Query 031579
Match_columns 157
No_of_seqs 78 out of 80
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2auv_A Potential NAD-reducing 22.7 31 0.0011 22.8 1.2 15 3-18 52-66 (85)
2 3d9j_A RNA-binding protein 16; 20.8 46 0.0016 24.6 2.0 20 138-157 105-124 (145)
3 2km4_A Regulator of TY1 transp 19.3 46 0.0016 24.4 1.6 17 141-157 104-120 (142)
4 3h4c_A Transcription factor TF 19.2 39 0.0013 28.5 1.3 14 130-143 69-82 (260)
5 1ytv_M V1AR, vasopressin V1A r 16.7 95 0.0032 22.2 2.7 12 3-14 27-38 (84)
6 2hc5_A ORF 99, hypothetical pr 15.7 39 0.0013 24.9 0.5 21 135-155 83-103 (117)
7 4fu3_A Regulation of nuclear P 15.5 76 0.0026 22.4 2.0 15 143-157 104-118 (135)
8 1m2d_A [2Fe-2S] ferredoxin; th 14.6 44 0.0015 23.2 0.5 14 3-17 54-67 (110)
9 2afd_A Protein ASL1650; twiste 14.2 1.9E+02 0.0064 17.8 3.5 24 129-152 2-25 (88)
10 3i9v_2 NADH-quinone oxidoreduc 13.5 50 0.0017 25.6 0.5 15 3-18 123-137 (181)
No 1
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=22.67 E-value=31 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.2
Q ss_pred CccccCCCCCcccccC
Q 031579 3 GCLGCFIRPPVNTSAS 18 (157)
Q Consensus 3 gC~Gc~~kp~~~~~vd 18 (157)
||+|.|...| +..|+
T Consensus 52 ~ClG~C~~~P-~v~V~ 66 (85)
T 2auv_A 52 RCVGGCALAP-IVMVG 66 (85)
T ss_dssp SSSSSCTTSC-CCEEG
T ss_pred CccCcCCCCC-EEEEC
Confidence 8999998765 44555
No 2
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.84 E-value=46 Score=24.61 Aligned_cols=20 Identities=5% Similarity=0.429 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHHHhhcCCCC
Q 031579 138 PLSEMVDFLVDIWEQEGMYD 157 (157)
Q Consensus 138 PL~EMVDfLVDiWE~EGLyd 157 (157)
..-.-+.=|++||++-++|+
T Consensus 105 ~~r~kl~rLl~iW~~r~vF~ 124 (145)
T 3d9j_A 105 DDKSKIVRVLNLWQKNNVFK 124 (145)
T ss_dssp GGHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 45567778999999999984
No 3
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=19.29 E-value=46 Score=24.36 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhcCCCC
Q 031579 141 EMVDFLVDIWEQEGMYD 157 (157)
Q Consensus 141 EMVDfLVDiWE~EGLyd 157 (157)
.-|.=|++|||+-+.|+
T Consensus 104 ~kv~rvl~iWeer~vf~ 120 (142)
T 2km4_A 104 KKLSRVVNILKERNIFS 120 (142)
T ss_dssp HHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhccCCcC
Confidence 33556779999999986
No 4
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=19.25 E-value=39 Score=28.51 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.9
Q ss_pred CCCCCCCCChHHHH
Q 031579 130 NKPFPQPIPLSEMV 143 (157)
Q Consensus 130 nkpFpqPIPL~EMV 143 (157)
.+--.+||||+||-
T Consensus 69 ae~~~~PiplaE~r 82 (260)
T 3h4c_A 69 AEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHTTCCCCHHHHH
T ss_pred HHHcCCCccHHHHH
Confidence 34567999999993
No 5
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=16.69 E-value=95 Score=22.23 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=9.6
Q ss_pred CccccCCCCCcc
Q 031579 3 GCLGCFIRPPVN 14 (157)
Q Consensus 3 gC~Gc~~kp~~~ 14 (157)
.||-||.|+.+-
T Consensus 27 r~fpCC~~~k~~ 38 (84)
T 1ytv_M 27 GSFPCCQNMKEK 38 (84)
T ss_pred hccccccCcccc
Confidence 699999987653
No 6
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=15.70 E-value=39 Score=24.89 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 031579 135 QPIPLSEMVDFLVDIWEQEGM 155 (157)
Q Consensus 135 qPIPL~EMVDfLVDiWE~EGL 155 (157)
+=||-.||+|+...++|.-||
T Consensus 83 RqIPpEe~L~l~~~l~e~~Gl 103 (117)
T 2hc5_A 83 REIPPKRWLDFYAAMTEFLGL 103 (117)
T ss_dssp EEECHHHHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHhhce
Confidence 469999999999999998886
No 7
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=15.45 E-value=76 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.915 Sum_probs=12.2
Q ss_pred HHHHHHHHhhcCCCC
Q 031579 143 VDFLVDIWEQEGMYD 157 (157)
Q Consensus 143 VDfLVDiWE~EGLyd 157 (157)
|.=|++||++-++|+
T Consensus 104 l~kll~iW~~r~vf~ 118 (135)
T 4fu3_A 104 LERLLNIWQERSVYG 118 (135)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHhcCCCCcC
Confidence 445889999999985
No 8
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=14.61 E-value=44 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=10.5
Q ss_pred CccccCCCCCccccc
Q 031579 3 GCLGCFIRPPVNTSA 17 (157)
Q Consensus 3 gC~Gc~~kp~~~~~v 17 (157)
||+|.|...+. +.|
T Consensus 54 ~ClG~C~~gP~-v~V 67 (110)
T 1m2d_A 54 GCMNASMMGPV-VVV 67 (110)
T ss_dssp SCCSCGGGCSC-EEE
T ss_pred CCCCccCCCCE-EEE
Confidence 89999987654 445
No 9
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=14.18 E-value=1.9e+02 Score=17.83 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=18.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhh
Q 031579 129 SNKPFPQPIPLSEMVDFLVDIWEQ 152 (157)
Q Consensus 129 snkpFpqPIPL~EMVDfLVDiWE~ 152 (157)
+.....++.|..++.+.|.++|.+
T Consensus 2 s~~~~~~~~~~~~~~~~l~~~~~~ 25 (88)
T 2afd_A 2 SHMKTIQPASVEDIQSWLIDQFAQ 25 (88)
T ss_dssp CCCSCCCCSSHHHHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHH
Confidence 334445678889999999999975
No 10
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=13.47 E-value=50 Score=25.61 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=10.9
Q ss_pred CccccCCCCCcccccC
Q 031579 3 GCLGCFIRPPVNTSAS 18 (157)
Q Consensus 3 gC~Gc~~kp~~~~~vd 18 (157)
||+|+|...| +..||
T Consensus 123 ~ClG~C~~gP-vv~V~ 137 (181)
T 3i9v_2 123 ECLGSCHTAP-VIQVN 137 (181)
T ss_dssp SCCSCGGGCS-CEECS
T ss_pred CCCCccCCCC-EEEEC
Confidence 8999998765 44454
Done!