Query 031581
Match_columns 157
No_of_seqs 123 out of 1412
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.7 1.1E-18 3.7E-23 125.5 3.1 84 51-145 2-94 (104)
2 1nlt_A Protein YDJ1, mitochond 99.6 1.3E-15 4.6E-20 124.5 9.3 87 49-145 10-109 (248)
3 1exk_A DNAJ protein; extended 99.4 4.6E-14 1.6E-18 96.0 3.8 69 67-146 1-78 (79)
4 2ctt_A DNAJ homolog subfamily 98.5 2.2E-08 7.4E-13 71.4 1.1 76 49-133 4-93 (104)
5 1nlt_A Protein YDJ1, mitochond 98.2 2.8E-07 9.5E-12 75.0 1.5 83 43-133 8-108 (248)
6 1exk_A DNAJ protein; extended 98.1 1.2E-06 4.1E-11 58.9 3.1 41 84-133 25-76 (79)
7 3lcz_A YCZA, inhibitor of trap 97.5 5.6E-05 1.9E-09 48.1 2.8 26 120-145 8-36 (53)
8 3lcz_A YCZA, inhibitor of trap 97.0 0.00026 9.1E-09 44.9 1.8 25 88-112 10-37 (53)
9 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00038 1.3E-08 44.2 2.4 25 88-112 10-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.8 0.00097 3.3E-08 42.3 3.4 25 121-145 9-36 (53)
11 3pmq_A Decaheme cytochrome C M 96.4 6.2E-05 2.1E-09 69.2 -6.1 78 54-141 168-280 (669)
12 3agx_A DNAJ homolog subfamily 96.2 0.0016 5.5E-08 50.3 1.6 27 50-76 2-28 (181)
13 2q2g_A HSP40 protein, heat sho 90.9 0.11 3.8E-06 39.7 2.4 28 50-77 3-30 (180)
14 1c3g_A Heat shock protein 40; 83.6 0.45 1.5E-05 35.9 1.8 27 51-77 1-27 (170)
15 3lz8_A Putative chaperone DNAJ 66.0 3.7 0.00013 34.2 2.9 30 48-77 138-167 (329)
16 1pft_A TFIIB, PFTFIIBN; N-term 38.3 13 0.00044 22.0 1.3 10 130-139 22-31 (50)
17 3pmq_A Decaheme cytochrome C M 36.8 13 0.00043 34.2 1.6 46 51-96 169-220 (669)
18 3i38_A Putative chaperone DNAJ 35.9 13 0.00045 25.8 1.3 24 50-73 11-34 (109)
19 1dl6_A Transcription factor II 35.3 17 0.00058 22.6 1.6 8 131-138 29-36 (58)
20 3nyb_B Protein AIR2; polya RNA 32.1 26 0.00089 23.4 2.2 49 88-137 6-64 (83)
21 1xao_A YDJ1, mitochondrial pro 30.0 23 0.00078 24.9 1.7 23 50-72 6-28 (121)
22 4bbr_M Transcription initiatio 28.3 25 0.00085 29.2 1.9 26 130-156 40-69 (345)
23 2r6f_A Excinuclease ABC subuni 27.8 45 0.0015 31.9 3.7 31 100-131 755-786 (972)
24 1ltl_A DNA replication initiat 27.2 47 0.0016 26.4 3.4 16 116-131 151-166 (279)
25 2vf7_A UVRA2, excinuclease ABC 26.3 45 0.0015 31.2 3.4 31 100-131 640-671 (842)
26 2jrp_A Putative cytoplasmic pr 21.6 1E+02 0.0036 20.5 3.7 33 88-130 3-40 (81)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=125.52 Aligned_cols=84 Identities=27% Similarity=0.617 Sum_probs=76.7
Q ss_pred CCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeeeeC
Q 031581 51 QNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFSKC 124 (157)
Q Consensus 51 ~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~~C 124 (157)
.|+.+.|.|+|+|+|+|.+++|.+++. ..|+.|+|+|+ .+|+.|+|+|++...+ |+|+.+.+|
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~----------~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-G~~~~~~~C 70 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIM----------DTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-GPFVMRSTC 70 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCC----------EECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-TTEEEEEEC
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeee----------eECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-CCEEEEEEC
Confidence 366788899999999999999999998 99999999996 6899999999987665 788889999
Q ss_pred CCCCCCceE---eCCCCCCeeEEE
Q 031581 125 INCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 125 ~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
+.|.|+|++ +|+.|+|.|++.
T Consensus 71 ~~C~G~G~~i~~~C~~C~G~G~v~ 94 (104)
T 2ctt_A 71 RRCGGRGSIIISPCVVCRGAGQAK 94 (104)
T ss_dssp SSSSSSSEECSSCCSSSSSCSEEC
T ss_pred CcCCCcceECCCcCCCCCCeeEEE
Confidence 999999998 899999999875
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.61 E-value=1.3e-15 Score=124.50 Aligned_cols=87 Identities=26% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc-----CcCCCCCcccEEEEEc-CCCe--ee
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA-----QRCRFCMGTGSVTVEL-GGDE--RE 120 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~-----~~C~~C~GsG~v~~~~-~G~~--~~ 120 (157)
.++|+++.|.|+|+|+|.|.++.+.+.+. ..|+.|+|+|+ .+|+.|+|+|.+...+ .|.| +.
T Consensus 10 ~g~d~~~~l~vslee~~~G~~k~i~~~r~----------~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~ 79 (248)
T 1nlt_A 10 RGKDIKHEISASLEELYKGRTAKLALNKQ----------ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRF 79 (248)
T ss_dssp BCCCEEEEEEECTTHHHHCEEEEEEEEEE----------EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEE
T ss_pred CCCCEEEEEEecHHHhcCCceEEEEeeEE----------EeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEE
Confidence 46799999999999999999999999998 99999999996 8999999999987544 3543 57
Q ss_pred eeeCCCCCCCceE-----eCCCCCCeeEEE
Q 031581 121 FSKCINCDGVGSL-----TCTTCQGTGIQP 145 (157)
Q Consensus 121 ~~~C~~C~G~G~~-----~C~~C~G~G~~~ 145 (157)
+.+|+.|+|+|++ +|++|+|.|++.
T Consensus 80 ~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~ 109 (248)
T 1nlt_A 80 QTECDVCHGTGDIIDPKDRCKSCNGKKVEN 109 (248)
T ss_dssp ECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred EEcCCCCCCcCEEeccCCCCcccCCCceEe
Confidence 8999999999965 899999999875
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.44 E-value=4.6e-14 Score=96.04 Aligned_cols=69 Identities=38% Similarity=0.737 Sum_probs=59.4
Q ss_pred eeEEeEeeeeeecccccCCCceeCCCCCCCCc------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE---eCCC
Q 031581 67 GIGIPIFYETQIDNAAKRENTQPCFPCSGSGA------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL---TCTT 137 (157)
Q Consensus 67 G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~---~C~~ 137 (157)
|.+++|.|++. ..|+.|+|+|+ .+|+.|+|+|+++..+ |+|+.+.+|+.|+|.|.+ +|+.
T Consensus 1 G~~~~i~~~~~----------~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~~ 69 (79)
T 1exk_A 1 GVTKEIRIPTL----------EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-GFFAVQQTCPHCQGRGTLIKDPCNK 69 (79)
T ss_dssp CTTTSCCCCCE----------EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE-TTEEEEEECTTTTTSSEECSSBCGG
T ss_pred CcEEEEEcccc----------eECCCCcccccCCCccCCCCCCCcCeEEEEEEc-CCCEEeeECcCCCCccEECCCcCCC
Confidence 34456667776 99999999996 5899999999987655 888888999999999999 9999
Q ss_pred CCCeeEEEe
Q 031581 138 CQGTGIQPR 146 (157)
Q Consensus 138 C~G~G~~~~ 146 (157)
|+|.|++..
T Consensus 70 C~G~G~~~~ 78 (79)
T 1exk_A 70 CHGHGRVER 78 (79)
T ss_dssp GTTSSEEEC
T ss_pred CCCeEEEee
Confidence 999998753
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.2e-08 Score=71.40 Aligned_cols=76 Identities=25% Similarity=0.495 Sum_probs=58.5
Q ss_pred CCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc-----------CcCCCCCcccEEEEEc
Q 031581 49 LDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA-----------QRCRFCMGTGSVTVEL 114 (157)
Q Consensus 49 l~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~-----------~~C~~C~GsG~v~~~~ 114 (157)
...++.+.|+..+.+..+.+..+....+.. +|+.++.....|+.|+|+|. ++|+.|+|+|+++
T Consensus 4 ~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--- 80 (104)
T 2ctt_A 4 GSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII--- 80 (104)
T ss_dssp CCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC---
T ss_pred eEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC---
Confidence 344555666777777777777666666654 56666666789999999995 5899999999987
Q ss_pred CCCeeeeeeCCCCCCCceE
Q 031581 115 GGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 115 ~G~~~~~~~C~~C~G~G~~ 133 (157)
..+|+.|+|.|.+
T Consensus 81 ------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 81 ------ISPCVVCRGAGQA 93 (104)
T ss_dssp ------SSCCSSSSSCSEE
T ss_pred ------CCcCCCCCCeeEE
Confidence 4789999999986
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.22 E-value=2.8e-07 Score=75.04 Aligned_cols=83 Identities=17% Similarity=0.389 Sum_probs=69.5
Q ss_pred ccccccCCCCeEEEEEEecceeeeeeEEeEeeeeee---cccccCCCceeCCCCCCCCc---------------CcCCCC
Q 031581 43 PCIRAELDQNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRENTQPCFPCSGSGA---------------QRCRFC 104 (157)
Q Consensus 43 p~~~adl~~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~~~~~C~~C~GsG~---------------~~C~~C 104 (157)
|++..|+..++.+.|+..+.+..+-+.......+.. +|+.++. ...|+.|+|+|. .+|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 456678999999999999999999999888887654 6766666 499999999994 589999
Q ss_pred CcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 105 MGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 105 ~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
+|+|+++.. ..+|+.|+|.|.+
T Consensus 87 ~G~G~~i~~-------~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 87 HGTGDIIDP-------KDRCKSCNGKKVE 108 (248)
T ss_dssp SSSSSCCCT-------TSBCSSSTTSCEE
T ss_pred CCcCEEecc-------CCCCcccCCCceE
Confidence 999998632 4789999999975
No 6
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.14 E-value=1.2e-06 Score=58.93 Aligned_cols=41 Identities=37% Similarity=0.868 Sum_probs=33.1
Q ss_pred CCCceeCCCCCCCCc-----------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE
Q 031581 84 RENTQPCFPCSGSGA-----------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL 133 (157)
Q Consensus 84 ~~~~~~C~~C~GsG~-----------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~ 133 (157)
.....+|+.|+|+|. .+|+.|+|+|.++ ..+|+.|+|.|.+
T Consensus 25 ~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~---------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 25 GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI---------KDPCNKCHGHGRV 76 (79)
T ss_dssp SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC---------SSBCGGGTTSSEE
T ss_pred CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC---------CCcCCCCCCeEEE
Confidence 344478999999996 2799999999875 4689999999876
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.50 E-value=5.6e-05 Score=48.10 Aligned_cols=26 Identities=35% Similarity=0.825 Sum_probs=21.2
Q ss_pred eeeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 120 EFSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 120 ~~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
.+.+|+.|+|+|.+ +|+.|+|.|++.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVIL 36 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEE
Confidence 46788888888886 888888888865
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.99 E-value=0.00026 Score=44.94 Aligned_cols=25 Identities=36% Similarity=0.941 Sum_probs=17.7
Q ss_pred eeCCCCCCCCc---CcCCCCCcccEEEE
Q 031581 88 QPCFPCSGSGA---QRCRFCMGTGSVTV 112 (157)
Q Consensus 88 ~~C~~C~GsG~---~~C~~C~GsG~v~~ 112 (157)
.+|+.|+|+|. ..|+.|+|+|.+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 67777777776 56777777776654
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.96 E-value=0.00038 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=17.4
Q ss_pred eeCCCCCCCCc---CcCCCCCcccEEEE
Q 031581 88 QPCFPCSGSGA---QRCRFCMGTGSVTV 112 (157)
Q Consensus 88 ~~C~~C~GsG~---~~C~~C~GsG~v~~ 112 (157)
..|+.|+|+|. .+|+.|+|+|.++.
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred ccCCCCcceeccCCCCCccCCCCccEEE
Confidence 57777777776 56777777776654
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.83 E-value=0.00097 Score=42.29 Aligned_cols=25 Identities=28% Similarity=0.846 Sum_probs=16.1
Q ss_pred eeeCCCCCCCceE---eCCCCCCeeEEE
Q 031581 121 FSKCINCDGVGSL---TCTTCQGTGIQP 145 (157)
Q Consensus 121 ~~~C~~C~G~G~~---~C~~C~G~G~~~ 145 (157)
..+|+.|+|.|.+ +|+.|+|.|.+.
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred cccCCCCcceeccCCCCCccCCCCccEE
Confidence 3456666666665 677777777654
No 11
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=96.40 E-value=6.2e-05 Score=69.20 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=57.1
Q ss_pred EEEEEEecceeeeeeEEeEeeeeeecccccCCCceeCCCCCCCCc---------CcCCCCCcccEEEE-----------E
Q 031581 54 VVAISVGLVSVAVGIGIPIFYETQIDNAAKRENTQPCFPCSGSGA---------QRCRFCMGTGSVTV-----------E 113 (157)
Q Consensus 54 ~~~l~vsl~~~~~G~~~~v~~~~~~~~~~~~~~~~~C~~C~GsG~---------~~C~~C~GsG~v~~-----------~ 113 (157)
.+.++++|++++.|.++++.+.+. ..|..|+|+|+ .+|+.|+|+..... +
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~----------~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~i 237 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSI----------DTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSK 237 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCS----------HHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHH
T ss_pred eEEEEEEhHHhhCCCceEEEeccC----------CcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeee
Confidence 356788999999999999999888 89999988875 68999999842211 1
Q ss_pred cCCCe-eeeeeCCCCCCCce--------------EeCCCCCCe
Q 031581 114 LGGDE-REFSKCINCDGVGS--------------LTCTTCQGT 141 (157)
Q Consensus 114 ~~G~~-~~~~~C~~C~G~G~--------------~~C~~C~G~ 141 (157)
+.|+| +....|..|+..+. ..|..|+..
T Consensus 238 H~G~fP~~~~~C~~CH~~~~~la~~~~w~~~ps~~aC~sCH~~ 280 (669)
T 3pmq_A 238 HLTGFPQSISNCQTCHADNPDLADRQNWYRVPTMEACGACHTQ 280 (669)
T ss_dssp TTSSCSSCTTCCTTTSCCCTTCCSCSCTTTCCCHHHHHHHCCS
T ss_pred eccCCCCccCcchhhcCCccccccccccccCCchhhhhhccCC
Confidence 22444 45567888888764 168888753
No 12
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=96.17 E-value=0.0016 Score=50.32 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCCeEEEEEEecceeeeeeEEeEeeee
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPIFYET 76 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v~~~~ 76 (157)
++|+++.|.++|+|+|.|.++.+.+.+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~ 28 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH 28 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec
Confidence 468889999999999999999998764
No 13
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=90.91 E-value=0.11 Score=39.72 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=25.7
Q ss_pred CCCeEEEEEEecceeeeeeEEeEeeeee
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPIFYETQ 77 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v~~~~~ 77 (157)
++|+++.|.++|+|+|.|.++.+.+.+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~ 30 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRK 30 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEE
Confidence 4689999999999999999999999987
No 14
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=83.58 E-value=0.45 Score=35.93 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCeEEEEEEecceeeeeeEEeEeeeee
Q 031581 51 QNTVVAISVGLVSVAVGIGIPIFYETQ 77 (157)
Q Consensus 51 ~d~~~~l~vsl~~~~~G~~~~v~~~~~ 77 (157)
+|+++.|.++|+++|.|.++.+.+.+.
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~ 27 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRK 27 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEe
Confidence 478999999999999999999988763
No 15
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=66.01 E-value=3.7 Score=34.21 Aligned_cols=30 Identities=13% Similarity=0.081 Sum_probs=27.2
Q ss_pred cCCCCeEEEEEEecceeeeeeEEeEeeeee
Q 031581 48 ELDQNTVVAISVGLVSVAVGIGIPIFYETQ 77 (157)
Q Consensus 48 dl~~d~~~~l~vsl~~~~~G~~~~v~~~~~ 77 (157)
..++|+.+.|.|+|++++.|.++.+.+.+.
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~ 167 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLP 167 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEE
Confidence 356899999999999999999999999886
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=38.35 E-value=13 Score=22.02 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=5.3
Q ss_pred CceEeCCCCC
Q 031581 130 VGSLTCTTCQ 139 (157)
Q Consensus 130 ~G~~~C~~C~ 139 (157)
+|.+.|..|+
T Consensus 22 ~gelvC~~CG 31 (50)
T 1pft_A 22 RGEIVCAKCG 31 (50)
T ss_dssp TTEEEESSSC
T ss_pred CCeEECcccC
Confidence 3445666663
No 17
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=36.76 E-value=13 Score=34.19 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=22.2
Q ss_pred CCeEEEEEEecceeeeeeEEeEeeeeee---cccccCC---CceeCCCCCCC
Q 031581 51 QNTVVAISVGLVSVAVGIGIPIFYETQI---DNAAKRE---NTQPCFPCSGS 96 (157)
Q Consensus 51 ~d~~~~l~vsl~~~~~G~~~~v~~~~~~---~~~~~~~---~~~~C~~C~Gs 96 (157)
.++.+.++....+..+.+.+.....+.. +|++++. ....|+.|+|+
T Consensus 169 ~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 169 TNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNS 220 (669)
T ss_dssp CCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSST
T ss_pred EEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCC
Confidence 3455555555555555555544444433 3443332 34455555555
No 18
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=35.90 E-value=13 Score=25.78 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.0
Q ss_pred CCCeEEEEEEecceeeeeeEEeEe
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPIF 73 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v~ 73 (157)
+.|+.+.+.|+|.+++.|.++.+.
T Consensus 11 G~DL~~~~~Isl~eAl~G~~i~v~ 34 (109)
T 3i38_A 11 GHNLEIVLPLAPWEAALGAKVTVP 34 (109)
T ss_dssp TTEEEEEEEECHHHHHHCEEEEEC
T ss_pred CCEEEEEEEcCHHHHhCCCEEEEE
Confidence 468999999999999999987763
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.27 E-value=17 Score=22.59 Aligned_cols=8 Identities=38% Similarity=1.344 Sum_probs=5.3
Q ss_pred ceEeCCCC
Q 031581 131 GSLTCTTC 138 (157)
Q Consensus 131 G~~~C~~C 138 (157)
|.+.|..|
T Consensus 29 ge~vC~~C 36 (58)
T 1dl6_A 29 GDMICPEC 36 (58)
T ss_dssp CCEECTTT
T ss_pred CeEEeCCC
Confidence 44577777
No 20
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=32.14 E-value=26 Score=23.37 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=25.9
Q ss_pred eeCCCCCCCCc--------CcCCCCCcccEEEEEcCCCeeeeeeCCCCCCCceE--eCCC
Q 031581 88 QPCFPCSGSGA--------QRCRFCMGTGSVTVELGGDEREFSKCINCDGVGSL--TCTT 137 (157)
Q Consensus 88 ~~C~~C~GsG~--------~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~G~~--~C~~ 137 (157)
+.|..|+..|= .+|-.|...|-+...... -.....|-+|...|++ .|+.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~-p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVL-PFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC--------------CCCBCSSSSCBSSCGGGCSS
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccC-CCCCCeecccCCCCcCcccCCc
Confidence 78999988775 356667777665321100 0124678888888887 6764
No 21
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=29.98 E-value=23 Score=24.91 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCCeEEEEEEecceeeeeeEEeE
Q 031581 50 DQNTVVAISVGLVSVAVGIGIPI 72 (157)
Q Consensus 50 ~~d~~~~l~vsl~~~~~G~~~~v 72 (157)
+.|+.+.+.|+|.+++.|.++.+
T Consensus 6 G~DL~~~~~Isl~eAllG~~i~v 28 (121)
T 1xao_A 6 GDDLVYEAEIDLLTAIAGGEFAL 28 (121)
T ss_dssp TTEEEEEEEEEHHHHHHCEEEEE
T ss_pred CCeEEEEEEcCHHHHhCCCEEEE
Confidence 46889999999999999998776
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=28.26 E-value=25 Score=29.20 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=14.4
Q ss_pred CceEeCCCCCCeeEEEeeeec----ceeccC
Q 031581 130 VGSLTCTTCQGTGIQPRYLDR----REFKDD 156 (157)
Q Consensus 130 ~G~~~C~~C~G~G~~~~~l~~----r~~~~~ 156 (157)
+|...|..| |.=+..+.+|. |.|.+|
T Consensus 40 ~G~~vC~~C-GlVl~e~~iD~g~EWR~f~~d 69 (345)
T 4bbr_M 40 EGDVVCALC-GLVLSDKLVDTRSEWRTFSND 69 (345)
T ss_dssp GTEEEETTT-CBEEESCCBCHHHHHTTTSCS
T ss_pred CCcEEeCCC-CCCccCcccccCccccCCCcc
Confidence 456678888 33233466763 456543
No 23
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=27.80 E-value=45 Score=31.90 Aligned_cols=31 Identities=29% Similarity=0.684 Sum_probs=19.2
Q ss_pred cCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCc
Q 031581 100 RCRFCMGTGSVTVELGGDE-REFSKCINCDGVG 131 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G 131 (157)
+|+.|.|.|.+..... .+ ....+|..|.|..
T Consensus 755 rC~~C~g~G~i~~em~-fl~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMH-FLPDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEEECCS-SSCCEEEECTTTTTCC
T ss_pred cccccccccceeeehh-cccccccccccccccc
Confidence 5889999998875431 11 2235666666653
No 24
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=27.21 E-value=47 Score=26.42 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=8.1
Q ss_pred CCeeeeeeCCCCCCCc
Q 031581 116 GDEREFSKCINCDGVG 131 (157)
Q Consensus 116 G~~~~~~~C~~C~G~G 131 (157)
+.+.....|+.|++.|
T Consensus 151 ~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 151 NMITEPSLCSECGGRS 166 (279)
T ss_dssp SSCCCCSCCTTTCCCC
T ss_pred CcccCCCcCCCCCCCC
Confidence 3344445566555544
No 25
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=26.28 E-value=45 Score=31.22 Aligned_cols=31 Identities=39% Similarity=0.716 Sum_probs=18.2
Q ss_pred cCCCCCcccEEEEEcCCCe-eeeeeCCCCCCCc
Q 031581 100 RCRFCMGTGSVTVELGGDE-REFSKCINCDGVG 131 (157)
Q Consensus 100 ~C~~C~GsG~v~~~~~G~~-~~~~~C~~C~G~G 131 (157)
.|+.|.|.|.+.... ..+ .....|..|+|..
T Consensus 640 ~c~~c~g~G~~~~~~-~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 640 RCEHCQGEGWVMVEL-LFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp BCTTTTTCSEEEETT-CSSSCEEEECTTTTTCC
T ss_pred ccccccCCCccchhh-hcCCccceecccccCcc
Confidence 488888888876532 112 2235566666554
No 26
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.63 E-value=1e+02 Score=20.54 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=18.3
Q ss_pred eeCCCCCCC-----CcCcCCCCCcccEEEEEcCCCeeeeeeCCCCCCC
Q 031581 88 QPCFPCSGS-----GAQRCRFCMGTGSVTVELGGDEREFSKCINCDGV 130 (157)
Q Consensus 88 ~~C~~C~Gs-----G~~~C~~C~GsG~v~~~~~G~~~~~~~C~~C~G~ 130 (157)
..||.|+.. +...|..|+.. +.....||+|+-.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~----------~~~~afCPeCgq~ 40 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD----------FSLQALCPDCRQP 40 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE----------EEEEEECSSSCSC
T ss_pred CCCCCCCCccccCCCceECcccccc----------CCCcccCcchhhH
Confidence 467777622 22446666552 2234578888544
Done!