Query 031579
Match_columns 157
No_of_seqs 78 out of 80
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 03:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031579.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031579hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p5zx2 b.106.1.1 (X:15-201) H 29.0 7.8 0.00057 27.7 0.9 14 143-156 156-169 (187)
2 d2idba2 d.333.1.1 (A:326-491) 23.7 16 0.0012 26.2 1.8 27 130-156 139-166 (166)
3 d1uv7a_ d.67.4.1 (A:) General 16.0 49 0.0036 21.0 2.7 21 135-155 33-53 (80)
4 d1ug7a_ a.24.24.1 (A:) Domain 15.5 28 0.002 24.9 1.4 18 123-140 105-125 (128)
5 d1eh9a2 b.71.1.1 (A:491-557) G 15.5 20 0.0014 23.2 0.6 14 125-138 40-53 (67)
6 d1t56a2 a.121.1.1 (A:95-214) E 14.0 53 0.0038 21.8 2.5 60 89-152 41-115 (120)
7 d2v4ja2 d.58.36.2 (A:2-167) Di 12.1 44 0.0032 24.7 1.8 15 140-154 111-125 (166)
8 d1yixa1 c.1.9.12 (A:1-265) Put 10.5 91 0.0066 22.5 3.1 26 126-151 201-236 (265)
9 d3c7ba2 d.58.36.2 (A:1-166) Di 10.4 55 0.004 24.2 1.8 15 140-154 109-123 (166)
10 d1nija2 d.237.1.1 (A:224-318) 10.0 76 0.0056 19.8 2.2 21 133-153 8-28 (95)
No 1
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=28.97 E-value=7.8 Score=27.70 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcCCC
Q 031579 143 VDFLVDIWEQEGMY 156 (157)
Q Consensus 143 VDfLVDiWE~EGLy 156 (157)
-|||..++|+||+|
T Consensus 156 ~~Fl~RL~ee~Gi~ 169 (187)
T d2p5zx2 156 LTFVSRLLSEVGIW 169 (187)
T ss_dssp HHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhcCCE
Confidence 48999999999997
No 2
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Probab=23.65 E-value=16 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.624 Sum_probs=22.0
Q ss_pred CCCCCCCCCh-HHHHHHHHHHHhhcCCC
Q 031579 130 NKPFPQPIPL-SEMVDFLVDIWEQEGMY 156 (157)
Q Consensus 130 nkpFpqPIPL-~EMVDfLVDiWE~EGLy 156 (157)
.+.||++|.. +|+.+-..+.|++=|||
T Consensus 139 ~~~~p~~~~~~~e~~~~v~~~W~elGl~ 166 (166)
T d2idba2 139 QREWGRPIKKDPDVVAHIDAIWDELAIF 166 (166)
T ss_dssp SSCCCEECCCCHHHHHHHHHHTTTSCCC
T ss_pred cccCCCcCCCCHHHHHHHHHHHHHcCCC
Confidence 3567777754 58999999999999997
No 3
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=15.95 E-value=49 Score=21.00 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHHHHHhhcCC
Q 031579 135 QPIPLSEMVDFLVDIWEQEGM 155 (157)
Q Consensus 135 qPIPL~EMVDfLVDiWE~EGL 155 (157)
.++|...++..|.++-++.|+
T Consensus 33 d~v~F~~ll~WL~~L~~~~Gi 53 (80)
T d1uv7a_ 33 QPLPFSQLVSWIAYLQERQGV 53 (80)
T ss_dssp CCBCHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHhcCCe
Confidence 467889999999999999986
No 4
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.50 E-value=28 Score=24.95 Aligned_cols=18 Identities=44% Similarity=0.698 Sum_probs=13.8
Q ss_pred hhcccCCCCCCC---CCCChH
Q 031579 123 YESLLGSNKPFP---QPIPLS 140 (157)
Q Consensus 123 ye~LLgsnkpFp---qPIPL~ 140 (157)
-..||..|+||| +||||.
T Consensus 105 Lknll~~~keFP~~v~~~~~~ 125 (128)
T d1ug7a_ 105 LKNILTYNKEFPFDVQPISGP 125 (128)
T ss_dssp HHTTTTCCSCCSSCCCCSSCC
T ss_pred HHHHhhcCCCCCcccccCCcc
Confidence 346789999998 677764
No 5
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=15.50 E-value=20 Score=23.21 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=11.3
Q ss_pred cccCCCCCCCCCCC
Q 031579 125 SLLGSNKPFPQPIP 138 (157)
Q Consensus 125 ~LLgsnkpFpqPIP 138 (157)
=||++|..||+.|-
T Consensus 40 LvlsSn~sFP~~I~ 53 (67)
T d1eh9a2 40 LLLSSNNSFPQHIE 53 (67)
T ss_dssp CCEESSSCSCSBCC
T ss_pred EEEecCCcCchhhh
Confidence 46788889999884
No 6
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.01 E-value=53 Score=21.77 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhcCCcCCccccc--C-CCCcee-------c-----ccchhcccCCCCCCCCCCChHHHHHHHHHHHhh
Q 031579 89 FLLWNQTRQRWIGNKKAENRTHQ--V-REPKLN-------W-----NATYESLLGSNKPFPQPIPLSEMVDFLVDIWEQ 152 (157)
Q Consensus 89 l~~W~q~R~qWvg~~~~~~~~~~--~-rep~is-------w-----natye~LLgsnkpFpqPIPL~EMVDfLVDiWE~ 152 (157)
-.+|++.|+.|+......=+..+ . -.+.++ + ...|..+.+ ++ ..++..+.|+-|..||-.
T Consensus 41 ~~~w~~~~~~~i~~ia~~I~~~q~~G~a~~~ld~~~~A~AL~~M~er~~~~~~~~-~~---~~~d~e~~v~tL~~iW~~ 115 (120)
T d1t56a2 41 AELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAG-EQ---PSVPEARVLDTLVHIWVT 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCSCHHHHHHHHHHHHHHHHHHHHHT-CS---SCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcc-CC---CCCCHHHHHHHHHHHHHH
Confidence 45899999999986422111100 0 111221 2 223545543 22 227899999999999953
No 7
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=12.13 E-value=44 Score=24.69 Aligned_cols=15 Identities=33% Similarity=0.833 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhcC
Q 031579 140 SEMVDFLVDIWEQEG 154 (157)
Q Consensus 140 ~EMVDfLVDiWE~EG 154 (157)
.+....|.||||.-|
T Consensus 111 T~~LR~LcDiWek~G 125 (166)
T d2v4ja2 111 ADYLRQLCDIWDLRG 125 (166)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhc
Confidence 799999999999866
No 8
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]}
Probab=10.52 E-value=91 Score=22.52 Aligned_cols=26 Identities=15% Similarity=0.636 Sum_probs=21.0
Q ss_pred ccCCCCCCCCCCC----------hHHHHHHHHHHHh
Q 031579 126 LLGSNKPFPQPIP----------LSEMVDFLVDIWE 151 (157)
Q Consensus 126 LLgsnkpFpqPIP----------L~EMVDfLVDiWE 151 (157)
||.|--||-.|.| |.++++.|.+++.
T Consensus 201 LlETD~P~~~p~~~~~~~n~P~~i~~~~~~iA~i~~ 236 (265)
T d1yixa1 201 LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKG 236 (265)
T ss_dssp EECCCBTSCCCTTCTTSCCCGGGHHHHHHHHHHHHT
T ss_pred EeecCCcccCccccCCCCCCcHHHHHHHHHHHHHHC
Confidence 5678889988877 7788999988875
No 9
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.35 E-value=55 Score=24.15 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhcC
Q 031579 140 SEMVDFLVDIWEQEG 154 (157)
Q Consensus 140 ~EMVDfLVDiWE~EG 154 (157)
.+....|.||||.-|
T Consensus 109 T~~LR~LcDiWek~G 123 (166)
T d3c7ba2 109 TKALRGLCDVWEKWG 123 (166)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhcc
Confidence 789999999999765
No 10
>d1nija2 d.237.1.1 (A:224-318) Hypothetical protein YjiA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.01 E-value=76 Score=19.76 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.3
Q ss_pred CCCCCChHHHHHHHHHHHhhc
Q 031579 133 FPQPIPLSEMVDFLVDIWEQE 153 (157)
Q Consensus 133 FpqPIPL~EMVDfLVDiWE~E 153 (157)
|.+|+.+..+.+||-++..+.
T Consensus 8 ~~~P~d~~~f~~~l~~ll~~~ 28 (95)
T d1nija2 8 LDYPVDISEVSRVMENLLLES 28 (95)
T ss_dssp ESSCBCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 678899999999999985443
Done!