BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031581
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
 pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
          Length = 444

 Score = 31.2 bits (69), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 51  QNTVVAISVGLVSVAVGIGIPIFYETQIDNAAK-RENTQPCFP---CSGSGAQRCRFCM 105
           Q  + AIS GL ++A  +GIPI   +Q+  A + R N +P       SGS  Q     M
Sbjct: 335 QQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVM 393


>pdb|3N6X|A Chain A, Crystal Structure Of A Putative Glutathionylspermidine
           Synth (Mfla_0391) From Methylobacillus Flagellatus Kt At
           2.35 A R
          Length = 474

 Score = 27.3 bits (59), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 134 TCTTCQGTGIQPRYLDRREF 153
           TC T   TGI PR++D R F
Sbjct: 413 TCPTLVETGIAPRHVDLRPF 432


>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj
           Subfamily A Menber 3
          Length = 104

 Score = 26.2 bits (56), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 75  ETQIDNAAKRENTQ-------PCFPCSGSG------AQRCRFCMGTGSVTVELGGDEREF 121
           E   + AAK  N +        C  C+G G       Q C +C G+G  T+  G     F
Sbjct: 9   ELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTG----PF 64

Query: 122 ---SKCINCDGVGSLT---CTTCQGTG 142
              S C  C G GS+    C  C+G G
Sbjct: 65  VMRSTCRRCGGRGSIIISPCVVCRGAG 91


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,896
Number of Sequences: 62578
Number of extensions: 161934
Number of successful extensions: 366
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 54
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)