Query 031582
Match_columns 157
No_of_seqs 113 out of 1845
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.2E-31 4.8E-36 170.9 16.2 147 8-155 10-156 (160)
2 KOG0027 Calmodulin and related 100.0 5.8E-29 1.3E-33 162.0 15.7 144 12-155 2-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.9 8.8E-26 1.9E-30 142.4 15.0 148 8-156 23-171 (172)
4 PTZ00183 centrin; Provisional 99.9 2.4E-25 5.3E-30 146.0 17.4 152 2-155 2-154 (158)
5 PTZ00184 calmodulin; Provision 99.9 1.7E-24 3.7E-29 140.5 16.8 144 11-155 4-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 6E-24 1.3E-28 133.2 15.3 140 10-154 24-164 (171)
7 KOG0030 Myosin essential light 99.9 4.1E-23 8.9E-28 127.4 12.6 143 12-155 5-151 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 5.2E-21 1.1E-25 127.0 14.7 140 12-155 27-175 (187)
9 KOG0037 Ca2+-binding protein, 99.9 7.7E-20 1.7E-24 121.4 14.5 133 17-156 56-189 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 4.9E-19 1.1E-23 117.7 13.4 138 13-154 24-174 (193)
11 KOG0036 Predicted mitochondria 99.8 1E-17 2.2E-22 120.4 15.3 136 12-154 8-145 (463)
12 PLN02964 phosphatidylserine de 99.6 6.6E-15 1.4E-19 113.6 13.2 121 10-135 135-273 (644)
13 KOG4223 Reticulocalbin, calume 99.6 4.3E-15 9.4E-20 104.1 9.2 138 14-151 159-301 (325)
14 KOG0037 Ca2+-binding protein, 99.5 5.4E-14 1.2E-18 93.8 9.4 93 15-115 121-216 (221)
15 cd05022 S-100A13 S-100A13: S-1 99.5 8.1E-14 1.7E-18 82.2 7.7 67 90-156 7-76 (89)
16 KOG0038 Ca2+-binding kinase in 99.5 1.8E-12 3.9E-17 81.3 11.6 140 12-155 22-177 (189)
17 KOG4223 Reticulocalbin, calume 99.5 4.6E-13 9.9E-18 94.1 9.6 139 15-153 74-226 (325)
18 PF13499 EF-hand_7: EF-hand do 99.5 3.4E-13 7.4E-18 75.7 7.1 62 92-153 1-66 (66)
19 KOG0027 Calmodulin and related 99.4 1.4E-12 3.1E-17 84.9 10.1 103 53-156 7-114 (151)
20 cd05022 S-100A13 S-100A13: S-1 99.4 5.2E-13 1.1E-17 78.8 6.9 67 14-80 4-73 (89)
21 cd05027 S-100B S-100B: S-100B 99.4 1.2E-12 2.5E-17 77.4 8.2 67 90-156 7-80 (88)
22 PF13499 EF-hand_7: EF-hand do 99.4 6.8E-13 1.5E-17 74.4 6.5 60 19-78 1-64 (66)
23 cd05027 S-100B S-100B: S-100B 99.4 1.8E-12 3.8E-17 76.6 8.0 68 14-81 4-78 (88)
24 KOG0377 Protein serine/threoni 99.4 1.1E-11 2.5E-16 90.5 13.5 136 17-154 463-614 (631)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.4 1.3E-11 2.8E-16 82.4 11.8 123 32-156 6-129 (193)
26 cd05029 S-100A6 S-100A6: S-100 99.4 9.1E-12 2E-16 73.5 8.5 67 90-156 9-80 (88)
27 PTZ00183 centrin; Provisional 99.4 2.6E-11 5.6E-16 79.3 11.2 101 54-155 17-118 (158)
28 COG5126 FRQ1 Ca2+-binding prot 99.3 4.2E-11 9E-16 77.5 10.8 105 50-156 13-121 (160)
29 cd05026 S-100Z S-100Z: S-100Z 99.3 1.8E-11 3.8E-16 73.2 8.5 67 90-156 9-82 (93)
30 smart00027 EH Eps15 homology d 99.3 1.6E-11 3.6E-16 73.9 8.2 66 12-79 4-69 (96)
31 cd05031 S-100A10_like S-100A10 99.3 1.8E-11 3.9E-16 73.4 8.0 67 90-156 7-80 (94)
32 PTZ00184 calmodulin; Provision 99.3 5.9E-11 1.3E-15 76.7 10.7 101 54-155 11-112 (149)
33 KOG0040 Ca2+-binding actin-bun 99.3 5.2E-11 1.1E-15 97.2 12.3 135 11-153 2246-2396(2399)
34 cd05025 S-100A1 S-100A1: S-100 99.3 2.7E-11 5.8E-16 72.4 8.3 67 90-156 8-81 (92)
35 cd05025 S-100A1 S-100A1: S-100 99.3 2.8E-11 6.2E-16 72.3 7.9 67 15-81 6-79 (92)
36 cd05031 S-100A10_like S-100A10 99.3 3.2E-11 6.9E-16 72.3 7.5 67 15-81 5-78 (94)
37 cd05026 S-100Z S-100Z: S-100Z 99.3 3.8E-11 8.2E-16 71.8 7.7 68 14-81 6-80 (93)
38 cd05029 S-100A6 S-100A6: S-100 99.3 5E-11 1.1E-15 70.4 7.7 66 14-79 6-76 (88)
39 cd00213 S-100 S-100: S-100 dom 99.2 4.4E-11 9.6E-16 70.9 7.1 67 14-80 4-77 (88)
40 smart00027 EH Eps15 homology d 99.2 8.8E-11 1.9E-15 70.7 8.4 65 90-156 9-73 (96)
41 cd00052 EH Eps15 homology doma 99.2 6.3E-11 1.4E-15 66.4 7.1 61 94-156 2-62 (67)
42 cd00213 S-100 S-100: S-100 dom 99.2 1.2E-10 2.6E-15 69.0 7.9 67 90-156 7-80 (88)
43 PF13833 EF-hand_8: EF-hand do 99.2 7.7E-11 1.7E-15 63.3 6.2 52 104-155 1-53 (54)
44 cd05023 S-100A11 S-100A11: S-1 99.2 2.4E-10 5.2E-15 67.6 8.6 67 90-156 8-81 (89)
45 KOG0028 Ca2+-binding protein ( 99.2 5.2E-10 1.1E-14 71.4 10.0 102 17-119 68-170 (172)
46 cd00051 EFh EF-hand, calcium b 99.2 2.8E-10 6E-15 62.3 7.5 61 93-153 2-62 (63)
47 cd00052 EH Eps15 homology doma 99.2 1.9E-10 4.1E-15 64.5 6.8 58 21-80 2-59 (67)
48 KOG2643 Ca2+ binding protein, 99.1 4.1E-10 9E-15 82.3 9.5 138 13-156 313-454 (489)
49 PLN02964 phosphatidylserine de 99.1 8.4E-10 1.8E-14 85.8 11.5 121 33-155 119-243 (644)
50 PF13833 EF-hand_8: EF-hand do 99.1 1.6E-10 3.5E-15 62.0 5.3 48 31-78 1-49 (54)
51 cd00051 EFh EF-hand, calcium b 99.1 5.4E-10 1.2E-14 61.1 6.8 59 20-78 2-60 (63)
52 cd05023 S-100A11 S-100A11: S-1 99.1 8.6E-10 1.9E-14 65.2 7.9 67 14-80 5-78 (89)
53 KOG0034 Ca2+/calmodulin-depend 99.1 2.1E-09 4.7E-14 71.7 10.4 101 20-120 68-176 (187)
54 cd00252 SPARC_EC SPARC_EC; ext 99.1 9.2E-10 2E-14 68.1 7.8 61 90-154 47-107 (116)
55 KOG2562 Protein phosphatase 2 99.1 1.9E-09 4.1E-14 79.4 10.4 136 12-151 272-420 (493)
56 PF14658 EF-hand_9: EF-hand do 99.1 1E-09 2.2E-14 60.3 6.6 61 95-155 2-64 (66)
57 cd05030 calgranulins Calgranul 99.0 2.3E-09 5E-14 63.4 7.5 67 90-156 7-80 (88)
58 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.2E-09 4.7E-14 66.4 7.5 63 13-79 43-106 (116)
59 PF14658 EF-hand_9: EF-hand do 99.0 1.1E-09 2.5E-14 60.1 5.5 59 22-80 2-62 (66)
60 KOG0041 Predicted Ca2+-binding 99.0 2.9E-09 6.3E-14 70.4 7.7 65 91-155 99-163 (244)
61 cd05030 calgranulins Calgranul 99.0 4.1E-09 9E-14 62.3 6.8 68 14-81 4-78 (88)
62 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.3E-13 67.8 8.2 109 8-116 89-200 (244)
63 KOG4251 Calcium binding protei 98.9 8.9E-09 1.9E-13 70.4 8.1 138 16-153 99-307 (362)
64 KOG2643 Ca2+ binding protein, 98.9 3.5E-08 7.5E-13 72.5 11.0 131 18-154 233-383 (489)
65 KOG0751 Mitochondrial aspartat 98.9 2.8E-08 6E-13 74.1 9.3 134 17-156 32-176 (694)
66 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.8E-13 47.2 3.7 29 19-47 1-29 (29)
67 KOG0036 Predicted mitochondria 98.7 1.3E-07 2.9E-12 69.0 9.2 98 53-156 13-111 (463)
68 cd05024 S-100A10 S-100A10: A s 98.7 2.5E-07 5.3E-12 54.5 8.0 66 15-81 5-75 (91)
69 KOG0030 Myosin essential light 98.7 9.6E-08 2.1E-12 59.8 6.3 62 16-78 86-147 (152)
70 cd05024 S-100A10 S-100A10: A s 98.7 3.4E-07 7.3E-12 53.9 8.3 65 91-156 8-77 (91)
71 PF00036 EF-hand_1: EF hand; 98.7 4.4E-08 9.6E-13 45.4 3.5 27 93-119 2-28 (29)
72 KOG0169 Phosphoinositide-speci 98.7 6.2E-07 1.4E-11 70.1 11.6 139 12-155 130-274 (746)
73 PF13405 EF-hand_6: EF-hand do 98.6 6.1E-08 1.3E-12 45.7 3.7 30 19-48 1-31 (31)
74 KOG0031 Myosin regulatory ligh 98.6 2.1E-07 4.6E-12 59.2 7.1 62 17-78 100-161 (171)
75 PF13405 EF-hand_6: EF-hand do 98.5 3E-07 6.4E-12 43.4 3.5 30 92-121 1-31 (31)
76 PRK12309 transaldolase/EF-hand 98.4 1.4E-06 3E-11 64.8 8.2 53 90-155 333-385 (391)
77 PF12763 EF-hand_4: Cytoskelet 98.4 1.1E-06 2.3E-11 53.4 5.7 65 11-78 3-67 (104)
78 PF12763 EF-hand_4: Cytoskelet 98.4 3.4E-06 7.5E-11 51.2 7.5 63 90-155 9-71 (104)
79 KOG0751 Mitochondrial aspartat 98.3 2.5E-06 5.4E-11 64.0 7.1 125 20-152 110-241 (694)
80 KOG2562 Protein phosphatase 2 98.3 1.4E-05 3.1E-10 59.5 10.5 138 16-156 172-344 (493)
81 PF13202 EF-hand_5: EF hand; P 98.3 1.3E-06 2.9E-11 38.9 3.2 25 20-44 1-25 (25)
82 PF14788 EF-hand_10: EF hand; 98.3 5E-06 1.1E-10 43.2 5.5 49 108-156 2-50 (51)
83 KOG1707 Predicted Ras related/ 98.3 6.5E-06 1.4E-10 63.0 8.4 144 8-154 185-376 (625)
84 KOG4666 Predicted phosphate ac 98.3 2.8E-06 6.2E-11 60.5 5.9 98 54-154 259-358 (412)
85 KOG0038 Ca2+-binding kinase in 98.2 1.1E-05 2.4E-10 51.1 7.8 100 21-120 74-178 (189)
86 PF13202 EF-hand_5: EF hand; P 98.2 2E-06 4.3E-11 38.3 2.9 23 94-116 2-24 (25)
87 PF14788 EF-hand_10: EF hand; 98.2 5.1E-06 1.1E-10 43.2 4.5 48 34-81 1-48 (51)
88 KOG0046 Ca2+-binding actin-bun 98.2 1.1E-05 2.3E-10 61.0 7.8 76 3-79 4-82 (627)
89 KOG0377 Protein serine/threoni 98.1 9.3E-06 2E-10 60.3 6.6 66 17-82 546-616 (631)
90 PRK12309 transaldolase/EF-hand 98.0 3.3E-05 7.2E-10 57.6 7.9 59 47-119 327-385 (391)
91 PF10591 SPARC_Ca_bdg: Secrete 98.0 1.8E-06 3.8E-11 53.4 0.7 59 53-114 53-111 (113)
92 KOG0040 Ca2+-binding actin-bun 98.0 3E-05 6.4E-10 65.0 6.9 65 91-155 2253-2324(2399)
93 PF09279 EF-hand_like: Phospho 97.9 3.7E-05 8E-10 44.8 5.4 62 93-155 2-69 (83)
94 KOG1029 Endocytic adaptor prot 97.7 0.00093 2E-08 53.2 11.4 61 92-154 196-256 (1118)
95 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.5E-05 3.2E-10 49.3 1.4 60 90-151 53-112 (113)
96 PF05042 Caleosin: Caleosin re 97.7 0.00036 7.7E-09 45.8 7.6 136 17-153 6-164 (174)
97 KOG4251 Calcium binding protei 97.7 0.00023 5.1E-09 49.2 7.0 67 53-119 100-168 (362)
98 KOG0046 Ca2+-binding actin-bun 97.6 0.00027 6E-09 53.7 6.9 65 91-156 19-86 (627)
99 smart00054 EFh EF-hand, calciu 97.5 0.00015 3.4E-09 32.4 3.2 27 20-46 2-28 (29)
100 KOG0035 Ca2+-binding actin-bun 97.5 0.0014 3.1E-08 53.1 10.3 138 10-152 739-883 (890)
101 KOG4666 Predicted phosphate ac 97.3 0.00088 1.9E-08 48.2 6.0 101 18-121 259-361 (412)
102 smart00054 EFh EF-hand, calciu 97.2 0.0005 1.1E-08 30.6 3.0 25 94-118 3-27 (29)
103 PF09279 EF-hand_like: Phospho 97.0 0.0018 3.9E-08 37.6 4.4 62 19-81 1-69 (83)
104 KOG4065 Uncharacterized conser 96.8 0.0051 1.1E-07 37.6 5.1 57 22-78 71-141 (144)
105 PLN02952 phosphoinositide phos 96.7 0.016 3.4E-07 45.8 8.8 88 67-155 13-110 (599)
106 KOG1955 Ral-GTPase effector RA 96.6 0.0082 1.8E-07 45.8 6.2 68 87-156 227-294 (737)
107 KOG1265 Phospholipase C [Lipid 96.5 0.096 2.1E-06 43.0 11.6 121 28-155 158-299 (1189)
108 KOG4065 Uncharacterized conser 96.4 0.012 2.6E-07 36.1 5.1 61 93-153 69-143 (144)
109 KOG1955 Ral-GTPase effector RA 96.4 0.016 3.5E-07 44.3 6.6 73 7-81 220-293 (737)
110 PF05042 Caleosin: Caleosin re 96.4 0.025 5.4E-07 37.3 6.7 32 124-155 93-124 (174)
111 KOG0169 Phosphoinositide-speci 96.3 0.052 1.1E-06 43.5 9.3 99 52-155 134-232 (746)
112 KOG0042 Glycerol-3-phosphate d 96.0 0.017 3.6E-07 44.9 5.1 71 11-81 586-656 (680)
113 KOG1029 Endocytic adaptor prot 96.0 0.014 3E-07 46.9 4.6 61 16-78 193-253 (1118)
114 PF05517 p25-alpha: p25-alpha 95.6 0.092 2E-06 34.3 6.8 56 101-156 12-70 (154)
115 KOG3555 Ca2+-binding proteogly 95.5 0.037 8.1E-07 40.4 5.0 97 19-120 212-311 (434)
116 KOG0042 Glycerol-3-phosphate d 95.4 0.035 7.5E-07 43.3 5.0 66 91-156 593-658 (680)
117 KOG0998 Synaptic vesicle prote 95.4 0.03 6.6E-07 46.2 4.9 138 12-154 123-344 (847)
118 PF05517 p25-alpha: p25-alpha 95.3 0.071 1.5E-06 34.8 5.5 62 20-81 1-69 (154)
119 KOG4578 Uncharacterized conser 95.3 0.0062 1.3E-07 44.0 0.5 64 15-78 330-394 (421)
120 KOG2243 Ca2+ release channel ( 95.1 0.051 1.1E-06 46.7 5.3 59 95-154 4061-4119(5019)
121 KOG3555 Ca2+-binding proteogly 94.7 0.12 2.5E-06 37.9 5.6 60 91-154 250-309 (434)
122 KOG4347 GTPase-activating prot 94.7 0.075 1.6E-06 42.0 4.9 75 71-147 535-610 (671)
123 PF09069 EF-hand_3: EF-hand; 94.4 0.57 1.2E-05 27.7 7.9 63 90-155 2-75 (90)
124 KOG1707 Predicted Ras related/ 94.3 0.15 3.3E-06 40.0 5.8 87 11-104 308-399 (625)
125 KOG4347 GTPase-activating prot 94.2 0.088 1.9E-06 41.6 4.3 76 35-113 535-612 (671)
126 KOG2243 Ca2+ release channel ( 93.9 0.11 2.5E-06 44.8 4.7 58 23-81 4062-4120(5019)
127 KOG3866 DNA-binding protein of 93.8 0.14 2.9E-06 37.1 4.4 59 94-152 247-321 (442)
128 PLN02222 phosphoinositide phos 93.0 0.55 1.2E-05 37.3 7.0 63 91-155 25-90 (581)
129 KOG4578 Uncharacterized conser 92.6 0.11 2.4E-06 37.8 2.5 62 92-153 334-396 (421)
130 PF08726 EFhand_Ca_insen: Ca2+ 92.3 0.19 4.2E-06 28.1 2.8 53 18-78 6-65 (69)
131 PLN02952 phosphoinositide phos 92.1 1.4 3.1E-05 35.2 8.3 87 31-118 13-109 (599)
132 cd07313 terB_like_2 tellurium 92.0 1.1 2.3E-05 26.9 6.1 82 32-116 13-97 (104)
133 PLN02228 Phosphoinositide phos 91.8 1.2 2.6E-05 35.4 7.4 63 91-155 24-92 (567)
134 KOG0998 Synaptic vesicle prote 90.7 0.15 3.3E-06 42.2 1.9 66 11-78 276-341 (847)
135 KOG3866 DNA-binding protein of 90.7 0.45 9.7E-06 34.6 3.9 57 22-78 248-320 (442)
136 PF14513 DAG_kinase_N: Diacylg 90.6 0.79 1.7E-05 29.4 4.6 71 32-104 5-82 (138)
137 PLN02230 phosphoinositide phos 90.3 2.1 4.6E-05 34.3 7.6 64 91-155 29-102 (598)
138 PF14513 DAG_kinase_N: Diacylg 89.8 1.9 4E-05 27.7 5.8 66 69-137 6-79 (138)
139 PRK09430 djlA Dna-J like membr 89.5 6 0.00013 28.4 8.8 103 30-135 67-174 (267)
140 PF07308 DUF1456: Protein of u 89.5 1.6 3.5E-05 24.3 4.7 47 110-156 16-62 (68)
141 PF11116 DUF2624: Protein of u 89.1 3 6.6E-05 24.3 6.2 34 106-139 13-46 (85)
142 PF12174 RST: RCD1-SRO-TAF4 (R 88.8 0.49 1.1E-05 26.5 2.4 34 123-156 21-54 (70)
143 PF08726 EFhand_Ca_insen: Ca2+ 88.6 0.59 1.3E-05 26.1 2.6 53 91-151 6-65 (69)
144 PF09069 EF-hand_3: EF-hand; 87.9 3.9 8.5E-05 24.2 7.0 63 18-83 3-77 (90)
145 KOG1264 Phospholipase C [Lipid 87.5 3.4 7.3E-05 34.4 7.0 141 13-154 138-292 (1267)
146 PF08976 DUF1880: Domain of un 87.3 0.75 1.6E-05 28.4 2.7 32 50-81 3-35 (118)
147 KOG4004 Matricellular protein 86.2 0.45 9.8E-06 32.3 1.4 48 67-117 201-248 (259)
148 PLN02223 phosphoinositide phos 86.1 4.5 9.8E-05 32.0 6.9 64 91-155 16-92 (537)
149 PRK00523 hypothetical protein; 85.9 2.6 5.7E-05 23.7 4.1 43 21-64 27-69 (72)
150 COG3763 Uncharacterized protei 85.8 3.3 7.2E-05 23.1 4.4 43 21-64 26-68 (71)
151 KOG0035 Ca2+-binding actin-bun 85.5 3.5 7.6E-05 34.5 6.3 66 90-155 746-816 (890)
152 PF01023 S_100: S-100/ICaBP ty 85.0 3.3 7.1E-05 20.9 4.0 32 15-46 3-36 (44)
153 KOG3449 60S acidic ribosomal p 84.9 6.8 0.00015 23.9 6.5 45 93-137 3-47 (112)
154 KOG2871 Uncharacterized conser 84.8 1.3 2.7E-05 33.1 3.2 66 17-82 308-375 (449)
155 KOG0039 Ferric reductase, NADH 84.7 2.8 6E-05 34.1 5.4 80 68-155 2-89 (646)
156 KOG4070 Putative signal transd 83.6 4.1 8.9E-05 26.5 4.8 86 17-102 11-109 (180)
157 KOG2301 Voltage-gated Ca2+ cha 83.2 0.79 1.7E-05 40.7 1.9 70 11-81 1410-1484(1592)
158 PF08414 NADPH_Ox: Respiratory 82.7 3.7 8.1E-05 24.6 4.1 61 91-156 30-93 (100)
159 PF03672 UPF0154: Uncharacteri 82.5 3.6 7.8E-05 22.6 3.7 42 22-64 20-61 (64)
160 PF00404 Dockerin_1: Dockerin 81.1 3.2 6.9E-05 17.4 2.5 15 101-115 1-15 (21)
161 KOG3077 Uncharacterized conser 81.1 18 0.00038 25.9 11.1 104 17-120 63-186 (260)
162 PF05099 TerB: Tellurite resis 79.9 4.2 9.1E-05 25.7 4.1 80 31-113 36-118 (140)
163 PRK01844 hypothetical protein; 79.4 5.9 0.00013 22.3 3.9 43 21-64 26-68 (72)
164 cd07313 terB_like_2 tellurium 78.0 5.8 0.00013 23.6 4.1 79 67-148 12-93 (104)
165 PF08414 NADPH_Ox: Respiratory 77.8 5.3 0.00012 24.0 3.6 41 17-62 29-69 (100)
166 PF09068 EF-hand_2: EF hand; 77.7 15 0.00033 23.2 6.8 29 91-119 97-125 (127)
167 KOG4403 Cell surface glycoprot 77.4 24 0.00052 27.3 7.7 96 30-130 40-141 (575)
168 PF04157 EAP30: EAP30/Vps36 fa 76.9 22 0.00048 24.7 9.0 33 106-138 112-147 (223)
169 PTZ00373 60S Acidic ribosomal 76.7 15 0.00032 22.7 5.5 46 92-137 4-49 (112)
170 TIGR01848 PHA_reg_PhaR polyhyd 76.6 12 0.00027 22.8 5.0 21 61-81 10-30 (107)
171 PF06648 DUF1160: Protein of u 76.2 6.5 0.00014 24.6 3.9 45 17-64 36-81 (122)
172 COG4103 Uncharacterized protei 75.3 19 0.00042 23.2 6.1 93 22-119 34-129 (148)
173 PLN02228 Phosphoinositide phos 75.1 13 0.00029 29.7 6.2 44 19-64 25-70 (567)
174 PLN02230 phosphoinositide phos 75.0 17 0.00037 29.4 6.8 63 18-81 29-102 (598)
175 PLN02222 phosphoinositide phos 74.3 17 0.00036 29.3 6.6 62 18-81 25-90 (581)
176 cd05833 Ribosomal_P2 Ribosomal 72.4 20 0.00043 22.0 5.5 45 93-137 3-47 (109)
177 TIGR03573 WbuX N-acetyl sugar 72.1 14 0.0003 27.6 5.5 43 105-153 300-342 (343)
178 KOG2871 Uncharacterized conser 70.3 4.2 9E-05 30.5 2.3 59 89-147 307-366 (449)
179 PRK00819 RNA 2'-phosphotransfe 67.3 16 0.00035 24.6 4.5 38 101-138 27-64 (179)
180 PF07879 PHB_acc_N: PHB/PHA ac 66.9 14 0.00031 20.2 3.4 38 98-135 10-57 (64)
181 PF04157 EAP30: EAP30/Vps36 fa 66.6 41 0.00088 23.4 9.7 115 16-136 95-214 (223)
182 PF03979 Sigma70_r1_1: Sigma-7 66.6 7.8 0.00017 22.3 2.6 47 15-65 4-50 (82)
183 cd07316 terB_like_DjlA N-termi 66.3 25 0.00054 20.8 7.5 80 32-115 13-97 (106)
184 cd00086 homeodomain Homeodomai 65.9 17 0.00037 18.8 6.0 46 10-62 5-50 (59)
185 COG5069 SAC6 Ca2+-binding acti 65.9 17 0.00037 28.5 4.8 86 12-102 479-565 (612)
186 TIGR01639 P_fal_TIGR01639 Plas 65.2 16 0.00034 19.8 3.5 32 32-63 7-38 (61)
187 PF07308 DUF1456: Protein of u 65.1 22 0.00048 19.8 5.0 32 35-66 14-45 (68)
188 PLN00138 large subunit ribosom 63.4 33 0.00072 21.2 5.4 45 93-137 3-47 (113)
189 COG4103 Uncharacterized protei 63.4 20 0.00043 23.2 4.1 58 95-154 34-93 (148)
190 PF11116 DUF2624: Protein of u 63.2 28 0.00061 20.3 7.0 43 33-75 13-55 (85)
191 KOG4004 Matricellular protein 62.6 5.6 0.00012 27.2 1.6 55 97-153 193-248 (259)
192 PF01885 PTS_2-RNA: RNA 2'-pho 61.7 18 0.00039 24.5 4.0 38 101-138 26-63 (186)
193 PF13551 HTH_29: Winged helix- 61.3 32 0.0007 20.4 6.4 52 12-63 58-111 (112)
194 KOG4403 Cell surface glycoprot 60.8 32 0.0007 26.6 5.4 84 66-153 40-127 (575)
195 PLN02223 phosphoinositide phos 60.0 43 0.00093 26.8 6.2 63 18-81 16-92 (537)
196 cd07177 terB_like tellurium re 58.1 35 0.00076 19.8 5.0 79 32-115 13-96 (104)
197 TIGR00624 tag DNA-3-methyladen 56.1 36 0.00077 23.0 4.6 102 17-121 52-167 (179)
198 PTZ00373 60S Acidic ribosomal 54.2 41 0.00088 20.8 4.3 50 24-78 9-58 (112)
199 KOG0506 Glutaminase (contains 53.7 48 0.001 26.1 5.4 63 92-154 87-157 (622)
200 KOG3077 Uncharacterized conser 52.3 87 0.0019 22.6 6.7 65 91-155 64-129 (260)
201 cd07176 terB tellurite resista 51.2 31 0.00068 20.5 3.6 79 32-114 16-100 (111)
202 cd04411 Ribosomal_P1_P2_L12p R 49.7 58 0.0013 19.8 5.8 30 108-137 17-46 (105)
203 PRK09430 djlA Dna-J like membr 49.6 58 0.0012 23.5 5.1 50 104-154 68-119 (267)
204 PF09336 Vps4_C: Vps4 C termin 49.5 31 0.00066 18.7 2.9 26 107-132 29-54 (62)
205 PF01885 PTS_2-RNA: RNA 2'-pho 49.4 38 0.00082 23.0 4.0 37 28-64 26-62 (186)
206 PF08461 HTH_12: Ribonuclease 49.3 31 0.00067 18.9 3.0 37 31-67 10-46 (66)
207 cd05833 Ribosomal_P2 Ribosomal 49.1 54 0.0012 20.1 4.3 50 24-78 7-56 (109)
208 PF12419 DUF3670: SNF2 Helicas 48.6 50 0.0011 21.2 4.3 49 104-152 80-138 (141)
209 PRK06402 rpl12p 50S ribosomal 48.2 63 0.0014 19.8 5.6 41 96-137 6-46 (106)
210 PF11422 IBP39: Initiator bind 47.8 85 0.0018 21.2 5.7 53 70-122 36-90 (181)
211 PF12486 DUF3702: ImpA domain 47.2 39 0.00083 22.1 3.6 34 13-46 64-97 (148)
212 KOG4301 Beta-dystrobrevin [Cyt 47.0 72 0.0016 24.0 5.2 95 58-154 114-214 (434)
213 KOG3449 60S acidic ribosomal p 46.7 68 0.0015 19.7 4.9 52 22-78 5-56 (112)
214 PF00046 Homeobox: Homeobox do 46.4 42 0.00091 17.3 5.9 45 10-61 5-49 (57)
215 TIGR02787 codY_Gpos GTP-sensin 45.7 93 0.002 22.2 5.4 49 9-63 174-222 (251)
216 PF09373 PMBR: Pseudomurein-bi 45.3 29 0.00063 16.1 2.1 16 105-120 2-17 (33)
217 PF03732 Retrotrans_gag: Retro 45.1 58 0.0012 18.5 4.5 46 70-119 26-72 (96)
218 PF07862 Nif11: Nitrogen fixat 44.3 32 0.0007 17.4 2.5 21 36-56 28-48 (49)
219 PF10437 Lip_prot_lig_C: Bacte 43.4 56 0.0012 18.7 3.7 42 110-153 44-86 (86)
220 PF02761 Cbl_N2: CBL proto-onc 43.0 69 0.0015 18.8 6.0 43 107-149 22-64 (85)
221 PRK00819 RNA 2'-phosphotransfe 40.6 85 0.0018 21.2 4.6 43 29-74 28-70 (179)
222 PF01316 Arg_repressor: Argini 39.9 69 0.0015 17.9 3.5 30 34-63 19-48 (70)
223 COG2818 Tag 3-methyladenine DN 39.8 32 0.0007 23.3 2.4 45 17-61 54-98 (188)
224 PF08349 DUF1722: Protein of u 39.5 47 0.001 20.5 3.1 30 124-153 66-95 (117)
225 PF06569 DUF1128: Protein of u 38.3 49 0.0011 18.6 2.6 32 13-46 34-65 (71)
226 PF05872 DUF853: Bacterial pro 38.0 1.9E+02 0.0041 23.0 6.5 51 71-121 106-158 (502)
227 cd07894 Adenylation_RNA_ligase 37.3 1.2E+02 0.0025 22.9 5.2 92 28-120 135-239 (342)
228 PF09107 SelB-wing_3: Elongati 37.1 55 0.0012 16.9 2.6 30 105-139 8-37 (50)
229 KOG1265 Phospholipase C [Lipid 36.9 2.9E+02 0.0062 24.1 10.5 85 64-155 158-249 (1189)
230 PLN00138 large subunit ribosom 36.8 1E+02 0.0023 19.1 4.3 46 28-78 11-56 (113)
231 PF01325 Fe_dep_repress: Iron 36.6 71 0.0015 17.1 4.4 55 12-75 2-56 (60)
232 KOG2419 Phosphatidylserine dec 36.3 61 0.0013 26.7 3.8 65 55-119 438-533 (975)
233 COG1460 Uncharacterized protei 36.2 89 0.0019 19.4 3.8 30 108-137 80-109 (114)
234 PF08672 APC2: Anaphase promot 36.1 74 0.0016 17.1 3.8 11 107-117 32-42 (60)
235 PF07499 RuvA_C: RuvA, C-termi 35.8 63 0.0014 16.2 4.8 38 111-152 4-41 (47)
236 PF07128 DUF1380: Protein of u 35.6 80 0.0017 20.4 3.6 32 35-66 27-58 (139)
237 PF02885 Glycos_trans_3N: Glyc 35.2 78 0.0017 17.1 4.6 29 106-134 13-42 (66)
238 COG2058 RPP1A Ribosomal protei 35.1 1.1E+02 0.0024 18.8 6.1 42 95-137 5-46 (109)
239 TIGR00135 gatC glutamyl-tRNA(G 34.5 76 0.0016 18.6 3.3 29 35-63 1-29 (93)
240 TIGR01209 RNA ligase, Pab1020 34.4 1.6E+02 0.0036 22.5 5.6 96 24-120 163-272 (374)
241 KOG4286 Dystrophin-like protei 34.3 28 0.0006 29.0 1.7 48 22-69 474-521 (966)
242 PF02337 Gag_p10: Retroviral G 33.8 91 0.002 18.5 3.4 11 139-149 69-79 (90)
243 PRK07571 bidirectional hydroge 33.3 1.5E+02 0.0032 19.8 5.7 45 7-51 11-68 (169)
244 COG1859 KptA RNA:NAD 2'-phosph 32.2 1.1E+02 0.0024 21.3 4.1 37 102-138 54-90 (211)
245 PRK14981 DNA-directed RNA poly 32.1 1.2E+02 0.0026 18.6 4.0 25 110-134 81-105 (112)
246 KOG0506 Glutaminase (contains 32.0 75 0.0016 25.1 3.6 57 22-78 90-154 (622)
247 KOG4286 Dystrophin-like protei 31.5 68 0.0015 26.9 3.4 60 93-153 472-531 (966)
248 KOG4629 Predicted mechanosensi 31.4 2E+02 0.0043 24.2 6.0 58 55-120 405-462 (714)
249 PRK14074 rpsF 30S ribosomal pr 31.2 59 0.0013 23.1 2.7 72 7-81 9-81 (257)
250 KOG1954 Endocytosis/signaling 30.8 1.2E+02 0.0026 23.5 4.3 44 32-77 457-500 (532)
251 cd08313 Death_TNFR1 Death doma 30.8 1E+02 0.0022 17.7 3.3 47 107-155 8-69 (80)
252 PF04963 Sigma54_CBD: Sigma-54 30.1 1.1E+02 0.0023 20.9 3.8 49 29-80 45-96 (194)
253 PRK00034 gatC aspartyl/glutamy 29.9 1E+02 0.0022 18.0 3.4 30 34-63 2-31 (95)
254 KOG1954 Endocytosis/signaling 29.8 1E+02 0.0022 23.8 3.9 57 93-152 446-502 (532)
255 PF11020 DUF2610: Domain of un 29.3 63 0.0014 18.6 2.1 34 121-154 43-76 (82)
256 cd07357 HN_L-whirlin_R2_like S 28.6 65 0.0014 18.6 2.1 26 95-120 23-48 (81)
257 PF02037 SAP: SAP domain; Int 28.3 75 0.0016 14.8 2.3 19 34-52 3-21 (35)
258 PRK05988 formate dehydrogenase 27.6 1.8E+02 0.004 19.0 5.4 40 13-52 4-56 (156)
259 cd07909 YciF YciF bacterial st 27.5 75 0.0016 20.7 2.6 23 13-35 45-67 (147)
260 PF14848 HU-DNA_bdg: DNA-bindi 27.4 1.6E+02 0.0035 18.3 4.3 32 105-136 26-57 (124)
261 TIGR03685 L21P_arch 50S riboso 27.1 1.5E+02 0.0033 18.0 5.6 41 96-137 6-46 (105)
262 COG4359 Uncharacterized conser 27.1 2.2E+02 0.0047 19.7 5.5 43 30-78 9-51 (220)
263 TIGR03798 ocin_TIGR03798 bacte 27.0 1.1E+02 0.0025 16.4 3.9 25 108-132 25-49 (64)
264 TIGR01529 argR_whole arginine 26.6 1.7E+02 0.0037 18.9 4.1 33 32-64 14-46 (146)
265 TIGR02675 tape_meas_nterm tape 26.5 1.1E+02 0.0023 17.3 2.8 32 13-46 11-42 (75)
266 smart00513 SAP Putative DNA-bi 26.3 82 0.0018 14.6 2.6 19 34-52 3-21 (35)
267 PF08671 SinI: Anti-repressor 26.1 73 0.0016 14.6 1.7 11 108-118 17-27 (30)
268 KOG4301 Beta-dystrobrevin [Cyt 26.1 1.3E+02 0.0028 22.7 3.8 60 96-156 115-174 (434)
269 cd05832 Ribosomal_L12p Ribosom 26.0 1.7E+02 0.0036 18.0 5.6 31 107-137 16-46 (106)
270 KOG1584 Sulfotransferase [Gene 25.6 2.8E+02 0.0061 20.5 6.4 63 72-134 156-227 (297)
271 PRK10353 3-methyl-adenine DNA 25.0 57 0.0012 22.2 1.8 104 17-121 53-170 (187)
272 PF11829 DUF3349: Protein of u 25.0 1.3E+02 0.0028 18.1 3.0 65 71-136 20-85 (96)
273 PF14164 YqzH: YqzH-like prote 24.8 1.3E+02 0.0029 16.5 4.4 45 90-134 7-55 (64)
274 PRK00441 argR arginine repress 24.6 1.9E+02 0.0042 18.8 4.1 33 32-64 16-48 (149)
275 TIGR03573 WbuX N-acetyl sugar 24.3 1.8E+02 0.0038 21.8 4.4 59 46-117 284-342 (343)
276 PTZ00315 2'-phosphotransferase 24.3 1.7E+02 0.0037 23.9 4.4 38 101-138 399-436 (582)
277 KOG4629 Predicted mechanosensi 23.8 2.5E+02 0.0054 23.7 5.3 58 91-155 404-461 (714)
278 PF06384 ICAT: Beta-catenin-in 23.4 1.3E+02 0.0028 17.3 2.7 22 39-60 21-42 (78)
279 TIGR02553 SipD_IpaD_SspD type 23.4 3.2E+02 0.0069 20.3 6.8 63 91-156 227-294 (308)
280 KOG2301 Voltage-gated Ca2+ cha 23.1 80 0.0017 29.1 2.7 31 91-121 1417-1447(1592)
281 cd05831 Ribosomal_P1 Ribosomal 23.0 1.9E+02 0.0041 17.6 4.0 42 32-78 15-56 (103)
282 PHA02335 hypothetical protein 22.9 1.6E+02 0.0036 18.0 3.2 29 68-104 22-51 (118)
283 PF11593 Med3: Mediator comple 22.7 2.4E+02 0.0052 21.6 4.6 12 107-118 7-18 (379)
284 PF06226 DUF1007: Protein of u 22.4 1E+02 0.0022 21.3 2.7 25 96-120 55-79 (212)
285 smart00389 HOX Homeodomain. DN 22.1 1.2E+02 0.0027 15.2 5.7 45 11-62 6-50 (56)
286 PF13075 DUF3939: Protein of u 21.6 35 0.00076 21.9 0.3 18 102-119 36-53 (140)
287 PHA02681 ORF089 virion membran 21.4 1.8E+02 0.0038 17.0 3.0 26 7-33 47-72 (92)
288 PF15017 AF1Q: Drug resistance 21.0 61 0.0013 19.1 1.1 16 101-116 69-84 (87)
289 PF09454 Vps23_core: Vps23 cor 20.9 92 0.002 17.1 1.8 16 141-156 37-52 (65)
290 cd08316 Death_FAS_TNFRSF6 Deat 20.4 2.1E+02 0.0045 17.1 3.8 10 127-136 50-59 (97)
291 PHA02105 hypothetical protein 20.3 1.6E+02 0.0035 15.8 3.5 48 34-81 4-56 (68)
292 PF10841 DUF2644: Protein of u 20.3 1.1E+02 0.0024 16.6 1.9 18 138-155 5-22 (60)
293 KOG1264 Phospholipase C [Lipid 20.1 1.4E+02 0.003 25.7 3.2 65 92-157 145-210 (1267)
294 PF08044 DUF1707: Domain of un 20.1 1.5E+02 0.0033 15.4 3.0 29 105-133 21-49 (53)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=170.87 Aligned_cols=147 Identities=27% Similarity=0.514 Sum_probs=135.8
Q ss_pred chhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhh
Q 031582 8 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELG 87 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~ 87 (157)
....+++.++++|+++|..+|++++|.|+..+|..+++.+|.+++..++..++..++. +.+.|+|.+|+.++.......
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 3446799999999999999999999999999999999999999999999999999998 889999999999555444455
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 88 SLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+++..||+.||.|++|+|+..+|+.+++.+|..+++++++.+++.+|.+++|.|+|++|++.+..
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 55699999999999999999999999999999999999999999999999999999999999998753
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=5.8e-29 Score=162.01 Aligned_cols=144 Identities=35% Similarity=0.644 Sum_probs=132.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhh--
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGS-- 88 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~-- 88 (157)
++..++.+++++|..||++++|+|+..++..+++.+|.+++..++..++..+|.+++|.|++.+|+. +.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 5443332222
Q ss_pred -HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 89 -LGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 89 -~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
....+..+|+.+|.+++|+|+..||+.++..+|.+.+.+++..++..+|.+++|.|+|.+|++++..
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 2358999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.8e-26 Score=142.38 Aligned_cols=148 Identities=26% Similarity=0.403 Sum_probs=138.2
Q ss_pred chhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhh
Q 031582 8 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMEL 86 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~ 86 (157)
+...+++.+.++++..|..||++++|+|+.++|.-+++++|+.+..+++..++..+|+++.|.|+|.+|+. +.......
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999 67766666
Q ss_pred hhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 87 GSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 87 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
+. .+++..+|+.+|-|++|.|+..+|+.+...+|+.++++++.+++..+|.+.+|.|+-++|..++++-
T Consensus 103 dt-~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 103 DT-KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred Cc-HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 64 4999999999999999999999999999999999999999999999999999999999999998753
No 4
>PTZ00183 centrin; Provisional
Probab=99.94 E-value=2.4e-25 Score=145.96 Aligned_cols=152 Identities=27% Similarity=0.419 Sum_probs=134.0
Q ss_pred CCCcccchhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hc
Q 031582 2 AESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MN 80 (157)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~ 80 (157)
..+++.... +++.++.+++.+|..+|++++|+|+..+|..+++.+|..++...+..++..+|.+++|.|+|.+|+. +.
T Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 2 RKRRSERPG-LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred CccccccCC-CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 344444443 5889999999999999999999999999999999999989999999999999999999999999999 44
Q ss_pred hhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 81 TKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
....... ..+.+..+|+.+|.+++|.|+..||..++...|..+++.++..++..+|.+++|.|++++|..++..
T Consensus 81 ~~~~~~~-~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 81 KKLGERD-PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHhcCCC-cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 3322222 2377999999999999999999999999999999999999999999999999999999999999865
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=1.7e-24 Score=140.50 Aligned_cols=144 Identities=31% Similarity=0.561 Sum_probs=129.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhH
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSL 89 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~ 89 (157)
.+++.++..++..|..+|.+++|.|+..+|..++..+|.+++...+..+++.++.+++|.|+|.+|+. +....... ..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-~~ 82 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-DS 82 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC-cH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999 44322222 22
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+..+|+.+|.+++|.|+.+++..++...+..++..++..++..+|.+++|.|++.+|+.++.+
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 367899999999999999999999999999998899999999999999999999999999998864
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.93 E-value=6e-24 Score=133.23 Aligned_cols=140 Identities=20% Similarity=0.379 Sum_probs=129.7
Q ss_pred hhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhh
Q 031582 10 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGS 88 (157)
Q Consensus 10 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~ 88 (157)
.++++.||+++++.|..+|+|++|.|++++++..+..+|..++++++..++... .|.|+|.-|+. +...+...++
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCH
Confidence 477999999999999999999999999999999999999999999999999665 57899999999 6666555555
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 89 LGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
++.+..||+.||.+++|+|..+.|+.+|...|..+++++++.++..+-.+..|.++|..|+..+.
T Consensus 100 -e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 -EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred -HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999886
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=4.1e-23 Score=127.42 Aligned_cols=143 Identities=23% Similarity=0.409 Sum_probs=124.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCC--CCCccchHHHHh-hchhhhhh-h
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTN--NDGLLSLEEFLE-MNTKDMEL-G 87 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~--~~~~i~~~ef~~-~~~~~~~~-~ 87 (157)
.++++..+++++|..||..++|+|+..+..++|+++|.+|+..++...+...+++ +-..++|++|+. +......+ .
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 4567789999999999999999999999999999999999999999999998876 457899999999 44322211 1
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 88 SLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+.+..-++++|++++|+|...||+.+|.++|+.+++++++.+++-. .|.+|.|.|+.|++.+.+
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 2347788899999999999999999999999999999999999999876 477899999999998753
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.88 E-value=5.2e-21 Score=126.96 Aligned_cols=140 Identities=26% Similarity=0.417 Sum_probs=117.3
Q ss_pred ccHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCc-cchHHHHhhchhhhhhhhH
Q 031582 12 ETLNHVLSLVETFRAFDSD-NDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGL-LSLEEFLEMNTKDMELGSL 89 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~~ 89 (157)
++..+|..+...|.++|.+ ++|+|+.+||..+. .+..++ -...++..++.+++|. |+|.+|+.......+....
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 6788999999999999999 99999999999999 444444 3467888888877777 9999999965655665555
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCC--HHH----HHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENL-GVGLS--LAD----CQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
.++++.||++||.+++|.|+.+|+.+++..+ +...+ ++. ++..+..+|.++||+|+++||+.++.+
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 5799999999999999999999999999986 44444 444 556778899999999999999998764
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.85 E-value=7.7e-20 Score=121.37 Aligned_cols=133 Identities=24% Similarity=0.318 Sum_probs=122.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHH
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSV-GYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKA 95 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (157)
-..+...|...|.+++|+|+.+|+..+|... .-.++.+.+..++..+|.+..|+|.+.||..+... .+.|+.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~-------i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY-------INQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-------HHHHHH
Confidence 4578889999999999999999999999854 46678999999999999999999999999995543 588999
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 96 AFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
+|+.+|.|++|+|+..||++.|..+|..+++.-.+.+++.+|....|.|.+++|++++..+
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998779999999999998765
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.82 E-value=4.9e-19 Score=117.69 Aligned_cols=138 Identities=23% Similarity=0.354 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHH
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVG-YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLG 90 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~ 90 (157)
++.++..|++-|..- -++|.++.++|..++.... ..-+......+|+.+|.+++|.|+|.||+. +... .++...
T Consensus 24 ~~~ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~--~rGt~e 99 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT--SRGTLE 99 (193)
T ss_pred CHHHHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH--cCCcHH
Confidence 445555555555542 2489999999999999865 556677899999999999999999999999 6553 334445
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHh----CC-------CCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENL----GV-------GLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
+.+..+|++||.|++|.|+++|+..++... +. ..+...+..+|+.+|.|+||.||+++|.....
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 889999999999999999999999999875 21 12345588999999999999999999998654
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.79 E-value=1e-17 Score=120.39 Aligned_cols=136 Identities=22% Similarity=0.359 Sum_probs=125.1
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhH
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYR-ASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSL 89 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~ 89 (157)
..++...+++.+|..+|.+++|.++..++.+.+..+..+ +..+....++..+|.+.+|.++|++|.. +...
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------- 80 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------- 80 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-------
Confidence 355566789999999999999999999999999998777 7788999999999999999999999999 5542
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
+.++..+|..+|.+.||.|...|+.+.++.+|.+++++++..+++..|.++.+.|+++||..++.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 47799999999999999999999999999999999999999999999999999999999998875
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.64 E-value=6.6e-15 Score=113.56 Aligned_cols=121 Identities=23% Similarity=0.312 Sum_probs=100.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHccCCCCCCccchHHHHhhchhhhh
Q 031582 10 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVG-YRASEED---VREMMRQGDTNNDGLLSLEEFLEMNTKDME 85 (157)
Q Consensus 10 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~ 85 (157)
..+...++++++++|..+|+|++|++ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.+......
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 45677889999999999999999997 888999999 5888887 899999999999999999999994443333
Q ss_pred hhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH-------------hCCCCCH-HHHHHHHHH
Q 031582 86 LGSLGNLLKAAFESLNLDGDDILTGAELHEVIEN-------------LGVGLSL-ADCQEIIAS 135 (157)
Q Consensus 86 ~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~-------------~~~~~~~-~~~~~~~~~ 135 (157)
.. ..+++..+|+.+|.|++|.|+.+||..++.. .|..++. .+++.+++.
T Consensus 211 ~~-seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 211 LV-AANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred CC-CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 22 3478999999999999999999999999998 4544554 556666643
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.3e-15 Score=104.14 Aligned_cols=138 Identities=26% Similarity=0.310 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHccCCCCCCccchHHHHh-hchhhh---hhhh
Q 031582 14 LNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRA-SEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDM---ELGS 88 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~---~~~~ 88 (157)
++.+.+-++.|+..|.|++|.++.+||..+|..-..+. ..--+..-+..+|+|++|.|+++||+. +..... .+..
T Consensus 159 ~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW 238 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW 238 (325)
T ss_pred HHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc
Confidence 34577889999999999999999999999987544322 223455667789999999999999999 776543 2222
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHH
Q 031582 89 LGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQL 151 (157)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (157)
-..+-.+.+..+|+|+||.++.+|++..+-..+...+..++..++...|.|+||+||++|.+.
T Consensus 239 v~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 239 VLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 224556888999999999999999998888777777888999999999999999999999764
No 14
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.55 E-value=5.4e-14 Score=93.76 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHH
Q 031582 15 NHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLL 93 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~ 93 (157)
..++.|+.+|+.+|+|++|.|+..||..+|..+|+.++++-.+-+++.++..++|.+.|++|+. +.. ...+
T Consensus 121 ~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~--------L~~l 192 (221)
T KOG0037|consen 121 KYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV--------LQRL 192 (221)
T ss_pred HHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH--------HHHH
Confidence 5589999999999999999999999999999999999999999999999988799999999999 555 4778
Q ss_pred HHHHhhhcCCCCCccC--HHHHHH
Q 031582 94 KAAFESLNLDGDDILT--GAELHE 115 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~--~~el~~ 115 (157)
..+|+.+|.+.+|.|+ .++|..
T Consensus 193 t~~Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 193 TEAFRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHHHHhccccceeEEEeHHHHHH
Confidence 9999999999999876 455544
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.52 E-value=8.1e-14 Score=82.24 Aligned_cols=67 Identities=24% Similarity=0.371 Sum_probs=62.3
Q ss_pred HHHHHHHHhhhcC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNL-DGDDILTGAELHEVIEN-LGVGLSL-ADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~-~~~g~I~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|+.||+ +++|+|+..||+.++.. +|..+++ ++++.+++.+|.|+||.|+|+||+.++.++
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3678999999999 99999999999999999 8877888 899999999999999999999999998765
No 16
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.48 E-value=1.8e-12 Score=81.27 Aligned_cols=140 Identities=22% Similarity=0.330 Sum_probs=106.3
Q ss_pred ccHHHHHHHHHHHHHhCCCC-----------CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhc
Q 031582 12 ETLNHVLSLVETFRAFDSDN-----------DGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
++.++|-++.+.|..+.++- .-+++.+.+.++- .+.-++-. +++...+..+|.|.++|++|+.+.
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMP-ELkenpfk---~ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMP-ELKENPFK---RRICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhCh-hhhcChHH---HHHHHHhccCCCCcccHHHHHHHH
Confidence 45667777777777765431 1234444444432 33334444 566777888999999999999977
Q ss_pred hhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHH----HHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 81 TKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLSLAD----CQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
.+..+..+..-++..||+.||-|+|+.|-.+++...+..+. ..+++++ ++.++..+|.++||+|++.+|..++.+
T Consensus 98 SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 98 SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 77666666667899999999999999999999999999874 6788877 556778899999999999999987753
No 17
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.6e-13 Score=94.12 Aligned_cols=139 Identities=23% Similarity=0.270 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhh--------hh
Q 031582 15 NHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKD--------ME 85 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~--------~~ 85 (157)
+...++..++.+.|.+++|.|+..++..++...-......+...-+..+|.+.+|.|+|+++.. ..... ..
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 3567899999999999999999999999987654455566777788899999999999999999 54321 00
Q ss_pred hh----hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 86 LG----SLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 86 ~~----~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
.. .....-..-|+..|.|++|.++.+||..++..-. .++.+-.+.+-+...|.|+||+|+++||+.-|
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 00 1124466789999999999999999999998753 66777779999999999999999999998754
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.47 E-value=3.4e-13 Score=75.66 Aligned_cols=62 Identities=32% Similarity=0.612 Sum_probs=54.2
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHHhcCCCCccccHHHHHHHH
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLAD----CQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
+++.+|+.+|.+++|.|+.+||..++..++...++.. +..+++.+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3688999999999999999999999999986665555 4455999999999999999999875
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=1.4e-12 Score=84.87 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=87.5
Q ss_pred HHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCC-----CHH
Q 031582 53 EEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGL-----SLA 127 (157)
Q Consensus 53 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~-----~~~ 127 (157)
..++..+|..+|.+++|.|+-.++..+......... ..++..++..+|.+++|.|+.+||..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t-~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPT-EEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 357889999999999999999999994444443333 48899999999999999999999999999875332 345
Q ss_pred HHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 128 DCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 128 ~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
++.++|+.+|.+++|.|+..++..+|..+
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 89999999999999999999999999864
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=5.2e-13 Score=78.81 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHccCCCCCCccchHHHHhhc
Q 031582 14 LNHVLSLVETFRAFDS-DNDGSITGAELSGIFNS-VGYRASE-EDVREMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
+..+..+..+|+.||+ +++|+|+..||+.++.. +|-.++. ++++.+++.+|.+++|.|+|+||+.+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 3567889999999999 99999999999999998 8877887 999999999999999999999999933
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.44 E-value=1.2e-12 Score=77.36 Aligned_cols=67 Identities=27% Similarity=0.430 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLN-LDGDD-ILTGAELHEVIEN-----LGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|+.|| .+++| .|+.+||+.++++ +|...++.+++++++.+|.|++|.|+|++|+.++..+
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 367899999998 79999 6999999999999 7888899999999999999999999999999988764
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=6.8e-13 Score=74.42 Aligned_cols=60 Identities=38% Similarity=0.664 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHccCCCCCCccchHHHHh
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEE----DVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
+++++|..+|++++|+|+..||..++..++...+.. .++.+++.+|.+++|.|++.||+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 478999999999999999999999999998766543 444447788888888888888876
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.42 E-value=1.8e-12 Score=76.59 Aligned_cols=68 Identities=21% Similarity=0.428 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 14 LNHVLSLVETFRAFD-SDNDG-SITGAELSGIFNS-----VGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
+..+..++++|+.|| ++|+| +|+..+|..+|+. +|..+++.++..+++.+|.+++|.|+|++|+.+..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 355789999999998 79999 5999999999999 89999999999999999999999999999998443
No 24
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-11 Score=90.50 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhh-------
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNS-VGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELG------- 87 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~------- 87 (157)
-..+...|+.+|++++|+|+..++..++.. +|++++..-+..-+... +.+|.|.|.+... +........
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~--s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANG--SDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCC--CcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 457788999999999999999999999976 58888886665544444 4567899998877 433221111
Q ss_pred ---hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC----CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 88 ---SLGNLLKAAFESLNLDGDDILTGAELHEVIENLG----VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 88 ---~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.....+..+|+.+|.|++|.|+.+||++.++-++ ..+++.++.++.+.+|.|+||+|++.||++.+.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 0113478899999999999999999999888763 567888999999999999999999999998875
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=1.3e-11 Score=82.44 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=102.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCC-CCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCH
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNN-DGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTG 110 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~ 110 (157)
..+++...+..+... ..++..+++.+++.+..+. .|.++-.+|..+.....+.+........+|+.+|.|++|.|+.
T Consensus 6 ~~~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F 83 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDF 83 (193)
T ss_pred cccCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCH
Confidence 345556666666543 5788999999999997765 8999999999965555555666688999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 111 AELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 111 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
.||...+.-.-....++.++..|+.+|.|++|.|+++|++.++..+
T Consensus 84 ~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 84 LEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 9988888877666778888999999999999999999999998764
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.36 E-value=9.1e-12 Score=73.54 Aligned_cols=67 Identities=27% Similarity=0.469 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhcC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNL-DG-DDILTGAELHEVIEN---LGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~-~~-~g~I~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|..||. ++ +|+|+.+||+.++.. +|..++++++.++++.+|.+++|+|+|++|+.++.++
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3668899999998 67 899999999999974 5888999999999999999999999999999998765
No 27
>PTZ00183 centrin; Provisional
Probab=99.35 E-value=2.6e-11 Score=79.29 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=83.1
Q ss_pred HHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 031582 54 EDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL-GVGLSLADCQEI 132 (157)
Q Consensus 54 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-~~~~~~~~~~~~ 132 (157)
..+..+|..+|.+++|.|++.+|..+......... ...+..+|..+|.+++|.|+.+||..++... ....+...+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~-~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPK-KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46778899999999999999999983332222122 3679999999999999999999999988764 345567789999
Q ss_pred HHHhcCCCCccccHHHHHHHHHh
Q 031582 133 IASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 133 ~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
|+.+|.+++|.|+..+|..++..
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999998864
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.33 E-value=4.2e-11 Score=77.49 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=87.2
Q ss_pred CCCHH---HHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCC
Q 031582 50 RASEE---DVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLS 125 (157)
Q Consensus 50 ~~~~~---~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~~~~ 125 (157)
.++.+ ++...|..+|++++|.|+..++..+....+...+ ...+..+|..+|. +.|.|+..+|..++...- ..-+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s-~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPS-EAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCc-HHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 44554 4556688889999999999999995554444333 4889999999999 999999999999999764 5567
Q ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 126 LADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 126 ~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
++++..+|+.+|.+++|+|+..++..++..+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhh
Confidence 8899999999999999999999999998753
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.33 E-value=1.8e-11 Score=73.22 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhc-CCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLN-LDGDD-ILTGAELHEVIENL-----GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|..|| .|++| +|+..||+.++... ....++.+++.+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 366888999999 78998 59999999999763 334577899999999999999999999999998765
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.32 E-value=1.6e-11 Score=73.88 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhh
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEM 79 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 79 (157)
+++.++..++++|..+|++++|+|+..++..+++..| ++.+++..++..++.+++|.|+|++|+.+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~ 69 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALA 69 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 5788999999999999999999999999999999865 67889999999999999999999999993
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.31 E-value=1.8e-11 Score=73.40 Aligned_cols=67 Identities=27% Similarity=0.415 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhcC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNL-DG-DDILTGAELHEVIEN-----LGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~-~~-~g~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|..+|. ++ +|.|+..|++.+++. +|..++++++..++..+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3678999999997 87 699999999999986 4567889999999999999999999999999988754
No 32
>PTZ00184 calmodulin; Provisional
Probab=99.30 E-value=5.9e-11 Score=76.72 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=81.9
Q ss_pred HHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHH
Q 031582 54 EDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLSLADCQEI 132 (157)
Q Consensus 54 ~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~~~~~~~~~~~ 132 (157)
+.+...|..+|.+++|.|++.+|..+......... .+.+..+|+.+|.+++|.|+.++|..++.... .......+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 35667788899999999999999984332222122 36899999999999999999999999988653 34456678899
Q ss_pred HHHhcCCCCccccHHHHHHHHHh
Q 031582 133 IASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 133 ~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
|..+|.+++|.|+.++|..++..
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHH
Confidence 99999999999999999988864
No 33
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.30 E-value=5.2e-11 Score=97.25 Aligned_cols=135 Identities=21% Similarity=0.375 Sum_probs=108.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHccCCCCCCccchHHHHh-hchh
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRA-------SEEDVREMMRQGDTNNDGLLSLEEFLE-MNTK 82 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~ 82 (157)
..+++++.++..+|..||++++|.++..+|..||+.+|+++ ++++++.++..+|++.+|+|+..+|+. |...
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 46888999999999999999999999999999999999887 344899999999999999999999999 6665
Q ss_pred hhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH----hcC----CCCccccHHHHHHHH
Q 031582 83 DMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIAS----MDG----DGDGAVSFEDLQLIV 153 (157)
Q Consensus 83 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~----~~~g~i~~~eF~~~l 153 (157)
....--..+.+..+|+.+|. +..+|+.++++..| |++++.-.+.. +++ ...+.++|.+|+..+
T Consensus 2326 ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 54433334689999999998 88999999987544 55554444433 333 224579999998765
No 34
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.30 E-value=2.7e-11 Score=72.37 Aligned_cols=67 Identities=25% Similarity=0.504 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhc-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLN-LDGDD-ILTGAELHEVIEN-LG----VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D-~~~~g-~I~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
.+.++.+|..+| .+++| .|+..|++.+++. +| ...++.+++.+++.+|.+++|.|+|++|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 367999999997 99999 5999999999986 44 34688899999999999999999999999998764
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.29 E-value=2.8e-11 Score=72.27 Aligned_cols=67 Identities=21% Similarity=0.454 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhC-CCCCCc-ccHHHHHHHHHH-cC----CCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 15 NHVLSLVETFRAFD-SDNDGS-ITGAELSGIFNS-VG----YRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 15 ~~~~~~~~~F~~~D-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
..+..++++|..|| .+++|+ |+..+|..+|+. +| ..++..+++.+++.+|.+++|.|+|++|+.+..
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 44688999999997 999995 999999999985 44 457899999999999999999999999999444
No 36
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.27 E-value=3.2e-11 Score=72.33 Aligned_cols=67 Identities=24% Similarity=0.455 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 15 NHVLSLVETFRAFDS-DN-DGSITGAELSGIFNS-----VGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
..+..++.+|..||. ++ +|+|+..|+..+++. +|..++.+++..+++.+|.+++|.|+|++|+.+..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346789999999997 87 799999999999986 57788999999999999999999999999998433
No 37
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=3.8e-11 Score=71.77 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 14 LNHVLSLVETFRAFD-SDNDG-SITGAELSGIFNS-V----GYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
+..+..+.++|..|| +|++| +|+..||..++.. + +...+..++..+++.+|.+++|.|+|+||+.+..
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 345788999999999 78998 5999999999976 2 3445788999999999999999999999999444
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.26 E-value=5e-11 Score=70.40 Aligned_cols=66 Identities=17% Similarity=0.429 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHccCCCCCCccchHHHHhh
Q 031582 14 LNHVLSLVETFRAFDS-DN-DGSITGAELSGIFN---SVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEM 79 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 79 (157)
++.+..+-.+|.+||. +| +|+|+..||..+++ .+|.+++.+++..+++.+|.+++|.|+|++|+.+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~l 76 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTF 76 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 3567888999999997 66 89999999999997 3699999999999999999999999999999983
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.24 E-value=4.4e-11 Score=70.85 Aligned_cols=67 Identities=19% Similarity=0.439 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHccCCCCCCccchHHHHhhc
Q 031582 14 LNHVLSLVETFRAFDS--DNDGSITGAELSGIFNS-VGYR----ASEEDVREMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
+.+++.++++|..+|+ +++|+|+..+|..+++. +|.+ ++..++..++..++.+++|.|+|++|+.+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 5678899999999999 89999999999999986 5544 458999999999999999999999999933
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.24 E-value=8.8e-11 Score=70.70 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|..+|.+++|.|+.+|+..+++..+ ++++++..++..+|.+.+|.|++++|+.++..+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 47799999999999999999999999999876 788999999999999999999999999988653
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=6.3e-11 Score=66.43 Aligned_cols=61 Identities=26% Similarity=0.452 Sum_probs=55.7
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 94 KAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
+.+|..+|.+++|.|+.+|+..++...| .+++++..++..+|.+++|.|++.+|+..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999999887 588899999999999999999999999988643
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.22 E-value=1.2e-10 Score=69.02 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhcC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNL--DGDDILTGAELHEVIEN-LGVG----LSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~--~~~g~I~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|..+|. +++|.|+.+|+..+++. +|.. .+..++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678999999999 89999999999999986 4533 458899999999999999999999999988653
No 43
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.21 E-value=7.7e-11 Score=63.34 Aligned_cols=52 Identities=27% Similarity=0.550 Sum_probs=48.8
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 104 GDDILTGAELHEVIENLGVG-LSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 104 ~~g~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
.+|.|+.++|+.++..+|.. +++.++..++..+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36999999999999888988 99999999999999999999999999999875
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.20 E-value=2.4e-10 Score=67.61 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=58.1
Q ss_pred HHHHHHHHhh-hcCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFES-LNLDGDD-ILTGAELHEVIENL-----GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~-~D~~~~g-~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+..+|.. .|.+++| .|+.+||+.++... +....+.+++.+++.+|.|+||.|+|++|+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4778999999 6787876 99999999999986 335567899999999999999999999999988764
No 45
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5.2e-10 Score=71.38 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHH
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNS-VGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKA 95 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (157)
.+++.++..-+|++++|+|+..+|...+.. +|..-+.+++...|+.+|.+++|.|++.+|+.+...+.+.-.. +++..
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD-~El~e 146 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTD-EELME 146 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccH-HHHHH
Confidence 346677788899999999999999999764 6777799999999999999999999999999976666554443 78999
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHH
Q 031582 96 AFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
.....|.+++|-|+.+||..+++.
T Consensus 147 MIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 147 MIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999988764
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.17 E-value=2.8e-10 Score=62.33 Aligned_cols=61 Identities=36% Similarity=0.694 Sum_probs=57.3
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
+..+|..+|.+++|.|+.+++..+++.++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999875
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.17 E-value=1.9e-10 Score=64.48 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=53.2
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhc
Q 031582 21 VETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 21 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
+++|..+|++++|+|+..++..++..+|. +.+++..++..++.+++|.|+|.+|+.+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 57899999999999999999999998875 78899999999999999999999999833
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.15 E-value=4.1e-10 Score=82.27 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCH--HHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhH
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSV-GYRASE--EDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSL 89 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~--~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 89 (157)
...+.+.++--|..+|+..+|.|+..+|..++-.. +++... ..++.+-+.++..+ ..|+++||..+.......
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~-~gISl~Ef~~Ff~Fl~~l--- 388 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG-KGISLQEFKAFFRFLNNL--- 388 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC-CCcCHHHHHHHHHHHhhh---
Confidence 34456677788999999999999999998887654 444332 35677777777654 459999999966654442
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENL-GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
+.+..|...|-. ..+.|+..+|+++.... |.++++..++-+|..+|.|.||.|+.+||+.+|++-
T Consensus 389 -~dfd~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 389 -NDFDIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred -hHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 445555555543 35899999999998875 789998899999999999999999999999999763
No 49
>PLN02964 phosphatidylserine decarboxylase
Probab=99.14 E-value=8.4e-10 Score=85.78 Aligned_cols=121 Identities=15% Similarity=0.250 Sum_probs=89.6
Q ss_pred CcccHHHHHHHHHH--cC-CCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCcc
Q 031582 33 GSITGAELSGIFNS--VG-YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDIL 108 (157)
Q Consensus 33 g~i~~~e~~~~l~~--~~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 108 (157)
..++.+++...... .. .....+++...|..+|++++|.+ +...+. +... .+.......+..+|..+|.+++|.|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~-~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIE-DPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCC-CCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 46677766554432 11 11233567777899999999987 444433 3210 1111111348999999999999999
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 109 TGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 109 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
+.+||..++..++...+++++..+|+.+|.+++|.|+++||..+|..
T Consensus 197 dfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 197 SFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999999887789999999999999999999999999999875
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.13 E-value=1.6e-10 Score=62.05 Aligned_cols=48 Identities=38% Similarity=0.688 Sum_probs=46.0
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 31 NDGSITGAELSGIFNSVGYR-ASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 31 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
++|+|+.++|..++..+|.. ++++++..++..+|.+++|.|+|+||+.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFIS 49 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHH
Confidence 47999999999999888999 9999999999999999999999999998
No 51
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=5.4e-10 Score=61.14 Aligned_cols=59 Identities=47% Similarity=0.791 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 20 LVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 20 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
+..+|..+|.+++|.|+..++..++..++.+.+.+.+..++..++.+++|.|++.+|+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999987
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.10 E-value=8.6e-10 Score=65.24 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHccCCCCCCccchHHHHhhc
Q 031582 14 LNHVLSLVETFRA-FDSDNDG-SITGAELSGIFNSV-----GYRASEEDVREMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 14 ~~~~~~~~~~F~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
+..+..+..+|+. +|++++| +|+..||..++... +....+.++..+++.+|.+++|.|+|+||+.+.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 4568899999999 6787876 99999999999874 345567899999999999999999999999933
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.09 E-value=2.1e-09 Score=71.74 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHccCCCCCCccchHHHHh-hchhhhh-----hhhHHH
Q 031582 20 LVETFRAFDSDNDGS-ITGAELSGIFNSVGYRASEE-DVREMMRQGDTNNDGLLSLEEFLE-MNTKDME-----LGSLGN 91 (157)
Q Consensus 20 ~~~~F~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~-----~~~~~~ 91 (157)
..+++..++.+++|. |+.++|-+++...-.+-+.+ .++-+|+.+|.+++|.|+.+++.. +...... ......
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 367899999999988 99999999998765444444 888899999999999999999999 4443332 222346
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
.+...|..+|.++||.|+.+|++.++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 68889999999999999999999998753
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.09 E-value=9.2e-10 Score=68.09 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
...+..+|..+|.|++|.|+.+|+..+. ++ ..+..+..++..+|.|+||.||++||...+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3779999999999999999999999876 22 4466788899999999999999999999883
No 55
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.08 E-value=1.9e-09 Score=79.38 Aligned_cols=136 Identities=23% Similarity=0.329 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc----CCCCCCccchHHHHhhchhhhhhh
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQG----DTNNDGLLSLEEFLEMNTKDMELG 87 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~ef~~~~~~~~~~~ 87 (157)
++..+-..+.-.|-.+|+|.+|.|+++++...-.. .++...++++|..+ -...+|+++|++|+.+......+.
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 34444445555588899999999999999887543 35577888888833 344688999999999555544444
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-------C-CCCC-HHHHHHHHHHhcCCCCccccHHHHHH
Q 031582 88 SLGNLLKAAFESLNLDGDDILTGAELHEVIENL-------G-VGLS-LADCQEIIASMDGDGDGAVSFEDLQL 151 (157)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-------~-~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (157)
.. ..+..-|+++|.+++|.++..|++.+.+.. + +.++ +..+.+++..+.+...++|++++|..
T Consensus 349 t~-~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 TP-ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred Cc-cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 43 779999999999999999999999888764 2 2333 44466777778777899999999976
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.07 E-value=1e-09 Score=60.29 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=56.8
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHHhcCCCC-ccccHHHHHHHHHh
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENLGV-GLSLADCQEIIASMDGDGD-GAVSFEDLQLIVNS 155 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l~~ 155 (157)
.+|.++|.++.|.|...++..+|+..+. ..++++++.+.+.+|+++. |.|++++|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999986 8889999999999999886 99999999999975
No 57
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.03 E-value=2.3e-09 Score=63.40 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhcCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 90 GNLLKAAFESLNLD--GDDILTGAELHEVIE-NLGVGLS----LADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 90 ~~~~~~~f~~~D~~--~~g~I~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+...|..|+.. .+|.|+.+||+.++. .++..++ +.+++.++..+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 36688899999866 479999999999997 4555566 8999999999999999999999999998764
No 58
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.02 E-value=2.2e-09 Score=66.44 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-h
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-M 79 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~ 79 (157)
.+..+..+.-.|..+|.|++|+|+.+|+..+. ..+..+.+..++..+|.+++|.||+.||.. +
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 35567788888999999999999999988775 345567788888888888888888888888 5
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=99.02 E-value=1.1e-09 Score=60.09 Aligned_cols=59 Identities=20% Similarity=0.460 Sum_probs=55.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHccCCCCC-CccchHHHHhhc
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSVGY-RASEEDVREMMRQGDTNND-GLLSLEEFLEMN 80 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-~~i~~~ef~~~~ 80 (157)
..|..||+++.|.|...++..+|+.++. .+++.+++.+.+.+|+++. |.|+++.|+.++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 3699999999999999999999999988 9999999999999999988 999999999843
No 60
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.99 E-value=2.9e-09 Score=70.45 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=61.1
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
+.+..+|+.||.+.||+|+..||+.++..+|.+.|.--++.++...|.|.+|+|++.+|.-.++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 67889999999999999999999999999998888889999999999999999999999987764
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.96 E-value=4.1e-09 Score=62.31 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 14 LNHVLSLVETFRAFDSD--NDGSITGAELSGIFN-SVGYRAS----EEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 14 ~~~~~~~~~~F~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
+..+..+-.+|+.|+.. ++|+|+..||..++. .+|-.++ ..+++.+++.+|.+++|.|+|++|+.+..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 35578889999999865 489999999999997 5565566 89999999999999999999999999433
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.92 E-value=1.1e-08 Score=67.82 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=83.1
Q ss_pred chhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhh
Q 031582 8 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMEL 86 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~ 86 (157)
....++..+|.....+|+.||.+.+|+|+..|+..++..+|-+.+---+..++..+|.+.+|+|+|.+|+- +......-
T Consensus 89 eF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 89 EFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccc
Confidence 34467889999999999999999999999999999999999998888899999999999999999999998 54432210
Q ss_pred hhHHHHHHHHHhh--hcCCCCCccCHHHHHHH
Q 031582 87 GSLGNLLKAAFES--LNLDGDDILTGAELHEV 116 (157)
Q Consensus 87 ~~~~~~~~~~f~~--~D~~~~g~I~~~el~~~ 116 (157)
-.....+..+=+. .|....|.--...|...
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 0111333333333 67767776666555443
No 63
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.92 E-value=8.9e-09 Score=70.40 Aligned_cols=138 Identities=22% Similarity=0.313 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-C--CCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhh------
Q 031582 16 HVLSLVETFRAFDSDNDGSITGAELSGIFNSV-G--YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDME------ 85 (157)
Q Consensus 16 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~------ 85 (157)
--..+..+|.+.|.|.+|+|+..|+++++... . +.-+..+-+..|+.+|++++|.|+|+||.. +...-..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 34678899999999999999999999987652 1 222334556778999999999999999988 5432100
Q ss_pred ----------------------------------------------------hhhHHHHHHHHHhhhcCCCCCccCHHHH
Q 031582 86 ----------------------------------------------------LGSLGNLLKAAFESLNLDGDDILTGAEL 113 (157)
Q Consensus 86 ----------------------------------------------------~~~~~~~~~~~f~~~D~~~~g~I~~~el 113 (157)
++-....+..+.+.+|+|||..++..||
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 0001122666778889999999998888
Q ss_pred HHHHHH-----hCCCCCH----HHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 114 HEVIEN-----LGVGLSL----ADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 114 ~~~l~~-----~~~~~~~----~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
.+..-- .|..+.+ ...+++=...|.|.||.++++++..|+
T Consensus 259 islpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 259 ISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 764321 1223332 234556667788999999998887764
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3.5e-08 Score=72.46 Aligned_cols=131 Identities=20% Similarity=0.326 Sum_probs=94.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH------cCCC--------CC-HHHHH--HHHHccCCCCCCccchHHHHhhc
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNS------VGYR--------AS-EEDVR--EMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~------~~~~--------~~-~~~~~--~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
+.++-.|+.||.||+|.|+.+||..+... +|+. .+ ...+. -....+.+++++++++++|+.++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 34566799999999999999999988742 2321 01 11111 23456788999999999999977
Q ss_pred hhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHH---HHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 81 TKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLA---DCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~---~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
...+. +.+..-|..+|+...|.|+..+|..++-.+..-.+.. ..+..-+.++.. +-.||++||..+.+
T Consensus 313 e~Lq~-----Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 313 ENLQE-----EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHHHH-----HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 76553 7788899999999999999999999888764212211 244455556544 55799999988765
No 65
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.85 E-value=2.8e-08 Score=74.08 Aligned_cols=134 Identities=10% Similarity=0.225 Sum_probs=90.8
Q ss_pred HHHHHHHHHHh---CCCCCCcccHHHHHHH-HHHcCCCCCHHHHHHHHHc-cCCCCCCccchHHHHhhchhhhhhhhHHH
Q 031582 17 VLSLVETFRAF---DSDNDGSITGAELSGI-FNSVGYRASEEDVREMMRQ-GDTNNDGLLSLEEFLEMNTKDMELGSLGN 91 (157)
Q Consensus 17 ~~~~~~~F~~~---D~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~l~~~-~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 91 (157)
-.+++.+|-.+ +.++..+++.++|.+- +...+.+....++..++.. .|..+||.|+|+||+.+....+.++ .
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD---a 108 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD---A 108 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch---H
Confidence 44555555554 6788889999998554 4445555555555555554 5677899999999999766666554 5
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCC------CCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGV------GLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
....+|..+|+.+.|.++.+++..++..... .+..+-+.. .+...+-..++|.+|.+++..+
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ny~~f~Q~lh~~ 176 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHLNYAEFTQFLHEF 176 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhccHHHHHHHHHHH
Confidence 6889999999999999999999999987531 122211111 2333334456666666666543
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.78 E-value=1.3e-08 Score=47.20 Aligned_cols=29 Identities=38% Similarity=0.658 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFNSV 47 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 47 (157)
+++++|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47889999999999999999999998764
No 67
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.3e-07 Score=69.03 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=83.3
Q ss_pred HHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 031582 53 EEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQE 131 (157)
Q Consensus 53 ~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~ 131 (157)
+..+..+|..+|.+++|.++..+... +.....+ ....+....+|...|.|.+|.++.+||++.+.. .+.++..
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~ 86 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYR 86 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHH
Confidence 44788999999999999999999887 5544433 333488899999999999999999999999985 4567888
Q ss_pred HHHHhcCCCCccccHHHHHHHHHhc
Q 031582 132 IIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 132 ~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
+|+..|.++||+|+.+|.-+++..+
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l~~~ 111 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYLKDL 111 (463)
T ss_pred HHhhhccccCCccCHHHHHHHHHHh
Confidence 9999999999999999999888754
No 68
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=2.5e-07 Score=54.45 Aligned_cols=66 Identities=15% Similarity=0.344 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 15 NHVLSLVETFRAFDSDNDGSITGAELSGIFNS-----VGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
..+..+-.+|..|. .+.+.++..||..++.. ++-.-.+..+..++...|.|+||.|+|+||+.+..
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 45778889999998 55779999999999864 23444678999999999999999999999999443
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.68 E-value=9.6e-08 Score=59.79 Aligned_cols=62 Identities=31% Similarity=0.636 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 16 HVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 16 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
..+.+-+..+.||++++|.|...|++.+|..+|-+++++++..+++.. .+.+|.|+|+.|+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk 147 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVK 147 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHH
Confidence 356788889999999999999999999999999999999999999888 47889999999998
No 70
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.68 E-value=3.4e-07 Score=53.87 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=54.3
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENL-----GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
..+..+|..|..+ .++++..||+.++..- +..-.+..++.+++.+|.|+||.|+|.||+.++-.+
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5678899999854 5799999999999863 344467789999999999999999999999988654
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.66 E-value=4.4e-08 Score=45.36 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=16.5
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHH
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
+..+|+.+|+|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666553
No 72
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.65 E-value=6.2e-07 Score=70.07 Aligned_cols=139 Identities=18% Similarity=0.301 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHH
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGN 91 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 91 (157)
........+..+|...|++++|.++..+...+++.+...+....+..+++..+..+.+.+...+|..+......+ .
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----p 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----P 205 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----c
Confidence 344556788999999999999999999999999999999999999999999988899999999999955533332 2
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcCC----CCccccHHHHHHHHHh
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLG--VGLSLADCQEIIASMDGD----GDGAVSFEDLQLIVNS 155 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 155 (157)
++..+|..+..+ .+.++..++..++...+ .+.+.+.+..+++.+... +.+.++++.|..||.+
T Consensus 206 ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 206 EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 577888877655 89999999999999874 678888999999887543 3567999999999864
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.64 E-value=6.1e-08 Score=45.74 Aligned_cols=30 Identities=47% Similarity=0.711 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-HcC
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFN-SVG 48 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~-~~~ 48 (157)
+++.+|+.+|.+++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 565
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.63 E-value=2.1e-07 Score=59.24 Aligned_cols=62 Identities=24% Similarity=0.494 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
.+.+...|..||.+++|.|....++.+|...|-+++++++..+++.+..+..|.++|..|+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~ 161 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTY 161 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHH
Confidence 45678889999999999999999999999999999999999999999888889999999988
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.46 E-value=3e-07 Score=43.36 Aligned_cols=30 Identities=33% Similarity=0.628 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHH-HhC
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIE-NLG 121 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~-~~~ 121 (157)
+++.+|+.+|.|++|.|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367899999999999999999999998 454
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.44 E-value=1.4e-06 Score=64.78 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+..+|+.+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 47789999999999999999999942 578999999999999999999998865
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.40 E-value=1.1e-06 Score=53.39 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=56.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
.+++++.+....+|...++ ++|+|+..+...++... +++.+.+..||...|.+++|.+++.||+-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 3577889999999999985 68999999999999876 45578999999999999999999999999
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.38 E-value=3.4e-06 Score=51.19 Aligned_cols=63 Identities=24% Similarity=0.359 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+..+|..++. ++|.|+-++.+.++...+ ++.+.+..+....|.+++|.++.+||+-.|.-
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4788999999985 689999999999999887 99999999999999999999999999987754
No 79
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.32 E-value=2.5e-06 Score=63.98 Aligned_cols=125 Identities=15% Similarity=0.258 Sum_probs=79.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHcC------CCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHH
Q 031582 20 LVETFRAFDSDNDGSITGAELSGIFNSVG------YRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLL 93 (157)
Q Consensus 20 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~~------~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 93 (157)
...+|..||+.++|.+|.+++..++.... ++...+-+...| .....-.++|.+|.++.+... .+..
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~F---g~~~~r~~ny~~f~Q~lh~~~-----~E~~ 181 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHF---GDIRKRHLNYAEFTQFLHEFQ-----LEHA 181 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHh---hhHHHHhccHHHHHHHHHHHH-----HHHH
Confidence 45567777777777777777777766532 222233333322 222233466777766443322 2558
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc-CCCCccccHHHHHHH
Q 031582 94 KAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD-GDGDGAVSFEDLQLI 152 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d-~~~~g~i~~~eF~~~ 152 (157)
.++|+..|+.++|.|+.=++..++-+...++....+.+.+-... .+...++|+..|..+
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 89999999999999999999999988876666666666655544 344456777776544
No 80
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.30 E-value=1.4e-05 Score=59.50 Aligned_cols=138 Identities=12% Similarity=0.151 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCC-------------CHHHHHHHHHccCCCCCCccchHHHHh--
Q 031582 16 HVLSLVETFRAFDSDNDGSITGAELSGIFNSVG--YRA-------------SEEDVREMMRQGDTNNDGLLSLEEFLE-- 78 (157)
Q Consensus 16 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~-------------~~~~~~~l~~~~d~~~~~~i~~~ef~~-- 78 (157)
....+.++++.++..+.|++...+|...|..+- .++ ..-.++.+|-.+++...|+|+.++...
T Consensus 172 ~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~sn 251 (493)
T KOG2562|consen 172 THTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSN 251 (493)
T ss_pred HHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhH
Confidence 445667778889999999999999888887641 111 122455677778999999999999777
Q ss_pred hchhhhhhhhH-----------HHHHHHH---HhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH----hcCCC
Q 031582 79 MNTKDMELGSL-----------GNLLKAA---FESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIAS----MDGDG 140 (157)
Q Consensus 79 ~~~~~~~~~~~-----------~~~~~~~---f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~ 140 (157)
+.......... .+....+ |-.+|+|.+|.|+.+++..+-.. .++.--++.+|.. .-...
T Consensus 252 ll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~ 328 (493)
T KOG2562|consen 252 LLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKV 328 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeee
Confidence 44333222111 1223333 77889999999999998876543 3466678888883 33456
Q ss_pred CccccHHHHHHHHHhc
Q 031582 141 DGAVSFEDLQLIVNSL 156 (157)
Q Consensus 141 ~g~i~~~eF~~~l~~~ 156 (157)
+|+++|++|+.++..+
T Consensus 329 eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 329 EGRMDYKDFVDFILAE 344 (493)
T ss_pred cCcccHHHHHHHHHHh
Confidence 8999999999988653
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.29 E-value=1.3e-06 Score=38.92 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q 031582 20 LVETFRAFDSDNDGSITGAELSGIF 44 (157)
Q Consensus 20 ~~~~F~~~D~~~~g~i~~~e~~~~l 44 (157)
++..|+.+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998753
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.27 E-value=5e-06 Score=43.22 Aligned_cols=49 Identities=10% Similarity=0.248 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 108 LTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 108 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
++..|++.+|+.+...+.+..+..+|+..|.+.+|.+..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999998765
No 83
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.27 E-value=6.5e-06 Score=63.04 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=98.0
Q ss_pred chhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHccCCCC-----CCccchHHHHhhch
Q 031582 8 SEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFN-SVGYRASEEDVREMMRQGDTNN-----DGLLSLEEFLEMNT 81 (157)
Q Consensus 8 ~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~l~~~~d~~~-----~~~i~~~ef~~~~~ 81 (157)
..+.+.+..+..|.++|...|.|++|.++-.|+...-+ +++.++...++..+-..++... +..++..-|+-+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 44567888999999999999999999999999988754 5788888877776665553321 23355555554322
Q ss_pred hhhhhh-----------------------------------------hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 82 KDMELG-----------------------------------------SLGNLLKAAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 82 ~~~~~~-----------------------------------------~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
...+++ .....+..+|..+|.|+||.++..|+..++...
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 211111 112458899999999999999999999999987
Q ss_pred C-CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 121 G-VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 121 ~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
+ ..++..-.. ..--.+..|.++|..|...+.
T Consensus 345 P~~pW~~~~~~---~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 PGSPWTSSPYK---DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCCccc---ccceecccceeehhhHHHHHH
Confidence 4 333211100 011123578888888887664
No 84
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.26 E-value=2.8e-06 Score=60.52 Aligned_cols=98 Identities=11% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHH
Q 031582 54 EDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL-GVGLSLADCQE 131 (157)
Q Consensus 54 ~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-~~~~~~~~~~~ 131 (157)
..+..+|..+|.+++|.++|.+... +.-...+... ...++.+|++|+.+.||.+...+|--+++.. | +..-.+-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t-~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVT-PVIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPV 335 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCc-HHHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccc
Confidence 4677889999999999999999888 5444444333 4889999999999999999999999888864 4 44444556
Q ss_pred HHHHhcCCCCccccHHHHHHHHH
Q 031582 132 IIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 132 ~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
++...+...+|+|++.+|.++..
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHH
Confidence 88888888899999999998764
No 85
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.25 E-value=1.1e-05 Score=51.13 Aligned_cols=100 Identities=17% Similarity=0.245 Sum_probs=72.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhH---HHHHHH
Q 031582 21 VETFRAFDSDNDGSITGAELSGIFNSV-GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSL---GNLLKA 95 (157)
Q Consensus 21 ~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~---~~~~~~ 95 (157)
+++...|..||.|.++..+|..++.-+ ...+..-.+.-.|+.+|-++++.|.-.+... +.......-.. .-....
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 356677789999999999999988654 2344444555667889999999999999877 54433322121 123455
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 96 AFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
+....|.||||.++..||..++.+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 6677799999999999999988754
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.21 E-value=2e-06 Score=38.34 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=15.7
Q ss_pred HHHHhhhcCCCCCccCHHHHHHH
Q 031582 94 KAAFESLNLDGDDILTGAELHEV 116 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~~~el~~~ 116 (157)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777664
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.19 E-value=5.1e-06 Score=43.19 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=38.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 34 SITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 34 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
+++..|+.++|+.+++.+++..+..+|+.+|++++|.+.-+||..+..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 478899999999999999999999999999999999999999888543
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.18 E-value=1.1e-05 Score=60.98 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=67.2
Q ss_pred CCcccchhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCC---CHHHHHHHHHccCCCCCCccchHHHHhh
Q 031582 3 ESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRA---SEEDVREMMRQGDTNNDGLLSLEEFLEM 79 (157)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~l~~~~d~~~~~~i~~~ef~~~ 79 (157)
.+.+.....+++.++..++..|...| +++|+++..++..++...+... ..++++.++...+.+.+|.|+|++|+.+
T Consensus 4 v~~~~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 4 VSDPWLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGI 82 (627)
T ss_pred ccchhhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence 35566677889999999999999999 9999999999999999876443 4789999999999999999999999993
No 89
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.14 E-value=9.3e-06 Score=60.26 Aligned_cols=66 Identities=32% Similarity=0.471 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchh
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSV----GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTK 82 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~ 82 (157)
.+.+..+|+..|.|++|.|+.+||..+...+ ....+..++..+.+.+|-|+||.|++.||+. +...
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4567778888888888888888888776543 4667788888888888888888888888887 5543
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=3.3e-05 Score=57.57 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=52.0
Q ss_pred cCCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 031582 47 VGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 47 ~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
.|.......+..+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||...+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 36777788999999999999999999999952 456899999999999999999998874
No 91
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.00 E-value=1.8e-06 Score=53.37 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHH
Q 031582 53 EEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELH 114 (157)
Q Consensus 53 ~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~ 114 (157)
...+.=.|..+|.+++|.|+-.|+..+.....+. +.=+...|+..|.|+||.|+..|+.
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~---e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPP---EHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTT---GGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhh---HHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3344444555555555555555555533322111 1224445555555555555555543
No 92
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.95 E-value=3e-05 Score=65.04 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=58.5
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCC-------CHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGL-------SLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
.++.-+|+.||++.+|.++..+|...|+.+|+.+ +++.+++++...|++++|+|++.+|+.||.+
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 5678899999999999999999999999998655 2447999999999999999999999999864
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.93 E-value=3.7e-05 Score=44.80 Aligned_cols=62 Identities=16% Similarity=0.329 Sum_probs=52.0
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhC-C-CCCHHHHHHHHHHhcCC----CCccccHHHHHHHHHh
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLG-V-GLSLADCQEIIASMDGD----GDGAVSFEDLQLIVNS 155 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 155 (157)
+..+|..+.. +.+.||.++|..+|.... . ..+.+.+..++..+.++ ..+.+++++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6788999976 789999999999998764 3 57899999999988544 4689999999999964
No 94
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00093 Score=53.16 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=55.2
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
+++.+|+.+|+-..|+++-..-+.+|-..+ ++...+..|....|.|+||+++-+||+-.|.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 378999999999999999999999888766 8888999999999999999999999987664
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.72 E-value=1.5e-05 Score=49.30 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=44.2
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHH
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQL 151 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 151 (157)
...+...|..+|.|++|.|+..|+..+...+. ..+.=+..++...|.|+||.||+.||..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 37788999999999999999999998776542 2333367899999999999999999975
No 96
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.70 E-value=0.00036 Score=45.79 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCC---CCCCccchHHHHh-----hchhh-----
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDT---NNDGLLSLEEFLE-----MNTKD----- 83 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~---~~~~~i~~~ef~~-----~~~~~----- 83 (157)
...+++=..-||+|++|.|.+-|-...++.+|+++--..+..++--..- ...+-+. ..+.. +.+..
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p-~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIP-DPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCC-CCceeEEeecccccccCCCc
Confidence 3456666778999999999999999999999999766554444322211 1111111 11111 11000
Q ss_pred ----hhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-----CCCCHHHHHHHHH-HhcCCCCccccHHHHHHHH
Q 031582 84 ----MELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-----VGLSLADCQEIIA-SMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 84 ----~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-----~~~~~~~~~~~~~-~~d~~~~g~i~~~eF~~~l 153 (157)
.+-....+++..+|..++..+.+.+|..|+.++++..- ..+.-..++-..- .+-.+++|.|..++...+.
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhc
Confidence 00011238899999999998999999999999999742 1233333333322 2235778999888766543
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.70 E-value=0.00023 Score=49.19 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred HHHHHHHHHccCCCCCCccchHHHHh-hchhhhhh-hhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 031582 53 EEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMEL-GSLGNLLKAAFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 53 ~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
...+..+|...|.+.++.|+-.|..+ ++....+. ....+.-..-|+..|+|+||.|+.+|+.--+.+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 44677889999999999999999888 55543221 112256677899999999999999999754443
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.61 E-value=0.00027 Score=53.68 Aligned_cols=65 Identities=28% Similarity=0.398 Sum_probs=56.8
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCC---CCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVG---LSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
..+...|...| +++|+|+..++...+...+.. ...+++++++...+.+.+|+|++++|+..+..+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 66888999999 999999999999999987632 357789999999999999999999999976654
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.54 E-value=0.00015 Score=32.38 Aligned_cols=27 Identities=41% Similarity=0.699 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH
Q 031582 20 LVETFRAFDSDNDGSITGAELSGIFNS 46 (157)
Q Consensus 20 ~~~~F~~~D~~~~g~i~~~e~~~~l~~ 46 (157)
++++|..+|.+++|+|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678899999999999999999888764
No 100
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.53 E-value=0.0014 Score=53.09 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=94.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHccCCCCCCccchHHHHh-hchhh
Q 031582 10 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASE-----EDVREMMRQGDTNNDGLLSLEEFLE-MNTKD 83 (157)
Q Consensus 10 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~ 83 (157)
+..++...++++..|+.+++...|.++.+++..+|..+|.+.-. .++..+....++...|.+++.+|.. |....
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 34567788999999999999999999999999999999988764 2444555556666678899999999 65554
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC-CCccccHHHHHHH
Q 031582 84 MELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGD-GDGAVSFEDLQLI 152 (157)
Q Consensus 84 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~eF~~~ 152 (157)
...+. ...+..+|..+-++.. .|..+||.+ ......-+-...++...-... -.|.|++..|...
T Consensus 819 e~l~~-~~r~i~s~~d~~ktk~-~lL~eEL~~---~~d~lv~d~~~~e~~~~~~~~~~~r~Ld~~~~s~~ 883 (890)
T KOG0035|consen 819 EDLDT-ELRAILAFEDWAKTKA-YLLLEELVR---ERDELVRDLDIQEMAAYDEDERLPRGLDQVKFSSS 883 (890)
T ss_pred hhhcH-HHHHHHHHHHHHcchh-HHHHHHHHh---hccHhhHHHHHHhhcccccCCcccccchHHHHHHH
Confidence 44444 4788889998876654 788888887 111111111222222222222 2455777777654
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.31 E-value=0.00088 Score=48.20 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHH
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNSV-GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKA 95 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~ 95 (157)
..+...|..||.+++|.++..+--..+.-+ |-..+...++-.|..++...||.+.-.+|.. +.....-. .-.+..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~---~l~v~~ 335 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE---VLRVPV 335 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc---eeeccc
Confidence 567889999999999999998876665443 5667888999999999999999888877666 33322211 234678
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhC
Q 031582 96 AFESLNLDGDDILTGAELHEVIENLG 121 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~~ 121 (157)
.|..++...+|.|+.++|+.+....+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 99999999999999999999987653
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.24 E-value=0.0005 Score=30.60 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=14.1
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHH
Q 031582 94 KAAFESLNLDGDDILTGAELHEVIE 118 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~~~el~~~l~ 118 (157)
..+|..+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555666655555554
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.99 E-value=0.0018 Score=37.59 Aligned_cols=62 Identities=24% Similarity=0.483 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHc-C-CCCCHHHHHHHHHccCCC----CCCccchHHHHh-hch
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFNSV-G-YRASEEDVREMMRQGDTN----NDGLLSLEEFLE-MNT 81 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~-~~~~~~~~~~l~~~~d~~----~~~~i~~~ef~~-~~~ 81 (157)
+|..+|..+.. +.+.|+.++|.+.|+.- + ...+.+.+..++..+.++ ..+.+++..|.. +..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 47788999965 78999999999999865 2 245788999999887544 367899999998 554
No 104
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0051 Score=37.65 Aligned_cols=57 Identities=28% Similarity=0.502 Sum_probs=41.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHc------CC---C-CCHHHHHHHH----HccCCCCCCccchHHHHh
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSV------GY---R-ASEEDVREMM----RQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~l~----~~~d~~~~~~i~~~ef~~ 78 (157)
..|+.+|.|++|.|+--|+.++++-. |. + +++.++..++ +.-|.|++|.|+|.||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 57899999999999999999988642 32 1 2344555444 445778889999998875
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=96.73 E-value=0.016 Score=45.79 Aligned_cols=88 Identities=15% Similarity=0.168 Sum_probs=60.3
Q ss_pred CCCccchHHHHhhchhhhhhh-hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhc------
Q 031582 67 NDGLLSLEEFLEMNTKDMELG-SLGNLLKAAFESLNLDGDDILTGAELHEVIENLG--VGLSLADCQEIIASMD------ 137 (157)
Q Consensus 67 ~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~d------ 137 (157)
+.|.++|++|..+........ ....++..+|..+..++ +.|+.++|..+|.... ...+.+.+..++..+-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 457899999977555443211 12378999999997544 7899999999999874 3356667777765431
Q ss_pred -CCCCccccHHHHHHHHHh
Q 031582 138 -GDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 138 -~~~~g~i~~~eF~~~l~~ 155 (157)
....+.+++++|..+|.+
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 112345899999999863
No 106
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.0082 Score=45.79 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 87 GSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 87 ~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
.+..+.+.+-|+-+-.|-.|.|+-.--++++.... ++-.++..|.+.-|.++||.|++.||+..+.-+
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 33457788999999999999999999999998655 777999999999999999999999999988654
No 107
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.47 E-value=0.096 Score=42.97 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=83.7
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc--CCCCCCccchH-----HHHhhchhhhhhhhHHHHHHHHHhhh
Q 031582 28 DSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQG--DTNNDGLLSLE-----EFLEMNTKDMELGSLGNLLKAAFESL 100 (157)
Q Consensus 28 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~--d~~~~~~i~~~-----ef~~~~~~~~~~~~~~~~~~~~f~~~ 100 (157)
-.+..|+|....+.+++..- -.++.++..+..+ ..+....|..+ .|..+....++ ..++..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHh
Confidence 35678888888877777542 1224444444433 22333345444 44443333333 37799999999
Q ss_pred cCCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHHhcCCC----CccccHHHHHHHHHh
Q 031582 101 NLDGDDILTGAELHEVIENL----------GVGLSLADCQEIIASMDGDG----DGAVSFEDLQLIVNS 155 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~l~~ 155 (157)
..++.-++|.++|..+++.- .+...+..+..+++.+..+. .|.++.+.|++++.+
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 99999999999999999863 24466788999999997654 789999999999875
No 108
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.012 Score=36.07 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=45.0
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHh------C----CCCCHHHHH----HHHHHhcCCCCccccHHHHHHHH
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENL------G----VGLSLADCQ----EIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~------~----~~~~~~~~~----~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
---.|++.|.|++|.++-=|+...+.-. | +..++.++. .++..-|.|.||.|+|-||.+..
T Consensus 69 qfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 69 QFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 3357899999999999999998877743 2 123455544 44455678999999999998753
No 109
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.016 Score=44.28 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=62.7
Q ss_pred cchhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 7 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
...-.+++++.+-.-.-|+..-+|.+|.|+-.--++++.+. ++.-.++..||...|.+.||.+++.||+. |..
T Consensus 220 d~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 220 DTPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred CCccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 33445678888888888999999999999999999999875 56678899999999999999999999999 654
No 110
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.39 E-value=0.025 Score=37.34 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 124 LSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 124 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
+.+..++++|..++....+.+++.|...++..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 45677899999998877888999999888763
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.32 E-value=0.052 Score=43.52 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=75.8
Q ss_pred CHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHH
Q 031582 52 SEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQE 131 (157)
Q Consensus 52 ~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~ 131 (157)
....+..+++..|.+++|.+++.+-..+.......-.. ..++..|+..+..++|.+...++..+....+... ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~-~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSE-SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhH-HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 45678899999999999999999988855544443332 7788899999999999999999999888776333 6666
Q ss_pred HHHHhcCCCCccccHHHHHHHHHh
Q 031582 132 IIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 132 ~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
+|..+..+ .+.++..++..++..
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHHHH
Confidence 77666544 667888887777754
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.01 E-value=0.017 Score=44.92 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=65.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhch
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~ 81 (157)
.+++.++...+..|..+|.++.|+++..+...+|...+.+.+...+..+++..+.+.+|.+...+|..+..
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 45889999999999999999999999999999999998999999999999999988899999999988444
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.014 Score=46.88 Aligned_cols=61 Identities=23% Similarity=0.449 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 16 HVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 16 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
..-..+++|+.+|+..+|+++-.+-+.+|...+ ++...+..|+..-|.|+||.++.+||+-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfil 253 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFIL 253 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHH
Confidence 345678999999999999999999999998765 4466788999999999999999999988
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.61 E-value=0.092 Score=34.31 Aligned_cols=56 Identities=14% Similarity=0.292 Sum_probs=43.7
Q ss_pred cCCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 101 NLDGDDILTGAELHEVIENLG---VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
-..+...++-..|..+++..+ ..++..+++.+|..+-.....+|+|++|...|..+
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 355668899999999999874 46899999999999765556679999999998754
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.50 E-value=0.037 Score=40.41 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHH
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFNSVG---YRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKA 95 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 95 (157)
+|+..|..+=.+.++......+...-..+. .+..+..+.=+|...|.|.++.++..|...+..-.. +.=++-
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn-----E~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN-----EACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCc-----hhHHHH
Confidence 444445444334444444444433322221 122333444445555555555555555444222111 122444
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 96 AFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
.|+..|...||.|+..|....+...
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred HHhhhcccccCccccchhhhhhccC
Confidence 4455555555555555555444443
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.44 E-value=0.035 Score=43.26 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
...+.-|..+|.|+.|.++..+...+++..+..++.+.+++.++..+.+..|.+.+.+|.+++..+
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 446678999999999999999999999998889999999999999999999999999999998765
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.03 Score=46.21 Aligned_cols=138 Identities=19% Similarity=0.289 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhh---
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELG--- 87 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~--- 87 (157)
++.++..+..++|....+. +|.++......+|... .++...+..++...|.+.+|.+++.+|.. +........
T Consensus 123 ~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 4667778888888888765 8888888888887654 44455677788888888888888888876 432111100
Q ss_pred --------------------------------------------------------------------------------
Q 031582 88 -------------------------------------------------------------------------------- 87 (157)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (157)
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence
Q ss_pred hHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 88 SLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 88 ~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.....+..+|...|.+.+|.|+-.+.+..+...| ++...+..+....|....|.|++.+|+-.+.
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 0123466789999999999999999999998866 8888888999999999999999998876554
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.30 E-value=0.071 Score=34.83 Aligned_cols=62 Identities=19% Similarity=0.409 Sum_probs=46.3
Q ss_pred HHHHHHHh---CCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 20 LVETFRAF---DSDNDGSITGAELSGIFNSVG---YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 20 ~~~~F~~~---D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
|+.+|..| -+.+...|+-..|..+++..+ -.++..++..+|..+...+...|+|++|+. +..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 34556666 345567899999999999864 458899999999998777777899999998 443
No 119
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.25 E-value=0.0062 Score=44.01 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 15 NHVLSLVETFRAFDSDNDGSITGAELSGIFNSV-GYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
++...++=.|..+|+|.++-|...|+..+=+-+ .......-...+++.+|.|+|..|++.|++.
T Consensus 330 DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~ 394 (421)
T KOG4578|consen 330 DEERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRG 394 (421)
T ss_pred ChhheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhh
Confidence 333344445666666666666665543322111 1222333445555555666666666666655
No 120
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.12 E-value=0.051 Score=46.72 Aligned_cols=59 Identities=15% Similarity=0.366 Sum_probs=50.2
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.-|+.||+||.|.|+..+|...+... .+.+..+++-++.....+.+...+|++|+.-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 35778899999999999999988742 467888899899988888889999999998654
No 121
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.70 E-value=0.12 Score=37.94 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
..+-.+|+.+|.|.||.++..||+.+-.. -.+.=++.+|..-|..+||.|+-.||+..+.
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 66778888888888888888888766532 2333467788888888888888888877654
No 122
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.67 E-value=0.075 Score=41.95 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=47.1
Q ss_pred cchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHH
Q 031582 71 LSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFE 147 (157)
Q Consensus 71 i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 147 (157)
++|..|.. +....+.+ ....-+..+|+.+|.+++|.|+..++..-+..+...-.-+.+..+++.++.+.+ ....+
T Consensus 535 i~~~~f~~~f~~l~pw~-~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWA-VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchh-HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 45555555 33333333 333567788888888888888888888888776533444556667777776665 44433
No 123
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.39 E-value=0.57 Score=27.66 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-------CC----CCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENL-------GV----GLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
.++++.+|+.+ .|.+|.++...|..+|... |+ .-.+.-+...|... .....|+.++|+..|+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 37899999999 5788999999999888863 21 12555677777765 34567999999998863
No 124
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.31 E-value=0.15 Score=40.04 Aligned_cols=87 Identities=26% Similarity=0.348 Sum_probs=59.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHccCCCCCCccchHHHHh-hchhhhh
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRA----SEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDME 85 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~ 85 (157)
-+++.-++.+..+|..||.|++|.++..|+..++...+-.+ ..++. .-.+..|.+++.-|+. +.... .
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL~T-l 380 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSLMT-L 380 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc------ceecccceeehhhHHHHHHHHh-h
Confidence 35777899999999999999999999999999998875444 11111 1123678899999999 43322 2
Q ss_pred hhhHHHHHHHHHhhhcCCC
Q 031582 86 LGSLGNLLKAAFESLNLDG 104 (157)
Q Consensus 86 ~~~~~~~~~~~f~~~D~~~ 104 (157)
.+....--..+|..|..+.
T Consensus 381 ld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 381 LDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred ccHHHHHHHHHhcCCcccc
Confidence 2222244455666666653
No 125
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.16 E-value=0.088 Score=41.60 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHc-CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHH
Q 031582 35 ITGAELSGIFNSV-GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAE 112 (157)
Q Consensus 35 i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e 112 (157)
|+...+..+++.+ ....+.--+..+|+..|.+++|.++|.+++. +.... ... ..+++..+|+++|++++ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~-~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGD-ALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhh-HHHHHHHHHhhccCCcc-cccccc
Confidence 4444455554443 2334555778999999999999999999999 65532 222 23889999999999999 888888
Q ss_pred H
Q 031582 113 L 113 (157)
Q Consensus 113 l 113 (157)
.
T Consensus 612 ~ 612 (671)
T KOG4347|consen 612 V 612 (671)
T ss_pred c
Confidence 8
No 126
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.91 E-value=0.11 Score=44.79 Aligned_cols=58 Identities=14% Similarity=0.459 Sum_probs=48.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 23 TFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 23 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
-|+.+|+||.|.|+..+|.+++..- ...+..+++-++.....+.+..++|.+|+. +..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 3677899999999999999998643 446777888888888888888999999998 654
No 127
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.84 E-value=0.14 Score=37.13 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHhhhcCCCCCccCHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHHhcCCCCccccHHHHHHH
Q 031582 94 KAAFESLNLDGDDILTGAELHEVIENL-----GVGLSLAD-----------CQEIIASMDGDGDGAVSFEDLQLI 152 (157)
Q Consensus 94 ~~~f~~~D~~~~g~I~~~el~~~l~~~-----~~~~~~~~-----------~~~~~~~~d~~~~g~i~~~eF~~~ 152 (157)
...|.+.|.|+||.++..|+..++..- .....+.+ ...+++..|.|.|..|++++|+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 346777889999999999999888752 22222222 234667789999999999999864
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=93.00 E-value=0.55 Score=37.32 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcC-CCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLG--VGLSLADCQEIIASMDG-DGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~l~~ 155 (157)
.++..+|..+.. .+.++.++|..+|.... ...+.+.+..+++.+.. .+.+.++++.|..||.+
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 578888888864 47899999999998864 23567778888887642 23567999999998864
No 129
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.59 E-value=0.11 Score=37.80 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVG-LSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
.++..|..+|+|.++.|...|++.+-+-+-.. -...=...+++.-|.|+|-+|++.|+...|
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 34555555566666666655554443332211 112223445555555666566666555444
No 130
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.33 E-value=0.19 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCC-------CCCCccchHHHHh
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDT-------NNDGLLSLEEFLE 78 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~ 78 (157)
+++.+.|+.+ .+++++||..+|+..|.. +.++-+...+.. ...|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5677889988 578899999999998632 222333333322 1236689999887
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=92.14 E-value=1.4 Score=35.19 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=56.8
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHccCCCCCCccchHHHHhhchh-hhhhhhHHHHHHHHHhhh-------
Q 031582 31 NDGSITGAELSGIFNSVGY--RASEEDVREMMRQGDTNNDGLLSLEEFLEMNTK-DMELGSLGNLLKAAFESL------- 100 (157)
Q Consensus 31 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~~~~~~~~f~~~------- 100 (157)
+.|.++.++|..+.+.+.. ....+++..+|..+.. +.+.++.++|..|... ........+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888777642 3368899999999964 4467999999994433 322212123344443322
Q ss_pred cCCCCCccCHHHHHHHHH
Q 031582 101 NLDGDDILTGAELHEVIE 118 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~ 118 (157)
...+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 122345689999988886
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=92.02 E-value=1.1 Score=26.94 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=54.4
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCcc
Q 031582 32 DGSITGAELSGIFNSVG--YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDIL 108 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I 108 (157)
||.++..|...+-..+. +.++..+...++..+........++.+|.. +.... .......-+..+|.+.- .||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF-DYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH--hcCCC
Confidence 78899998766654321 356677888888777666666788999988 65543 22233355666676664 35788
Q ss_pred CHHHHHHH
Q 031582 109 TGAELHEV 116 (157)
Q Consensus 109 ~~~el~~~ 116 (157)
+..|-.-+
T Consensus 90 ~~~E~~~l 97 (104)
T cd07313 90 DEYEEHLI 97 (104)
T ss_pred CHHHHHHH
Confidence 88776643
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=91.77 E-value=1.2 Score=35.40 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=41.9
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-C-CCCHHHHHHHHHHhcCC----CCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLG-V-GLSLADCQEIIASMDGD----GDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~l~~ 155 (157)
.++..+|..+..+ +.++.++|..+|.... . ..+.+.+..++..+... ..|.+++++|..+|.+
T Consensus 24 ~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 24 VSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 6677777777643 5788888888887763 2 24455677777776432 2356888888887753
No 134
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.75 E-value=0.15 Score=42.24 Aligned_cols=66 Identities=30% Similarity=0.405 Sum_probs=59.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
..++.....+.++|...|++++|+|+-.+...++.. ..+....+..++...+..+.|.+++++|.-
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFAL 341 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccch
Confidence 567888899999999999999999999999999877 556677899999999999999999999887
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.74 E-value=0.45 Score=34.56 Aligned_cols=57 Identities=39% Similarity=0.650 Sum_probs=41.7
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHH-c--CCCCC--HHHH-----------HHHHHccCCCCCCccchHHHHh
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNS-V--GYRAS--EEDV-----------REMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~-~--~~~~~--~~~~-----------~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
..|..+|.|++|.++..++..++.. + -+.+. +.++ +.++..+|.|.+..|+.++|+.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~ 320 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN 320 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh
Confidence 3567788999999999999998864 2 12222 1122 2456778999999999999998
No 136
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=90.64 E-value=0.79 Score=29.38 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCC-------CCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCC
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGDT-------NNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDG 104 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~-------~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 104 (157)
-+.|++.||..+-.-+.+ +...+++++..+.. +..+.|+|+.|..++....+.+.+.+-...+|..|-...
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 457788887777554422 45566666666632 335679999998866555554455566777777775443
No 137
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.28 E-value=2.1 Score=34.26 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-C--CCCHHHHHHHHHHhc-------CCCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLG-V--GLSLADCQEIIASMD-------GDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~--~~~~~~~~~~~~~~d-------~~~~g~i~~~eF~~~l~~ 155 (157)
.++..+|..+..++ +.++.++|..+|.... . ..+.+.+..++..+- .-..+.++++.|..||.+
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 78999999996554 8999999999999875 2 346666777776442 112446999999999864
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=89.81 E-value=1.9 Score=27.70 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=38.1
Q ss_pred CccchHHHHhhchhhhhhhhHHHHHHHHHhhhcC-------CCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhc
Q 031582 69 GLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNL-------DGDDILTGAELHEVIENL-GVGLSLADCQEIIASMD 137 (157)
Q Consensus 69 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~-------~~~g~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d 137 (157)
+.++..||..+......-. .++..+...|.. +..+.|+.+.|+.+|+.+ ...++++-+..+|..|-
T Consensus 6 ~~lsp~eF~qLq~y~eys~---kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYST---KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5688888888655332211 334444444422 235699999999999986 55688888998888774
No 139
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=89.53 E-value=6 Score=28.42 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=58.0
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHH-HHHHHhhhcCCCC
Q 031582 30 DNDGSITGAELSGIFNSV--GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNL-LKAAFESLNLDGD 105 (157)
Q Consensus 30 ~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~-~~~~f~~~D~~~~ 105 (157)
.-||.++..|+. +.+.+ .+.++.+.-..+...+........++.+|+. +......+...... +..+|.+.= .|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hc
Confidence 348999999987 33332 2445566533333334333344588999999 76655333222111 244454443 46
Q ss_pred CccCHHHHHHHHHHhC-CCCCHHHHHHHHHH
Q 031582 106 DILTGAELHEVIENLG-VGLSLADCQEIIAS 135 (157)
Q Consensus 106 g~I~~~el~~~l~~~~-~~~~~~~~~~~~~~ 135 (157)
|.++..|-.-+.+-.. ..+++.++..+...
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8899888543333221 34888887777665
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=89.51 E-value=1.6 Score=24.32 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 110 GAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 110 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
.+++..++...|..++..++..++..-+..+--..+-+.+..+|.++
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 34677777777788888888888877554444456666666666654
No 141
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=89.12 E-value=3 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=27.4
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Q 031582 106 DILTGAELHEVIENLGVGLSLADCQEIIASMDGD 139 (157)
Q Consensus 106 g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 139 (157)
..||..||..+.+.++.++|.++++.+++.+-.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4688888888888888888888888888876433
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.81 E-value=0.49 Score=26.54 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 123 GLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 123 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
.++......+...++.=+.++|+-++|++.++.+
T Consensus 21 ~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3455555555555554455566666666655543
No 143
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.61 E-value=0.59 Score=26.14 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc----CC---CCccccHHHHHH
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD----GD---GDGAVSFEDLQL 151 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d----~~---~~g~i~~~eF~~ 151 (157)
+++..+|+.+ .++.+.||.+||++.|.. +.++-++..+. .+ ..|.++|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 7899999999 667899999999988753 22233333332 11 236788888864
No 144
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.95 E-value=3.9 Score=24.16 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH-------cC----CCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhh
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNS-------VG----YRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKD 83 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-------~~----~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~ 83 (157)
++.+-+|..+ .|++|.++...|..+|+. +| +...+..++..|.... ....|+.++|+. +...+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 5677889988 488999999999988874 22 2225666666676652 455699999999 66543
No 145
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=87.47 E-value=3.4 Score=34.38 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=83.0
Q ss_pred cHHHHHHH-HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHccCCCCCCccchHHHHhhch-hhhhhhh-
Q 031582 13 TLNHVLSL-VETFRAFDSDNDGSITGAELSGIFNSVGYRASEE-DVREMMRQGDTNNDGLLSLEEFLEMNT-KDMELGS- 88 (157)
Q Consensus 13 ~~~~~~~~-~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~l~~~~d~~~~~~i~~~ef~~~~~-~~~~~~~- 88 (157)
++.+|..| ++.+-..|......|+..++..+|....+.++.. .+..-+..... ..+.++|.+|..+.. ...+...
T Consensus 138 ~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 138 TPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred ChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchh
Confidence 45566544 6667777877777899999999998776666543 23233433333 345699999998433 3322211
Q ss_pred HHHHHHHHHh--hhcCCCCCccCHHHHHHHHHHhC-CCCCHH--HHHHHHHHhcCC-----CCccccHHHHHHHHH
Q 031582 89 LGNLLKAAFE--SLNLDGDDILTGAELHEVIENLG-VGLSLA--DCQEIIASMDGD-----GDGAVSFEDLQLIVN 154 (157)
Q Consensus 89 ~~~~~~~~f~--~~D~~~~g~I~~~el~~~l~~~~-~~~~~~--~~~~~~~~~d~~-----~~g~i~~~eF~~~l~ 154 (157)
........|- .-+...--.|+..||.++|.... ..+..+ .+.+++..|-.| ....+.+.||+.+|=
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 1111112221 11222336899999999998653 444433 344555544211 245799999999874
No 146
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.33 E-value=0.75 Score=28.39 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 50 RASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 50 ~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
.+++++++.++..+-.|..|.|.|.+|+. |..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 36889999999999999999999999999 765
No 147
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=86.21 E-value=0.45 Score=32.28 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred CCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 031582 67 NDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVI 117 (157)
Q Consensus 67 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l 117 (157)
.+|++|-.|+..+.....+. +.=....|.-.|.|+||.|+.+|+...+
T Consensus 201 ~d~~~sh~el~pl~ap~ipm---e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPLIPM---EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCcccH---HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 46677777766654433322 2445666777777777777777765544
No 148
>PLN02223 phosphoinositide phospholipase C
Probab=86.09 E-value=4.5 Score=31.99 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHH---HHh-C-CCCCHHHHHHHHHHhcCC--------CCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVI---ENL-G-VGLSLADCQEIIASMDGD--------GDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~l~~ 155 (157)
..+..+|..+. .+.|.++.+.+.+++ ... | ...+.++++.++..+-.. +.+.+++++|..+|.+
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 77899999995 667999999999998 443 3 356677777777654221 2356999999999864
No 149
>PRK00523 hypothetical protein; Provisional
Probab=85.94 E-value=2.6 Score=23.66 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=34.4
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 21 VETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 21 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
++.|..+=+ .+-.|+.+.++..+..+|.+|+++.++.+.+...
T Consensus 27 rk~~~k~l~-~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 27 KKMFKKQIR-ENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHHHH-HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 344555532 3668999999999999999999999999988763
No 150
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.79 E-value=3.3 Score=23.07 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 21 VETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 21 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
++.+...=+ ++..|+.+.++..+..+|.++++..++.+++.+.
T Consensus 26 rk~~~k~lk-~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQLK-DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHh-hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 444555543 3678999999999999999999999999988763
No 151
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=85.50 E-value=3.5 Score=34.46 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCH-HH-HHHHH---HHhcCCCCccccHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSL-AD-CQEII---ASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~-~~-~~~~~---~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
..+++..|+.++....|..+.+++.+.+..+|...-+ +. +.+++ ...|.+..|.+++.+|...|..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 3779999999999999999999999999999866543 22 33333 4445566789999999998864
No 152
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=85.04 E-value=3.3 Score=20.85 Aligned_cols=32 Identities=9% Similarity=0.446 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH
Q 031582 15 NHVLSLVETFRAFDS--DNDGSITGAELSGIFNS 46 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~--~~~g~i~~~e~~~~l~~ 46 (157)
..+..+-.+|..|.. ....+++..||..++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 346677888999862 34678999999999864
No 153
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=84.87 E-value=6.8 Score=23.95 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=39.9
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
+..+|.+++.-+....+..++..+|...|....++.+..++..+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 456788888888889999999999999999999999999999874
No 154
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=1.3 Score=33.13 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH-HHccCCCCCCccchHHHHh-hchh
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREM-MRQGDTNNDGLLSLEEFLE-MNTK 82 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l-~~~~d~~~~~~i~~~ef~~-~~~~ 82 (157)
-..++++|..+|+.+.|+|+..-+..+++.++...++...-.+ -..+++..-|.|-..+|+. +...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~ 375 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPT 375 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCc
Confidence 4678999999999999999999999999998866665544444 3456777777676677777 5543
No 155
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.67 E-value=2.8 Score=34.08 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=55.3
Q ss_pred CCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh---C-----CCCCHHHHHHHHHHhcCC
Q 031582 68 DGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL---G-----VGLSLADCQEIIASMDGD 139 (157)
Q Consensus 68 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~---~-----~~~~~~~~~~~~~~~d~~ 139 (157)
++ +++++|. +. ....+..++..|.++|. ++|.++.+++..++... + ...+.+....+++..|.+
T Consensus 2 ~~-~~~~~~~-~~-----~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK-IT-----DCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc-cc-----CCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 7788877 11 12224788899999997 88999999998877753 1 233444566677778887
Q ss_pred CCccccHHHHHHHHHh
Q 031582 140 GDGAVSFEDLQLIVNS 155 (157)
Q Consensus 140 ~~g~i~~~eF~~~l~~ 155 (157)
..|.+.++++..++..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 7778877777666553
No 156
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=83.59 E-value=4.1 Score=26.49 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCC----CCCCc-ccHHHHHHHHHHc----CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchh---h
Q 031582 17 VLSLVETFRAFDS----DNDGS-ITGAELSGIFNSV----GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTK---D 83 (157)
Q Consensus 17 ~~~~~~~F~~~D~----~~~g~-i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~---~ 83 (157)
++.+.+-|+.|.. .-+|. |+-..+..++... |-.++..+....|..+....-..++|++|.. +... .
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R 90 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKR 90 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhh
Confidence 3445566666643 33454 7777888888765 3556666777777777666667899999965 3221 1
Q ss_pred hhhhhHHHHHHHHHhhhcC
Q 031582 84 MELGSLGNLLKAAFESLNL 102 (157)
Q Consensus 84 ~~~~~~~~~~~~~f~~~D~ 102 (157)
.......+.+..+.+++..
T Consensus 91 ~k~Ks~ee~l~~I~~llag 109 (180)
T KOG4070|consen 91 FKGKSKEEALDAICQLLAG 109 (180)
T ss_pred hcCCCHHHHHHHHHHHHhc
Confidence 1112334566666666644
No 157
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.18 E-value=0.79 Score=40.66 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=52.1
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSV----GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
.+++.++++++++|..+|++..|+|...++...++.+ ++....+. +.+...+....++.|++.+-+. +..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 7899999999999999999999999999999999875 33322222 3333344455677888888666 443
No 158
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=82.72 E-value=3.7 Score=24.63 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcC--C-CCccccHHHHHHHHHhc
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDG--D-GDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~--~-~~g~i~~~eF~~~l~~~ 156 (157)
..+..-|..+.. +|.++.++|-..+. -.-+.+-+.++|..+.. + ..+.|+.+|+..++.+|
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 566667777765 67777777777663 22344455555554432 1 14567777777777654
No 159
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=82.49 E-value=3.6 Score=22.60 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
+.|..+= ..+--|+.+.++..+..+|.++++..++.+.+.+.
T Consensus 20 ~~~~k~l-~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 20 KYMEKQL-KENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred HHHHHHH-HHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3444432 23567999999999999999999999999988764
No 160
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.08 E-value=3.2 Score=17.36 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=7.8
Q ss_pred cCCCCCccCHHHHHH
Q 031582 101 NLDGDDILTGAELHE 115 (157)
Q Consensus 101 D~~~~g~I~~~el~~ 115 (157)
|.|+||.|+.-++.-
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 345566666555543
No 161
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.05 E-value=18 Score=25.93 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=65.8
Q ss_pred HHHHHHHHHHh-CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhh---------
Q 031582 17 VLSLVETFRAF-DSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDME--------- 85 (157)
Q Consensus 17 ~~~~~~~F~~~-D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~--------- 85 (157)
...+.+.|+.+ |+..+..|..+-+..+++.+|+.+..-..--+-..+.+..-+.++-++|+. +...-..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l 142 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRL 142 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHH
Confidence 44566667666 555557899999999999999998765555555566677788899999888 5432211
Q ss_pred ---------hhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 86 ---------LGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 86 ---------~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
........+.+|......+.-.++.+.-..++.-+
T Consensus 143 ~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll 186 (260)
T KOG3077|consen 143 DFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLL 186 (260)
T ss_pred HHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHH
Confidence 00011335556665555555666665555544443
No 162
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=79.93 E-value=4.2 Score=25.67 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCc
Q 031582 31 NDGSITGAELSGIFNSV--GYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDI 107 (157)
Q Consensus 31 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 107 (157)
-||.++..|...+...+ ...++......+...++.-.....++.+++. +..... ......-+..++...-.| |.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~r~~ll~~l~~ia~AD--G~ 112 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLS-PEEREDLLRMLIAIAYAD--GE 112 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS---HHHHHHHHHHHHHHCTCT--TC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhc-hHHHHHHHHHHHHHHhcC--CC
Confidence 38999999988776654 3344455666666666544444688888888 655433 222335677777777665 55
Q ss_pred cCHHHH
Q 031582 108 LTGAEL 113 (157)
Q Consensus 108 I~~~el 113 (157)
++..|-
T Consensus 113 ~~~~E~ 118 (140)
T PF05099_consen 113 ISPEEQ 118 (140)
T ss_dssp -SCCHH
T ss_pred CCHHHH
Confidence 554443
No 163
>PRK01844 hypothetical protein; Provisional
Probab=79.37 E-value=5.9 Score=22.26 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=34.2
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 21 VETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 21 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
++.|..+=+ .+-.|+.+.++..+..+|.+|+++.++.+.+...
T Consensus 26 rk~~~k~lk-~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 26 RKYMMNYLQ-KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 344554432 3568999999999999999999999999988763
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.03 E-value=5.8 Score=23.65 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCCccchHHHHhhchhhhhh-hhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc--CCCCcc
Q 031582 67 NDGLLSLEEFLEMNTKDMEL-GSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD--GDGDGA 143 (157)
Q Consensus 67 ~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d--~~~~g~ 143 (157)
-||.++-.|-..+....... +-.......+...+........+..++...+.... +.+....++..+- ..-||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~l~~L~~vA~ADG~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF---DYEERLELVEALWEVAYADGE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCC
Confidence 36677777755544332221 11123334444444443445556666666555432 4444444443221 133555
Q ss_pred ccHHH
Q 031582 144 VSFED 148 (157)
Q Consensus 144 i~~~e 148 (157)
++-.|
T Consensus 89 ~~~~E 93 (104)
T cd07313 89 LDEYE 93 (104)
T ss_pred CCHHH
Confidence 65544
No 165
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=77.79 E-value=5.3 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHc
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQ 62 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 62 (157)
...+.+-|..+.. +|+|....|..++ |.+-+++-...+|..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdA 69 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDA 69 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHH
Confidence 4455556666654 6677777666655 344555555555543
No 166
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.66 E-value=15 Score=23.18 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=20.7
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
--+..++.+||+.++|.|+.-.++-.+..
T Consensus 97 L~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 97 LLLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 34677889999999999999888877654
No 167
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.38 E-value=24 Score=27.27 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCCcccHHHHHHHHHHc---C-CCCCHHHHHHHHHccCCCCCCccchHHHHhhch-hhhhhhhHHHHHHHHHhhhcCCC
Q 031582 30 DNDGSITGAELSGIFNSV---G-YRASEEDVREMMRQGDTNNDGLLSLEEFLEMNT-KDMELGSLGNLLKAAFESLNLDG 104 (157)
Q Consensus 30 ~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~-~~~~~~~~~~~~~~~f~~~D~~~ 104 (157)
.|+...+..||+.+.... + -++.-+-+..|-+.+|.+.+|.|+.+|=-.|.. -....+.. .+-...|-. .
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~-~kr~~~fH~----d 114 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDST-RKRSEKFHG----D 114 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccch-hhhhhhccC----C
Confidence 566677777776664322 2 445667888999999999999999987333222 11111211 222234443 4
Q ss_pred CCccCHHHHHHHHHHhC-CCCCHHHHH
Q 031582 105 DDILTGAELHEVIENLG-VGLSLADCQ 130 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~~-~~~~~~~~~ 130 (157)
|..|+.+++........ ..+|.+++-
T Consensus 115 D~~ItVedLWeaW~~Sev~nWT~e~tv 141 (575)
T KOG4403|consen 115 DKHITVEDLWEAWKESEVHNWTNERTV 141 (575)
T ss_pred ccceeHHHHHHHHHhhhhhcchHHHHH
Confidence 67999999998887754 567776643
No 168
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=76.88 E-value=22 Score=24.70 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=18.7
Q ss_pred CccCHHHHHHHHHHh--C-CCCCHHHHHHHHHHhcC
Q 031582 106 DILTGAELHEVIENL--G-VGLSLADCQEIIASMDG 138 (157)
Q Consensus 106 g~I~~~el~~~l~~~--~-~~~~~~~~~~~~~~~d~ 138 (157)
|.|+..|+...+.+. | ..++++++...++.+..
T Consensus 112 Gii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~ 147 (223)
T PF04157_consen 112 GIISLSDLYCRYNRARGGSELISPEDILRACKLLEV 147 (223)
T ss_dssp SEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCC
T ss_pred CEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHH
Confidence 666666666666653 2 34566666666666543
No 169
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=76.70 E-value=15 Score=22.72 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=38.8
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
++..+|.+...-++..+|.+++..++...|....+..+..+++.+.
T Consensus 4 kyvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 4 KYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3556777777777788999999999999999999988888888874
No 170
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=76.64 E-value=12 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=14.4
Q ss_pred HccCCCCCCccchHHHHhhch
Q 031582 61 RQGDTNNDGLLSLEEFLEMNT 81 (157)
Q Consensus 61 ~~~d~~~~~~i~~~ef~~~~~ 81 (157)
+.+|...+.+|+.++...+..
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 346777777888888777443
No 171
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=76.18 E-value=6.5 Score=24.64 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHccC
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSV-GYRASEEDVREMMRQGD 64 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~d 64 (157)
...+.++|+.|- .+.|+.+.+..++... |..++..++.-++..+-
T Consensus 36 ~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 36 LDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 467888888887 5688999999988876 57888888888877764
No 172
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.31 E-value=19 Score=23.23 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=60.2
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHh
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNS--VGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFE 98 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~--~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~ 98 (157)
-+|..+.. +|.++..|....... -.+..+.+.+..++.....-+...+++..|.. +......... .+-+..+|.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R-~eli~~mwe 110 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQR-LELIGLMWE 110 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHH
Confidence 66777755 677887775544332 24677888999999888777778899999998 6544333222 133444454
Q ss_pred hhcCCCCCccCHHHHHHHHHH
Q 031582 99 SLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 99 ~~D~~~~g~I~~~el~~~l~~ 119 (157)
.. ..||.++..|-.-+.+.
T Consensus 111 Ia--~ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 111 IA--YADGELDESEDHVIWRV 129 (148)
T ss_pred HH--HccccccHHHHHHHHHH
Confidence 43 35688888876655443
No 173
>PLN02228 Phosphoinositide phospholipase C
Probab=75.08 E-value=13 Score=29.73 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHccC
Q 031582 19 SLVETFRAFDSDNDGSITGAELSGIFNSVG--YRASEEDVREMMRQGD 64 (157)
Q Consensus 19 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~d 64 (157)
++..+|..+.. ++.++.++|..+|+... ...+...+..++..+.
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~ 70 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVK 70 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhc
Confidence 34444555542 23566666666655431 1123444555555553
No 174
>PLN02230 phosphoinositide phospholipase C 4
Probab=75.04 E-value=17 Score=29.37 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHccC-------CCCCCccchHHHHh-hch
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNSVGY---RASEEDVREMMRQGD-------TNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d-------~~~~~~i~~~ef~~-~~~ 81 (157)
.+++.+|..+..+ .+.++.++|..+|+.-.- ..+...+..++..+- .-+.+.++++.|.. +..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 5778889999644 489999999999987542 235666677765431 11344699999999 554
No 175
>PLN02222 phosphoinositide phospholipase C 2
Probab=74.30 E-value=17 Score=29.34 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHcC-C-CCCHHHHHHHHHccCC-CCCCccchHHHHh-hch
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIFNSVG-Y-RASEEDVREMMRQGDT-NNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~l~~~~d~-~~~~~i~~~ef~~-~~~ 81 (157)
.++..+|..+.. ++.++.++|..+|+... . ..+.+.+..++..+.. ...+.++++.|.. +..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 477788888864 47999999999998753 2 3467788888887532 2355699999999 554
No 176
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=72.37 E-value=20 Score=22.04 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=37.6
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
+..+|.++...++..+|.+++..++...|..........+++.+.
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 445677777777789999999999999998888888888888774
No 177
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=72.06 E-value=14 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 105 DDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
.|.||++|-...++.+....++..++.+++.++ ||-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 477777777777776555556666777777775 6667776654
No 178
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.26 E-value=4.2 Score=30.54 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH-HHHHHHHhcCCCCccccHH
Q 031582 89 LGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLAD-CQEIIASMDGDGDGAVSFE 147 (157)
Q Consensus 89 ~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ 147 (157)
..+.++++|..+|+.+.|+|+-+-++.++.......++.. +..+=+.+|+..-|-|-..
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~ 366 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLE 366 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEec
Confidence 3578999999999999999999999999998774444433 2222233454444444333
No 179
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=67.28 E-value=16 Score=24.57 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=29.1
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Q 031582 101 NLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDG 138 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 138 (157)
..|.+|+++.+++.+.+...+..++.+.+.+++..-|+
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 35678999999999888765566788888888876554
No 180
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=66.88 E-value=14 Score=20.23 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=25.4
Q ss_pred hhhcCCCCCccCHHHHHHHHHHh----------CCCCCHHHHHHHHHH
Q 031582 98 ESLNLDGDDILTGAELHEVIENL----------GVGLSLADCQEIIAS 135 (157)
Q Consensus 98 ~~~D~~~~g~I~~~el~~~l~~~----------~~~~~~~~~~~~~~~ 135 (157)
++||...+.+|+.+++.++...- |..+|..-+..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 46788888888888888888751 445555555444443
No 181
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=66.64 E-value=41 Score=23.39 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHccCCCCCCccchHHHHh--hchhhhhhhhHH
Q 031582 16 HVLSLVETFRAFDSDNDGSITGAELSGIFNSVG---YRASEEDVREMMRQGDTNNDGLLSLEEFLE--MNTKDMELGSLG 90 (157)
Q Consensus 16 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~--~~~~~~~~~~~~ 90 (157)
--.++-++....-..+.|.|+..|+...++... -.+++.++...+..+..=+.| +....|-. ..-...+.....
T Consensus 95 La~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~ 173 (223)
T PF04157_consen 95 LAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELS 173 (223)
T ss_dssp HHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-
T ss_pred HHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhh
Confidence 345666677766667778999999999998753 356899999999999766666 76666663 111112212222
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASM 136 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 136 (157)
.....+.........|.+|..++..-+. ++...+.+.+..+
T Consensus 174 ~~~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 174 KDQSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 4445555555245569999999987774 7877777777654
No 182
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=66.60 E-value=7.8 Score=22.29 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCC
Q 031582 15 NHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDT 65 (157)
Q Consensus 15 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~ 65 (157)
.....++++...- ...|+||..++..+|.. ..++...+..++..+..
T Consensus 4 ~~~~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 4 QYEEAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 3445566655544 24788999999888864 34667788888877743
No 183
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=66.31 E-value=25 Score=20.84 Aligned_cols=80 Identities=25% Similarity=0.301 Sum_probs=43.2
Q ss_pred CCcccHHHHHHH---HHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhh-hhhhhHHHHHHHHHhhhcCCCCC
Q 031582 32 DGSITGAELSGI---FNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKD-MELGSLGNLLKAAFESLNLDGDD 106 (157)
Q Consensus 32 ~g~i~~~e~~~~---l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~-~~~~~~~~~~~~~f~~~D~~~~g 106 (157)
||.++..|...+ +..+. .+......+...+........++.+|.. +.... ..+.....-+..+|.+.-. ||
T Consensus 13 DG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG 88 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DG 88 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cC
Confidence 788888876555 44432 3333333343333222222267788877 55433 1222333556666666644 57
Q ss_pred ccCHHHHHH
Q 031582 107 ILTGAELHE 115 (157)
Q Consensus 107 ~I~~~el~~ 115 (157)
.++..|-.-
T Consensus 89 ~~~~~E~~~ 97 (106)
T cd07316 89 ELSEAEREL 97 (106)
T ss_pred CCCHHHHHH
Confidence 888877654
No 184
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=65.94 E-value=17 Score=18.79 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.8
Q ss_pred hhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHc
Q 031582 10 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQ 62 (157)
Q Consensus 10 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 62 (157)
...++.++..+...|.. +.+.+..++..+...+| ++...+...|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 35678889999999987 55899999999988865 556777777653
No 185
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=65.91 E-value=17 Score=28.48 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHH
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLG 90 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~ 90 (157)
+..+..+..-.+|+.+-+.+...|+..++..++..+|......+--..|+.-+-. ...+.|-.++. ....... .
T Consensus 479 l~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel~D----~ 553 (612)
T COG5069 479 LVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSELVD----Y 553 (612)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHhhhhcC----h
Confidence 4556667777888888777778899999999999998877654433334333211 12467777776 4443332 3
Q ss_pred HHHHHHHhhhcC
Q 031582 91 NLLKAAFESLNL 102 (157)
Q Consensus 91 ~~~~~~f~~~D~ 102 (157)
+.+...|..++.
T Consensus 554 d~v~~~~~~f~d 565 (612)
T COG5069 554 DLVTRGFTEFDD 565 (612)
T ss_pred hhhhhhHHHHHH
Confidence 556666666643
No 186
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=65.20 E-value=16 Score=19.80 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 63 (157)
+-.+|.+|+...+..++-.++..++-.++..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34688889999999888888888888888665
No 187
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=65.12 E-value=22 Score=19.78 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHccCCC
Q 031582 35 ITGAELSGIFNSVGYRASEEDVREMMRQGDTN 66 (157)
Q Consensus 35 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 66 (157)
++..++..++...|+.++++++..+++.=+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 45567888888888999999999888775543
No 188
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=63.38 E-value=33 Score=21.23 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=36.2
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
+..+|.+.-.-++..+|.+++..++...|.......+..++..+.
T Consensus 3 yvaAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 3 VVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 344566666667778999999999999998888888888888774
No 189
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.35 E-value=20 Score=23.19 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENL--GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.+|.+... ||.++..|...+..-+ ...++.+++..++.....-+...+++..|...|.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666553 4677777766544433 2456777777766655433344566666665554
No 190
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=63.22 E-value=28 Score=20.35 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHH
Q 031582 33 GSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEE 75 (157)
Q Consensus 33 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~e 75 (157)
..||..||..+.+..|++.++++++.+...+..+.-...+-++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3689999999999999999999999999888544433344444
No 191
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=62.64 E-value=5.6 Score=27.21 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=33.9
Q ss_pred HhhhcC-CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 97 FESLNL-DGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 97 f~~~D~-~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
|-.+|. ..||+++-.|+.-+-..+- ..+.=+..+|..-|.|.||.|++.+|...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 444443 4678888888765543321 222334567777888888888888876543
No 192
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=61.66 E-value=18 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=24.0
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Q 031582 101 NLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDG 138 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 138 (157)
..+.+|+++.+++.+.+..-+..++.+++.+++..-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 45778999999999888887767888888888876543
No 193
>PF13551 HTH_29: Winged helix-turn helix
Probab=61.34 E-value=32 Score=20.41 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=37.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHHHcc
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIF--NSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l--~~~~~~~~~~~~~~l~~~~ 63 (157)
+++++.+.+.+.+...-.++.+..+...+...+ ...|+.++...+..+++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 678888888888876655544578888888854 3457888888888877653
No 194
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.76 E-value=32 Score=26.61 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCCCccchHHHHhhchhh-hhh--hhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHHhcCCCC
Q 031582 66 NNDGLLSLEEFLEMNTKD-MEL--GSLGNLLKAAFESLNLDGDDILTGAELHEVIENL-GVGLSLADCQEIIASMDGDGD 141 (157)
Q Consensus 66 ~~~~~i~~~ef~~~~~~~-~~~--~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~ 141 (157)
.++...+-.||+...... ... ....+.++.+-+.+|.|.+|.|+.+|=-.+++.- .+.-+.....+-|+ ..|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH----~dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFH----GDD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhcc----CCc
Confidence 567778888888833322 221 1223778999999999999999999998888863 33333322222222 135
Q ss_pred ccccHHHHHHHH
Q 031582 142 GAVSFEDLQLIV 153 (157)
Q Consensus 142 g~i~~~eF~~~l 153 (157)
..|+.+++-+.+
T Consensus 116 ~~ItVedLWeaW 127 (575)
T KOG4403|consen 116 KHITVEDLWEAW 127 (575)
T ss_pred cceeHHHHHHHH
Confidence 567777665544
No 195
>PLN02223 phosphoinositide phospholipase C
Probab=60.04 E-value=43 Score=26.81 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHHccCCC--------CCCccchHHHHh-hch
Q 031582 18 LSLVETFRAFDSDNDGSITGAELSGIF---NSV-G-YRASEEDVREMMRQGDTN--------NDGLLSLEEFLE-MNT 81 (157)
Q Consensus 18 ~~~~~~F~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~l~~~~d~~--------~~~~i~~~ef~~-~~~ 81 (157)
+.++.+|..+. .+.|.++...+.++| ... | ...+.++++.++..+-.. ..+.++.+.|.. +..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 56788899885 678999999999998 432 2 455666777776654322 225699999999 554
No 196
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=58.07 E-value=35 Score=19.80 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=39.0
Q ss_pred CCcccHHHHHHHHHHcCCC-----CCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCC
Q 031582 32 DGSITGAELSGIFNSVGYR-----ASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDD 106 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~-----~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 106 (157)
||.|+..|...+.+.+... .....+..++...-.. .-+...+........+.......+..++..... ||
T Consensus 13 DG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~a--DG 87 (104)
T cd07177 13 DGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVALA--DG 87 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cc
Confidence 7889998877776544211 1223444444433222 123444444222222222223445566666554 57
Q ss_pred ccCHHHHHH
Q 031582 107 ILTGAELHE 115 (157)
Q Consensus 107 ~I~~~el~~ 115 (157)
.++..|..-
T Consensus 88 ~~~~~E~~~ 96 (104)
T cd07177 88 ELDPEERAL 96 (104)
T ss_pred CCCHHHHHH
Confidence 887777653
No 197
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.10 E-value=36 Score=22.99 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc----CCCCCCccchHHHHh-hchhhh-------
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQG----DTNNDGLLSLEEFLE-MNTKDM------- 84 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----d~~~~~~i~~~ef~~-~~~~~~------- 84 (157)
.+.++++|.-||+..=-..+.+++..++...++--+...+..++... +-. .+ +|.+|+= +....+
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~-~e--sf~~ylW~fv~~~Pi~~~~~~ 128 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLE-QN--DLVEFLWSFVNHQPQPRQRPT 128 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHH-Hc--cHHHHHHhccCCCCccCCccc
Confidence 46789999999999888899999999998888776676666665422 111 11 7888774 321111
Q ss_pred --hhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 031582 85 --ELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG 121 (157)
Q Consensus 85 --~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~ 121 (157)
..+........+.+.+-+.|-..+-..-...+|.+.|
T Consensus 129 ~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G 167 (179)
T TIGR00624 129 DSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATG 167 (179)
T ss_pred cccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHC
Confidence 0011113355555556567777777777777777776
No 198
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=54.18 E-value=41 Score=20.82 Aligned_cols=50 Identities=8% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 24 FRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 24 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
+.+.-..++..+|..++..+|...|+.+....+..++..+. ..+..+++.
T Consensus 9 YlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 9 YLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 33444566777999999999999999999988888888773 156666655
No 199
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=53.71 E-value=48 Score=26.13 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=47.8
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHH---hcC-----CCCccccHHHHHHHHH
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIAS---MDG-----DGDGAVSFEDLQLIVN 154 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~---~d~-----~~~g~i~~~eF~~~l~ 154 (157)
.-..+|..+-....+.|+.-.|...|+..|..-++..++.++.. ++. ...+.++.+.|.+++-
T Consensus 87 leDLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 87 LEDLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 34467888877778999999999999999987787777777654 342 2356889999988753
No 200
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.26 E-value=87 Score=22.56 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHHHHhhh-cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESL-NLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~-D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
..+...|..+ |++.+..|..+.+..+++.+|....+-.+-.+--.++...-+..+.++|+.=+..
T Consensus 64 ~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 64 KRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 4555666554 5555578888888889998885554433333333455555677888888775544
No 201
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=51.21 E-value=31 Score=20.49 Aligned_cols=79 Identities=16% Similarity=0.048 Sum_probs=43.1
Q ss_pred CCcccHHHHHHHHHHcC----C-CCCHHHHHHHHHccCCCCCCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCC
Q 031582 32 DGSITGAELSGIFNSVG----Y-RASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGD 105 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~----~-~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~ 105 (157)
||.++..|...+.+.+. . ......+..++...-..- ...+..++.. +..... +.....-+..++..... |
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLP-PELRETAFAVAVDIAAA--D 91 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHc--c
Confidence 78899998877776543 2 233445555555443220 1244566666 443332 22233556666666654 5
Q ss_pred CccCHHHHH
Q 031582 106 DILTGAELH 114 (157)
Q Consensus 106 g~I~~~el~ 114 (157)
|.++..|-.
T Consensus 92 G~~~~~E~~ 100 (111)
T cd07176 92 GEVDPEERA 100 (111)
T ss_pred CCCCHHHHH
Confidence 677776654
No 202
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=49.67 E-value=58 Score=19.84 Aligned_cols=30 Identities=13% Similarity=0.367 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 108 LTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 108 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
||.+++..++...|..+....+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999998888873
No 203
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=49.58 E-value=58 Score=23.47 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=22.6
Q ss_pred CCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 104 GDDILTGAELHEVIENLG--VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 104 ~~g~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.||.|+..|+. +.+.+. ..++.++...+...+...+....++.+|+..+.
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFR 119 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 35666666665 223221 224454433333333333333355555555543
No 204
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=49.50 E-value=31 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=18.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHH
Q 031582 107 ILTGAELHEVIENLGVGLSLADCQEI 132 (157)
Q Consensus 107 ~I~~~el~~~l~~~~~~~~~~~~~~~ 132 (157)
.|+.++|...|+.....++.++++.+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47788888888887777777776554
No 205
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=49.39 E-value=38 Score=22.95 Aligned_cols=37 Identities=30% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 28 DSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 28 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
..+.+|+++.+++...++.-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3577999999999999988778888989988886654
No 206
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=49.31 E-value=31 Score=18.94 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCC
Q 031582 31 NDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNN 67 (157)
Q Consensus 31 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~ 67 (157)
.++-++..++...|...|..+++..+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3567889999999988889999999998888887654
No 207
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=49.09 E-value=54 Score=20.14 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=38.6
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 24 FRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 24 F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
+.+.-..++..+|.+++..+|...|+.+....+..+++.+. + .+..+.+.
T Consensus 7 ylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~--G---Kdi~eLIa 56 (109)
T cd05833 7 YLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE--G---KDVEELIA 56 (109)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc--C---CCHHHHHH
Confidence 33444566778999999999999999999888888887773 1 56677666
No 208
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=48.58 E-value=50 Score=21.16 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCccCHHHHHHHHHHhC---------CCCCHHHHHHHHHHhcCCCCc-cccHHHHHHH
Q 031582 104 GDDILTGAELHEVIENLG---------VGLSLADCQEIIASMDGDGDG-AVSFEDLQLI 152 (157)
Q Consensus 104 ~~g~I~~~el~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~eF~~~ 152 (157)
|+-.||.+||.+++..-. ..+..+++..+...+...+.+ .+++.|-.+.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 568999999999988642 457888999999988775554 5998887654
No 209
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.22 E-value=63 Score=19.79 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=32.0
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 96 AFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
++.++-..+. .||.+.+..++...|..+.+..+..++..+.
T Consensus 6 AaLLL~~~g~-~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 6 AALLLHSAGK-EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3333333343 8999999999999999999989888888773
No 210
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=47.76 E-value=85 Score=21.16 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=30.0
Q ss_pred ccchHHHHh-hchhh-hhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCC
Q 031582 70 LLSLEEFLE-MNTKD-MELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGV 122 (157)
Q Consensus 70 ~i~~~ef~~-~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~ 122 (157)
.++.+.|+. +.... .+.....+....+=..+.......||..||..++.+.|+
T Consensus 36 av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 36 AVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGP 90 (181)
T ss_dssp EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSS
T ss_pred eeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCC
Confidence 677777777 44433 222222233333334444666788999999999998883
No 211
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=47.17 E-value=39 Score=22.06 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNS 46 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 46 (157)
...+++.+.......|..+.+|||..++++++-.
T Consensus 64 ~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 64 GMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 3455677777778888888888999998888643
No 212
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=47.00 E-value=72 Score=24.01 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=54.8
Q ss_pred HHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHH------HHH
Q 031582 58 EMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLAD------CQE 131 (157)
Q Consensus 58 ~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~------~~~ 131 (157)
.++..+|..+.|.++.-.... ....-+.+...++++.+|.... |..|.+..-.+-+++...-...|..- ..+
T Consensus 114 flLaA~ds~~~g~~~vfavki-alatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te 191 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKI-ALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTE 191 (434)
T ss_pred HHHhhcCccCCCCceeecchh-hhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHH
Confidence 445667888888776554333 2222333344588999999986 56688888888888876522222110 112
Q ss_pred HHHHhcCCCCccccHHHHHHHHH
Q 031582 132 IIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 132 ~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
.......-++.+++++.|...|+
T Consensus 192 ~~a~~cf~qqrKv~Ln~fldtl~ 214 (434)
T KOG4301|consen 192 LSARLCFLQQRKVELNQFLDTLM 214 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222223455677777776654
No 213
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=46.71 E-value=68 Score=19.74 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
-.|-++...++-..+..++..+|...|.....+.++.++..+. |+ +.+|.+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 3456677778888999999999999999999999999998873 22 5666554
No 214
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=46.38 E-value=42 Score=17.27 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=34.5
Q ss_pred hhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031582 10 ETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMR 61 (157)
Q Consensus 10 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 61 (157)
..+++.++..|...|.. +.+++..+...+...+| ++...+...|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 45688999999999984 56889999888888765 44666666664
No 215
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=45.72 E-value=93 Score=22.23 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=33.2
Q ss_pred hhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc
Q 031582 9 EETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 9 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 63 (157)
...+|..+++.+++++..++. ++|+++..++..-+ .++..-+...++.+
T Consensus 174 i~tLSySEleAv~~IL~~L~~-~egrlse~eLAerl-----GVSRs~ireAlrkL 222 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELDG-NEGLLVASKIADRV-----GITRSVIVNALRKL 222 (251)
T ss_pred HHhccHhHHHHHHHHHHHhcc-ccccccHHHHHHHH-----CCCHHHHHHHHHHH
Confidence 445677888888888888863 26888888877664 34455555555555
No 216
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=45.26 E-value=29 Score=16.07 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=11.1
Q ss_pred CCccCHHHHHHHHHHh
Q 031582 105 DDILTGAELHEVIENL 120 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~ 120 (157)
.|.|+.+++..+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4777777777776653
No 217
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=45.13 E-value=58 Score=18.47 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=23.9
Q ss_pred ccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHH
Q 031582 70 LLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIEN 119 (157)
Q Consensus 70 ~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~ 119 (157)
..+|++|.. +.....++... ..+..-+..+-. +++ +..++..-+..
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~-~~~~~~l~~l~Q-~~e--sv~~y~~rf~~ 72 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRK-EQARQELNSLRQ-GNE--SVREYVNRFRE 72 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhcc-ccchhhhhhhhc-cCC--cHHHHHHHHHH
Confidence 468888888 66655554433 344444444443 333 44444444443
No 218
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=44.34 E-value=32 Score=17.37 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHcCCCCCHHHH
Q 031582 36 TGAELSGIFNSVGYRASEEDV 56 (157)
Q Consensus 36 ~~~e~~~~l~~~~~~~~~~~~ 56 (157)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888888888888887765
No 219
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.37 E-value=56 Score=18.71 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhcCCC-CccccHHHHHHHH
Q 031582 110 GAELHEVIENLGVGLSLADCQEIIASMDGDG-DGAVSFEDLQLIV 153 (157)
Q Consensus 110 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~eF~~~l 153 (157)
.+++...|. |...+.+.+.+.+...+.+. -+.++.++|+++|
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 555555553 66677888888888775443 4578888887764
No 220
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=43.05 E-value=69 Score=18.76 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=16.9
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHH
Q 031582 107 ILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDL 149 (157)
Q Consensus 107 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF 149 (157)
.|+-.+|+..|.......+..+..++=..+|...++.||.=||
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhh
Confidence 3444444444444432223333333333444444444444444
No 221
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=40.62 E-value=85 Score=21.18 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchH
Q 031582 29 SDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLE 74 (157)
Q Consensus 29 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ 74 (157)
.|.+|+++.+++...++.-+..++.+++..+...-+ .+...+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 477999999999999876666788888888765443 4445544
No 222
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=39.91 E-value=69 Score=17.90 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHcc
Q 031582 34 SITGAELSGIFNSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 34 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 63 (157)
.-+.+|+...|...|+..+...+.+-++.+
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 558889999999999999999888877765
No 223
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.77 E-value=32 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMR 61 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 61 (157)
.+.++++|..||+.+--..+..++..+|...|+--+...++..+.
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 467899999999999899999999999998887767766666654
No 224
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=39.51 E-value=47 Score=20.46 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 124 LSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 124 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
++.++-..+....+.-+.|.|++.....+|
T Consensus 66 ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 66 LSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred CCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 344444444444433344444444444433
No 225
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=38.34 E-value=49 Score=18.62 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNS 46 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 46 (157)
+..+.+.++.++...-. .+..|+.|+..+...
T Consensus 34 ~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~E 65 (71)
T PF06569_consen 34 SEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEE 65 (71)
T ss_pred ChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHH
Confidence 33333444444443322 334444444444433
No 226
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=38.00 E-value=1.9e+02 Score=23.01 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=36.0
Q ss_pred cchHHHHh-hchhh-hhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 031582 71 LSLEEFLE-MNTKD-MELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG 121 (157)
Q Consensus 71 i~~~ef~~-~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~ 121 (157)
.+..||-. +.... .-.+.....+..+|+..|.++--.|+..+|+.++..++
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~ 158 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS 158 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 45566655 33222 22233345688999999999999999999999998764
No 227
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=37.28 E-value=1.2e+02 Score=22.91 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=48.6
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCC----------HHHHHHHHHccCCCCCCccchHHHHh---hchhhhhhhhHHHHHH
Q 031582 28 DSDNDGSITGAELSGIFNSVGYRAS----------EEDVREMMRQGDTNNDGLLSLEEFLE---MNTKDMELGSLGNLLK 94 (157)
Q Consensus 28 D~~~~g~i~~~e~~~~l~~~~~~~~----------~~~~~~l~~~~d~~~~~~i~~~ef~~---~~~~~~~~~~~~~~~~ 94 (157)
+.++.+.++..+-..++..+|++.. ...+..++..+...+...|-...--. ..+...+ ......+.
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~-~~~~~di~ 213 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTS-YSNCSDIR 213 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecC-CCCcHHHH
Confidence 3444567889999999988876532 25677777766555433333322111 1111111 11235666
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
.+|+.+-.-+-+.....=++..+...
T Consensus 214 ~~~~~~~d~~~~~~~~Ri~R~~~~~~ 239 (342)
T cd07894 214 YAFRYPFDLGRDFFFSRIVREGFQSV 239 (342)
T ss_pred HHhhhccccCchHHHHHHHHHHHHHH
Confidence 67766644455555554444444443
No 228
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=37.14 E-value=55 Score=16.90 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC
Q 031582 105 DDILTGAELHEVIENLGVGLSLADCQEIIASMDGD 139 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 139 (157)
.|.|+..+++..+. ++...+-.+++.+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 68899999998884 6777777888888753
No 229
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=36.94 E-value=2.9e+02 Score=24.15 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=53.5
Q ss_pred CCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcC--CCCCccCHHH-----HHHHHHHhCCCCCHHHHHHHHHHh
Q 031582 64 DTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNL--DGDDILTGAE-----LHEVIENLGVGLSLADCQEIIASM 136 (157)
Q Consensus 64 d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~--~~~g~I~~~e-----l~~~l~~~~~~~~~~~~~~~~~~~ 136 (157)
..+..|.|....++.+...... +..+..+...+-. +....|..++ |..++..+. +..+++++|..+
T Consensus 158 qvn~~grip~knI~k~F~~~k~----~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSADKK----EKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhcCCc----hhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHHHHHHHh
Confidence 3456677777777773222111 2344444444322 2234455444 455555544 557899999999
Q ss_pred cCCCCccccHHHHHHHHHh
Q 031582 137 DGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 137 d~~~~g~i~~~eF~~~l~~ 155 (157)
..++...++.++|..+|..
T Consensus 231 ~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred ccCCCccccHHHHHHHHhh
Confidence 8888789999999999875
No 230
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=36.78 E-value=1e+02 Score=19.05 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=35.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 28 DSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 28 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
-..++..+|.+++..+|...|+.+....+..+++.+.. .+..+.+.
T Consensus 11 ~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 11 VLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34556679999999999999999888888888877731 55666663
No 231
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=36.55 E-value=71 Score=17.06 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHH
Q 031582 12 ETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEE 75 (157)
Q Consensus 12 ~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~e 75 (157)
+++....-++.+|.... +.+.++..++...| +.++..+..+++.+. ..|.|.++.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~--~~GlV~~~~ 56 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLA--EKGLVEYEP 56 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHH--HTTSEEEET
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHH--HCCCEEecC
Confidence 45666777888888775 57889999998887 466777778777774 345555543
No 232
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=36.26 E-value=61 Score=26.69 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHccCCCCCCccchHHHHhhchhhhhhh--------hHHHHHHHHHhhhcCCCC---------------------
Q 031582 55 DVREMMRQGDTNNDGLLSLEEFLEMNTKDMELG--------SLGNLLKAAFESLNLDGD--------------------- 105 (157)
Q Consensus 55 ~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~--------~~~~~~~~~f~~~D~~~~--------------------- 105 (157)
...+++..+|.+.++.++|.+|..+........ ....+...+|..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 334566778888899999999887433221110 011346678888888888
Q ss_pred --CccCHHHHHHHHHH
Q 031582 106 --DILTGAELHEVIEN 119 (157)
Q Consensus 106 --g~I~~~el~~~l~~ 119 (157)
|.|+.+|+..+++.
T Consensus 518 s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 518 SFGVVTVDELVALLAL 533 (975)
T ss_pred ccCeeEHHHHHHHHHH
Confidence 99999999988873
No 233
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.20 E-value=89 Score=19.40 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 108 LTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 108 I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
-|..|++.++...+..+++++++.++...+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 367789999988888888888888876553
No 234
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=36.09 E-value=74 Score=17.14 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=3.6
Q ss_pred ccCHHHHHHHH
Q 031582 107 ILTGAELHEVI 117 (157)
Q Consensus 107 ~I~~~el~~~l 117 (157)
.++.+|+..++
T Consensus 32 ~~s~~eL~~fL 42 (60)
T PF08672_consen 32 DISLEELQEFL 42 (60)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33444444433
No 235
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.80 E-value=63 Score=16.23 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHH
Q 031582 111 AELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLI 152 (157)
Q Consensus 111 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (157)
+|....|..+| +++.++..++..... ...++.++.++-
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 56777788888 778888888887754 334556666554
No 236
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=35.62 E-value=80 Score=20.38 Aligned_cols=32 Identities=9% Similarity=0.291 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHccCCC
Q 031582 35 ITGAELSGIFNSVGYRASEEDVREMMRQGDTN 66 (157)
Q Consensus 35 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~ 66 (157)
.|++++..+...++.+++.+++..+++.++.-
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~ 58 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDI 58 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcC
Confidence 47888998887788899999999999998753
No 237
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=35.15 E-value=78 Score=17.13 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=11.0
Q ss_pred CccCHHHHHHHHHHhC-CCCCHHHHHHHHH
Q 031582 106 DILTGAELHEVIENLG-VGLSLADCQEIIA 134 (157)
Q Consensus 106 g~I~~~el~~~l~~~~-~~~~~~~~~~~~~ 134 (157)
..++.+|...++..+- ...++.++..++.
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~ 42 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLM 42 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455555555555432 3344444444443
No 238
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=35.11 E-value=1.1e+02 Score=18.81 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=33.4
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
.++..+..-+ ..|+.+.+..++...|..+.+..++.++..+.
T Consensus 5 ~a~llL~~ag-kei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 5 YAYLLLHLAG-KEITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred HHHHHHHHcc-CcCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 3444444433 39999999999999999999999999988874
No 239
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=34.46 E-value=76 Score=18.56 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHcc
Q 031582 35 ITGAELSGIFNSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 35 i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 63 (157)
|+.+++..+.+...+.++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56778888887778888888777665444
No 240
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=34.42 E-value=1.6e+02 Score=22.48 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=55.1
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHcCCCC-------CHH----HHHHHHHccCCCCCCccchHHHH---hhchhhhhhhhH
Q 031582 24 FRAFDSDNDGSITGAELSGIFNSVGYRA-------SEE----DVREMMRQGDTNNDGLLSLEEFL---EMNTKDMELGSL 89 (157)
Q Consensus 24 F~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~----~~~~l~~~~d~~~~~~i~~~ef~---~~~~~~~~~~~~ 89 (157)
|..+|.+....++.++-..++...|++. +.. .+..++..++..+...|-+++-- .-.+...+. ..
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~-~n 241 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSY-AN 241 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCc-cC
Confidence 4445555577899999999999887664 333 44566677777666666665431 111211221 12
Q ss_pred HHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 90 GNLLKAAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 90 ~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
...+..+|+.+-.-+-+.....=++..+...
T Consensus 242 ~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~ 272 (374)
T TIGR01209 242 INDIKYAARYFFELGRDFFFSRILREAFQSY 272 (374)
T ss_pred hHHHHHHHhhccccCchHHHHHHHHHHHHHH
Confidence 3667777766644555555555555544433
No 241
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=34.34 E-value=28 Score=29.01 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCC
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDG 69 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~ 69 (157)
=+++.||+.++|.|..-.|+-.+..+.-.+.++....+|..+...+..
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq 521 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ 521 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh
Confidence 346788899999999988888888776666777777888888655544
No 242
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=33.82 E-value=91 Score=18.47 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=4.6
Q ss_pred CCCccccHHHH
Q 031582 139 DGDGAVSFEDL 149 (157)
Q Consensus 139 ~~~g~i~~~eF 149 (157)
.+.++|+..-|
T Consensus 69 ~~~~~Ip~~~~ 79 (90)
T PF02337_consen 69 QGPEKIPIQAF 79 (90)
T ss_dssp CSTTTS-CHHH
T ss_pred hCCCCCChhHH
Confidence 44455554444
No 243
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=33.26 E-value=1.5e+02 Score=19.81 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=30.5
Q ss_pred cchhhccHHHHHHHHHHHHHhCCC-------------CCCcccHHHHHHHHHHcCCCC
Q 031582 7 LSEETETLNHVLSLVETFRAFDSD-------------NDGSITGAELSGIFNSVGYRA 51 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~F~~~D~~-------------~~g~i~~~e~~~~l~~~~~~~ 51 (157)
.....++++.++++.++...+... .-|+|+.+.+..+-..+|+++
T Consensus 11 ~~~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~ 68 (169)
T PRK07571 11 SATHPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPL 68 (169)
T ss_pred CccCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCH
Confidence 444566777888888888888632 247777777777777665553
No 244
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=32.17 E-value=1.1e+02 Score=21.28 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=31.2
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Q 031582 102 LDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDG 138 (157)
Q Consensus 102 ~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 138 (157)
.|..|+.+.+++...++..+..++.+.+..+++.-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 5778999999999999999888999888887776554
No 245
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.09 E-value=1.2e+02 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 031582 110 GAELHEVIENLGVGLSLADCQEIIA 134 (157)
Q Consensus 110 ~~el~~~l~~~~~~~~~~~~~~~~~ 134 (157)
.+|++.++......+++++++.++.
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3344444444434444444444444
No 246
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=32.00 E-value=75 Score=25.14 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=43.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHcc---CC-----CCCCccchHHHHh
Q 031582 22 ETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQG---DT-----NNDGLLSLEEFLE 78 (157)
Q Consensus 22 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~~~i~~~ef~~ 78 (157)
-+|..+-...+++++..-|-++|+..|+.-++..+..++..+ +. ...+.++-+.|..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKk 154 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKK 154 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHH
Confidence 367777656679999999999999999998887777776544 32 2345677777877
No 247
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.51 E-value=68 Score=26.90 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=40.9
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHH
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIV 153 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 153 (157)
++.++++||+..+|.|..-+|+-.+.-+.....++....+|.....++.-.+ ...|..+|
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL 531 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLL 531 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHH
Confidence 6778899999999999998888777666544555566677877754443322 44444443
No 248
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=31.38 E-value=2e+02 Score=24.20 Aligned_cols=58 Identities=19% Similarity=0.286 Sum_probs=38.9
Q ss_pred HHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 55 DVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 55 ~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
....+|+.+...+...+..+.|..+.. .+.+..+|..++...++.|+++.++......
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~~--------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFMG--------DEEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcCC--------HHHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 444566666665655666666666444 3777788888877666668888888766653
No 249
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=31.22 E-value=59 Score=23.08 Aligned_cols=72 Identities=11% Similarity=0.261 Sum_probs=53.1
Q ss_pred cchhhccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh-hch
Q 031582 7 LSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNT 81 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~-~~~ 81 (157)
+.++.+++.+.+.+-+-|...=.+..|.+-..|..-++..-.-.++..+++.--..+. ...|-|.+|+. +..
T Consensus 9 Ia~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 81 (257)
T PRK14074 9 IAQQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIK---ESLIAYSDFLEDLTK 81 (257)
T ss_pred eecccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHH---HHHHHHHHHHHHHHH
Confidence 5678899999999988888887888999999999888876556666666554443332 33577778777 543
No 250
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.80 E-value=1.2e+02 Score=23.48 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=19.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHH
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFL 77 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~ 77 (157)
+|+|+-..-...+-. -+++...+-.+|...|.+++|-++-+||.
T Consensus 457 ~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 444444444333322 23333444444444444455545444443
No 251
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=30.77 E-value=1e+02 Score=17.70 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHH--------------HHHHHhcCCCCc-cccHHHHHHHHHh
Q 031582 107 ILTGAELHEVIENLGVGLSLADCQ--------------EIIASMDGDGDG-AVSFEDLQLIVNS 155 (157)
Q Consensus 107 ~I~~~el~~~l~~~~~~~~~~~~~--------------~~~~~~d~~~~g-~i~~~eF~~~l~~ 155 (157)
.|+..+++.+.+.+| +++.+++ +++..+-..... .-++...++.|+.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 456666777777766 5555444 444444322221 4566666666554
No 252
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=30.12 E-value=1.1e+02 Score=20.86 Aligned_cols=49 Identities=33% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHH---HHHHccCCCCCCccchHHHHhhc
Q 031582 29 SDNDGSITGAELSGIFNSVGYRASEEDVR---EMMRQGDTNNDGLLSLEEFLEMN 80 (157)
Q Consensus 29 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~---~l~~~~d~~~~~~i~~~ef~~~~ 80 (157)
.|.+|+++ ..+..+...++ .+.+++. .+++.+++-|=|.-+.+|.+.++
T Consensus 45 LD~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQ 96 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQ 96 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHH
T ss_pred CCCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHH
Confidence 46688877 33445555555 4455444 44567888888888999977643
No 253
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=29.89 E-value=1e+02 Score=18.00 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHcc
Q 031582 34 SITGAELSGIFNSVGYRASEEDVREMMRQG 63 (157)
Q Consensus 34 ~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 63 (157)
.|+.+++..+.+...+.++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 377888888888888888887777665443
No 254
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.76 E-value=1e+02 Score=23.79 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHH
Q 031582 93 LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLI 152 (157)
Q Consensus 93 ~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 152 (157)
+..+|..+.+ -+|.|+-.--+.-+- +..+++..+-.+.+..|.++||.++-+||.-.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4556666543 457777655444333 35588888999999999999999999999753
No 255
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=29.29 E-value=63 Score=18.63 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHH
Q 031582 121 GVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVN 154 (157)
Q Consensus 121 ~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~ 154 (157)
|-.+++...+.+-+.++......|+++|++.|-.
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4455665555555666555555688888877654
No 256
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=28.64 E-value=65 Score=18.59 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=13.7
Q ss_pred HHHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 95 AAFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 95 ~~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
.+-..++....|.|+.+.|...+-.+
T Consensus 23 tm~yyl~eY~~~~~tVealV~aL~el 48 (81)
T cd07357 23 TLSYYLDEYRSGHISVDALVMALFEL 48 (81)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33334444555666666666555443
No 257
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.28 E-value=75 Score=14.81 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=12.0
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 031582 34 SITGAELSGIFNSVGYRAS 52 (157)
Q Consensus 34 ~i~~~e~~~~l~~~~~~~~ 52 (157)
.++..|+...++..|++.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4566777777777766654
No 258
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=27.60 E-value=1.8e+02 Score=19.04 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHhCC-------------CCCCcccHHHHHHHHHHcCCCCC
Q 031582 13 TLNHVLSLVETFRAFDS-------------DNDGSITGAELSGIFNSVGYRAS 52 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~-------------~~~g~i~~~e~~~~l~~~~~~~~ 52 (157)
++..+.++.+++..+.. +.-|+|+.+.+..+-..+|++++
T Consensus 4 ~~~~~~~i~~ii~~y~~~~~~li~~L~~vQ~~~G~Ip~e~~~~iA~~l~v~~~ 56 (156)
T PRK05988 4 EPWDAARIAAIIAEHKHLEGALLPILHAIQDEFGYVPEDAVPVIAEALNLSRA 56 (156)
T ss_pred chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHH
Confidence 34455566666666642 23467777777777666655543
No 259
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=27.52 E-value=75 Score=20.67 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcc
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSI 35 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i 35 (157)
+..++.++.++|..++.+.+|.-
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~~ 67 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGKK 67 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccCc
Confidence 56788999999999987766543
No 260
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=27.38 E-value=1.6e+02 Score=18.33 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 031582 105 DDILTGAELHEVIENLGVGLSLADCQEIIASM 136 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 136 (157)
.|.++.+++..-+..-+..++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 57788888877666556667777766666554
No 261
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=27.14 E-value=1.5e+02 Score=18.02 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=31.6
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 96 AFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
++.++-..|. .||.+.+..++...|..........+...+.
T Consensus 6 A~Lll~~~g~-~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 6 AALLLHSAGK-EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 3333333343 8999999999999998888888888888774
No 262
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=2.2e+02 Score=19.70 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=23.4
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 30 DNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 30 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
|=+|.||.++....+.. ++...+...+...+ -++.+++.+...
T Consensus 9 DFDGTITl~Ds~~~itd---tf~~~e~k~l~~~v---ls~tiS~rd~~g 51 (220)
T COG4359 9 DFDGTITLNDSNDYITD---TFGPGEWKALKDGV---LSKTISFRDGFG 51 (220)
T ss_pred cCCCceEecchhHHHHh---ccCchHHHHHHHHH---hhCceeHHHHHH
Confidence 34566666666666654 23333444555555 344566666555
No 263
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=27.01 E-value=1.1e+02 Score=16.43 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 031582 108 LTGAELHEVIENLGVGLSLADCQEI 132 (157)
Q Consensus 108 I~~~el~~~l~~~~~~~~~~~~~~~ 132 (157)
.+.+++..+.+..|+.+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478899999999999999888764
No 264
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=26.65 E-value=1.7e+02 Score=18.91 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
....+.+|+...|+..|..++...+.+.++.+.
T Consensus 14 ~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 14 EKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 557899999999999999999999988887664
No 265
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=26.49 E-value=1.1e+02 Score=17.27 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 031582 13 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNS 46 (157)
Q Consensus 13 ~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 46 (157)
+.++.+.+-.-|... -.+|++..+||..++..
T Consensus 11 s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 11 SAEEADGALIQLSQM--LASGKLRGEEINSLLEA 42 (75)
T ss_pred CHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHH
Confidence 334444443333333 23899999999999865
No 266
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.26 E-value=82 Score=14.56 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 031582 34 SITGAELSGIFNSVGYRAS 52 (157)
Q Consensus 34 ~i~~~e~~~~l~~~~~~~~ 52 (157)
.++..++...++..|++.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4567777788777776654
No 267
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.14 E-value=73 Score=14.58 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=5.5
Q ss_pred cCHHHHHHHHH
Q 031582 108 LTGAELHEVIE 118 (157)
Q Consensus 108 I~~~el~~~l~ 118 (157)
|+.+|++.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666654
No 268
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=26.05 E-value=1.3e+02 Score=22.74 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 96 AFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
....+|..+.|.++.--..-.+......--......+|.... +..|.+.+..|.+++..+
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 345678999999998888877777642222345666666663 557777777777777654
No 269
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=25.97 E-value=1.7e+02 Score=17.98 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=27.9
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 031582 107 ILTGAELHEVIENLGVGLSLADCQEIIASMD 137 (157)
Q Consensus 107 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d 137 (157)
.||.+.+..++...|....+.....+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999998888888888888874
No 270
>KOG1584 consensus Sulfotransferase [General function prediction only]
Probab=25.62 E-value=2.8e+02 Score=20.52 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=40.5
Q ss_pred chHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHH--------HHHHhCCCCCHHHHHHHHH
Q 031582 72 SLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHE--------VIENLGVGLSLADCQEIIA 134 (157)
Q Consensus 72 ~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~--------~l~~~~~~~~~~~~~~~~~ 134 (157)
++++|.. +......-++.-+.+...+++-++++-=.+..+|+++ +.+.+|..++.++.+.++.
T Consensus 156 ~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~ 227 (297)
T KOG1584|consen 156 TFEEFFESFCNGVVPYGPWWDHVLGYWELEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVV 227 (297)
T ss_pred cHHHHHHHHhCCcCCcCChHHHHHHHHHhcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhH
Confidence 3777776 5544444444446777777777777766777777654 5555688888888665443
No 271
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.98 E-value=57 Score=22.19 Aligned_cols=104 Identities=10% Similarity=0.148 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC----CCCCCccchHHHHh-hchhhh-------
Q 031582 17 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGD----TNNDGLLSLEEFLE-MNTKDM------- 84 (157)
Q Consensus 17 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d----~~~~~~i~~~ef~~-~~~~~~------- 84 (157)
...++++|..||+..=-..+.+++..++...++--+...++.++.... -... .-+|.+|+= +....+
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~fv~~~p~~~~~~~ 131 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSFVNHQPQVTQATT 131 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhccCCCcccCCccc
Confidence 467899999999988888899999999988776666666666554221 0111 237777773 321100
Q ss_pred --hhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 031582 85 --ELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG 121 (157)
Q Consensus 85 --~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~ 121 (157)
..+........+.+.+-+.|-..+-..-...+|.+.|
T Consensus 132 ~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G 170 (187)
T PRK10353 132 LSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACG 170 (187)
T ss_pred hhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHC
Confidence 0011112233444444455666666666666666666
No 272
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=24.97 E-value=1.3e+02 Score=18.11 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=36.4
Q ss_pred cchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHHh
Q 031582 71 LSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLG-VGLSLADCQEIIASM 136 (157)
Q Consensus 71 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~-~~~~~~~~~~~~~~~ 136 (157)
+.-.+|..+.......-. ++++..+-..+...+...++..++...+...- ...+++++...-..+
T Consensus 20 vP~~Dy~PLlALL~r~Lt-d~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLT-DDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS--HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 777777774333333333 35666666666555666667777777777764 455666666665544
No 273
>PF14164 YqzH: YqzH-like protein
Probab=24.77 E-value=1.3e+02 Score=16.52 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhcCC-CCCccCHHHHHHHHHHhC---CCCCHHHHHHHHH
Q 031582 90 GNLLKAAFESLNLD-GDDILTGAELHEVIENLG---VGLSLADCQEIIA 134 (157)
Q Consensus 90 ~~~~~~~f~~~D~~-~~g~I~~~el~~~l~~~~---~~~~~~~~~~~~~ 134 (157)
...+.++|+-|..| ..-.++..|+..+...+. ..-++.++.++++
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVe 55 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVE 55 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 36788889988776 667888888888777652 3344445555554
No 274
>PRK00441 argR arginine repressor; Provisional
Probab=24.64 E-value=1.9e+02 Score=18.77 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccC
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGD 64 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d 64 (157)
.+..+..++...|...|+..+...+.+-++.+.
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 568899999999999999999999988877653
No 275
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=24.32 E-value=1.8e+02 Score=21.81 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=31.6
Q ss_pred HcCCCCCHHHHHHHHHccCCCCCCccchHHHHhhchhhhhhhhHHHHHHHHHhhhcCCCCCccCHHHHHHHH
Q 031582 46 SVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVI 117 (157)
Q Consensus 46 ~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~el~~~l 117 (157)
+.|+......+...++ .|.++-+|=+.+...... ....+.+...++.++ ||.+||..++
T Consensus 284 KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~-~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 284 KFGFGRATDHASIDIR------SGRITREEAIELVKEYDG-EFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred hcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcc-cccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4676665555555542 456788877773332211 111255666666666 3455565543
No 276
>PTZ00315 2'-phosphotransferase; Provisional
Probab=24.32 E-value=1.7e+02 Score=23.89 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=30.7
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Q 031582 101 NLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDG 138 (157)
Q Consensus 101 D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 138 (157)
..|.+|++..+++.+.....+..++.+.+..++..=|+
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 45788999999999988766666889999988876543
No 277
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=23.80 E-value=2.5e+02 Score=23.65 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHh
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~ 155 (157)
...+.+|+...+.+.-.+..+++..++ .+++++..+..++...+..|+...|......
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 557889999988887788777666544 5678888888887766656999998876543
No 278
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=23.36 E-value=1.3e+02 Score=17.30 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH
Q 031582 39 ELSGIFNSVGYRASEEDVREMM 60 (157)
Q Consensus 39 e~~~~l~~~~~~~~~~~~~~l~ 60 (157)
|+..+|+.+|-++++++..-+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 6778899999999998877654
No 279
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=23.36 E-value=3.2e+02 Score=20.33 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCCC---ccCHHHHHHHHHHhC--CCCCHHHHHHHHHHhcCCCCccccHHHHHHHHHhc
Q 031582 91 NLLKAAFESLNLDGDD---ILTGAELHEVIENLG--VGLSLADCQEIIASMDGDGDGAVSFEDLQLIVNSL 156 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g---~I~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l~~~ 156 (157)
..+..++..+++.++| .|+..++......+. ..--...+..+.+.|.... =+|+.++++|.+.
T Consensus 227 ~~i~~m~~sl~~~g~g~~~~~~~A~YQAWqAgFdaq~~~iqsn~Qtl~qKYSqAN---StFDNLVKVLSst 294 (308)
T TIGR02553 227 TPLIKMRDDLPPLGTGTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQKYSNAN---SLFDNLVKVLSST 294 (308)
T ss_pred HHHHHHHHhcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHH
Confidence 3455556666555544 477777777666542 1111223555666664322 3577777777653
No 280
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.13 E-value=80 Score=29.05 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCCCCCccCHHHHHHHHHHhC
Q 031582 91 NLLKAAFESLNLDGDDILTGAELHEVIENLG 121 (157)
Q Consensus 91 ~~~~~~f~~~D~~~~g~I~~~el~~~l~~~~ 121 (157)
++...+|..+|++..|.|...++..+++.+.
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 7899999999999999999999999999873
No 281
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=23.02 E-value=1.9e+02 Score=17.55 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=32.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHccCCCCCCccchHHHHh
Q 031582 32 DGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE 78 (157)
Q Consensus 32 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~~~i~~~ef~~ 78 (157)
.-.+|.+++..++...|+......+..+.+.+. ..+..+++.
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~-----gk~i~elIa 56 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALE-----GKDIKDLLS 56 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc-----CCCHHHHhh
Confidence 447999999999999999988877777766663 156777776
No 282
>PHA02335 hypothetical protein
Probab=22.92 E-value=1.6e+02 Score=18.02 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=19.4
Q ss_pred CCccchHHHHh-hchhhhhhhhHHHHHHHHHhhhcCCC
Q 031582 68 DGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLNLDG 104 (157)
Q Consensus 68 ~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~f~~~D~~~ 104 (157)
-..|++++|.. +.+ ...+...|+.|..-+
T Consensus 22 p~sVt~ddf~~DlkR--------i~yIkrllKRy~~~~ 51 (118)
T PHA02335 22 PQSVTYDDFEEDLKR--------FKYIKRLFKRYLNTG 51 (118)
T ss_pred cccccHHHHHHHHHH--------HHHHHHHHHhhcCCC
Confidence 44588888877 666 356677777776544
No 283
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.65 E-value=2.4e+02 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=5.6
Q ss_pred ccCHHHHHHHHH
Q 031582 107 ILTGAELHEVIE 118 (157)
Q Consensus 107 ~I~~~el~~~l~ 118 (157)
.++.+||...|.
T Consensus 7 ~~~LeeLe~kLa 18 (379)
T PF11593_consen 7 NLKLEELEEKLA 18 (379)
T ss_pred CCcHHHHHHHHh
Confidence 344445544444
No 284
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.38 E-value=1e+02 Score=21.30 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHhhhcCCCCCccCHHHHHHHHHHh
Q 031582 96 AFESLNLDGDDILTGAELHEVIENL 120 (157)
Q Consensus 96 ~f~~~D~~~~g~I~~~el~~~l~~~ 120 (157)
+..-+|.|++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3447899999999999999888754
No 285
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=22.11 E-value=1.2e+02 Score=15.19 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=33.0
Q ss_pred hccHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHc
Q 031582 11 TETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQ 62 (157)
Q Consensus 11 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~ 62 (157)
.+++.++..+...|...- +.+..+...+...+|+ +...+...|..
T Consensus 6 ~~~~~~~~~L~~~f~~~~-----~P~~~~~~~la~~~~l--~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQKNP-----YPSREEREELAAKLGL--SERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHCc--CHHHHHHhHHH
Confidence 467888899988887332 8889999888887654 46667666643
No 286
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=21.61 E-value=35 Score=21.90 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=11.5
Q ss_pred CCCCCccCHHHHHHHHHH
Q 031582 102 LDGDDILTGAELHEVIEN 119 (157)
Q Consensus 102 ~~~~g~I~~~el~~~l~~ 119 (157)
.+.++.|+.+-|...|..
T Consensus 36 v~~d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 36 VNDDQSIDFERLAPYLGG 53 (140)
T ss_pred EcCCceecHHHHhhhcCC
Confidence 355677777777666653
No 287
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=21.44 E-value=1.8e+02 Score=16.96 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=17.5
Q ss_pred cchhhccHHHHHHHHHHHHHhCCCCCC
Q 031582 7 LSEETETLNHVLSLVETFRAFDSDNDG 33 (157)
Q Consensus 7 ~~~~~~~~~~~~~~~~~F~~~D~~~~g 33 (157)
+=.+.++++|+..+++++..- +.++|
T Consensus 47 ~F~D~lTpDQVrAlHRlvTsS-pe~d~ 72 (92)
T PHA02681 47 SFEDKMTDDQVRAFHALVTSS-PEDDP 72 (92)
T ss_pred hhhccCCHHHHHHHHHHHhCC-CCCCC
Confidence 344567888888888888743 44444
No 288
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=20.96 E-value=61 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=12.4
Q ss_pred cCCCCCccCHHHHHHH
Q 031582 101 NLDGDDILTGAELHEV 116 (157)
Q Consensus 101 D~~~~g~I~~~el~~~ 116 (157)
|.++.|+||..-++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 4578899998887765
No 289
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.89 E-value=92 Score=17.09 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=9.4
Q ss_pred CccccHHHHHHHHHhc
Q 031582 141 DGAVSFEDLQLIVNSL 156 (157)
Q Consensus 141 ~g~i~~~eF~~~l~~~ 156 (157)
.|.|+++.|++..+.+
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 4567777777666543
No 290
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=20.45 E-value=2.1e+02 Score=17.14 Aligned_cols=10 Identities=0% Similarity=0.116 Sum_probs=4.2
Q ss_pred HHHHHHHHHh
Q 031582 127 ADCQEIIASM 136 (157)
Q Consensus 127 ~~~~~~~~~~ 136 (157)
+.+-+++..+
T Consensus 50 Eq~~qmL~~W 59 (97)
T cd08316 50 EQKVQLLRAW 59 (97)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 291
>PHA02105 hypothetical protein
Probab=20.35 E-value=1.6e+02 Score=15.79 Aligned_cols=48 Identities=17% Similarity=0.073 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHccCCCC--CCccchHHHHhhch
Q 031582 34 SITGAELSGIFNSV---GYRASEEDVREMMRQGDTNN--DGLLSLEEFLEMNT 81 (157)
Q Consensus 34 ~i~~~e~~~~l~~~---~~~~~~~~~~~l~~~~d~~~--~~~i~~~ef~~~~~ 81 (157)
+++++++.+++... .+++..+.+..+-..+..-. --.++|+||..+..
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46788888887654 35566666666655554322 23478888877433
No 292
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=20.29 E-value=1.1e+02 Score=16.57 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=12.6
Q ss_pred CCCCccccHHHHHHHHHh
Q 031582 138 GDGDGAVSFEDLQLIVNS 155 (157)
Q Consensus 138 ~~~~g~i~~~eF~~~l~~ 155 (157)
.|.||++|-..|++++-.
T Consensus 5 TN~dGrLSTT~~iQffg~ 22 (60)
T PF10841_consen 5 TNADGRLSTTAFIQFFGA 22 (60)
T ss_pred cCCCCcEehHHHHHHHHH
Confidence 356788888777777643
No 293
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.11 E-value=1.4e+02 Score=25.70 Aligned_cols=65 Identities=20% Similarity=0.397 Sum_probs=44.0
Q ss_pred HHHHHHhhhcCCCCCccCHHHHHHHHHHhCCCCCHHHHH-HHHHHhcCCCCccccHHHHHHHHHhcC
Q 031582 92 LLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQ-EIIASMDGDGDGAVSFEDLQLIVNSLL 157 (157)
Q Consensus 92 ~~~~~f~~~D~~~~g~I~~~el~~~l~~~~~~~~~~~~~-~~~~~~d~~~~g~i~~~eF~~~l~~~~ 157 (157)
.++..+..+|......|+..+++.++......++..... +-+.. |.-+.+.++|++|..+...++
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lm 210 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLM 210 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHh
Confidence 355666667777788899999999998776666553321 22222 233466799999998877653
No 294
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=20.07 E-value=1.5e+02 Score=15.44 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 031582 105 DDILTGAELHEVIENLGVGLSLADCQEII 133 (157)
Q Consensus 105 ~g~I~~~el~~~l~~~~~~~~~~~~~~~~ 133 (157)
.|.|+.+||..=+.....-.+..++..++
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 57788888777666554444555555444
Done!