Query 031581
Match_columns 157
No_of_seqs 123 out of 1412
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 99.9 2.8E-26 6E-31 169.5 7.6 110 48-157 2-111 (111)
2 COG0484 DnaJ DnaJ-class molecu 99.7 6.1E-17 1.3E-21 140.6 9.9 88 48-145 113-210 (371)
3 PRK14282 chaperone protein Dna 99.6 4.8E-15 1E-19 128.6 10.1 88 49-146 124-223 (369)
4 PRK14286 chaperone protein Dna 99.6 4.1E-15 9E-20 129.2 8.7 87 49-146 122-217 (372)
5 PRK14279 chaperone protein Dna 99.6 4.6E-15 9.9E-20 129.8 9.0 87 49-146 145-240 (392)
6 PRK14298 chaperone protein Dna 99.6 6.6E-15 1.4E-19 128.2 9.4 88 49-146 113-212 (377)
7 PRK14280 chaperone protein Dna 99.6 8.2E-15 1.8E-19 127.5 9.4 87 49-145 115-213 (376)
8 PRK14278 chaperone protein Dna 99.6 8.6E-15 1.9E-19 127.5 9.3 88 49-146 111-210 (378)
9 PRK14276 chaperone protein Dna 99.6 9.1E-15 2E-19 127.4 9.1 87 49-145 118-216 (380)
10 PRK14295 chaperone protein Dna 99.6 8.4E-15 1.8E-19 128.0 8.8 87 49-146 138-233 (389)
11 PRK14285 chaperone protein Dna 99.6 8.8E-15 1.9E-19 126.9 8.6 86 49-145 118-212 (365)
12 PRK14284 chaperone protein Dna 99.6 9.1E-15 2E-19 127.8 8.5 86 49-145 130-224 (391)
13 PRK10767 chaperone protein Dna 99.6 1.2E-14 2.6E-19 126.0 9.1 87 49-146 114-209 (371)
14 PRK14277 chaperone protein Dna 99.6 1.5E-14 3.2E-19 126.3 9.6 88 49-146 127-226 (386)
15 PRK14300 chaperone protein Dna 99.6 1.5E-14 3.1E-19 125.8 9.2 88 49-147 117-213 (372)
16 PRK14297 chaperone protein Dna 99.6 1.8E-14 3.9E-19 125.4 9.6 88 49-146 120-219 (380)
17 PRK14288 chaperone protein Dna 99.6 1.3E-14 2.8E-19 126.0 8.6 87 49-146 112-206 (369)
18 PRK14301 chaperone protein Dna 99.6 1E-14 2.2E-19 126.9 7.9 87 49-146 116-211 (373)
19 TIGR02349 DnaJ_bact chaperone 99.5 1.6E-14 3.5E-19 124.3 8.8 89 48-146 114-214 (354)
20 PRK14296 chaperone protein Dna 99.5 1.6E-14 3.5E-19 125.6 8.7 88 49-146 121-220 (372)
21 PRK14294 chaperone protein Dna 99.5 1.9E-14 4.1E-19 124.7 9.0 87 49-146 116-211 (366)
22 PRK14281 chaperone protein Dna 99.5 2.1E-14 4.6E-19 125.7 9.2 88 49-146 135-233 (397)
23 PRK14287 chaperone protein Dna 99.5 3E-14 6.6E-19 123.8 9.7 87 49-145 110-208 (371)
24 PRK14289 chaperone protein Dna 99.5 4.1E-14 9E-19 123.3 9.1 88 49-146 126-225 (386)
25 PRK14291 chaperone protein Dna 99.5 5E-14 1.1E-18 122.8 9.2 87 49-146 128-222 (382)
26 PRK14290 chaperone protein Dna 99.5 1.1E-13 2.3E-18 120.0 9.9 87 50-146 122-219 (365)
27 PTZ00037 DnaJ_C chaperone prot 99.5 1.2E-13 2.7E-18 122.0 8.6 88 49-146 122-222 (421)
28 PRK14293 chaperone protein Dna 99.5 1.1E-13 2.3E-18 120.4 7.9 88 49-146 115-214 (374)
29 PRK14283 chaperone protein Dna 99.5 1.3E-13 2.8E-18 120.0 8.2 88 49-146 118-217 (378)
30 PRK14292 chaperone protein Dna 99.5 2E-13 4.4E-18 118.3 9.1 88 49-146 111-211 (371)
31 KOG0712 Molecular chaperone (D 99.3 5.4E-12 1.2E-16 108.7 5.7 86 50-145 100-199 (337)
32 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.2 1.2E-11 2.7E-16 83.1 5.5 53 90-142 1-66 (66)
33 COG0484 DnaJ DnaJ-class molecu 98.9 1E-09 2.3E-14 95.7 5.1 85 40-133 109-209 (371)
34 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.3 5.5E-07 1.2E-11 60.4 2.9 45 79-131 7-66 (66)
35 PRK14298 chaperone protein Dna 98.2 1.9E-06 4.2E-11 75.3 4.4 82 43-133 111-210 (377)
36 PRK14296 chaperone protein Dna 98.1 2.2E-06 4.8E-11 74.8 4.2 82 43-133 119-218 (372)
37 PRK14278 chaperone protein Dna 98.1 2.3E-06 4.9E-11 74.9 4.2 82 43-133 109-208 (378)
38 PRK14285 chaperone protein Dna 98.1 2.1E-06 4.6E-11 74.7 3.4 82 43-133 116-211 (365)
39 PRK14279 chaperone protein Dna 98.1 1.9E-06 4.2E-11 75.7 2.7 82 43-133 143-238 (392)
40 PRK14286 chaperone protein Dna 98.1 2.8E-06 6.1E-11 74.1 3.3 82 43-133 120-215 (372)
41 PRK14300 chaperone protein Dna 98.1 3.9E-06 8.4E-11 73.2 4.2 82 43-133 115-210 (372)
42 PRK14282 chaperone protein Dna 98.0 4.1E-06 8.9E-11 72.9 3.6 82 43-133 122-221 (369)
43 PRK14280 chaperone protein Dna 98.0 3.3E-06 7.1E-11 73.8 2.7 82 43-133 113-212 (376)
44 PRK14301 chaperone protein Dna 98.0 3E-06 6.4E-11 74.0 2.2 82 43-133 114-209 (373)
45 PRK14284 chaperone protein Dna 98.0 4E-06 8.7E-11 73.6 3.0 82 43-133 128-223 (391)
46 PRK14277 chaperone protein Dna 98.0 6.5E-06 1.4E-10 72.1 4.2 82 43-133 125-224 (386)
47 PRK14295 chaperone protein Dna 98.0 4.2E-06 9.2E-11 73.4 3.0 82 43-133 136-231 (389)
48 PRK10767 chaperone protein Dna 98.0 5.2E-06 1.1E-10 72.2 3.5 82 43-133 112-207 (371)
49 PRK14294 chaperone protein Dna 98.0 5.8E-06 1.3E-10 71.9 3.6 82 43-133 114-209 (366)
50 PRK14276 chaperone protein Dna 98.0 3.7E-06 7.9E-11 73.5 2.4 82 43-133 116-215 (380)
51 PRK14291 chaperone protein Dna 97.9 1E-05 2.3E-10 70.8 4.7 81 43-133 126-220 (382)
52 COG1107 Archaea-specific RecJ- 97.9 8.1E-06 1.8E-10 75.0 3.4 58 88-145 3-81 (715)
53 PRK14297 chaperone protein Dna 97.9 8.2E-06 1.8E-10 71.3 3.2 82 43-133 118-217 (380)
54 PRK14287 chaperone protein Dna 97.9 8E-06 1.7E-10 71.3 2.9 82 43-133 108-207 (371)
55 KOG2813 Predicted molecular ch 97.9 9.7E-06 2.1E-10 69.9 3.2 60 88-147 188-271 (406)
56 PRK14281 chaperone protein Dna 97.9 1.2E-05 2.6E-10 70.7 3.6 80 44-133 134-231 (397)
57 PRK14289 chaperone protein Dna 97.8 1.1E-05 2.4E-10 70.6 3.1 82 43-133 124-223 (386)
58 PRK14288 chaperone protein Dna 97.8 1.1E-05 2.4E-10 70.3 3.2 81 43-133 110-204 (369)
59 TIGR02349 DnaJ_bact chaperone 97.8 1.1E-05 2.5E-10 69.6 3.1 82 43-133 113-212 (354)
60 KOG0715 Molecular chaperone (D 97.8 7.7E-06 1.7E-10 69.4 1.2 86 49-145 136-230 (288)
61 PTZ00037 DnaJ_C chaperone prot 97.7 1.7E-05 3.7E-10 70.5 2.7 83 43-133 120-220 (421)
62 PRK14293 chaperone protein Dna 97.7 2.5E-05 5.3E-10 68.2 3.5 82 43-133 113-212 (374)
63 PRK14290 chaperone protein Dna 97.7 2.9E-05 6.3E-10 67.5 3.6 78 46-133 122-217 (365)
64 KOG2813 Predicted molecular ch 97.7 1.1E-05 2.5E-10 69.5 0.9 13 99-111 188-200 (406)
65 PRK14283 chaperone protein Dna 97.7 2.7E-05 6E-10 68.0 2.8 82 43-133 116-215 (378)
66 PRK14292 chaperone protein Dna 97.3 0.00015 3.4E-09 63.0 3.1 82 43-133 109-209 (371)
67 COG1107 Archaea-specific RecJ- 97.2 0.00032 6.8E-09 64.8 4.3 45 88-140 19-88 (715)
68 PLN03165 chaperone protein dna 96.8 0.0011 2.3E-08 49.3 2.9 34 88-133 53-98 (111)
69 TIGR02642 phage_xxxx uncharact 96.5 0.0027 5.8E-08 51.0 3.4 13 99-111 100-112 (186)
70 TIGR02642 phage_xxxx uncharact 96.2 0.0037 8E-08 50.3 2.5 24 88-111 100-128 (186)
71 KOG2824 Glutaredoxin-related p 96.0 0.0089 1.9E-07 50.7 4.3 54 85-139 227-280 (281)
72 cd03031 GRX_GRX_like Glutaredo 95.7 0.013 2.9E-07 45.2 3.9 50 86-135 98-147 (147)
73 KOG0712 Molecular chaperone (D 95.3 0.011 2.4E-07 51.4 2.3 81 46-133 100-198 (337)
74 cd03031 GRX_GRX_like Glutaredo 88.7 0.61 1.3E-05 36.0 3.8 34 99-144 100-145 (147)
75 PF07092 DUF1356: Protein of u 85.0 0.68 1.5E-05 38.6 2.3 26 88-113 25-53 (238)
76 KOG2824 Glutaredoxin-related p 84.0 1.4 3.1E-05 37.6 3.8 22 122-143 230-251 (281)
77 TIGR00630 uvra excinuclease AB 83.7 0.89 1.9E-05 44.5 2.8 37 100-148 738-775 (924)
78 PF07092 DUF1356: Protein of u 82.0 0.51 1.1E-05 39.4 0.4 29 120-148 26-54 (238)
79 PRK00349 uvrA excinuclease ABC 78.5 1.6 3.4E-05 42.9 2.6 38 100-149 740-778 (943)
80 TIGR00630 uvra excinuclease AB 77.4 0.92 2E-05 44.4 0.6 10 101-110 277-286 (924)
81 TIGR03655 anti_R_Lar restricti 75.8 5.4 0.00012 25.2 3.7 14 99-112 2-15 (53)
82 KOG0715 Molecular chaperone (D 75.2 1.1 2.4E-05 38.1 0.4 46 79-133 173-229 (288)
83 PRK00349 uvrA excinuclease ABC 74.2 1.8 3.9E-05 42.6 1.7 9 101-109 279-287 (943)
84 PRK00635 excinuclease ABC subu 73.1 2.4 5.3E-05 44.4 2.4 31 100-131 1609-1640(1809)
85 PRK04023 DNA polymerase II lar 72.3 2.6 5.6E-05 41.9 2.2 45 88-142 627-673 (1121)
86 PRK14714 DNA polymerase II lar 67.9 5.8 0.00013 40.3 3.6 46 88-143 668-720 (1337)
87 COG0178 UvrA Excinuclease ATPa 66.2 5.4 0.00012 39.0 2.9 18 134-151 755-772 (935)
88 PRK14890 putative Zn-ribbon RN 64.9 7 0.00015 25.9 2.5 19 122-140 37-56 (59)
89 COG0178 UvrA Excinuclease ATPa 63.5 5.1 0.00011 39.2 2.3 33 99-132 731-764 (935)
90 PRK00635 excinuclease ABC subu 63.2 2.4 5.1E-05 44.5 -0.0 29 121-149 1607-1647(1809)
91 PF14354 Lar_restr_allev: Rest 60.9 13 0.00027 23.7 3.1 14 99-113 4-17 (61)
92 PF13901 DUF4206: Domain of un 58.6 4.4 9.5E-05 32.6 0.8 48 87-139 142-196 (202)
93 PF13719 zinc_ribbon_5: zinc-r 56.8 10 0.00022 22.3 2.0 11 100-110 4-14 (37)
94 PRK05580 primosome assembly pr 54.9 18 0.00039 34.2 4.3 53 85-144 379-433 (679)
95 TIGR02098 MJ0042_CXXC MJ0042 f 53.6 20 0.00043 20.7 2.9 10 100-109 4-13 (38)
96 PF14803 Nudix_N_2: Nudix N-te 52.4 14 0.00031 21.6 2.1 28 100-128 2-29 (34)
97 TIGR00595 priA primosomal prot 52.3 24 0.00053 32.1 4.6 53 85-144 211-265 (505)
98 PRK05978 hypothetical protein; 51.5 7.1 0.00015 30.3 0.9 25 100-128 35-59 (148)
99 PF03833 PolC_DP2: DNA polymer 44.9 7.2 0.00016 38.1 0.0 45 88-142 656-702 (900)
100 PF13717 zinc_ribbon_4: zinc-r 43.7 20 0.00044 21.0 1.8 6 134-139 27-32 (36)
101 PF03589 Antiterm: Antitermina 42.4 9.3 0.0002 27.4 0.3 34 99-132 6-43 (95)
102 PF07295 DUF1451: Protein of u 42.4 18 0.00039 27.9 1.9 13 134-146 132-144 (146)
103 PF14353 CpXC: CpXC protein 41.8 32 0.00068 25.2 3.1 35 99-133 2-50 (128)
104 PF08273 Prim_Zn_Ribbon: Zinc- 38.7 17 0.00036 22.1 0.9 11 100-110 5-15 (40)
105 TIGR03835 termin_org_DnaJ term 38.0 32 0.00069 33.7 3.1 29 49-77 655-683 (871)
106 PRK14299 chaperone protein Dna 37.9 24 0.00051 29.8 2.1 27 49-75 128-154 (291)
107 PRK10266 curved DNA-binding pr 37.7 30 0.00065 29.3 2.7 29 49-77 116-144 (306)
108 smart00709 Zpr1 Duplicated dom 36.7 50 0.0011 25.7 3.6 57 100-156 2-73 (160)
109 PRK14559 putative protein seri 36.6 25 0.00055 33.3 2.2 43 88-141 2-50 (645)
110 PF08792 A2L_zn_ribbon: A2L zi 35.6 27 0.00059 20.2 1.5 11 100-110 5-15 (33)
111 PF13453 zf-TFIIB: Transcripti 35.6 54 0.0012 19.4 2.9 6 101-106 2-7 (41)
112 COG3058 FdhE Uncharacterized p 35.4 9.4 0.0002 32.9 -0.7 13 120-132 224-236 (308)
113 PRK09710 lar restriction allev 34.9 67 0.0014 21.6 3.4 31 99-131 7-37 (64)
114 COG5082 AIR1 Arginine methyltr 34.8 34 0.00073 27.7 2.4 46 84-133 57-109 (190)
115 PF01556 CTDII: DnaJ C termina 34.8 25 0.00054 23.7 1.4 21 52-72 1-21 (81)
116 PRK12380 hydrogenase nickel in 33.1 47 0.001 24.2 2.8 22 88-109 71-97 (113)
117 PRK14873 primosome assembly pr 32.9 71 0.0015 30.4 4.6 67 66-145 368-435 (665)
118 TIGR00595 priA primosomal prot 32.7 27 0.0006 31.8 1.8 38 85-132 220-264 (505)
119 PF01155 HypA: Hydrogenase exp 32.2 35 0.00075 24.8 1.9 22 121-142 70-96 (113)
120 PRK03564 formate dehydrogenase 31.8 48 0.001 28.7 3.0 9 134-142 254-262 (309)
121 PF07754 DUF1610: Domain of un 31.5 37 0.00081 18.5 1.5 6 122-127 17-22 (24)
122 PF08271 TF_Zn_Ribbon: TFIIB z 31.1 60 0.0013 19.3 2.6 9 100-108 2-10 (43)
123 PRK05580 primosome assembly pr 31.0 28 0.00062 32.9 1.6 37 85-131 388-431 (679)
124 PRK00488 pheS phenylalanyl-tRN 30.3 42 0.0009 29.5 2.4 28 88-118 261-288 (339)
125 PF03367 zf-ZPR1: ZPR1 zinc-fi 29.4 57 0.0012 25.4 2.8 33 100-132 3-41 (161)
126 PF00098 zf-CCHC: Zinc knuckle 28.2 29 0.00062 17.3 0.6 9 124-132 3-11 (18)
127 COG1198 PriA Primosomal protei 26.8 41 0.00088 32.5 1.9 67 65-143 418-486 (730)
128 smart00778 Prim_Zn_Ribbon Zinc 26.6 85 0.0018 18.7 2.6 11 88-98 4-14 (37)
129 TIGR00100 hypA hydrogenase nic 26.5 81 0.0018 23.0 3.1 22 88-109 71-97 (115)
130 PF03811 Zn_Tnp_IS1: InsA N-te 25.9 82 0.0018 18.6 2.4 12 99-110 6-17 (36)
131 PRK00564 hypA hydrogenase nick 25.0 1E+02 0.0022 22.6 3.4 25 87-111 71-101 (117)
132 PF14392 zf-CCHC_4: Zinc knuck 24.8 1.2E+02 0.0026 18.6 3.2 39 49-97 3-41 (49)
133 TIGR00340 zpr1_rel ZPR1-relate 24.4 99 0.0022 24.2 3.4 32 101-132 1-39 (163)
134 PRK11032 hypothetical protein; 23.9 56 0.0012 25.7 1.9 12 134-145 144-155 (160)
135 COG1198 PriA Primosomal protei 23.8 1.4E+02 0.003 29.0 4.8 35 86-130 443-484 (730)
136 PF10080 DUF2318: Predicted me 23.5 1.3E+02 0.0028 21.8 3.6 12 66-77 15-26 (102)
137 smart00440 ZnF_C2C2 C2C2 Zinc 23.0 1.7E+02 0.0036 17.4 3.5 29 100-128 2-35 (40)
138 PF09538 FYDLN_acid: Protein o 23.0 51 0.0011 24.2 1.4 19 88-106 10-34 (108)
139 PRK00398 rpoP DNA-directed RNA 22.9 85 0.0018 18.9 2.2 6 134-139 23-28 (46)
140 TIGR00310 ZPR1_znf ZPR1 zinc f 22.2 1.4E+02 0.0029 24.1 3.8 33 100-132 2-41 (192)
141 PF15616 TerY-C: TerY-C metal 21.3 1.7E+02 0.0038 22.2 4.0 18 128-145 101-118 (131)
142 PF01096 TFIIS_C: Transcriptio 21.2 1.5E+02 0.0033 17.4 3.0 29 100-128 2-35 (39)
143 PRK14892 putative transcriptio 20.9 93 0.002 22.5 2.4 12 129-140 39-50 (99)
144 PF09723 Zn-ribbon_8: Zinc rib 20.4 1.1E+02 0.0023 18.3 2.2 9 121-129 26-34 (42)
145 PRK14810 formamidopyrimidine-D 20.2 1.2E+02 0.0026 25.3 3.3 11 95-105 241-251 (272)
146 TIGR00757 RNaseEG ribonuclease 20.0 56 0.0012 29.3 1.3 13 99-111 391-403 (414)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.93 E-value=2.8e-26 Score=169.46 Aligned_cols=110 Identities=86% Similarity=1.493 Sum_probs=104.9
Q ss_pred cCCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCC
Q 031581 48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINC 127 (157)
Q Consensus 48 dl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C 127 (157)
||++++.++|.+...++++|..++++++.++++++++.+...|..|+|+|..+|+.|+|+|.+.+.+.++++.+.+|+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C 81 (111)
T PLN03165 2 DLDQNTIVAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINC 81 (111)
T ss_pred ccchhhhhhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999987665567889999999
Q ss_pred CCCceEeCCCCCCeeEEEeeeecceeccCC
Q 031581 128 DGVGSLTCTTCQGTGIQPRYLDRREFKDDD 157 (157)
Q Consensus 128 ~G~G~~~C~~C~G~G~~~~~l~~r~~~~~~ 157 (157)
+|.|+..|+.|+|.|++++||+||+|+|||
T Consensus 82 ~G~Gk~~C~~C~G~G~~~~~~~~~~~~~~~ 111 (111)
T PLN03165 82 DGAGSLTCTTCQGSGIQPRYLDRREFKDDD 111 (111)
T ss_pred CCcceeeCCCCCCCEEEeeeecccccCCCC
Confidence 999999999999999999999999999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.1e-17 Score=140.61 Aligned_cols=88 Identities=26% Similarity=0.536 Sum_probs=80.1
Q ss_pred cCCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc-CCCeee
Q 031581 48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL-GGDERE 120 (157)
Q Consensus 48 dl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~-~G~~~~ 120 (157)
..+.|+.+.|+|+|++++.|.+++|.+++. ..|+.|+|+|+ .+|+.|+|+|.+...+ .|.|++
T Consensus 113 ~rG~Dl~~~l~isleEa~~G~~~~i~~~~~----------~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~ 182 (371)
T COG0484 113 RRGADLRYNLEITLEEAVFGVKKEIRVTRS----------VTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSF 182 (371)
T ss_pred ccCCceEEEEEeEhhhhccCceeeEeccee----------eECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEE
Confidence 355788999999999999999999999999 99999999987 8999999999987654 377899
Q ss_pred eeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 121 FSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 121 ~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
+++|+.|+|+|++ +|.+|+|.|++.
T Consensus 183 ~~~C~~C~G~G~~i~~pC~~C~G~G~v~ 210 (371)
T COG0484 183 QQTCPTCNGTGKIIKDPCGKCKGKGRVK 210 (371)
T ss_pred EEECCCCccceeECCCCCCCCCCCCeEe
Confidence 9999999999999 999999999955
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=4.8e-15 Score=128.57 Aligned_cols=88 Identities=31% Similarity=0.605 Sum_probs=80.6
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+.+.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.+...+ .|+++
T Consensus 124 ~g~di~~~l~~slee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 193 (369)
T PRK14282 124 RGEDIRYEIEVTLSDLINGAEIPVEYDRY----------ETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFV 193 (369)
T ss_pred CCCCeEEEEEEEHHHhcCCeEEEEEeeec----------ccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceE
Confidence 46799999999999999999999999998 99999999997 6899999999987654 48888
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|+|+|+. .|++|+|.|++..
T Consensus 194 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 223 (369)
T PRK14282 194 SERTCERCGGTGKIPGEYCHECGGSGRIRR 223 (369)
T ss_pred EEEECCCCCCcceeCCCCCCCCCCceeEEE
Confidence 89999999999998 9999999998764
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=4.1e-15 Score=129.22 Aligned_cols=87 Identities=30% Similarity=0.599 Sum_probs=80.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+++.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.+...+ |+++.++
T Consensus 122 ~g~di~~~l~vtLee~~~G~~k~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-G~~~~~~ 190 (372)
T PRK14286 122 RGSDLRYNLEVSLEDAALGREYKIEIPRL----------ESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ-GFFSVAT 190 (372)
T ss_pred CCCCeeEEEEEEHHHHhCCeeEEEEeecc----------ccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe-ceEEEEE
Confidence 46799999999999999999999999998 99999999997 7899999999987765 8888999
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|.|+|++ .|+.|+|.|++..
T Consensus 191 ~C~~C~G~G~~~~~~C~~C~G~g~~~~ 217 (372)
T PRK14286 191 TCPTCRGKGTVISNPCKTCGGQGLQEK 217 (372)
T ss_pred eCCCCCceeeEecccCCCCCCCcEEec
Confidence 99999999998 9999999999763
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=4.6e-15 Score=129.79 Aligned_cols=87 Identities=31% Similarity=0.727 Sum_probs=80.4
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+++.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.++..+ |+++++.
T Consensus 145 ~g~di~~~l~ltLee~~~G~~~~v~~~~~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~ 213 (392)
T PRK14279 145 RGNDLETETTLDFVEAAKGVTMPLRLTSP----------APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ-GAFGFSE 213 (392)
T ss_pred CCCCeEEEEEEEHHHHhCCeEEEEeeecc----------ccCCCCccccccCCCCCCCCCCCcceEEEEEEe-cceEEEE
Confidence 46799999999999999999999999998 99999999997 7899999999988765 7788899
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|+|+|++ .|.+|+|.|++..
T Consensus 214 ~C~~C~G~G~~i~~~C~~C~G~g~v~~ 240 (392)
T PRK14279 214 PCTDCRGTGSIIEDPCEECKGTGVTTR 240 (392)
T ss_pred ecCCCCceeEEeCCcCCCCCCCeEEEE
Confidence 99999999998 9999999999864
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=6.6e-15 Score=128.23 Aligned_cols=88 Identities=32% Similarity=0.600 Sum_probs=79.9
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+++.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.++..+ +|+++
T Consensus 113 ~g~di~~~l~vslee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~ 182 (377)
T PRK14298 113 RGSDLRYDLYITLEEAAFGVRKDIDVPRA----------ERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFV 182 (377)
T ss_pred CCCCEEEEEEEEHHHhhCCeEEEEEEEee----------ccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEE
Confidence 46799999999999999999999999998 99999999997 7899999999988654 35678
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|+|+|+. .|..|+|.|++..
T Consensus 183 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 212 (377)
T PRK14298 183 TTTTCSTCHGRGQVIESPCPVCSGTGKVRK 212 (377)
T ss_pred EEEeCCCCCCCCcccCCCCCCCCCccEEEE
Confidence 89999999999987 9999999999763
No 7
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=8.2e-15 Score=127.45 Aligned_cols=87 Identities=29% Similarity=0.589 Sum_probs=79.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+.+.|.|+|+++|.|.++++.+.+. +.|+.|+|+|. ..|+.|+|+|.+...+ .|+++
T Consensus 115 kg~di~~~l~vtLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~ 184 (376)
T PRK14280 115 QGADLQYTMTLTFEEAVFGKEKEIEIPKE----------ETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVV 184 (376)
T ss_pred cccCEEEEEEEEHHHHhCCceeEEEEeee----------ccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEE
Confidence 46799999999999999999999999998 99999999996 7899999999987654 37778
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
.+.+|+.|+|+|+. .|+.|+|.|++.
T Consensus 185 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 213 (376)
T PRK14280 185 NRQTCPHCNGTGQEIKEKCPTCHGKGKVR 213 (376)
T ss_pred EEEEcCCCCCCCceecCCCCCCCCceEEE
Confidence 88999999999998 999999999875
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=8.6e-15 Score=127.48 Aligned_cols=88 Identities=26% Similarity=0.553 Sum_probs=79.7
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+++.|.|+|++++.|.++.+.+.+. ..|+.|+|+|. .+|+.|+|+|.+...+ .|+++
T Consensus 111 ~g~d~~~~l~vtLee~~~G~~~~i~~~~~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~ 180 (378)
T PRK14278 111 PGSDSLLRMRLDLEECATGVTKQVTVDTA----------VLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVM 180 (378)
T ss_pred CCCCeEEEEEEEHHHhcCCeEEEEEEEee----------ccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEE
Confidence 46789999999999999999999999998 99999999997 6899999999987654 36778
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+++|+.|+|+|++ .|+.|+|.|++..
T Consensus 181 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 210 (378)
T PRK14278 181 TSRPCPTCRGVGEVIPDPCHECAGDGRVRA 210 (378)
T ss_pred EEEECCCCCccceeeCCCCCCCCCceeEec
Confidence 88999999999998 9999999998753
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=9.1e-15 Score=127.35 Aligned_cols=87 Identities=30% Similarity=0.628 Sum_probs=79.6
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.+.|+.+.|.++|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.+...+ .|+++
T Consensus 118 ~g~di~~~l~vtLee~~~G~~~~i~~~~~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 187 (380)
T PRK14276 118 QGDDLQYRVNLDFEEAIFGKEKEVSYNRE----------ATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMR 187 (380)
T ss_pred CCCCEEEEEEEEHHHhcCCeEEEEEeecc----------ccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEE
Confidence 46799999999999999999999999998 99999999997 7899999999987654 37788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
.+.+|+.|.|+|++ .|..|+|.|++.
T Consensus 188 ~~~~C~~C~G~G~~~~~~C~~C~G~g~~~ 216 (380)
T PRK14276 188 RQVTCDVCHGTGKEIKEPCQTCHGTGHEK 216 (380)
T ss_pred EEEECCCCCCCCccccCCCCCCCCceEEE
Confidence 89999999999998 999999999875
No 10
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=8.4e-15 Score=128.03 Aligned_cols=87 Identities=29% Similarity=0.650 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+++.|.|+|+++|.|.++++.+.+. +.|+.|+|+|. .+|+.|.|+|.+...+ |+|+.+.
T Consensus 138 ~g~di~~~l~lsLee~~~G~~k~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~ 206 (389)
T PRK14295 138 RGADVESEVTLSFTEAIDGATVPLRLTSQ----------APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS-GGFSLSE 206 (389)
T ss_pred CCCCEEEEEEEEHHHHhCCceEEEEeecc----------ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe-cceEEEE
Confidence 46799999999999999999999999998 99999999997 7899999999998776 6788889
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|+|+|++ .|..|.|.|++..
T Consensus 207 ~C~~C~G~G~~~~~~C~~C~G~g~~~~ 233 (389)
T PRK14295 207 PCPDCKGRGLIADDPCLVCKGSGRAKS 233 (389)
T ss_pred ecCCCcceeEEeccCCCCCCCCceEee
Confidence 99999999998 9999999998764
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=8.8e-15 Score=126.90 Aligned_cols=86 Identities=28% Similarity=0.555 Sum_probs=79.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+.+.|.|+|++++.|.++.+.+.+. ..|..|+|+|. ..|+.|+|+|++... .|+++.+.
T Consensus 118 ~g~di~~~l~vtlee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-~G~~~~~~ 186 (365)
T PRK14285 118 KGQDLTYQIEISLEDAYLGYKNNINITRN----------MLCESCLGKKSEKGTSPSICNMCNGSGRVMQG-GGFFRVTT 186 (365)
T ss_pred CCCCEEEEEEEEHHHhhCCeEEEEEeeec----------ccCCCCCCcccCCCCCCccCCCccCceeEEec-CceeEEee
Confidence 46799999999999999999999999998 99999999996 689999999998763 47888999
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEE
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
+|+.|.|+|++ .|.+|+|.|++.
T Consensus 187 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 212 (365)
T PRK14285 187 TCPKCYGNGKIISNPCKSCKGKGSLK 212 (365)
T ss_pred ecCCCCCcccccCCCCCCCCCCCEEe
Confidence 99999999998 999999999876
No 12
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=9.1e-15 Score=127.77 Aligned_cols=86 Identities=30% Similarity=0.598 Sum_probs=79.6
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
...|+.+.|.|+|+++|.|.++.+.+.+. ..|+.|+|+|+ .+|+.|+|+|.+...+ |+++.+.
T Consensus 130 ~g~d~~~~l~vslee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-G~~~~~~ 198 (391)
T PRK14284 130 QGASKKVHITLSFEEAAKGVEKELLVSGY----------KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR-GFFSMAS 198 (391)
T ss_pred CCCCeEEEEEEEHHHHhCCeeEEEEEeee----------ccCCCCcccccCCCCCCeecCccCCeeEEEEEe-ceEEEEE
Confidence 45789999999999999999999999998 99999999997 7899999999988765 8888899
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEE
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
+|+.|+|+|+. +|..|+|.|++.
T Consensus 199 ~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (391)
T PRK14284 199 TCPECGGEGRVITDPCSVCRGQGRIK 224 (391)
T ss_pred ECCCCCCCCcccCCcCCCCCCcceec
Confidence 99999999997 999999999875
No 13
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=1.2e-14 Score=126.02 Aligned_cols=87 Identities=28% Similarity=0.559 Sum_probs=80.1
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+++.|.|+|+++|.|.++.+.+.+. ..|+.|+|+|. ..|+.|+|+|.+...+ |+++.+.
T Consensus 114 ~g~di~~~l~vsLee~~~G~~~~v~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~ 182 (371)
T PRK10767 114 RGADLRYNMEITLEEAVRGVTKEIRIPTL----------VTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ-GFFTVQQ 182 (371)
T ss_pred CCCCeEEEEEeehHHhhCCeeEEEeeeec----------ccCCCCCCcccCCCCCCccCCCCCCeeEEEEee-ceEEEEE
Confidence 56799999999999999999999999998 99999999996 5899999999988765 8888889
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|.|+|+. .|+.|+|.|++..
T Consensus 183 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 209 (371)
T PRK10767 183 TCPTCHGRGKIIKDPCKKCHGQGRVEK 209 (371)
T ss_pred eCCCCCCceeECCCCCCCCCCCceEee
Confidence 99999999998 9999999998753
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=1.5e-14 Score=126.27 Aligned_cols=88 Identities=31% Similarity=0.561 Sum_probs=79.9
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+++.|.|+|+++|.|.++++.+.+. +.|+.|+|+|. .+|+.|.|+|++...+ .|+++
T Consensus 127 kg~di~~~l~vtLee~~~G~~~~v~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 196 (386)
T PRK14277 127 KGADIRYDLELTFEEAAFGTEKEIEVERF----------EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIV 196 (386)
T ss_pred CCCCEEEEEEEEHHHHhCCeEEEEEEEee----------ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEE
Confidence 46899999999999999999999999998 99999999996 7899999999987654 47788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|.|+|+. .|..|+|.|++..
T Consensus 197 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 226 (386)
T PRK14277 197 NIRTCDRCHGEGKIITDPCNKCGGTGRIRR 226 (386)
T ss_pred EEEECCCCCcceeeccCCCCCCCCCcEEee
Confidence 88999999999998 9999999999753
No 15
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.5e-14 Score=125.76 Aligned_cols=88 Identities=25% Similarity=0.555 Sum_probs=80.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+.+.|.++|++++.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.+...+ |+++.+.
T Consensus 117 ~g~di~~~l~~sLee~~~G~~k~i~~~r~----------~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~ 185 (372)
T PRK14300 117 RGSDLKYNLTINLEEAFHGIEKNISFSSE----------VKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ-GFFTIEQ 185 (372)
T ss_pred CCCCeeEEEEEEHHHHhCCceEEEEeeec----------cccCCCCCcccCCCCCCccCCCccCeEEEEEee-ceEEEEE
Confidence 45799999999999999999999999998 99999999996 7899999999987654 8888889
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEee
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPRY 147 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~~ 147 (157)
+|+.|+|+|++ +|.+|+|.|++...
T Consensus 186 ~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 213 (372)
T PRK14300 186 ACHKCQGNGQIIKNPCKKCHGMGRYHKQ 213 (372)
T ss_pred eCCCCCccceEeCCCCCCCCCceEEEee
Confidence 99999999998 99999999997643
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.8e-14 Score=125.44 Aligned_cols=88 Identities=26% Similarity=0.583 Sum_probs=79.8
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+++.|.|+|+++|.|.++++.+.+. ..|+.|+|+|. .+|+.|+|+|.+...+ .|+++
T Consensus 120 kg~di~~~l~vsLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 189 (380)
T PRK14297 120 RGADIEYTINLTFEEAVFGVEKEISVTRN----------ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFV 189 (380)
T ss_pred CCCCEEEEEEEEHHHhcCCeEEEEEeeee----------ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeE
Confidence 46799999999999999999999999998 99999999996 7899999999987654 37778
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|+|+|.+ .|..|+|.|+++.
T Consensus 190 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (380)
T PRK14297 190 STTTCDKCGGSGKVIEDPCNKCHGKGKVRK 219 (380)
T ss_pred EEEeCCCCCCCceEcCCCCCCCCCCeEEEe
Confidence 89999999999998 9999999998653
No 17
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.3e-14 Score=126.00 Aligned_cols=87 Identities=25% Similarity=0.553 Sum_probs=79.7
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEcCCCeeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVELGGDEREFSK 123 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~~G~~~~~~~ 123 (157)
.++|+.+.|.|+|+++|.|.++.+.+.+. +.|+.|+|+|. .+|+.|+|+|.+...+ |+++.+++
T Consensus 112 ~g~di~~~l~vslee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~ 180 (369)
T PRK14288 112 IAPDYLQTIELSFKEAVFGCKKTIKVQYQ----------SVCESCDGTGAKDKALETCKQCNGQGQVFMRQ-GFMSFAQT 180 (369)
T ss_pred CCCCeeEeccccHHHHhCCeEEEEEEEee----------ccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe-ceEEEEEe
Confidence 45799999999999999999999999998 99999999997 7899999999987665 77888899
Q ss_pred CCCCCCCceE---eCCCCCCeeEEEe
Q 031581 124 CINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 124 C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
|+.|.|+|+. .|+.|+|.|++..
T Consensus 181 C~~C~G~G~~~~~~C~~C~G~g~v~~ 206 (369)
T PRK14288 181 CGACQGKGKIIKTPCQACKGKTYILK 206 (369)
T ss_pred cCCCCCCceEccccCccCCCcceEEE
Confidence 9999999998 9999999998763
No 18
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1e-14 Score=126.88 Aligned_cols=87 Identities=29% Similarity=0.586 Sum_probs=79.9
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+.+.|.++|++++.|.++.+.+.+. ..|+.|+|+|. ..|+.|+|+|.+...+ |+++.+.
T Consensus 116 ~g~di~~~l~vtLee~~~G~~k~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-G~~~~~~ 184 (373)
T PRK14301 116 AGSDLRYNLTVSFRQAAKGDEVTLRIPKN----------VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ-GFFQIAV 184 (373)
T ss_pred CCCCEEEEEeccHHHHhCCceEEEEeeec----------ccCCCCCCcccCCCCCCcccCCccCeeEEEEEe-eeEEEEE
Confidence 46799999999999999999999999998 99999999997 7899999999987654 7888899
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|+|+|++ .|+.|+|.|++..
T Consensus 185 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 211 (373)
T PRK14301 185 PCPVCRGEGRVITHPCPKCKGSGIVQQ 211 (373)
T ss_pred eCCCCCceeeecCCCCCCCCCCceecc
Confidence 99999999998 9999999998753
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.55 E-value=1.6e-14 Score=124.33 Aligned_cols=89 Identities=26% Similarity=0.556 Sum_probs=80.4
Q ss_pred cCCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCe
Q 031581 48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDE 118 (157)
Q Consensus 48 dl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~ 118 (157)
...+|+++.|.++|+++|.|.++.+.+.+. +.|+.|+|+|. ..|+.|+|+|.+...+ .|++
T Consensus 114 ~~~~d~~~~l~vsLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~ 183 (354)
T TIGR02349 114 RRGEDLRYDLELTFEEAVFGVEKEIEIPRK----------ESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFF 183 (354)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEeecC----------CcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCce
Confidence 346799999999999999999999999998 99999999996 7899999999988665 3678
Q ss_pred eeeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 119 REFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 119 ~~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+.+.+|+.|.|+|+. .|+.|+|.|++..
T Consensus 184 ~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (354)
T TIGR02349 184 QQQQTCPTCGGEGKIIKEPCSTCKGKGRVKE 214 (354)
T ss_pred EEEEecCCCCCcceecCCCCCCCCCCcEecc
Confidence 888999999999998 9999999998764
No 20
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=1.6e-14 Score=125.60 Aligned_cols=88 Identities=31% Similarity=0.577 Sum_probs=78.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc-CCCe--e
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL-GGDE--R 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~-~G~~--~ 119 (157)
.++|+.+.|.|+|++++.|.++.+.+.+. ..|..|+|+|. .+|+.|+|+|.+...+ .|++ +
T Consensus 121 ~g~di~~~l~ltlee~~~G~~~~i~~~~~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q 190 (372)
T PRK14296 121 KGQSVSLDIYLTFKELLFGVDKIIELDLL----------TNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQ 190 (372)
T ss_pred CCCCeEEEeeccHHHhhCCeeEEEEEeee----------eccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEE
Confidence 46799999999999999999999999998 99999999997 6899999999988654 4543 6
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|.|+|++ .|++|+|.|++..
T Consensus 191 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 220 (372)
T PRK14296 191 QSAKCNVCNGAGKIIKNKCKNCKGKGKYLE 220 (372)
T ss_pred EEecCCCcCCcceeecccccCCCCceEEEE
Confidence 67899999999998 8999999998753
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.9e-14 Score=124.74 Aligned_cols=87 Identities=28% Similarity=0.553 Sum_probs=79.8
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.++|+++.|.|+|+++|.|.++.+.+++. ..|+.|+|+|. .+|+.|+|+|.+.... |+++.+.
T Consensus 116 ~g~d~~~~l~lslee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-G~~~~~~ 184 (366)
T PRK14294 116 AGADLRYDLTLPFLEAAFGTEKEIRIQKL----------ETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ-GFFSIRT 184 (366)
T ss_pred CCCCceEEEEeeHHHhcCCeEEEEEeeec----------ccCCCCCCccccCCCCcccCCCcCCeEEEEEEe-eeEEEEe
Confidence 46789999999999999999999999998 99999999997 6899999999987654 8888899
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+|+.|+|+|+. .|..|+|.|++..
T Consensus 185 ~C~~C~G~G~~~~~~C~~C~G~g~v~~ 211 (366)
T PRK14294 185 TCPRCRGMGKVIVSPCKTCHGQGRVRV 211 (366)
T ss_pred eCCCCCCcCeecCcCCCCCCCceEeec
Confidence 99999999998 9999999999753
No 22
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=2.1e-14 Score=125.72 Aligned_cols=88 Identities=27% Similarity=0.637 Sum_probs=79.9
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEc---CCCeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVEL---GGDERE 120 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~---~G~~~~ 120 (157)
.+.|+++.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. ..|+.|+|+|.+...+ .|+++.
T Consensus 135 ~g~di~~~l~vtLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~ 204 (397)
T PRK14281 135 PGTDLKIRLKLTLEEIAKGVEKTLKIKKQ----------VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN 204 (397)
T ss_pred CCCCEEEEEEeEHHHHhCCeEEEEEEEee----------ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE
Confidence 46799999999999999999999999998 99999999997 6899999999987654 377778
Q ss_pred eeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 121 FSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 121 ~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+.+|+.|.|+|++ .|+.|+|.|++..
T Consensus 205 ~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 233 (397)
T PRK14281 205 ITACPTCGGEGRVVKDRCPACYGEGIKQG 233 (397)
T ss_pred EEecCCCcceeeeeCCCCCCCCCCccEec
Confidence 8999999999998 9999999999764
No 23
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=3e-14 Score=123.78 Aligned_cols=87 Identities=28% Similarity=0.592 Sum_probs=79.6
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.++|+.+.|.++|+++|.|.++.+.+.+. ..|+.|+|+|. .+|+.|+|+|.+...+ .|+++
T Consensus 110 ~g~d~~~~l~vslee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 179 (371)
T PRK14287 110 QGADLQYTMTLEFKEAVFGKETEIEIPRE----------ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVV 179 (371)
T ss_pred CCCCEEEEEEEEHHHhcCCeEEEEEEeee----------ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEE
Confidence 46899999999999999999999999999 99999999996 7899999999987654 47788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
.+.+|+.|.|+|++ .|..|+|.|++.
T Consensus 180 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 208 (371)
T PRK14287 180 NRRVCHHCEGTGKIIKQKCATCGGKGKVR 208 (371)
T ss_pred EEEeCCCCCCCCccccccCCCCCCeeEEe
Confidence 88999999999998 999999999876
No 24
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=4.1e-14 Score=123.31 Aligned_cols=88 Identities=31% Similarity=0.630 Sum_probs=80.4
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.+.|+++.|.|+|++++.|.++.+.+.+. +.|+.|+|+|. ..|+.|+|+|.+...+ .|+++
T Consensus 126 ~g~di~~~l~vsLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~ 195 (386)
T PRK14289 126 RGSDLRVKVKLNLKEISTGVEKKFKVKKY----------VPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQ 195 (386)
T ss_pred CCCCeEEEEEEEHHHhhCCeEEEEEEEee----------cccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEE
Confidence 46799999999999999999999999998 99999999997 7899999999998765 37788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|.|+|+. .|..|+|.|++..
T Consensus 196 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 225 (386)
T PRK14289 196 TQSTCPTCNGEGKIIKKKCKKCGGEGIVYG 225 (386)
T ss_pred EEEecCCCCccccccCcCCCCCCCCcEEee
Confidence 89999999999998 9999999999764
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=5e-14 Score=122.79 Aligned_cols=87 Identities=26% Similarity=0.609 Sum_probs=79.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
..+|+.+.|.|+|++++.|.++.+.+.+. +.|..|+|+|. ..|+.|+|+|.+... .|+++.+.
T Consensus 128 ~g~di~~~l~vsLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-~g~~~~~~ 196 (382)
T PRK14291 128 KGEDIYQTVEISLEEAYTGTTVSLEVPRY----------VPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR-GGFFRISQ 196 (382)
T ss_pred CCCCEEEEEEEEHHHhhCCEEEEEEEeee----------ccCCCCccccCCCCCCCccCCCCCCceEEEEe-cceEEEEe
Confidence 46899999999999999999999999998 99999999996 789999999998776 36778899
Q ss_pred eCCCCCCCceE--eCCCCCCeeEEEe
Q 031581 123 KCINCDGVGSL--TCTTCQGTGIQPR 146 (157)
Q Consensus 123 ~C~~C~G~G~~--~C~~C~G~G~~~~ 146 (157)
+|+.|.|+|.+ .|.+|+|.|++..
T Consensus 197 ~C~~C~G~G~~~~~C~~C~G~g~v~~ 222 (382)
T PRK14291 197 TCPTCGGEGVLREPCSKCNGRGLVIK 222 (382)
T ss_pred cCCCCCCceEEccCCCCCCCCceEEe
Confidence 99999999977 9999999998763
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.1e-13 Score=120.05 Aligned_cols=87 Identities=30% Similarity=0.580 Sum_probs=78.2
Q ss_pred CCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEc-CCCe--eee
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVEL-GGDE--REF 121 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~-~G~~--~~~ 121 (157)
++|+++.|.++|++++.|.++.+.+.+. +.|+.|+|+|. ..|+.|.|+|++...+ .|++ +.+
T Consensus 122 ~~di~~~l~lsLee~~~G~~~~i~~~r~----------~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~ 191 (365)
T PRK14290 122 DLDIYTNLDISLEDAYYGTEKRIKYRRN----------AMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTV 191 (365)
T ss_pred CCCEEEEEEecHHHhcCCEEEEEEeeec----------ccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEE
Confidence 5799999999999999999999999998 99999999997 7899999999987665 4665 456
Q ss_pred eeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 122 SKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 122 ~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+|+.|.|.|+. .|.+|+|.|++..
T Consensus 192 ~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 219 (365)
T PRK14290 192 TTCRTCGGRGRIPEEKCPRCNGTGTVVV 219 (365)
T ss_pred EeCCCCCCceeEccCCCCCCCCceeEEE
Confidence 899999999998 9999999999764
No 27
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=121.98 Aligned_cols=88 Identities=25% Similarity=0.560 Sum_probs=77.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEc-CCCe--ee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVEL-GGDE--RE 120 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~-~G~~--~~ 120 (157)
.++|+.+.|.++|+++|.|.++.+.+.+. ..|+.|+|+|. .+|+.|+|+|.++... .|.+ +.
T Consensus 122 rg~di~~~l~vtLee~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~ 191 (421)
T PTZ00037 122 RGEDIVSHLKVTLEQIYNGAMRKLAINKD----------VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQT 191 (421)
T ss_pred CCCCEEEEeeeeHHHHhCCCceEEEeecc----------ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEE
Confidence 46799999999999999999999999998 99999999997 7899999999876543 3433 67
Q ss_pred eeeCCCCCCCceE-----eCCCCCCeeEEEe
Q 031581 121 FSKCINCDGVGSL-----TCTTCQGTGIQPR 146 (157)
Q Consensus 121 ~~~C~~C~G~G~~-----~C~~C~G~G~~~~ 146 (157)
+.+|+.|+|+|++ .|.+|+|.|++..
T Consensus 192 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~ 222 (421)
T PTZ00037 192 QSTCNSCNGQGKIIPESKKCKNCSGKGVKKT 222 (421)
T ss_pred EEeCCCCCCcceeccccccCCcCCCcceeee
Confidence 8899999999997 6999999999764
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=1.1e-13 Score=120.37 Aligned_cols=88 Identities=26% Similarity=0.554 Sum_probs=79.2
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.+.|+.+.|.++|++++.|.++.+.+.+. +.|..|+|+|. ..|+.|+|+|.+...+ .|+++
T Consensus 115 kg~di~~~l~vsLee~~~G~~k~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~ 184 (374)
T PRK14293 115 RGDDLRYDLKLDFREAIFGGEKEIRIPHL----------ETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFT 184 (374)
T ss_pred CCCCeEEEEEeeHHHHhCCceEEEEeecc----------ccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEE
Confidence 35789999999999999999999999998 99999999997 6799999999987654 37788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|.|.|+. .|.+|+|.|++..
T Consensus 185 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 214 (374)
T PRK14293 185 QVSECPTCNGTGQVIEDPCDACGGQGVKQV 214 (374)
T ss_pred EEeeCCCCCcceeEeccCCCCCCCCccccc
Confidence 88999999999998 9999999998754
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=1.3e-13 Score=120.01 Aligned_cols=88 Identities=27% Similarity=0.585 Sum_probs=79.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEc---CCCee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVEL---GGDER 119 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~ 119 (157)
.+.|+.+.|.++|++++.|.++.+.+.+. +.|+.|+|+|. ..|+.|.|+|.+...+ .|+++
T Consensus 118 kg~di~~~l~vsLed~~~G~~~~i~~~r~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~ 187 (378)
T PRK14283 118 RGADIYTEVEITLEEAASGVEKDIKVRHT----------KKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMM 187 (378)
T ss_pred CCCCeEEEeeeeHHHHhCCcceEEEeeee----------ccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEE
Confidence 35789999999999999999999999998 99999999997 7899999999997654 37788
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
.+.+|+.|.|+|+. .|..|+|.|++..
T Consensus 188 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 217 (378)
T PRK14283 188 NVTTCPDCQGEGKIVEKPCSNCHGKGVVRE 217 (378)
T ss_pred EEEECCCCCccceecCCCCCCCCCceeecc
Confidence 88999999999998 9999999998764
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=2e-13 Score=118.35 Aligned_cols=88 Identities=24% Similarity=0.517 Sum_probs=79.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-------CcCCCCCcccEEEEEc---CCCe
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-------QRCRFCMGTGSVTVEL---GGDE 118 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-------~~C~~C~GsG~v~~~~---~G~~ 118 (157)
.+.|+++.|.++|++++.|.++++.+.+. ..|+.|+|+|. ..|+.|.|+|++...+ +|++
T Consensus 111 ~g~d~~~~l~~sLee~~~G~~~~v~~~r~----------~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~ 180 (371)
T PRK14292 111 RGDDLETEARITLEQARAGEEVEVEVDRL----------TECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVV 180 (371)
T ss_pred CCCCeEEEEeccHHHHcCCeEEEEEEEee----------ecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceE
Confidence 46789999999999999999999999998 99999999996 6799999999987654 4778
Q ss_pred eeeeeCCCCCCCceE---eCCCCCCeeEEEe
Q 031581 119 REFSKCINCDGVGSL---TCTTCQGTGIQPR 146 (157)
Q Consensus 119 ~~~~~C~~C~G~G~~---~C~~C~G~G~~~~ 146 (157)
+.+.+|+.|.|.|+. .|.+|.|.|++..
T Consensus 181 ~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~ 211 (371)
T PRK14292 181 ETQQPCPTCRGEGQIITDPCTVCRGRGRTLK 211 (371)
T ss_pred EEeeecCCCcccceecCCCCCCCCCceEEee
Confidence 888999999999998 9999999998753
No 31
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.4e-12 Score=108.68 Aligned_cols=86 Identities=29% Similarity=0.580 Sum_probs=78.8
Q ss_pred CCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEc---CCCe-ee
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVEL---GGDE-RE 120 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~---~G~~-~~ 120 (157)
+.|+++.|+++|+++|+|.++++.+.++ .+|+.|+|+|. ..|..|.|+|..+..+ .|++ ++
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~----------~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~ 169 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRN----------FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSP 169 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccC----------ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccc
Confidence 7899999999999999999999999999 99999999998 6799999999987665 3566 67
Q ss_pred eeeCCCCCCCceE-----eCCCCCCeeEEE
Q 031581 121 FSKCINCDGVGSL-----TCTTCQGTGIQP 145 (157)
Q Consensus 121 ~~~C~~C~G~G~~-----~C~~C~G~G~~~ 145 (157)
+..|..|+|+|.. .|+.|.|++++.
T Consensus 170 q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~ 199 (337)
T KOG0712|consen 170 QLVCDSCNGSGETISLKDRCKTCSGAKVVR 199 (337)
T ss_pred eeEeccCCCccccccccccCcccccchhhh
Confidence 8999999999997 999999999876
No 32
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.25 E-value=1.2e-11 Score=83.15 Aligned_cols=53 Identities=42% Similarity=0.978 Sum_probs=44.0
Q ss_pred CCCCCCCCc------CcCCCCCcccEEEEEc---CCCeeeeeeCCCCCCCceE----eCCCCCCee
Q 031581 90 CFPCSGSGA------QRCRFCMGTGSVTVEL---GGDEREFSKCINCDGVGSL----TCTTCQGTG 142 (157)
Q Consensus 90 C~~C~GsG~------~~C~~C~GsG~v~~~~---~G~~~~~~~C~~C~G~G~~----~C~~C~G~G 142 (157)
|+.|+|+|+ .+|+.|+|+|++...+ ++.++++.+|+.|+|+|++ +|++|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999998 8999999999998765 3567899999999999998 799999986
No 33
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1e-09 Score=95.69 Aligned_cols=85 Identities=26% Similarity=0.482 Sum_probs=77.2
Q ss_pred CCCccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-------------CcCCC
Q 031581 40 APYPCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-------------QRCRF 103 (157)
Q Consensus 40 ~~~p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-------------~~C~~ 103 (157)
...|++.+|+..++.+.|+..+.+..+.+..+....+.. +|++++....+|++|+|+|. ++|+.
T Consensus 109 ~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~ 188 (371)
T COG0484 109 PNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPT 188 (371)
T ss_pred CCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCC
Confidence 334888999999999999999999999999999888876 88888889999999999996 79999
Q ss_pred CCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 104 CMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 104 C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
|+|+|.++ ..+|+.|+|.|.+
T Consensus 189 C~G~G~~i---------~~pC~~C~G~G~v 209 (371)
T COG0484 189 CNGTGKII---------KDPCGKCKGKGRV 209 (371)
T ss_pred CccceeEC---------CCCCCCCCCCCeE
Confidence 99999998 4799999999986
No 34
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.29 E-value=5.5e-07 Score=60.45 Aligned_cols=45 Identities=38% Similarity=0.815 Sum_probs=33.7
Q ss_pred cccccCCCceeCCCCCCCCc---------------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCc
Q 031581 79 DNAAKRENTQPCFPCSGSGA---------------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVG 131 (157)
Q Consensus 79 ~~~~~~~~~~~C~~C~GsG~---------------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G 131 (157)
+|+.+......|+.|+|+|. ++|+.|+|+|+++ . ..+|+.|+|.|
T Consensus 7 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~-------~~~C~~C~G~g 66 (66)
T PF00684_consen 7 TGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E-------KDPCKTCKGSG 66 (66)
T ss_dssp TSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T-------SSB-SSSTTSS
T ss_pred cccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C-------CCCCCCCCCcC
Confidence 45666777899999999997 7999999999997 2 48999999986
No 35
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=1.9e-06 Score=75.30 Aligned_cols=82 Identities=24% Similarity=0.502 Sum_probs=69.0
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|
T Consensus 111 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 190 (377)
T PRK14298 111 PRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC 190 (377)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence 456668999999999999999999999888777653 56666666789999999995 589999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|+.|.|.|.+
T Consensus 191 ~G~G~~~---------~~~C~~C~G~g~v 210 (377)
T PRK14298 191 HGRGQVI---------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCccc---------CCCCCCCCCccEE
Confidence 9999986 3679999999976
No 36
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=2.2e-06 Score=74.82 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=68.5
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+.+.|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|
T Consensus 119 ~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (372)
T PRK14296 119 STKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC 198 (372)
T ss_pred cCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence 455668999999999999999999998888777754 56555666789999999996 389999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|+.|+|.|.+
T Consensus 199 ~G~G~~~---------~~~C~~C~G~g~v 218 (372)
T PRK14296 199 NGAGKII---------KNKCKNCKGKGKY 218 (372)
T ss_pred CCcceee---------cccccCCCCceEE
Confidence 9999987 3679999999875
No 37
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=2.3e-06 Score=74.85 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=68.8
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
++...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|
T Consensus 109 ~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (378)
T PRK14278 109 VRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC 188 (378)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence 445668999999999999999999998888777653 66666666789999999995 579999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+|+|+++ ..+|+.|.|.|.+
T Consensus 189 ~G~G~~~---------~~~C~~C~G~g~v 208 (378)
T PRK14278 189 RGVGEVI---------PDPCHECAGDGRV 208 (378)
T ss_pred Cccceee---------CCCCCCCCCceeE
Confidence 9999987 3679999999975
No 38
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.11 E-value=2.1e-06 Score=74.74 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=68.7
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
++.+.|+..++.++|+..+.+..+-+.......+.. +|+..+.....|+.|+|+|. .+|+.|.|+|
T Consensus 116 ~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 195 (365)
T PRK14285 116 HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNG 195 (365)
T ss_pred CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcc
Confidence 445669999999999999999999998888777653 55556666789999999995 5899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 196 ~~~---------~~~C~~C~G~g~v 211 (365)
T PRK14285 196 KII---------SNPCKSCKGKGSL 211 (365)
T ss_pred ccc---------CCCCCCCCCCCEE
Confidence 987 3689999999975
No 39
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=1.9e-06 Score=75.67 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=68.8
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|+...|+..++.+.|+-.+.+..+-+.......+.. +|+.......+|+.|+|+|. ++|+.|+|+|
T Consensus 143 ~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 222 (392)
T PRK14279 143 PRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTG 222 (392)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCcee
Confidence 455668999999999999999999888887776653 66666666789999999996 6899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 223 ~~i---------~~~C~~C~G~g~v 238 (392)
T PRK14279 223 SII---------EDPCEECKGTGVT 238 (392)
T ss_pred EEe---------CCcCCCCCCCeEE
Confidence 987 3679999999876
No 40
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=2.8e-06 Score=74.12 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=68.3
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
++...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|.|+|
T Consensus 120 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 199 (372)
T PRK14286 120 PQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKG 199 (372)
T ss_pred CCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCcee
Confidence 445568999999999999999999998888776653 55555566689999999995 5899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 200 ~~~---------~~~C~~C~G~g~~ 215 (372)
T PRK14286 200 TVI---------SNPCKTCGGQGLQ 215 (372)
T ss_pred eEe---------cccCCCCCCCcEE
Confidence 987 3679999999986
No 41
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.06 E-value=3.9e-06 Score=73.21 Aligned_cols=82 Identities=24% Similarity=0.518 Sum_probs=68.6
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|+...++..++.+.|+-.+.+..+-+.......+.. +|.........|+.|+|+|. .+|+.|.|+|
T Consensus 115 ~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 194 (372)
T PRK14300 115 KVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNG 194 (372)
T ss_pred CCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccc
Confidence 345668999999999999999999888888777653 55555666789999999996 5799999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 195 ~~~---------~~~C~~C~G~g~v 210 (372)
T PRK14300 195 QII---------KNPCKKCHGMGRY 210 (372)
T ss_pred eEe---------CCCCCCCCCceEE
Confidence 987 3689999999986
No 42
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.02 E-value=4.1e-06 Score=72.92 Aligned_cols=82 Identities=18% Similarity=0.383 Sum_probs=67.4
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
++...|+..++.+.|+..+.+..+-++......+.. +|+........|+.|+|+|. ++|+.|
T Consensus 122 ~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 201 (369)
T PRK14282 122 ARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERC 201 (369)
T ss_pred CCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCC
Confidence 445568989999999999999999998888776654 55555566789999999996 579999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|..|.|.|.+
T Consensus 202 ~G~G~~~---------~~~C~~C~G~g~v 221 (369)
T PRK14282 202 GGTGKIP---------GEYCHECGGSGRI 221 (369)
T ss_pred CCcceeC---------CCCCCCCCCceeE
Confidence 9999986 4679999999964
No 43
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.00 E-value=3.3e-06 Score=73.76 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=68.0
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. ++|+.|
T Consensus 113 ~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (376)
T PRK14280 113 PRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC 192 (376)
T ss_pred cccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence 445668889999999999999999998888777653 55555566789999999985 479999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+|+|+++ ..+|+.|.|.|.+
T Consensus 193 ~G~G~~~---------~~~C~~C~G~g~v 212 (376)
T PRK14280 193 NGTGQEI---------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCcee---------cCCCCCCCCceEE
Confidence 9999986 3679999999975
No 44
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=3e-06 Score=74.00 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=67.8
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. .+|+.|+|+|
T Consensus 114 ~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 193 (373)
T PRK14301 114 PQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEG 193 (373)
T ss_pred CCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCcee
Confidence 445668888999999999999999888887776653 55555566789999999996 6899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|+.|+|.|.+
T Consensus 194 ~~~---------~~~C~~C~G~g~v 209 (373)
T PRK14301 194 RVI---------THPCPKCKGSGIV 209 (373)
T ss_pred eec---------CCCCCCCCCCcee
Confidence 987 3679999999975
No 45
>PRK14284 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=4e-06 Score=73.56 Aligned_cols=82 Identities=21% Similarity=0.386 Sum_probs=68.6
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|+|+|
T Consensus 128 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 207 (391)
T PRK14284 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEG 207 (391)
T ss_pred cCCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCC
Confidence 345568889999999999999999988887777653 56666677799999999997 6899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|+.|.|.|.+
T Consensus 208 ~~~---------~~~C~~C~G~g~v 223 (391)
T PRK14284 208 RVI---------TDPCSVCRGQGRI 223 (391)
T ss_pred ccc---------CCcCCCCCCccee
Confidence 986 3679999999875
No 46
>PRK14277 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=6.5e-06 Score=72.15 Aligned_cols=82 Identities=21% Similarity=0.492 Sum_probs=67.5
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. ++|+.|
T Consensus 125 ~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 204 (386)
T PRK14277 125 PQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRC 204 (386)
T ss_pred CCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCC
Confidence 445568888999999999999999988888776653 55555566789999999986 479999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|..|.|.|.+
T Consensus 205 ~G~G~~~---------~~~C~~C~G~g~v 224 (386)
T PRK14277 205 HGEGKII---------TDPCNKCGGTGRI 224 (386)
T ss_pred Ccceeec---------cCCCCCCCCCcEE
Confidence 9999987 3679999999986
No 47
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=4.2e-06 Score=73.45 Aligned_cols=82 Identities=21% Similarity=0.472 Sum_probs=68.2
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
++...|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|.|+|
T Consensus 136 ~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 215 (389)
T PRK14295 136 PRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRG 215 (389)
T ss_pred CCCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCccee
Confidence 445668989999999999999999888887777654 55555566789999999996 6899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 216 ~~~---------~~~C~~C~G~g~~ 231 (389)
T PRK14295 216 LIA---------DDPCLVCKGSGRA 231 (389)
T ss_pred EEe---------ccCCCCCCCCceE
Confidence 987 3689999999875
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.98 E-value=5.2e-06 Score=72.21 Aligned_cols=82 Identities=26% Similarity=0.531 Sum_probs=68.0
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|+.+.|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. ++|+.|.|+|
T Consensus 112 ~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 191 (371)
T PRK10767 112 ARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRG 191 (371)
T ss_pred CCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCce
Confidence 456678999999999999999999998888877653 55555556689999999996 4699999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 192 ~~~---------~~~C~~C~G~g~v 207 (371)
T PRK10767 192 KII---------KDPCKKCHGQGRV 207 (371)
T ss_pred eEC---------CCCCCCCCCCceE
Confidence 986 3679999999975
No 49
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.97 E-value=5.8e-06 Score=71.92 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=67.4
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
++...|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. ++|+.|.|+|
T Consensus 114 ~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 193 (366)
T PRK14294 114 VRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMG 193 (366)
T ss_pred CCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcC
Confidence 445668999999999999999999888888776643 45555556789999999996 5899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 194 ~~~---------~~~C~~C~G~g~v 209 (366)
T PRK14294 194 KVI---------VSPCKTCHGQGRV 209 (366)
T ss_pred eec---------CcCCCCCCCceEe
Confidence 986 4679999999975
No 50
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.97 E-value=3.7e-06 Score=73.55 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=67.5
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+.+.|+..++.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|
T Consensus 116 ~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 195 (380)
T PRK14276 116 PRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVC 195 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCC
Confidence 445668888999999999999999888888777653 55555566789999999985 579999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|..|.|.|.+
T Consensus 196 ~G~G~~~---------~~~C~~C~G~g~~ 215 (380)
T PRK14276 196 HGTGKEI---------KEPCQTCHGTGHE 215 (380)
T ss_pred CCCCccc---------cCCCCCCCCceEE
Confidence 9999987 3679999999975
No 51
>PRK14291 chaperone protein DnaJ; Provisional
Probab=97.94 E-value=1e-05 Score=70.75 Aligned_cols=81 Identities=22% Similarity=0.532 Sum_probs=66.9
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
|..+.|+...+.+.|+..+.+..+-+.......+.. +|+........|+.|+|+|. ++|+.|.|+|
T Consensus 126 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 205 (382)
T PRK14291 126 PVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG 205 (382)
T ss_pred ccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCce
Confidence 445668999999999999999999998888777643 55556666789999999996 6899999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.+ ..+|..|+|.|.+
T Consensus 206 ~~----------~~~C~~C~G~g~v 220 (382)
T PRK14291 206 VL----------REPCSKCNGRGLV 220 (382)
T ss_pred EE----------ccCCCCCCCCceE
Confidence 53 3679999999975
No 52
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.90 E-value=8.1e-06 Score=75.00 Aligned_cols=58 Identities=33% Similarity=0.631 Sum_probs=46.7
Q ss_pred eeCCCCCCCCc-----CcCCCCCcccEEEEEcC--------C----CeeeeeeCCCCCCCceE----eCCCCCCeeEEE
Q 031581 88 QPCFPCSGSGA-----QRCRFCMGTGSVTVELG--------G----DEREFSKCINCDGVGSL----TCTTCQGTGIQP 145 (157)
Q Consensus 88 ~~C~~C~GsG~-----~~C~~C~GsG~v~~~~~--------G----~~~~~~~C~~C~G~G~~----~C~~C~G~G~~~ 145 (157)
..|+.|+|+|. ..|+.|+|+|.+..... + .+....+|+.|+|+|.+ .|+.|.|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 67999999998 77999999999843221 1 12345799999999998 999999999865
No 53
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.89 E-value=8.2e-06 Score=71.32 Aligned_cols=82 Identities=22% Similarity=0.468 Sum_probs=67.2
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+.+.|+..++.+.|+..+.+..+-+.......+.. +|..+......|+.|+|+|. .+|+.|
T Consensus 118 ~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 197 (380)
T PRK14297 118 PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKC 197 (380)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCC
Confidence 445668999999999999999999988888776653 55555556789999999985 579999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+|+|.++ ..+|..|.|.|.+
T Consensus 198 ~G~G~~~---------~~~C~~C~G~g~v 217 (380)
T PRK14297 198 GGSGKVI---------EDPCNKCHGKGKV 217 (380)
T ss_pred CCCceEc---------CCCCCCCCCCeEE
Confidence 9999986 3689999999964
No 54
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.88 E-value=8e-06 Score=71.28 Aligned_cols=82 Identities=27% Similarity=0.528 Sum_probs=67.9
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. .+|+.|
T Consensus 108 ~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 187 (371)
T PRK14287 108 PRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHC 187 (371)
T ss_pred CCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCC
Confidence 345668999999999999999999998888777654 55555566789999999995 579999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++ ..+|..|.|.|.+
T Consensus 188 ~G~G~~~---------~~~C~~C~G~g~v 207 (371)
T PRK14287 188 EGTGKII---------KQKCATCGGKGKV 207 (371)
T ss_pred CCCCccc---------cccCCCCCCeeEE
Confidence 9999986 3679999999876
No 55
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9.7e-06 Score=69.94 Aligned_cols=60 Identities=40% Similarity=0.837 Sum_probs=36.7
Q ss_pred eeCCCCCCCCcCcCCCCCcccEEEEEc---------CC----Ce-----------eeeeeCCCCCCCceEeCCCCCCeeE
Q 031581 88 QPCFPCSGSGAQRCRFCMGTGSVTVEL---------GG----DE-----------REFSKCINCDGVGSLTCTTCQGTGI 143 (157)
Q Consensus 88 ~~C~~C~GsG~~~C~~C~GsG~v~~~~---------~G----~~-----------~~~~~C~~C~G~G~~~C~~C~G~G~ 143 (157)
..|-.|.|.|+.+|+.|+|.|...... -| .. ....+|++|+|+|..+|.+|.|+|-
T Consensus 188 ~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgs 267 (406)
T KOG2813|consen 188 TFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGS 267 (406)
T ss_pred hhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCccc
Confidence 557777788887788888777321100 01 00 1245677777777777777777776
Q ss_pred EEee
Q 031581 144 QPRY 147 (157)
Q Consensus 144 ~~~~ 147 (157)
.-.|
T Consensus 268 ll~~ 271 (406)
T KOG2813|consen 268 LLNY 271 (406)
T ss_pred eeee
Confidence 5443
No 56
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.85 E-value=1.2e-05 Score=70.74 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=65.8
Q ss_pred cccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCCC
Q 031581 44 CIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFCM 105 (157)
Q Consensus 44 ~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C~ 105 (157)
+...|+..++.+.|+..+.+..+-+.......+.. +|+... ....|+.|+|+|. ++|+.|.
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 212 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCG 212 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCc
Confidence 34568999999999999999999988888777653 454444 4678999999995 5799999
Q ss_pred cccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 106 GTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 106 GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
|+|+++ ..+|..|.|.|.+
T Consensus 213 G~G~~~---------~~~C~~C~G~g~v 231 (397)
T PRK14281 213 GEGRVV---------KDRCPACYGEGIK 231 (397)
T ss_pred ceeeee---------CCCCCCCCCCccE
Confidence 999987 3679999999886
No 57
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.85 E-value=1.1e-05 Score=70.63 Aligned_cols=82 Identities=21% Similarity=0.433 Sum_probs=67.8
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
+....|+..++.+.|+..+.+..+-+.......+.. +|.........|+.|+|+|. ..|+.|
T Consensus 124 ~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C 203 (386)
T PRK14289 124 VFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTC 203 (386)
T ss_pred CCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCC
Confidence 345668999999999999999999998888777643 55555566789999999987 379999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|.++ ..+|..|.|.|.+
T Consensus 204 ~G~G~~~---------~~~C~~C~G~g~v 223 (386)
T PRK14289 204 NGEGKII---------KKKCKKCGGEGIV 223 (386)
T ss_pred Ccccccc---------CcCCCCCCCCcEE
Confidence 9999987 3679999999975
No 58
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.84 E-value=1.1e-05 Score=70.29 Aligned_cols=81 Identities=20% Similarity=0.427 Sum_probs=63.6
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCccc
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTG 108 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG 108 (157)
++...|+..++.+.|+..+.+..+-+.......+.. +|+... ....|+.|+|+|. ++|+.|.|+|
T Consensus 110 ~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G 188 (369)
T PRK14288 110 SSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKG 188 (369)
T ss_pred CCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCc
Confidence 345568888889999988888888887776665532 454443 4588999999996 5799999999
Q ss_pred EEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 109 SVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 109 ~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+++ ..+|..|.|.|.+
T Consensus 189 ~~~---------~~~C~~C~G~g~v 204 (369)
T PRK14288 189 KII---------KTPCQACKGKTYI 204 (369)
T ss_pred eEc---------cccCccCCCcceE
Confidence 986 3679999999875
No 59
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.84 E-value=1.1e-05 Score=69.59 Aligned_cols=82 Identities=24% Similarity=0.509 Sum_probs=67.1
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
++...|+..++.+.|+-.+.+..+-+..+....+.. +|.........|+.|+|+|. ++|+.|
T Consensus 113 ~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (354)
T TIGR02349 113 PRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTC 192 (354)
T ss_pred CCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCC
Confidence 445668889999999999999999888887776643 55555555789999999985 589999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+++. .+|..|.|.|.+
T Consensus 193 ~G~G~~~~---------~~C~~C~G~g~v 212 (354)
T TIGR02349 193 GGEGKIIK---------EPCSTCKGKGRV 212 (354)
T ss_pred CCcceecC---------CCCCCCCCCcEe
Confidence 99999873 579999999976
No 60
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.7e-06 Score=69.41 Aligned_cols=86 Identities=27% Similarity=0.539 Sum_probs=71.4
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFS 122 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~ 122 (157)
.+.+..+.+.+.|+++..|..+.+.+... ..|.+|.|.|. ..|..|.|.|.+.......+...
T Consensus 136 ~~~~~~~d~~~~f~~A~~g~~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~- 204 (288)
T KOG0715|consen 136 PDKDQYYDLSLDFKEAVRGSKKRISFNVL----------SDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY- 204 (288)
T ss_pred cCcccccccccCHHHHhhccccceEEEee----------cccccccCcCcccccccccchhhhCcccccccccCCccee-
Confidence 34567778999999999999888888887 89999999998 89999999997654333444334
Q ss_pred eCCCCCCCceE---eCCCCCCeeEEE
Q 031581 123 KCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 123 ~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
+|..|.|.|.+ .|..|.|.|.+.
T Consensus 205 ~~~~c~~~~~~~~~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 205 TCSYCLGRGLVLRDNCQACSGAGQVR 230 (288)
T ss_pred ecccccccceeccchHHHhhcchhhh
Confidence 99999999998 699999999654
No 61
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.74 E-value=1.7e-05 Score=70.49 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=66.2
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
++.+.|+..++.+.|+..+.+..+-+.......+.. +|... .....|+.|+|+|. ++|+.|
T Consensus 120 ~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (421)
T PTZ00037 120 KKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK-DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSC 198 (421)
T ss_pred ccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCC-CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCC
Confidence 345668888999999999999999888887777653 45433 34578999999994 489999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+|+|+++.. ..+|..|+|.|.+
T Consensus 199 ~G~G~~i~~-------~~~C~~C~G~g~v 220 (421)
T PTZ00037 199 NGQGKIIPE-------SKKCKNCSGKGVK 220 (421)
T ss_pred CCcceeccc-------cccCCcCCCccee
Confidence 999998742 4789999999976
No 62
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.73 E-value=2.5e-05 Score=68.19 Aligned_cols=82 Identities=24% Similarity=0.461 Sum_probs=66.2
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...++..++.+.|+-.+.+..+-++......+.. +|.........|+.|+|+|. .+|..|
T Consensus 113 ~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (374)
T PRK14293 113 PQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTC 192 (374)
T ss_pred ccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCC
Confidence 344557888899999999999999888887776653 45555556689999999996 479999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|.|+++ ..+|..|.|.|.+
T Consensus 193 ~G~G~~~---------~~~C~~C~G~g~v 212 (374)
T PRK14293 193 NGTGQVI---------EDPCDACGGQGVK 212 (374)
T ss_pred CcceeEe---------ccCCCCCCCCccc
Confidence 9999986 3679999999975
No 63
>PRK14290 chaperone protein DnaJ; Provisional
Probab=97.71 E-value=2.9e-05 Score=67.53 Aligned_cols=78 Identities=22% Similarity=0.426 Sum_probs=63.7
Q ss_pred cccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCCCcc
Q 031581 46 RAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFCMGT 107 (157)
Q Consensus 46 ~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C~Gs 107 (157)
..|+..++.+.|+..+.+..+-+.......+.. +|.... ....|+.|+|+|. ++|+.|.|.
T Consensus 122 ~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~ 200 (365)
T PRK14290 122 DLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGR 200 (365)
T ss_pred CCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCC-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCc
Confidence 458889999999999999998888887777653 444333 4578999999994 589999999
Q ss_pred cEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 108 GSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 108 G~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
|+++ ..+|+.|+|.|.+
T Consensus 201 G~~~---------~~~C~~C~G~g~v 217 (365)
T PRK14290 201 GRIP---------EEKCPRCNGTGTV 217 (365)
T ss_pred eeEc---------cCCCCCCCCceeE
Confidence 9986 4789999999985
No 64
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.1e-05 Score=69.53 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=6.5
Q ss_pred CcCCCCCcccEEE
Q 031581 99 QRCRFCMGTGSVT 111 (157)
Q Consensus 99 ~~C~~C~GsG~v~ 111 (157)
..|..|.|+|.+.
T Consensus 188 ~~ch~c~gRG~~v 200 (406)
T KOG2813|consen 188 TFCHACLGRGAMV 200 (406)
T ss_pred hhhhcccCCCcee
Confidence 4455555555443
No 65
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.66 E-value=2.7e-05 Score=67.98 Aligned_cols=82 Identities=22% Similarity=0.480 Sum_probs=66.8
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|+...|+..++.+.|+-.+.+..+-+.......+.. +|..+......|+.|+|+|. .+|+.|
T Consensus 116 ~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 116 PQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred ccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 445568989999999999999998888877776643 55555566789999999987 469999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+|+.+ ..+|..|.|.|.+
T Consensus 196 ~G~G~~~---------~~~C~~C~G~g~v 215 (378)
T PRK14283 196 QGEGKIV---------EKPCSNCHGKGVV 215 (378)
T ss_pred Cccceec---------CCCCCCCCCceee
Confidence 9999986 3679999999975
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.32 E-value=0.00015 Score=63.04 Aligned_cols=82 Identities=22% Similarity=0.504 Sum_probs=64.1
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccC-CCceeCCCCCCCCc---------------CcCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKR-ENTQPCFPCSGSGA---------------QRCRF 103 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~-~~~~~C~~C~GsG~---------------~~C~~ 103 (157)
|+...|+...+.+.|+..+.+..+-+.......+.. +|.... .....|..|+|+|. .+|..
T Consensus 109 ~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~ 188 (371)
T PRK14292 109 PARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPT 188 (371)
T ss_pred ccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCC
Confidence 345668888899999999999888888877776643 333322 23588999999996 37999
Q ss_pred CCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 104 CMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 104 C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
|.|.|+.+ ..+|..|.|.|.+
T Consensus 189 C~G~G~~~---------~~~C~~C~G~g~v 209 (371)
T PRK14292 189 CRGEGQII---------TDPCTVCRGRGRT 209 (371)
T ss_pred Ccccceec---------CCCCCCCCCceEE
Confidence 99999986 4789999999875
No 67
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00032 Score=64.79 Aligned_cols=45 Identities=40% Similarity=1.002 Sum_probs=35.6
Q ss_pred eeCCCCCCCCc------------------------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE-eCCCCCC
Q 031581 88 QPCFPCSGSGA------------------------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQG 140 (157)
Q Consensus 88 ~~C~~C~GsG~------------------------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G 140 (157)
..|+-|+|+|- ..|+.|.|.|.+.. ..+|+.|.|+|++ .|..|.-
T Consensus 19 e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v--------~~~c~~c~G~gkv~~c~~cG~ 88 (715)
T COG1107 19 EECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV--------YDTCPECGGTGKVLTCDICGD 88 (715)
T ss_pred eecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE--------EeecccCCCceeEEeeccccc
Confidence 67888888884 68889999988875 4788999998887 6666653
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.81 E-value=0.0011 Score=49.26 Aligned_cols=34 Identities=44% Similarity=0.969 Sum_probs=28.2
Q ss_pred eeCCCCCCCCc------------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 88 QPCFPCSGSGA------------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 88 ~~C~~C~GsG~------------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
..|+.|+|+|. +.|+.|.|+|++ .|..|+|.|..
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~------------~C~~C~G~G~~ 98 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL------------TCTTCQGSGIQ 98 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee------------eCCCCCCCEEE
Confidence 48999999886 589999999963 39999999875
No 69
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.48 E-value=0.0027 Score=51.04 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=6.5
Q ss_pred CcCCCCCcccEEE
Q 031581 99 QRCRFCMGTGSVT 111 (157)
Q Consensus 99 ~~C~~C~GsG~v~ 111 (157)
..|+.|+|+|.++
T Consensus 100 ~~C~~C~G~G~~i 112 (186)
T TIGR02642 100 CKCPRCRGTGLIQ 112 (186)
T ss_pred CcCCCCCCeeEEe
Confidence 4455555555544
No 70
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.15 E-value=0.0037 Score=50.26 Aligned_cols=24 Identities=38% Similarity=0.912 Sum_probs=12.9
Q ss_pred eeCCCCCCCCc-----CcCCCCCcccEEE
Q 031581 88 QPCFPCSGSGA-----QRCRFCMGTGSVT 111 (157)
Q Consensus 88 ~~C~~C~GsG~-----~~C~~C~GsG~v~ 111 (157)
..|+.|+|+|. ..|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 45555555554 1355555555554
No 71
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0089 Score=50.69 Aligned_cols=54 Identities=28% Similarity=0.687 Sum_probs=44.6
Q ss_pred CCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceEeCCCCC
Q 031581 85 ENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTCTTCQ 139 (157)
Q Consensus 85 ~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~~C~~C~ 139 (157)
...-.|..|.|.+...|..|+|+=++... ........+|..|+--|.++|+.|.
T Consensus 227 ~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-~~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 227 EGGGVCESCGGARFLPCSNCHGSCKVHEE-EEDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCcCCCcCCcceEecCCCCCceeeeee-ccCCCcEEECcccCCCCceeCCccC
Confidence 33478999999999999999999998753 1233456899999999999999995
No 72
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.74 E-value=0.013 Score=45.19 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=33.5
Q ss_pred CceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceEeC
Q 031581 86 NTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSLTC 135 (157)
Q Consensus 86 ~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~~C 135 (157)
....|..|.|.+...|..|+|+=++............+|+.|+--|.++|
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 44679999999999999999999987532101122345555555554444
No 73
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.011 Score=51.42 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=61.9
Q ss_pred cccCCCCeEEEEEEecceeeeeeEEeEeeeeee-cccccC-CCceeCCCCCCCCc----------------CcCCCCCcc
Q 031581 46 RAELDQNTVVAISVGLVSVAVGIGIPIFYETQI-DNAAKR-ENTQPCFPCSGSGA----------------QRCRFCMGT 107 (157)
Q Consensus 46 ~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~-~~~~~~-~~~~~C~~C~GsG~----------------~~C~~C~Gs 107 (157)
..|.-.++.+.|+-.+.+.......+....+.. ++.... .....|..|.|+|. .+|..|.|+
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~ 179 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGS 179 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCc
Confidence 457888999999999999888877666555543 332222 33357999999997 789999999
Q ss_pred cEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 108 GSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 108 G~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
|..+. ....|+.|.|++.+
T Consensus 180 G~~~~-------~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 180 GETIS-------LKDRCKTCSGAKVV 198 (337)
T ss_pred ccccc-------ccccCcccccchhh
Confidence 99753 25899999999886
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.75 E-value=0.61 Score=35.97 Aligned_cols=34 Identities=29% Similarity=0.772 Sum_probs=21.1
Q ss_pred CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE------------eCCCCCCeeEE
Q 031581 99 QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL------------TCTTCQGTGIQ 144 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~------------~C~~C~G~G~~ 144 (157)
..|..|.|.+.+ +|..|+|.-++ +|+.|+-.|++
T Consensus 100 ~~C~~Cgg~rfv------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARFV------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCeE------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 457777776664 46667665332 67777766654
No 75
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=84.98 E-value=0.68 Score=38.65 Aligned_cols=26 Identities=35% Similarity=0.760 Sum_probs=18.6
Q ss_pred eeCCCC---CCCCcCcCCCCCcccEEEEE
Q 031581 88 QPCFPC---SGSGAQRCRFCMGTGSVTVE 113 (157)
Q Consensus 88 ~~C~~C---~GsG~~~C~~C~GsG~v~~~ 113 (157)
..|++| .|.+..+||.|+|+|++-+.
T Consensus 25 ~~~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 25 ISSFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred cccCccccccCCCCCcCCCCcCCccCCcc
Confidence 444444 56666899999999998654
No 76
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=1.4 Score=37.56 Aligned_cols=22 Identities=32% Similarity=0.866 Sum_probs=10.5
Q ss_pred eeCCCCCCCceEeCCCCCCeeE
Q 031581 122 SKCINCDGVGSLTCTTCQGTGI 143 (157)
Q Consensus 122 ~~C~~C~G~G~~~C~~C~G~G~ 143 (157)
..|..|.|.++++|..|+|+-.
T Consensus 230 ~~C~~CGg~rFlpC~~C~GS~k 251 (281)
T KOG2824|consen 230 GVCESCGGARFLPCSNCHGSCK 251 (281)
T ss_pred CcCCCcCCcceEecCCCCCcee
Confidence 3444444444445555544443
No 77
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.66 E-value=0.89 Score=44.53 Aligned_cols=37 Identities=27% Similarity=0.673 Sum_probs=19.7
Q ss_pred cCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCceEeCCCCCCeeEEEeee
Q 031581 100 RCRFCMGTGSVTVELGGDE-REFSKCINCDGVGSLTCTTCQGTGIQPRYL 148 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G~~~C~~C~G~G~~~~~l 148 (157)
.|+.|.|.|.+.... +++ -... +|+.|+|..+.+..|
T Consensus 738 ~C~~C~G~G~~~~~~-~f~~~~~~-----------~C~~C~G~R~~~e~l 775 (924)
T TIGR00630 738 RCEACQGDGVIKIEM-HFLPDVYV-----------PCEVCKGKRYNRETL 775 (924)
T ss_pred CCCCCccceEEEEEc-cCCCCccc-----------CCCCcCCceeChHHH
Confidence 477777777766532 221 1123 566666666555443
No 78
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=82.03 E-value=0.51 Score=39.41 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=23.5
Q ss_pred eeeeCCCCCCCceEeCCCCCCeeEEEeee
Q 031581 120 EFSKCINCDGVGSLTCTTCQGTGIQPRYL 148 (157)
Q Consensus 120 ~~~~C~~C~G~G~~~C~~C~G~G~~~~~l 148 (157)
...++-.-.|++.++|++|+|+|.+|+..
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 45677778888888999999999988755
No 79
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=78.51 E-value=1.6 Score=42.94 Aligned_cols=38 Identities=26% Similarity=0.680 Sum_probs=20.9
Q ss_pred cCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCceEeCCCCCCeeEEEeeee
Q 031581 100 RCRFCMGTGSVTVELGGDE-REFSKCINCDGVGSLTCTTCQGTGIQPRYLD 149 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G~~~C~~C~G~G~~~~~l~ 149 (157)
.|+.|.|.|.+.... +.+ -... .|+.|+|+.+.+..|.
T Consensus 740 ~C~~C~G~G~~~~~~-~f~~~~~~-----------~C~~C~G~R~~~e~l~ 778 (943)
T PRK00349 740 RCEACQGDGVIKIEM-HFLPDVYV-----------PCDVCKGKRYNRETLE 778 (943)
T ss_pred CCCcccccceEEEEe-ccCCCccc-----------cCccccCccccccceE
Confidence 477777777776542 111 1122 5666666666655443
No 80
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.39 E-value=0.92 Score=44.44 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=5.0
Q ss_pred CCCCCcccEE
Q 031581 101 CRFCMGTGSV 110 (157)
Q Consensus 101 C~~C~GsG~v 110 (157)
|+.|.|.|.+
T Consensus 277 Cp~C~G~G~~ 286 (924)
T TIGR00630 277 CPECSGLGIK 286 (924)
T ss_pred CCCCccceee
Confidence 5555555544
No 81
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=75.80 E-value=5.4 Score=25.23 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.3
Q ss_pred CcCCCCCcccEEEE
Q 031581 99 QRCRFCMGTGSVTV 112 (157)
Q Consensus 99 ~~C~~C~GsG~v~~ 112 (157)
..||+|.|....++
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 36889999888443
No 82
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.23 E-value=1.1 Score=38.15 Aligned_cols=46 Identities=33% Similarity=0.853 Sum_probs=36.4
Q ss_pred cccccCCCceeCCCCCCCCc-----------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 79 DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 79 ~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.|+.+......|..|.|.|. .+|..|.|.|.+.. ..|..|.|.|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~---------~~c~~~~g~~~v 229 (288)
T KOG0715|consen 173 SGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR---------DNCQACSGAGQV 229 (288)
T ss_pred cCcccccccccchhhhCcccccccccCCcceeecccccccceecc---------chHHHhhcchhh
Confidence 45555667799999999993 45999999999874 339999998864
No 83
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=74.23 E-value=1.8 Score=42.58 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=3.4
Q ss_pred CCCCCcccE
Q 031581 101 CRFCMGTGS 109 (157)
Q Consensus 101 C~~C~GsG~ 109 (157)
|+.|+|.|.
T Consensus 279 Cp~C~G~G~ 287 (943)
T PRK00349 279 CPTCDGLGV 287 (943)
T ss_pred CCcCCCcee
Confidence 333333333
No 84
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=73.12 E-value=2.4 Score=44.37 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=17.4
Q ss_pred cCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCc
Q 031581 100 RCRFCMGTGSVTVELGGDE-REFSKCINCDGVG 131 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G 131 (157)
.|+.|.|.|.+.... .++ -...+|+.|+|+.
T Consensus 1609 rC~~C~G~G~i~i~m-~fl~dv~~~C~~C~G~R 1640 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR-AFYALEKRPCPTCSGFR 1640 (1809)
T ss_pred CCCCCccCceEEEec-ccCCCcccCCCCCCCcC
Confidence 478888888876542 222 2334555555544
No 85
>PRK04023 DNA polymerase II large subunit; Validated
Probab=72.31 E-value=2.6 Score=41.88 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=32.4
Q ss_pred eeCCCCCCCCc-CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE-eCCCCCCee
Q 031581 88 QPCFPCSGSGA-QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQGTG 142 (157)
Q Consensus 88 ~~C~~C~GsG~-~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G~G 142 (157)
..|+.|.-.+. ..|+.|+..-.. ...|+.|.-.... .|++|+-.-
T Consensus 627 RfCpsCG~~t~~frCP~CG~~Te~----------i~fCP~CG~~~~~y~CPKCG~El 673 (1121)
T PRK04023 627 RKCPSCGKETFYRRCPFCGTHTEP----------VYRCPRCGIEVEEDECEKCGREP 673 (1121)
T ss_pred ccCCCCCCcCCcccCCCCCCCCCc----------ceeCccccCcCCCCcCCCCCCCC
Confidence 78999976654 899999887322 3579999555443 899997543
No 86
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=67.87 E-value=5.8 Score=40.31 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=32.4
Q ss_pred eeCCCCCCCCc-CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCc------eEeCCCCCCeeE
Q 031581 88 QPCFPCSGSGA-QRCRFCMGTGSVTVELGGDEREFSKCINCDGVG------SLTCTTCQGTGI 143 (157)
Q Consensus 88 ~~C~~C~GsG~-~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G------~~~C~~C~G~G~ 143 (157)
..|+.|..... ..|+.|...=.. ...|+.|+..- ...|+.|+-.-.
T Consensus 668 rkCPkCG~~t~~~fCP~CGs~te~----------vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 668 RRCPSCGTETYENRCPDCGTHTEP----------VYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EECCCCCCccccccCcccCCcCCC----------ceeCccCCCccCCCccccccCCCCCCccc
Confidence 89999986543 689999887432 24799997741 237999985443
No 87
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=66.16 E-value=5.4 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=12.5
Q ss_pred eCCCCCCeeEEEeeeecc
Q 031581 134 TCTTCQGTGIQPRYLDRR 151 (157)
Q Consensus 134 ~C~~C~G~G~~~~~l~~r 151 (157)
+|.-|+|+-+....|+=+
T Consensus 755 ~CevC~GkRYn~EtLev~ 772 (935)
T COG0178 755 PCEVCHGKRYNRETLEVK 772 (935)
T ss_pred eCCCcCCcccccceEEEE
Confidence 677777777777777644
No 88
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.93 E-value=7 Score=25.93 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=11.9
Q ss_pred eeCCCCCCCceE-eCCCCCC
Q 031581 122 SKCINCDGVGSL-TCTTCQG 140 (157)
Q Consensus 122 ~~C~~C~G~G~~-~C~~C~G 140 (157)
.+|..|.-.+.. .|++|+=
T Consensus 37 ~RC~~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 37 YRCEKCRKQSNPYTCPKCGF 56 (59)
T ss_pred eechhHHhcCCceECCCCCC
Confidence 356666666655 7777753
No 89
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=63.49 E-value=5.1 Score=39.19 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=24.8
Q ss_pred CcCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCce
Q 031581 99 QRCRFCMGTGSVTVELGGDE-REFSKCINCDGVGS 132 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G~ 132 (157)
-+|..|+|.|.+..+. .++ -...+|..|+|+.+
T Consensus 731 GRCe~C~GdG~ikIeM-~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 731 GRCEACQGDGVIKIEM-HFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred cCCccccCCceEEEEe-ccCCCceeeCCCcCCccc
Confidence 5799999999987753 333 34588999999865
No 90
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=63.21 E-value=2.4 Score=44.48 Aligned_cols=29 Identities=38% Similarity=0.796 Sum_probs=20.0
Q ss_pred eeeCCCCCCCceE------------eCCCCCCeeEEEeeee
Q 031581 121 FSKCINCDGVGSL------------TCTTCQGTGIQPRYLD 149 (157)
Q Consensus 121 ~~~C~~C~G~G~~------------~C~~C~G~G~~~~~l~ 149 (157)
.-+|+.|.|.|.+ +|..|+|+.+.+..|.
T Consensus 1607 ~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~ 1647 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQE 1647 (1809)
T ss_pred CCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHh
Confidence 4567777777765 6777777777665543
No 91
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=60.87 E-value=13 Score=23.72 Aligned_cols=14 Identities=36% Similarity=1.056 Sum_probs=9.9
Q ss_pred CcCCCCCcccEEEEE
Q 031581 99 QRCRFCMGTGSVTVE 113 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~ 113 (157)
..||+| |...+...
T Consensus 4 kPCPFC-G~~~~~~~ 17 (61)
T PF14354_consen 4 KPCPFC-GSADVLIR 17 (61)
T ss_pred cCCCCC-CCcceEee
Confidence 468899 77776654
No 92
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=58.57 E-value=4.4 Score=32.59 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=33.7
Q ss_pred ceeCCCCCCCCcCcCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCceE------eCCCCC
Q 031581 87 TQPCFPCSGSGAQRCRFCMGTGSVTVELGGDE-REFSKCINCDGVGSL------TCTTCQ 139 (157)
Q Consensus 87 ~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G~~------~C~~C~ 139 (157)
...|+.|.+.| ..|..|+....+. .+. .....|+.|..-=+. .|++|.
T Consensus 142 V~~C~lC~~kG-fiCe~C~~~~~If----PF~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 142 VYSCELCQQKG-FICEICNSDDIIF----PFQIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHhHHHHhCC-CCCccCCCCCCCC----CCCCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 36799999999 5899998885543 222 356789988765444 566663
No 93
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=56.75 E-value=10 Score=22.28 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=5.4
Q ss_pred cCCCCCcccEE
Q 031581 100 RCRFCMGTGSV 110 (157)
Q Consensus 100 ~C~~C~GsG~v 110 (157)
.||.|+..-.+
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 45555554444
No 94
>PRK05580 primosome assembly protein PriA; Validated
Probab=54.90 E-value=18 Score=34.18 Aligned_cols=53 Identities=17% Similarity=0.410 Sum_probs=36.6
Q ss_pred CCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE--eCCCCCCeeEE
Q 031581 85 ENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGTGIQ 144 (157)
Q Consensus 85 ~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G~~ 144 (157)
.....|..|+-. ..|+.|.+. .+... ....-.|..|+-+-.. .|+.|++.-+.
T Consensus 379 ~~~~~C~~Cg~~--~~C~~C~~~-l~~h~----~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~ 433 (679)
T PRK05580 379 APFLLCRDCGWV--AECPHCDAS-LTLHR----FQRRLRCHHCGYQEPIPKACPECGSTDLV 433 (679)
T ss_pred CCceEhhhCcCc--cCCCCCCCc-eeEEC----CCCeEECCCCcCCCCCCCCCCCCcCCeeE
Confidence 455899999765 689999983 33211 1235679999877655 89999887543
No 95
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=53.58 E-value=20 Score=20.70 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.9
Q ss_pred cCCCCCcccE
Q 031581 100 RCRFCMGTGS 109 (157)
Q Consensus 100 ~C~~C~GsG~ 109 (157)
.|+.|+-.=.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 4555555433
No 96
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=52.42 E-value=14 Score=21.60 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=12.9
Q ss_pred cCCCCCcccEEEEEcCCCeeeeeeCCCCC
Q 031581 100 RCRFCMGTGSVTVELGGDEREFSKCINCD 128 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~~~~~~C~~C~ 128 (157)
-|+.|.+. ....+..|.-.+...|+.|+
T Consensus 2 fC~~CG~~-l~~~ip~gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 2 FCPQCGGP-LERRIPEGDDRERLVCPACG 29 (34)
T ss_dssp B-TTT--B--EEE--TT-SS-EEEETTTT
T ss_pred ccccccCh-hhhhcCCCCCccceECCCCC
Confidence 47788777 22322235667778888884
No 97
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.27 E-value=24 Score=32.14 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE--eCCCCCCeeEE
Q 031581 85 ENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGTGIQ 144 (157)
Q Consensus 85 ~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G~~ 144 (157)
.....|..|.-. ..|+.|.+.=..... ...-.|..|+-.-.. .|+.|++.-+.
T Consensus 211 a~~~~C~~Cg~~--~~C~~C~~~l~~h~~-----~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~ 265 (505)
T TIGR00595 211 SKNLLCRSCGYI--LCCPNCDVSLTYHKK-----EGKLRCHYCGYQEPIPKTCPQCGSEDLV 265 (505)
T ss_pred CCeeEhhhCcCc--cCCCCCCCceEEecC-----CCeEEcCCCcCcCCCCCCCCCCCCCeeE
Confidence 456899999766 689999875333221 235679999776665 89999886544
No 98
>PRK05978 hypothetical protein; Provisional
Probab=51.55 E-value=7.1 Score=30.34 Aligned_cols=25 Identities=28% Similarity=0.719 Sum_probs=14.6
Q ss_pred cCCCCCcccEEEEEcCCCeeeeeeCCCCC
Q 031581 100 RCRFCMGTGSVTVELGGDEREFSKCINCD 128 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~~~~~~C~~C~ 128 (157)
+||.| |.|+... |.+.....|+.|+
T Consensus 35 rCP~C-G~G~LF~---g~Lkv~~~C~~CG 59 (148)
T PRK05978 35 RCPAC-GEGKLFR---AFLKPVDHCAACG 59 (148)
T ss_pred cCCCC-CCCcccc---cccccCCCccccC
Confidence 34444 4555542 5556677888884
No 99
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=44.87 E-value=7.2 Score=38.14 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=0.0
Q ss_pred eeCCCCCCCCc-CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE-eCCCCCCee
Q 031581 88 QPCFPCSGSGA-QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQGTG 142 (157)
Q Consensus 88 ~~C~~C~GsG~-~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G~G 142 (157)
..|+.|.-... ..|+.|...=... ..|+.|.-.-.. .|++|.-..
T Consensus 656 r~Cp~Cg~~t~~~~Cp~CG~~T~~~----------~~Cp~C~~~~~~~~C~~C~~~~ 702 (900)
T PF03833_consen 656 RRCPKCGKETFYNRCPECGSHTEPV----------YVCPDCGIEVEEDECPKCGRET 702 (900)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCcccCCcchhhcCcccCCccccc----------eeccccccccCccccccccccC
Confidence 78999976655 8899997765543 579999765444 888887654
No 100
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=43.65 E-value=20 Score=20.99 Aligned_cols=6 Identities=33% Similarity=1.298 Sum_probs=2.9
Q ss_pred eCCCCC
Q 031581 134 TCTTCQ 139 (157)
Q Consensus 134 ~C~~C~ 139 (157)
.|+.|+
T Consensus 27 ~C~~C~ 32 (36)
T PF13717_consen 27 RCSKCG 32 (36)
T ss_pred ECCCCC
Confidence 455443
No 101
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=42.37 E-value=9.3 Score=27.36 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=17.1
Q ss_pred CcCCCCCcccEEEEEc----CCCeeeeeeCCCCCCCce
Q 031581 99 QRCRFCMGTGSVTVEL----GGDEREFSKCINCDGVGS 132 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~~----~G~~~~~~~C~~C~G~G~ 132 (157)
..|..|+|.|.+.-.- ..++-....|.+|.|.|.
T Consensus 6 ~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGY 43 (95)
T ss_pred CCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCC
Confidence 4577777887654211 112223345555655554
No 102
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=42.35 E-value=18 Score=27.91 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=7.0
Q ss_pred eCCCCCCeeEEEe
Q 031581 134 TCTTCQGTGIQPR 146 (157)
Q Consensus 134 ~C~~C~G~G~~~~ 146 (157)
+|+.|++..+++.
T Consensus 132 ~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 132 PCPKCGHTEFTRQ 144 (146)
T ss_pred CCCCCCCCeeeeC
Confidence 5555555555443
No 103
>PF14353 CpXC: CpXC protein
Probab=41.85 E-value=32 Score=25.16 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=19.8
Q ss_pred CcCCCCCcccEEEEEc--CC------------CeeeeeeCCCCCCCceE
Q 031581 99 QRCRFCMGTGSVTVEL--GG------------DEREFSKCINCDGVGSL 133 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~~--~G------------~~~~~~~C~~C~G~G~~ 133 (157)
++||.|+....+..-. .. +-....+||.|+....+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 4688888887764321 11 11235677777666553
No 104
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=38.67 E-value=17 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=4.0
Q ss_pred cCCCCCcccEE
Q 031581 100 RCRFCMGTGSV 110 (157)
Q Consensus 100 ~C~~C~GsG~v 110 (157)
.||.|.|+..-
T Consensus 5 pCP~CGG~DrF 15 (40)
T PF08273_consen 5 PCPICGGKDRF 15 (40)
T ss_dssp --TTTT-TTTE
T ss_pred CCCCCcCcccc
Confidence 35555555443
No 105
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=38.01 E-value=32 Score=33.70 Aligned_cols=29 Identities=17% Similarity=-0.006 Sum_probs=26.0
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQ 77 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~ 77 (157)
-.-++...|.++|++++.|.++.+.+.+.
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~ 683 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRH 683 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEe
Confidence 34588999999999999999999999886
No 106
>PRK14299 chaperone protein DnaJ; Provisional
Probab=37.93 E-value=24 Score=29.77 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=23.3
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYE 75 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~ 75 (157)
.+.|+.+.+.|+|++++.|.++.+.+.
T Consensus 128 ~g~dl~~~l~isL~ea~~G~~~~i~l~ 154 (291)
T PRK14299 128 KGRDLEAELPLTLEEAYRGGEKVVEVA 154 (291)
T ss_pred CCCCEEEEEEecHHHHhCCCeEEEeeC
Confidence 357999999999999999999887554
No 107
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=37.70 E-value=30 Score=29.34 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.1
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQ 77 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~ 77 (157)
.+.|+.+.|.|+|++++.|..+.+.+.+.
T Consensus 116 kg~di~~~v~isLee~~~G~~k~i~~~~~ 144 (306)
T PRK10266 116 RGHDIEIEVAVFLEETLTEHKRTISYNLP 144 (306)
T ss_pred CCCceEEEEEEEHHHhcCCceEEEEEecc
Confidence 46799999999999999999988877654
No 108
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=36.67 E-value=50 Score=25.74 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=32.8
Q ss_pred cCCCCCcccEEEEEc-----CCCe-eeeeeCCCCCCCceE-eCCCC---CCeeEEE-----eeeecceeccC
Q 031581 100 RCRFCMGTGSVTVEL-----GGDE-REFSKCINCDGVGSL-TCTTC---QGTGIQP-----RYLDRREFKDD 156 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~-----~G~~-~~~~~C~~C~G~G~~-~C~~C---~G~G~~~-----~~l~~r~~~~~ 156 (157)
.|+.|+..|...... ++.+ .+...|+.|+=+-.. .-..- +|..+.- .=|+|++.|.|
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ev~~~~~~~p~G~r~~l~V~~~~DL~r~VvkS~ 73 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKVESPEDLNRDVVKSE 73 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCccceEEECcccCCCceEEEEEECChhhccceEEEcC
Confidence 588898888754332 3443 578899999766443 11111 2333322 34778777754
No 109
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=36.59 E-value=25 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.521 Sum_probs=26.5
Q ss_pred eeCCCCC---CCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE---eCCCCCCe
Q 031581 88 QPCFPCS---GSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCTTCQGT 141 (157)
Q Consensus 88 ~~C~~C~---GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~---~C~~C~G~ 141 (157)
..|+.|+ -.|+..|+.|+..-. ...|+.|+-.-.. -|..|+-.
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~-----------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT-----------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC-----------CCcCCCCCCCCCcccccccccCCc
Confidence 4688884 345578888844321 2468888665332 78888653
No 110
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=35.64 E-value=27 Score=20.21 Aligned_cols=11 Identities=45% Similarity=1.029 Sum_probs=6.3
Q ss_pred cCCCCCcccEE
Q 031581 100 RCRFCMGTGSV 110 (157)
Q Consensus 100 ~C~~C~GsG~v 110 (157)
.|..|++.|.+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45556666655
No 111
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=35.58 E-value=54 Score=19.38 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=3.7
Q ss_pred CCCCCc
Q 031581 101 CRFCMG 106 (157)
Q Consensus 101 C~~C~G 106 (157)
||.|+.
T Consensus 2 CP~C~~ 7 (41)
T PF13453_consen 2 CPRCGT 7 (41)
T ss_pred cCCCCc
Confidence 666655
No 112
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=9.4 Score=32.88 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=8.5
Q ss_pred eeeeCCCCCCCce
Q 031581 120 EFSKCINCDGVGS 132 (157)
Q Consensus 120 ~~~~C~~C~G~G~ 132 (157)
...+|.+|.-++.
T Consensus 224 VR~KC~nC~~t~~ 236 (308)
T COG3058 224 VRVKCSNCEQSKK 236 (308)
T ss_pred HHHHhccccccCC
Confidence 3466777776655
No 113
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=34.94 E-value=67 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=16.1
Q ss_pred CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCc
Q 031581 99 QRCRFCMGTGSVTVELGGDEREFSKCINCDGVG 131 (157)
Q Consensus 99 ~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G 131 (157)
..||+|...-..+...+|.+ ...|..|...+
T Consensus 7 KPCPFCG~~~~~v~~~~g~~--~v~C~~CgA~~ 37 (64)
T PRK09710 7 KPCPFCGCPSVTVKAISGYY--RAKCNGCESRT 37 (64)
T ss_pred cCCCCCCCceeEEEecCceE--EEEcCCCCcCc
Confidence 46777766655544333333 34566665543
No 114
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.82 E-value=34 Score=27.75 Aligned_cols=46 Identities=33% Similarity=0.684 Sum_probs=26.6
Q ss_pred CCCceeCCCCCCCCc--CcCC-----CCCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 84 RENTQPCFPCSGSGA--QRCR-----FCMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 84 ~~~~~~C~~C~GsG~--~~C~-----~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
......|+.|...|- .-|+ .|.=.|-.... =.....|..|+-.|++
T Consensus 57 ~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~~----C~~~~~C~~Cg~~GH~ 109 (190)
T COG5082 57 REENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSNH----CPKPKKCYNCGETGHL 109 (190)
T ss_pred cccccccchhcccCcccccCChhHhhhcCCCCccccc----CCcccccccccccCcc
Confidence 344589999976664 6677 77323332210 0012567777777776
No 115
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=34.79 E-value=25 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=18.1
Q ss_pred CeEEEEEEecceeeeeeEEeE
Q 031581 52 NTVVAISVGLVSVAVGIGIPI 72 (157)
Q Consensus 52 d~~~~l~vsl~~~~~G~~~~v 72 (157)
|+...+.|+|.+++.|.++.+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i 21 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISI 21 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEE
T ss_pred CeEEEEEeCHHHHhCCCEEEE
Confidence 678899999999999999877
No 116
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.07 E-value=47 Score=24.24 Aligned_cols=22 Identities=27% Similarity=0.652 Sum_probs=12.4
Q ss_pred eeCCCCCCCCc-----CcCCCCCcccE
Q 031581 88 QPCFPCSGSGA-----QRCRFCMGTGS 109 (157)
Q Consensus 88 ~~C~~C~GsG~-----~~C~~C~GsG~ 109 (157)
..|..|+.... ..||.|++...
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PRK12380 71 AWCWDCSQVVEIHQHDAQCPHCHGERL 97 (113)
T ss_pred EEcccCCCEEecCCcCccCcCCCCCCc
Confidence 67777764332 33666665543
No 117
>PRK14873 primosome assembly protein PriA; Provisional
Probab=32.86 E-value=71 Score=30.40 Aligned_cols=67 Identities=18% Similarity=0.451 Sum_probs=42.3
Q ss_pred eeeEEeEeeeeeecccccCCCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE-eCCCCCCeeEE
Q 031581 66 VGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL-TCTTCQGTGIQ 144 (157)
Q Consensus 66 ~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~-~C~~C~G~G~~ 144 (157)
.| .+-+.+.+. .-.....|..|.-. ..|+.|.+.=..... ...-.|..|+-.-.- .|+.|++.-+.
T Consensus 368 ~g-qvll~lnRr-----Gyap~l~C~~Cg~~--~~C~~C~~~L~~h~~-----~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 368 HG-PVLVQVPRR-----GYVPSLACARCRTP--ARCRHCTGPLGLPSA-----GGTPRCRWCGRAAPDWRCPRCGSDRLR 434 (665)
T ss_pred cC-cEEEEecCC-----CCCCeeEhhhCcCe--eECCCCCCceeEecC-----CCeeECCCCcCCCcCccCCCCcCCcce
Confidence 45 444445443 22456899999655 789999876444321 124679999764322 89999887554
Q ss_pred E
Q 031581 145 P 145 (157)
Q Consensus 145 ~ 145 (157)
.
T Consensus 435 ~ 435 (665)
T PRK14873 435 A 435 (665)
T ss_pred e
Confidence 3
No 118
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.67 E-value=27 Score=31.79 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=25.8
Q ss_pred CCceeCCCCCC-------CCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCce
Q 031581 85 ENTQPCFPCSG-------SGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGS 132 (157)
Q Consensus 85 ~~~~~C~~C~G-------sG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~ 132 (157)
.....|+.|++ .+...|+.|+-+-.+ ...||.|++...
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~----------~~~Cp~C~s~~l 264 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI----------PKTCPQCGSEDL 264 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCC----------CCCCCCCCCCee
Confidence 55688999983 334778888755443 367999977643
No 119
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=32.24 E-value=35 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=9.4
Q ss_pred eeeCCCCCCCceE-----eCCCCCCee
Q 031581 121 FSKCINCDGVGSL-----TCTTCQGTG 142 (157)
Q Consensus 121 ~~~C~~C~G~G~~-----~C~~C~G~G 142 (157)
..+|..|+-.... .|+.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCC
Confidence 3445555444333 455555554
No 120
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.82 E-value=48 Score=28.69 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=5.5
Q ss_pred eCCCCCCee
Q 031581 134 TCTTCQGTG 142 (157)
Q Consensus 134 ~C~~C~G~G 142 (157)
.|.+|++.=
T Consensus 254 ~C~~C~~Yl 262 (309)
T PRK03564 254 SCGDCGTYL 262 (309)
T ss_pred ecccccccc
Confidence 666666643
No 121
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=31.51 E-value=37 Score=18.46 Aligned_cols=6 Identities=50% Similarity=1.154 Sum_probs=3.4
Q ss_pred eeCCCC
Q 031581 122 SKCINC 127 (157)
Q Consensus 122 ~~C~~C 127 (157)
-+||+|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 456655
No 122
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=31.12 E-value=60 Score=19.34 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=5.7
Q ss_pred cCCCCCccc
Q 031581 100 RCRFCMGTG 108 (157)
Q Consensus 100 ~C~~C~GsG 108 (157)
.|+.|..+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 466776655
No 123
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.97 E-value=28 Score=32.88 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCceeCCCCCCC-------CcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCc
Q 031581 85 ENTQPCFPCSGS-------GAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVG 131 (157)
Q Consensus 85 ~~~~~C~~C~Gs-------G~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G 131 (157)
.....|+.|++. +...|+.|+-+-.+ ...|+.|++.-
T Consensus 388 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~----------~~~Cp~Cg~~~ 431 (679)
T PRK05580 388 GWVAECPHCDASLTLHRFQRRLRCHHCGYQEPI----------PKACPECGSTD 431 (679)
T ss_pred cCccCCCCCCCceeEECCCCeEECCCCcCCCCC----------CCCCCCCcCCe
Confidence 455789999864 33678888765443 35799997763
No 124
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=30.30 E-value=42 Score=29.46 Aligned_cols=28 Identities=43% Similarity=0.929 Sum_probs=21.0
Q ss_pred eeCCCCCCCCcCcCCCCCcccEEEEEcCCCe
Q 031581 88 QPCFPCSGSGAQRCRFCMGTGSVTVELGGDE 118 (157)
Q Consensus 88 ~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~ 118 (157)
+.|..|+|.| |+.|.++|.+.+---|++
T Consensus 261 v~~~~~~g~g---c~~ck~~~WiEilG~Gmv 288 (339)
T PRK00488 261 VSCFKCGGKG---CRVCKGTGWLEILGCGMV 288 (339)
T ss_pred EEEeccCCCc---ccccCCCCceEEeccCcc
Confidence 7799999887 899999997665322554
No 125
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=29.38 E-value=57 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=18.5
Q ss_pred cCCCCCcccEEEEEc-----CCCe-eeeeeCCCCCCCce
Q 031581 100 RCRFCMGTGSVTVEL-----GGDE-REFSKCINCDGVGS 132 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~-----~G~~-~~~~~C~~C~G~G~ 132 (157)
.|+.|+..|...... ++.+ .+...|++|+=+-.
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~~ 41 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKNN 41 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EEE
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEee
Confidence 588888888764321 3443 56788999965533
No 126
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=28.15 E-value=29 Score=17.31 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=4.1
Q ss_pred CCCCCCCce
Q 031581 124 CINCDGVGS 132 (157)
Q Consensus 124 C~~C~G~G~ 132 (157)
|.+|+..|+
T Consensus 3 C~~C~~~GH 11 (18)
T PF00098_consen 3 CFNCGEPGH 11 (18)
T ss_dssp CTTTSCSSS
T ss_pred CcCCCCcCc
Confidence 444444444
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=26.84 E-value=41 Score=32.50 Aligned_cols=67 Identities=15% Similarity=0.353 Sum_probs=44.9
Q ss_pred eeeeEEeEeeeeeecccccCCCceeCCCCCCCCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE--eCCCCCCee
Q 031581 65 AVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTTCQGTG 142 (157)
Q Consensus 65 ~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~--~C~~C~G~G 142 (157)
..|...-+++.+. .-.....|..|.-. ..|+.|...=...+ ....-.|..|+-...+ .|+.|++.-
T Consensus 418 ~~geQ~llflnRR-----Gys~~l~C~~Cg~v--~~Cp~Cd~~lt~H~-----~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~ 485 (730)
T COG1198 418 ERGEQVLLFLNRR-----GYAPLLLCRDCGYI--AECPNCDSPLTLHK-----ATGQLRCHYCGYQEPIPQSCPECGSEH 485 (730)
T ss_pred hcCCeEEEEEccC-----CccceeecccCCCc--ccCCCCCcceEEec-----CCCeeEeCCCCCCCCCCCCCCCCCCCe
Confidence 3555666666665 22344899999655 68999987733222 2346789999777555 999999883
Q ss_pred E
Q 031581 143 I 143 (157)
Q Consensus 143 ~ 143 (157)
.
T Consensus 486 L 486 (730)
T COG1198 486 L 486 (730)
T ss_pred e
Confidence 3
No 128
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=26.55 E-value=85 Score=18.70 Aligned_cols=11 Identities=45% Similarity=1.017 Sum_probs=5.5
Q ss_pred eeCCCCCCCCc
Q 031581 88 QPCFPCSGSGA 98 (157)
Q Consensus 88 ~~C~~C~GsG~ 98 (157)
.+||.|.|+..
T Consensus 4 ~pCP~CGG~Dr 14 (37)
T smart00778 4 GPCPNCGGSDR 14 (37)
T ss_pred cCCCCCCCccc
Confidence 45555555444
No 129
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.55 E-value=81 Score=23.01 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=12.8
Q ss_pred eeCCCCCCCCc-----CcCCCCCcccE
Q 031581 88 QPCFPCSGSGA-----QRCRFCMGTGS 109 (157)
Q Consensus 88 ~~C~~C~GsG~-----~~C~~C~GsG~ 109 (157)
..|..|+-.-. ..||.|++...
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIML 97 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCCc
Confidence 67777753322 44677666553
No 130
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.90 E-value=82 Score=18.57 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=6.3
Q ss_pred CcCCCCCcccEE
Q 031581 99 QRCRFCMGTGSV 110 (157)
Q Consensus 99 ~~C~~C~GsG~v 110 (157)
+.||.|+.+-.+
T Consensus 6 v~CP~C~s~~~v 17 (36)
T PF03811_consen 6 VHCPRCQSTEGV 17 (36)
T ss_pred eeCCCCCCCCcc
Confidence 345666655533
No 131
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.02 E-value=1e+02 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=14.5
Q ss_pred ceeCCCCCCCCc------CcCCCCCcccEEE
Q 031581 87 TQPCFPCSGSGA------QRCRFCMGTGSVT 111 (157)
Q Consensus 87 ~~~C~~C~GsG~------~~C~~C~GsG~v~ 111 (157)
...|..|+-... ..||.|++....+
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~i 101 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKNVII 101 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCceEE
Confidence 377888863322 3477777665433
No 132
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=24.85 E-value=1.2e+02 Score=18.56 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCC
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSG 97 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG 97 (157)
+.+.+.-.+.+.+.+.. -....+.|++. ...|..|.--|
T Consensus 3 ~~kPL~~~i~v~~~~g~-~~~~~v~YE~l---------p~~C~~C~~~g 41 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGE-SFWVKVKYERL---------PRFCFHCGRIG 41 (49)
T ss_pred CCCcccceEEEEeCCCc-EEEEEEEECCc---------ChhhcCCCCcC
Confidence 34444555555555332 25566666654 36788887444
No 133
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=24.40 E-value=99 Score=24.22 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCCCCcccEEEEE-c-----CCCe-eeeeeCCCCCCCce
Q 031581 101 CRFCMGTGSVTVE-L-----GGDE-REFSKCINCDGVGS 132 (157)
Q Consensus 101 C~~C~GsG~v~~~-~-----~G~~-~~~~~C~~C~G~G~ 132 (157)
||.|++.+..... . ++.+ .+...|+.|+=+-.
T Consensus 1 CP~Cg~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ 39 (163)
T TIGR00340 1 CPVCGSRTLKAVTYDYDIPYFGKIMLSTYICEKCGYRST 39 (163)
T ss_pred CCCCCCcceEeeeEeccCCCcceEEEEEEECCCCCCchh
Confidence 7888887655421 1 3443 57889999966543
No 134
>PRK11032 hypothetical protein; Provisional
Probab=23.92 E-value=56 Score=25.66 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=6.5
Q ss_pred eCCCCCCeeEEE
Q 031581 134 TCTTCQGTGIQP 145 (157)
Q Consensus 134 ~C~~C~G~G~~~ 145 (157)
+|+.|++..+.+
T Consensus 144 pCp~C~~~~F~R 155 (160)
T PRK11032 144 LCPKCGHDQFQR 155 (160)
T ss_pred CCCCCCCCeeee
Confidence 555555555443
No 135
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=23.80 E-value=1.4e+02 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.646 Sum_probs=25.3
Q ss_pred CceeCCCCCC-------CCcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCC
Q 031581 86 NTQPCFPCSG-------SGAQRCRFCMGTGSVTVELGGDEREFSKCINCDGV 130 (157)
Q Consensus 86 ~~~~C~~C~G-------sG~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~ 130 (157)
....|+.|+. ++...|+.|+=...+ ...||+|.+.
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~----------p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPI----------PQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCC----------CCCCCCCCCC
Confidence 3377999974 455888888877443 3679999887
No 136
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=23.48 E-value=1.3e+02 Score=21.81 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=6.1
Q ss_pred eeeEEeEeeeee
Q 031581 66 VGIGIPIFYETQ 77 (157)
Q Consensus 66 ~G~~~~v~~~~~ 77 (157)
.|..+.+.+...
T Consensus 15 ~G~~vrff~i~~ 26 (102)
T PF10080_consen 15 DGKEVRFFAIKK 26 (102)
T ss_pred CCEEEEEEEEEC
Confidence 455555555443
No 137
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=23.00 E-value=1.7e+02 Score=17.37 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=16.3
Q ss_pred cCCCCCcccEEEEEc---C--CCeeeeeeCCCCC
Q 031581 100 RCRFCMGTGSVTVEL---G--GDEREFSKCINCD 128 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~---~--G~~~~~~~C~~C~ 128 (157)
.|+.|+....+.... . ..+..--.|.+|.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 588887777765432 1 1233445666664
No 138
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.95 E-value=51 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=11.6
Q ss_pred eeCCCCCCCCc------CcCCCCCc
Q 031581 88 QPCFPCSGSGA------QRCRFCMG 106 (157)
Q Consensus 88 ~~C~~C~GsG~------~~C~~C~G 106 (157)
++|+.|.-.-+ ++||.|+-
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~ 34 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGT 34 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCC
Confidence 67777765544 55666643
No 139
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=22.89 E-value=85 Score=18.91 Aligned_cols=6 Identities=33% Similarity=1.110 Sum_probs=2.9
Q ss_pred eCCCCC
Q 031581 134 TCTTCQ 139 (157)
Q Consensus 134 ~C~~C~ 139 (157)
.|+.|+
T Consensus 23 ~Cp~CG 28 (46)
T PRK00398 23 RCPYCG 28 (46)
T ss_pred ECCCCC
Confidence 455554
No 140
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=22.23 E-value=1.4e+02 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=21.9
Q ss_pred cCCCCCcccEEEEE--c----CCCe-eeeeeCCCCCCCce
Q 031581 100 RCRFCMGTGSVTVE--L----GGDE-REFSKCINCDGVGS 132 (157)
Q Consensus 100 ~C~~C~GsG~v~~~--~----~G~~-~~~~~C~~C~G~G~ 132 (157)
.|+.|++.|..... . ++.+ .+...|+.|+=+-.
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ 41 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSN 41 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccc
Confidence 58888888775432 1 3443 56789999976644
No 141
>PF15616 TerY-C: TerY-C metal binding domain
Probab=21.27 E-value=1.7e+02 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=11.8
Q ss_pred CCCceEeCCCCCCeeEEE
Q 031581 128 DGVGSLTCTTCQGTGIQP 145 (157)
Q Consensus 128 ~G~G~~~C~~C~G~G~~~ 145 (157)
+|.+...|++|.-.|...
T Consensus 101 ~g~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 101 DGEGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCEECCCCCCeeeec
Confidence 455566788887777543
No 142
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=21.25 E-value=1.5e+02 Score=17.40 Aligned_cols=29 Identities=24% Similarity=0.548 Sum_probs=15.3
Q ss_pred cCCCCCcccEEEEEc---CC--CeeeeeeCCCCC
Q 031581 100 RCRFCMGTGSVTVEL---GG--DEREFSKCINCD 128 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~---~G--~~~~~~~C~~C~ 128 (157)
.|+.|+....+.... .+ .+..--.|.+|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCC
Confidence 588888887776532 12 234455677774
No 143
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.86 E-value=93 Score=22.51 Aligned_cols=12 Identities=25% Similarity=0.681 Sum_probs=6.9
Q ss_pred CCceEeCCCCCC
Q 031581 129 GVGSLTCTTCQG 140 (157)
Q Consensus 129 G~G~~~C~~C~G 140 (157)
|.+++.|..|+-
T Consensus 39 ~~~h~~C~~CG~ 50 (99)
T PRK14892 39 NIAIITCGNCGL 50 (99)
T ss_pred CcceEECCCCCC
Confidence 455556666653
No 144
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.40 E-value=1.1e+02 Score=18.31 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.4
Q ss_pred eeeCCCCCC
Q 031581 121 FSKCINCDG 129 (157)
Q Consensus 121 ~~~C~~C~G 129 (157)
...||.|++
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 344555544
No 145
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.15 E-value=1.2e+02 Score=25.32 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=6.5
Q ss_pred CCCcCcCCCCC
Q 031581 95 GSGAQRCRFCM 105 (157)
Q Consensus 95 GsG~~~C~~C~ 105 (157)
|.....|+.|+
T Consensus 241 ~R~g~pCprCG 251 (272)
T PRK14810 241 QRTGEPCLNCK 251 (272)
T ss_pred CCCCCcCCCCC
Confidence 33346777775
No 146
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=20.01 E-value=56 Score=29.27 Aligned_cols=13 Identities=46% Similarity=0.923 Sum_probs=9.9
Q ss_pred CcCCCCCcccEEE
Q 031581 99 QRCRFCMGTGSVT 111 (157)
Q Consensus 99 ~~C~~C~GsG~v~ 111 (157)
..|+.|+|+|.+.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 5678888888875
Done!