---~~~~~~~~~~~~~~~-~~~~N~Gl~lW~~rR~~W~~~~~~~~~~~~~l~~~~~~r 76 (122)
T PF13259_consen 1 WSSSPFRFDNSDAQSQRSISST---NSSSDCSKRRKSSEE-EEFVNHGLILWEQRRQQWTGPKKSNKIIEPRLQQSNSIR 76 (122)
T ss_pred CCCCcccCcChhhhhhhccccc---cchhhhhhhhccccC-ccceeHHHHHHHHHHHHHcCCCCcccccccccccccccc
Confidence 9999999999999999999444 444444433323344 99999999999999999999988874 444688
Q ss_pred C--CceecccchhcccCCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 031578 114 E--PKLNWNATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQEGMYD 157 (157)
Q Consensus 114 e--p~iswnatye~LLgsnkpFpqPIPL~EMVDfLVDiWE~EGLyd 157 (157)
+ |.++|++|||+||++++||++||||+|||+||||+|++||+||
T Consensus 77 ~~Ip~~~y~~iY~~Lv~~~~pf~~PI~L~dmv~~Lv~gW~~eg~w~ 122 (122)
T PF13259_consen 77 ESIPPISYPAIYEKLVGSNKPFKQPIPLSDMVDFLVDGWEEEGLWP 122 (122)
T ss_pred cccchhhHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHhhcCCccC
Confidence 8 9999999999999999999999999999999999999999997
No 2
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=51.53 E-value=6.4 Score=34.98 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=7.8
Q ss_pred CccccCCCC
Q 031578 3 GCLGCFIRP 11 (157)
Q Consensus 3 gC~Gc~~kp 11 (157)
||||||.|-
T Consensus 30 gcF~f~rkK 38 (282)
T PF07418_consen 30 GCFGFCRKK 38 (282)
T ss_pred ceehhhccc
Confidence 999999854
No 3
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=37.96 E-value=17 Score=32.01 Aligned_cols=14 Identities=57% Similarity=0.845 Sum_probs=11.4
Q ss_pred CChHHHHHHHHHHH
Q 031578 137 IPLSEMVDFLVDIW 150 (157)
Q Consensus 137 IPL~EMVDfLVDiW 150 (157)
|--+||.|||+||=
T Consensus 172 v~kSeMfDFLidiv 185 (286)
T COG5208 172 VKKSEMFDFLIDIV 185 (286)
T ss_pred HHHHHHHhHHhhhc
Confidence 44589999999984
No 4
>PLN00211 predicted protein; Provisional
Probab=37.88 E-value=24 Score=24.99 Aligned_cols=13 Identities=46% Similarity=1.071 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHh
Q 031578 139 LSEMVDFLVDIWE 151 (157)
Q Consensus 139 L~EMVDfLVDiWE 151 (157)
|+-|.-||.|||-
T Consensus 29 lphMtsfLAeIwS 41 (61)
T PLN00211 29 LPHMTSFLAEIWS 41 (61)
T ss_pred cHHHHHHHHHHHH
Confidence 7999999999995
No 5
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=37.02 E-value=27 Score=23.02 Aligned_cols=17 Identities=29% Similarity=0.810 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhcCCCC
Q 031578 141 EMVDFLVDIWEQEGMYD 157 (157)
Q Consensus 141 EMVDfLVDiWE~EGLyd 157 (157)
+=|.=|++||++-+.|+
T Consensus 48 ~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 48 KKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHCTSS-
T ss_pred HHHHHHHHHhhCCCCCC
Confidence 34567899999999986
No 6
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=32.03 E-value=40 Score=22.62 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhcCC
Q 031578 140 SEMVDFLVDIWEQEGM 155 (157)
Q Consensus 140 ~EMVDfLVDiWE~EGL 155 (157)
+++|+.+.+.|++.|.
T Consensus 28 ~~~ve~mL~~l~~kG~ 43 (69)
T PF09012_consen 28 PEAVEAMLEQLIRKGY 43 (69)
T ss_dssp HHHHHHHHHHHHCCTS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 7899999999999884
No 7
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=31.26 E-value=33 Score=30.00 Aligned_cols=25 Identities=36% Similarity=0.701 Sum_probs=19.7
Q ss_pred chhcccCCCCC---------CCCCCChHHHHHHH
Q 031578 122 TYESLLGSNKP---------FPQPIPLSEMVDFL 146 (157)
Q Consensus 122 tye~LLgsnkp---------FpqPIPL~EMVDfL 146 (157)
.|+.+|+++.+ |+.||+|.|.++..
T Consensus 94 ~l~~~l~~~~~~~aildirEf~~pv~l~~~~~ai 127 (241)
T COG1709 94 ALARVLGSEFPSKAILDIREFDIPVTLEELVEAI 127 (241)
T ss_pred HHHHHhccCCchhheEehhhcCCCcCHHHHHHHh
Confidence 36777777655 99999999998753
No 8
>TIGR03487 cas_csp2 CRISPR-associated protein, Csp2 family. Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pging (Porphyromonas gingivalis) subtype.
Probab=29.52 E-value=30 Score=32.22 Aligned_cols=13 Identities=54% Similarity=1.032 Sum_probs=11.1
Q ss_pred CCCChHHHHHHHH
Q 031578 135 QPIPLSEMVDFLV 147 (157)
Q Consensus 135 qPIPL~EMVDfLV 147 (157)
.-||+.|||||+.
T Consensus 180 pdipi~emvdfi~ 192 (489)
T TIGR03487 180 PDIPINEMVDFIA 192 (489)
T ss_pred cCCcHHHHHHHHH
Confidence 4699999999974
No 9
>PRK07738 flagellar protein FlaG; Provisional
Probab=29.24 E-value=44 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCC
Q 031578 135 QPIPLSEMVDFLVDIWEQEGMY 156 (157)
Q Consensus 135 qPIPL~EMVDfLVDiWE~EGLy 156 (157)
+=||=.||+|++..+||--||+
T Consensus 91 RQIPpEe~L~l~~~m~e~~GlL 112 (117)
T PRK07738 91 REIPPKKLLDMYAAMMEFVGLL 112 (117)
T ss_pred eeCCCHHHHHHHHHHHHHhcce
Confidence 4699999999999999999985
No 10
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=25.24 E-value=26 Score=25.61 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=7.9
Q ss_pred CCCccccCCCC
Q 031578 1 MGGCLGCFIRP 11 (157)
Q Consensus 1 mggC~Gc~~kp 11 (157)
++|| +||.|+
T Consensus 16 ~~gC-~cc~~~ 25 (97)
T PF06749_consen 16 AGGC-LCCGKR 25 (97)
T ss_pred Hhcc-eEeCCC
Confidence 3689 999876
No 11
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=24.66 E-value=77 Score=20.11 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCC
Q 031578 128 GSNKPFPQPIPLSEMVDFLVDIWEQEGM 155 (157)
Q Consensus 128 gsnkpFpqPIPL~EMVDfLVDiWE~EGL 155 (157)
|...-+.+|+...++.+.|..+|+..|+
T Consensus 102 g~~~~i~~p~~~~~l~~~l~~~~~~~~~ 129 (129)
T PRK10610 102 GASGYVVKPFTAATLEEKLNKIFEKLGM 129 (129)
T ss_pred CCCeEEECCCCHHHHHHHHHHHHHHccC
Confidence 3344568899999999999999998875
No 12
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=24.51 E-value=33 Score=25.57 Aligned_cols=9 Identities=44% Similarity=1.424 Sum_probs=7.9
Q ss_pred CCCccccCC
Q 031578 1 MGGCLGCFI 9 (157)
Q Consensus 1 mggC~Gc~~ 9 (157)
||+|+.||.
T Consensus 1 MGn~~~~~~ 9 (181)
T PF14009_consen 1 MGNCVSCCL 9 (181)
T ss_pred CCCcccccc
Confidence 999999974
No 13
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=24.46 E-value=34 Score=23.75 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.4
Q ss_pred CccccCCCCCcccccC
Q 031578 3 GCLGCFIRPPVNTSAS 18 (157)
Q Consensus 3 gC~Gc~~kp~~~~~vd 18 (157)
||+|.|.+.|.+ .||
T Consensus 47 gClG~C~~~P~v-~V~ 61 (80)
T cd03083 47 SCTGLCDQGPAL-LIN 61 (80)
T ss_pred ceecCcCCCCeE-EEC
Confidence 899999988644 454
No 14
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=24.34 E-value=36 Score=23.94 Aligned_cols=20 Identities=45% Similarity=0.838 Sum_probs=15.5
Q ss_pred CCCCCCCCChHH-----HHHHHHHH
Q 031578 130 NKPFPQPIPLSE-----MVDFLVDI 149 (157)
Q Consensus 130 nkpFpqPIPL~E-----MVDfLVDi 149 (157)
|..|.|.|||-| |.|++-++
T Consensus 28 npaf~qkiplietgcekm~dyieel 52 (62)
T PF10653_consen 28 NPAFQQKIPLIETGCEKMTDYIEEL 52 (62)
T ss_pred CHHHHhccchhhhhhHHHHHHHHHH
Confidence 556999999976 77776554
No 15
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=23.35 E-value=47 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=10.5
Q ss_pred CCCccccCCCC-Cccc
Q 031578 1 MGGCLGCFIRP-PVNT 15 (157)
Q Consensus 1 mggC~Gc~~kp-~~~~ 15 (157)
||-=++||.|+ .|++
T Consensus 1 MG~~~s~Ckrr~n~l~ 16 (32)
T PF10813_consen 1 MGSLLSMCKRRHNPLK 16 (32)
T ss_pred CcceeeeeeccCCccc
Confidence 78788888866 4444
No 16
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.24 E-value=36 Score=32.46 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=10.5
Q ss_pred CCCccccCCCCC
Q 031578 1 MGGCLGCFIRPP 12 (157)
Q Consensus 1 mggC~Gc~~kp~ 12 (157)
||.|+.||.++.
T Consensus 1 MG~c~sc~~~S~ 12 (550)
T KOG4224|consen 1 MGNCLSCCESSE 12 (550)
T ss_pred CCcccccccccc
Confidence 999999998763
No 17
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=22.77 E-value=36 Score=23.08 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=12.9
Q ss_pred CCCCCChHHHHHHHHHH
Q 031578 133 FPQPIPLSEMVDFLVDI 149 (157)
Q Consensus 133 FpqPIPL~EMVDfLVDi 149 (157)
..--|||.||++|-.++
T Consensus 43 i~~~iP~~e~~~~~~~L 59 (80)
T cd04096 43 IKAYLPVIESFGFETDL 59 (80)
T ss_pred EEEEEeHHHHhCcHHHH
Confidence 33458999999987765
No 18
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=22.39 E-value=63 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHhhh
Q 031578 84 FVNHGFLLWNQTRQRWI 100 (157)
Q Consensus 84 FVNhGl~~W~q~R~qWv 100 (157)
++|.++.+|-+.|+.|-
T Consensus 77 r~n~ay~Rwwe~r~~wg 93 (293)
T PF01062_consen 77 RTNTAYDRWWEARKLWG 93 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999999999973
No 19
>PRK00809 hypothetical protein; Provisional
Probab=22.18 E-value=57 Score=25.68 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.1
Q ss_pred CCCCCCCChHHHHHHHH
Q 031578 131 KPFPQPIPLSEMVDFLV 147 (157)
Q Consensus 131 kpFpqPIPL~EMVDfLV 147 (157)
+-|..||||.+|++-|.
T Consensus 97 ~~~~~~v~l~~L~~~L~ 113 (144)
T PRK00809 97 KIFEEPIDFKPLIPKLK 113 (144)
T ss_pred eecCCcccHHHHHhhhh
Confidence 45889999999988773
No 20
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=21.75 E-value=64 Score=20.95 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.6
Q ss_pred CCChHHHHHHHHH
Q 031578 136 PIPLSEMVDFLVD 148 (157)
Q Consensus 136 PIPL~EMVDfLVD 148 (157)
|+|++ |.|||.|
T Consensus 26 ~LP~~-Lk~yL~~ 37 (42)
T cd03737 26 QLPLP-IKEFLDQ 37 (42)
T ss_pred hccHH-HHHHHHh
Confidence 67776 9999875
No 21
>PRK08868 flagellar protein FlaG; Provisional
Probab=21.52 E-value=75 Score=25.68 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHHhh---cCCC
Q 031578 134 PQPIPLSEMVDFLVDIWEQ---EGMY 156 (157)
Q Consensus 134 pqPIPL~EMVDfLVDiWE~---EGLy 156 (157)
=+=||=.||++++..|||+ -||+
T Consensus 115 IRQIP~Ee~L~la~~l~e~~~~~GLl 140 (144)
T PRK08868 115 IRQIPDEEMLEVLRRLAEQAHNSGLL 140 (144)
T ss_pred eeeCCCHHHHHHHHHHHHhhhcccce
Confidence 3569999999999999976 5886
No 22
>PRK00889 adenylylsulfate kinase; Provisional
Probab=21.00 E-value=1.5e+02 Score=22.33 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=25.7
Q ss_pred hcccCCCCCCCCCC-----------ChHHHHHHHHHHHhhcCCC
Q 031578 124 ESLLGSNKPFPQPI-----------PLSEMVDFLVDIWEQEGMY 156 (157)
Q Consensus 124 e~LLgsnkpFpqPI-----------PL~EMVDfLVDiWE~EGLy 156 (157)
+.|++...||-.|. ++.|+|+-+++..++.||+
T Consensus 131 ~~~~~~~~~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~~~~~ 174 (175)
T PRK00889 131 KHFTGIDDPYEPPLNPEVECRTDLESLEESVDKVLQKLEELGYL 174 (175)
T ss_pred CCCcccCCCCCCCCCCcEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 45566667766542 7899999999999999987
No 23
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=76 Score=27.86 Aligned_cols=18 Identities=39% Similarity=0.772 Sum_probs=16.7
Q ss_pred CCCCCCChHHHHHHHHHH
Q 031578 132 PFPQPIPLSEMVDFLVDI 149 (157)
Q Consensus 132 pFpqPIPL~EMVDfLVDi 149 (157)
.|-.+||+..+|.||-||
T Consensus 100 ~y~e~iP~eqLv~~lcdi 117 (249)
T KOG0178|consen 100 RYGEEIPCEQLVTFLCDI 117 (249)
T ss_pred HhCCCCcHHHHHHHHHHH
Confidence 588999999999999998
Done!