BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031580
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VIJ|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Glucose
          Length = 487

 Score = 26.2 bits (56), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 38 PPSTAMGRNSSNSEILGSWQEQPSGNQAWNT-KQGTPALHTESASCNIPNKDKSYIFKEE 96
          P    +G  +++ +I G+W E   G   W+T     P    + A+ +I + D  +++KE+
Sbjct: 13 PDEFKLGAATASYQIEGAWDENGKGPNIWDTLTHEHPDYVVDGATGDIAD-DSYHLYKED 71


>pdb|3AI0|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With
          Para-Nitrophenyl-Beta-D-Glucopyranoside
 pdb|3VIM|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With A New
          Glucopyranosidic Product
 pdb|3VIN|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With A New
          Glucopyranosidic Product
 pdb|3VIO|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With A New
          Glucopyranosidic Product
 pdb|3VIP|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With A New
          Glucopyranosidic Product
          Length = 487

 Score = 26.2 bits (56), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 38 PPSTAMGRNSSNSEILGSWQEQPSGNQAWNT-KQGTPALHTESASCNIPNKDKSYIFKEE 96
          P    +G  +++ +I G+W E   G   W+T     P    + A+ +I + D  +++KE+
Sbjct: 13 PDEFKLGAATASYQIEGAWDENGKGPNIWDTLTHEHPDYVVDGATGDIAD-DSYHLYKED 71


>pdb|3AHZ|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Tris
 pdb|3VIF|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Gluconolactone
 pdb|3VIG|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With
          1-Deoxynojirimycin
 pdb|3VIH|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Glycerol
 pdb|3VII|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Bis-Tris
          Length = 487

 Score = 26.2 bits (56), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 38 PPSTAMGRNSSNSEILGSWQEQPSGNQAWNT-KQGTPALHTESASCNIPNKDKSYIFKEE 96
          P    +G  +++ +I G+W E   G   W+T     P    + A+ +I + D  +++KE+
Sbjct: 13 PDEFKLGAATASYQIEGAWDENGKGPNIWDTLTHEHPDYVVDGATGDIAD-DSYHLYKED 71


>pdb|3VIK|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Cellobiose
 pdb|3VIL|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
          Neotermes Koshunensis In Complex With Salicin
          Length = 487

 Score = 26.2 bits (56), Expect = 8.4,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 38 PPSTAMGRNSSNSEILGSWQEQPSGNQAWNT-KQGTPALHTESASCNIPNKDKSYIFKEE 96
          P    +G  +++ +I G+W E   G   W+T     P    + A+ +I + D  +++KE+
Sbjct: 13 PDEFKLGAATASYQIEGAWDENGKGPNIWDTLTHEHPDYVVDGATGDIAD-DSYHLYKED 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,539,133
Number of Sequences: 62578
Number of extensions: 175986
Number of successful extensions: 182
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 12
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)