Query 031584
Match_columns 157
No_of_seqs 145 out of 1108
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 6.1E-58 1.3E-62 321.9 14.7 147 4-154 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 8.3E-56 1.8E-60 317.4 17.0 146 4-153 6-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 8.2E-53 1.8E-57 304.6 19.0 151 1-156 1-151 (152)
4 PLN00172 ubiquitin conjugating 100.0 5.2E-52 1.1E-56 299.1 18.4 146 4-153 2-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 3.3E-52 7.2E-57 285.5 14.6 147 1-151 1-148 (152)
6 KOG0418 Ubiquitin-protein liga 100.0 3E-47 6.6E-52 275.6 14.8 154 1-155 1-155 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 6.4E-47 1.4E-51 266.6 15.6 144 4-151 6-163 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 7.4E-45 1.6E-49 252.7 15.4 149 1-153 1-157 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 4.9E-45 1.1E-49 261.1 14.7 138 7-148 1-140 (140)
10 cd00195 UBCc Ubiquitin-conjuga 100.0 2.1E-44 4.5E-49 258.2 16.1 139 6-148 2-141 (141)
11 KOG0421 Ubiquitin-protein liga 100.0 6.4E-45 1.4E-49 253.1 12.1 142 4-150 30-171 (175)
12 KOG0426 Ubiquitin-protein liga 100.0 2.6E-44 5.7E-49 246.8 13.9 148 1-152 1-163 (165)
13 smart00212 UBCc Ubiquitin-conj 100.0 1E-43 2.3E-48 255.6 17.1 143 6-152 1-145 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 1.3E-42 2.9E-47 240.3 14.2 148 3-155 2-151 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 1.4E-41 3.1E-46 242.4 12.0 149 1-155 1-150 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 1E-38 2.2E-43 228.2 11.6 147 2-155 27-177 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 6.8E-37 1.5E-41 219.1 7.4 147 4-154 11-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 1.4E-33 3E-38 193.7 11.5 114 2-119 14-128 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.2E-29 2.5E-34 187.6 14.8 112 3-120 5-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.1E-23 2.5E-28 156.4 13.8 142 6-151 22-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 2E-24 4.2E-29 162.8 9.4 110 2-118 10-123 (314)
22 KOG0895 Ubiquitin-conjugating 99.8 7.9E-19 1.7E-23 154.1 7.4 111 6-119 854-973 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 3.9E-16 8.5E-21 137.3 10.5 111 5-118 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.7 3.7E-16 7.9E-21 108.3 7.9 113 5-118 7-124 (138)
25 KOG0897 Predicted ubiquitin-co 99.0 1.2E-09 2.5E-14 74.0 5.6 93 54-147 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 5.2E-08 1.1E-12 69.0 7.1 67 50-117 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.3 2.3E-06 5.1E-11 59.7 6.6 78 34-117 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.0 7.4E-06 1.6E-10 57.8 3.4 93 5-108 26-135 (161)
29 KOG3357 Uncharacterized conser 97.4 0.00038 8.3E-09 48.5 4.9 89 5-107 29-137 (167)
30 KOG2391 Vacuolar sorting prote 97.3 0.0029 6.2E-08 51.0 9.6 82 33-120 51-140 (365)
31 PF05773 RWD: RWD domain; Int 96.9 0.0043 9.4E-08 41.7 6.6 69 6-77 4-74 (113)
32 smart00591 RWD domain in RING 96.2 0.039 8.5E-07 36.6 7.5 25 51-75 40-64 (107)
33 PF14462 Prok-E2_E: Prokaryoti 96.1 0.11 2.3E-06 36.3 9.1 88 24-116 13-120 (122)
34 PF14457 Prok-E2_A: Prokaryoti 95.7 0.02 4.4E-07 41.9 4.4 62 56-118 57-127 (162)
35 PF09765 WD-3: WD-repeat regio 93.1 0.29 6.3E-06 39.2 5.9 86 6-117 102-188 (291)
36 KOG4018 Uncharacterized conser 88.9 1.8 4E-05 32.9 6.3 61 7-72 6-69 (215)
37 KOG0309 Conserved WD40 repeat- 85.4 4.4 9.5E-05 36.6 7.4 67 6-76 423-491 (1081)
38 PF06113 BRE: Brain and reprod 79.1 6.6 0.00014 32.0 5.8 28 51-79 305-332 (333)
39 cd00421 intradiol_dioxygenase 68.0 8.6 0.00019 27.4 3.7 25 51-75 65-90 (146)
40 cd03457 intradiol_dioxygenase_ 65.8 9.6 0.00021 28.5 3.7 25 51-75 86-110 (188)
41 PF14460 Prok-E2_D: Prokaryoti 61.5 20 0.00043 26.4 4.6 41 74-118 89-133 (175)
42 smart00340 HALZ homeobox assoc 60.2 12 0.00026 21.0 2.5 16 5-20 21-36 (44)
43 KOG0662 Cyclin-dependent kinas 59.8 11 0.00023 28.7 2.9 57 66-122 167-226 (292)
44 cd03459 3,4-PCD Protocatechuat 59.0 16 0.00034 26.6 3.7 25 51-75 72-101 (158)
45 PF06113 BRE: Brain and reprod 58.7 32 0.00069 28.2 5.7 42 34-81 53-95 (333)
46 TIGR03737 PRTRC_B PRTRC system 55.7 22 0.00047 27.6 4.1 41 75-120 131-175 (228)
47 PRK11700 hypothetical protein; 54.9 54 0.0012 24.6 5.9 71 34-110 88-184 (187)
48 TIGR02423 protocat_alph protoc 48.9 26 0.00057 26.3 3.6 25 51-75 96-125 (193)
49 PF00845 Gemini_BL1: Geminivir 48.7 48 0.001 26.0 4.9 49 32-80 100-156 (276)
50 KOG3285 Spindle assembly check 47.6 43 0.00093 25.0 4.4 41 4-46 120-160 (203)
51 cd03463 3,4-PCD_alpha Protocat 47.2 30 0.00065 25.8 3.6 24 51-74 92-120 (185)
52 cd07981 TAF12 TATA Binding Pro 46.0 49 0.0011 20.5 4.0 43 110-153 6-48 (72)
53 KOG0177 20S proteasome, regula 38.8 14 0.0003 27.7 0.7 31 86-116 135-165 (200)
54 PF14135 DUF4302: Domain of un 38.4 1.3E+02 0.0029 23.0 6.2 67 3-83 9-100 (235)
55 KOG4445 Uncharacterized conser 37.6 42 0.00091 27.2 3.2 25 52-76 45-69 (368)
56 PF04881 Adeno_GP19K: Adenovir 36.6 39 0.00085 23.8 2.6 31 30-60 43-74 (139)
57 PF03847 TFIID_20kDa: Transcri 35.5 86 0.0019 19.3 3.8 43 110-153 4-46 (68)
58 PF03366 YEATS: YEATS family; 34.7 1.3E+02 0.0027 19.4 4.8 40 35-76 2-41 (84)
59 PF09606 Med15: ARC105 or Med1 34.7 13 0.00028 34.0 0.0 25 53-77 715-739 (799)
60 TIGR02439 catechol_proteo cate 32.7 64 0.0014 25.9 3.6 25 51-75 180-222 (285)
61 cd03461 1,2-HQD Hydroxyquinol 31.4 69 0.0015 25.5 3.6 25 51-75 172-214 (277)
62 cd03464 3,4-PCD_beta Protocate 31.4 71 0.0015 24.6 3.5 24 51-74 122-152 (220)
63 KOG1047 Bifunctional leukotrie 29.2 58 0.0013 28.7 3.0 29 47-76 248-279 (613)
64 COG0544 Tig FKBP-type peptidyl 29.1 1.5E+02 0.0033 25.2 5.5 14 53-66 210-223 (441)
65 TIGR02422 protocat_beta protoc 29.1 81 0.0018 24.2 3.5 24 51-74 117-147 (220)
66 PF12018 DUF3508: Domain of un 28.9 61 0.0013 25.7 2.9 31 121-152 236-266 (281)
67 cd03460 1,2-CTD Catechol 1,2 d 28.6 83 0.0018 25.2 3.6 25 51-75 176-218 (282)
68 TIGR02438 catachol_actin catec 28.1 87 0.0019 25.1 3.6 25 51-75 184-226 (281)
69 PF08411 Exonuc_X-T_C: Exonucl 27.1 37 0.00079 26.8 1.4 36 58-95 19-55 (269)
70 PF13950 Epimerase_Csub: UDP-g 26.8 48 0.001 19.9 1.6 17 97-113 37-53 (62)
71 TIGR03139 QueF-II 7-cyano-7-de 26.4 90 0.002 21.5 3.0 69 59-131 8-78 (115)
72 KOG2851 Eukaryotic-type DNA pr 25.9 1.9E+02 0.0041 24.2 5.2 34 81-114 331-369 (412)
73 TIGR02465 chlorocat_1_2 chloro 24.9 1.1E+02 0.0024 23.9 3.6 25 51-75 150-192 (246)
74 PF12065 DUF3545: Protein of u 23.8 55 0.0012 19.8 1.4 12 6-17 37-48 (59)
75 cd05845 Ig2_L1-CAM_like Second 23.2 2E+02 0.0043 18.8 4.2 26 49-76 16-41 (95)
76 COG3866 PelB Pectate lyase [Ca 23.1 1.6E+02 0.0034 24.1 4.2 39 36-75 198-240 (345)
77 smart00803 TAF TATA box bindin 22.8 1.9E+02 0.0041 17.5 4.0 41 111-153 8-48 (65)
78 KOG3696 Aspartyl beta-hydroxyl 21.7 67 0.0014 26.1 1.9 22 62-83 303-324 (334)
79 cd03458 Catechol_intradiol_dio 21.5 1.4E+02 0.003 23.5 3.6 25 51-75 156-198 (256)
80 PF14455 Metal_CEHH: Predicted 21.1 2.4E+02 0.0051 20.6 4.4 67 6-76 8-76 (177)
81 KOG3203 Mitochondrial/chloropl 20.3 54 0.0012 23.8 1.0 14 76-91 50-63 (165)
82 PF11745 DUF3304: Protein of u 20.2 45 0.00099 22.8 0.6 21 85-105 49-69 (118)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-58 Score=321.86 Aligned_cols=147 Identities=45% Similarity=0.827 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 83 (157)
|.+||.+|++++++++ ++||++.++++|+++|+++|.||.+|||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~RI~kE~~~l~~dp--~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDP--PPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCC--CCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC
Confidence 5679999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCC
Q 031584 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMP 154 (157)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~ 154 (157)
++|.||+|+|.+.|+|+++|.+||++|+++|.+||+++|++.++|.+| +.|+.+|+++||+||+|||+.
T Consensus 80 -~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~-k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 80 -SNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELY-KTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred -ccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHH-HhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999 889999999999999999974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-56 Score=317.41 Aligned_cols=146 Identities=45% Similarity=0.886 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCcc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 82 (157)
|.+||++|++.+++++ ++++++.+.++ |+++|+++|.||++|+|+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 6 a~~RL~kE~~~l~~~~--~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 6 ALKRLLKELKKLQKDP--PPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred HHHHHHHHHHHHhcCC--CCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 8999999999999999 99999998888 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcC
Q 031584 83 HFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 153 (157)
Q Consensus 83 ~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~ 153 (157)
| .+|.||+|+|.+.|+|+++|++||++|+++|.+||+++|+|.|||++| ..|+++|.++||+|+++||.
T Consensus 84 ~-~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~-~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 84 D-PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY-REDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred C-CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH-HhCHHHHHHHHHHHHHHhcc
Confidence 9 999999999999999999999999999999999999999999999999 78999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=8.2e-53 Score=304.64 Aligned_cols=151 Identities=41% Similarity=0.761 Sum_probs=146.0
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccC
Q 031584 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHP 80 (157)
Q Consensus 1 M~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 80 (157)
|+ +.|||++|++++++++ ++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~--~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HP 77 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDP--PPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHP 77 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCC--CCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeec
Confidence 45 6799999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCCCC
Q 031584 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPKK 156 (157)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~~~ 156 (157)
||+ .+|.||+++|.++|+|++||++||.+|+++|.+|++++|+|.+||++| .+|++.|+++||+|+++||..++
T Consensus 78 NV~-~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~-~~d~~~f~~~a~~~~~~~a~~~~ 151 (152)
T PTZ00390 78 NID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF-KNNRADAEKVAREWNQKYAKHNK 151 (152)
T ss_pred eEC-CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HHCHHHHHHHHHHHHHHHhcccC
Confidence 999 799999999999999999999999999999999999999999999999 88999999999999999998653
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.2e-52 Score=299.13 Aligned_cols=146 Identities=40% Similarity=0.783 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 83 (157)
|.+||++|++++++++ ++++++.+.++|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 a~~Rl~kE~~~l~~~~--~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDP--PSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCC--CCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC
Confidence 4699999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcC
Q 031584 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 153 (157)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~ 153 (157)
.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++| .+|+++|+++||+|+++||.
T Consensus 80 -~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~-~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 80 -SNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF-KENRSRYEATAREWTQRYAT 147 (147)
T ss_pred -CCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HHCHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999 88999999999999999984
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-52 Score=285.53 Aligned_cols=147 Identities=39% Similarity=0.815 Sum_probs=142.7
Q ss_pred Cch-HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeecccc
Q 031584 1 MQA-SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79 (157)
Q Consensus 1 M~~-~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 79 (157)
|++ |.|||++|++.+++++ +.|++..|.++|+++|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++++||
T Consensus 1 MstpArrrLmrDfkrlqedp--p~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDP--PAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCC--CCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 775 7899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHH
Q 031584 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLA 151 (157)
Q Consensus 80 Pni~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~ 151 (157)
|||+ .+|.+|+|+|...|+|+|++..||.+||+||.+||+++|+|.+||++| .+|+.+|.+++|+.+.+.
T Consensus 79 PNvy-a~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf-~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 79 PNVY-ADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF-SENKREYERRVKETVEQS 148 (152)
T ss_pred CCcC-CCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH-hhChHHHHHHHHHHHHHh
Confidence 9998 889999999999999999999999999999999999999999999999 899999999999988763
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-47 Score=275.59 Aligned_cols=154 Identities=38% Similarity=0.680 Sum_probs=148.2
Q ss_pred CchHHHHHHHHHHHHHhcCC-CCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeecccc
Q 031584 1 MQASRARLFKEYKEVQREKS-ADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79 (157)
Q Consensus 1 M~~~~~Rl~~E~~~l~~~~~-~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 79 (157)
|+.+.+||++|++++.+++. ...|+.++..++|+.+.++.|.||+||||+||+|.+.|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 77799999999999999883 25789999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCCC
Q 031584 80 PNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 155 (157)
Q Consensus 80 Pni~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~~ 155 (157)
|||...+|.||+|+|.+.|++++||+++|++||++|..|++.+|.+...|++| .++++.|.+.||.|+..||.++
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy-~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQY-VDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHH-hhhHHHHHHHHHHHHHHHhCCC
Confidence 99998899999999999999999999999999999999999999999999999 9999999999999999999873
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-47 Score=266.58 Aligned_cols=144 Identities=34% Similarity=0.692 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEec-CCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCcc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCD-DSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 82 (157)
|..-|+++|++|++++ .+|+++... +.|+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|.|+||||||
T Consensus 6 a~~ll~~qlk~L~~~p--v~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEP--VEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCC--CCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 5577899999999999 999999954 5599999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeeccCCC-------------CCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHH
Q 031584 83 HFKTGEICLDILK-------------NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTR 149 (157)
Q Consensus 83 ~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~ 149 (157)
+ ++|.+|++||. +.|.|..|+++||++|.+||.+||.++|+|.|||+.+ ++++++|.++++++|+
T Consensus 84 y-~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~-Ren~~EykkkV~r~vr 161 (171)
T KOG0425|consen 84 Y-EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW-RENPEEYKKKVRRCVR 161 (171)
T ss_pred C-CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH-hhCHHHHHHHHHHHHH
Confidence 8 99999999997 3599999999999999999999999999999999999 8899999999999998
Q ss_pred HH
Q 031584 150 LA 151 (157)
Q Consensus 150 k~ 151 (157)
+.
T Consensus 162 ~s 163 (171)
T KOG0425|consen 162 RS 163 (171)
T ss_pred HH
Confidence 74
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-45 Score=252.74 Aligned_cols=149 Identities=29% Similarity=0.565 Sum_probs=141.8
Q ss_pred Cc-hHHHHHHHHHHHHHhcCCCCCCeEEEecC-----CCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEe
Q 031584 1 MQ-ASRARLFKEYKEVQREKSADPDIQLVCDD-----SNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFL 74 (157)
Q Consensus 1 M~-~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 74 (157)
|| .++.||+.|-+.+.++. +-|+.+.|.. .|++.|.+.|.|++||+|+||.|.+++.||++||.+||+++|.
T Consensus 1 ~s~~~~~rl~eErk~wrk~h--p~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDH--PFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred CcchHHHHHHHHHHHHhhcC--CCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 56 47899999999999999 9999998643 4789999999999999999999999999999999999999999
Q ss_pred eccccCccccCCCeeeccCCCCC--CCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHc
Q 031584 75 TKIFHPNVHFKTGEICLDILKNA--WSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 152 (157)
Q Consensus 75 t~i~HPni~~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a 152 (157)
+++|||||+ .+|.|||++|.++ |+|+.||.+||..|+.||.+||+.+|+|.||...| ..|+.+|+++||.++++||
T Consensus 79 ~pl~HPNVy-psgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~-~~~r~eYekrvr~qak~~a 156 (158)
T KOG0424|consen 79 PPLFHPNVY-PSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY-CQDRAEYEKRVRAQAKEYA 156 (158)
T ss_pred CCCcCCCcC-CCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH-hhCHHHHHHHHHHHHHHhc
Confidence 999999998 8999999999965 99999999999999999999999999999999999 8999999999999999998
Q ss_pred C
Q 031584 153 M 153 (157)
Q Consensus 153 ~ 153 (157)
.
T Consensus 157 ~ 157 (158)
T KOG0424|consen 157 K 157 (158)
T ss_pred c
Confidence 5
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.9e-45 Score=261.12 Aligned_cols=138 Identities=44% Similarity=0.915 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccccC
Q 031584 7 RLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (157)
Q Consensus 7 Rl~~E~~~l~~~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 85 (157)
||++|++++++++ +.|+.+.+.++ |+.+|+++|.||++|+|+||.|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 1 Rl~~E~~~l~~~~--~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~ 77 (140)
T PF00179_consen 1 RLQKELKELQKNP--PPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-E 77 (140)
T ss_dssp HHHHHHHHHHHSH--TTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--T
T ss_pred CHHHHHHHHhhCC--CCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-c
Confidence 9999999999999 99999998886 999999999999999999999999999999999999999999999999999 9
Q ss_pred CCeeeccCCCC-CCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHH
Q 031584 86 TGEICLDILKN-AWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYT 148 (157)
Q Consensus 86 ~G~icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~ 148 (157)
+|.||+++|.. .|+|+++|.+||.+|+++|.+|+.++++|.+|+++| .+|+++|.++||+|.
T Consensus 78 ~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~-~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 78 NGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELY-KNDREEFEKKAREWA 140 (140)
T ss_dssp TSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHH-HHCHHHHHHHHHHH-
T ss_pred cccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHH-HHCHHHHHHHHHHcC
Confidence 99999999985 599999999999999999999999999999999999 889999999999984
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.1e-44 Score=258.20 Aligned_cols=139 Identities=43% Similarity=0.893 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccccC
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 85 (157)
|||++|++++++++ ++|+++.++++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 2 ~Rl~~E~~~l~~~~--~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~ 78 (141)
T cd00195 2 KRLQKELKDLKKDP--PSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-E 78 (141)
T ss_pred chHHHHHHHHHhCC--CCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-C
Confidence 79999999999999 89999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCeeeccCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHH
Q 031584 86 TGEICLDILKNA-WSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYT 148 (157)
Q Consensus 86 ~G~icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~ 148 (157)
+|.||+++|..+ |+|++++.+||.+|+++|.+|+.++|+|.+||++| .+|+++|+++|++|+
T Consensus 79 ~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~-~~~~~~f~~~~~~~~ 141 (141)
T cd00195 79 NGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLY-KENREEFKKKAREWT 141 (141)
T ss_pred CCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH-HHCHHHHHHHHHHhC
Confidence 999999999977 99999999999999999999999999999999999 889999999999975
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-45 Score=253.11 Aligned_cols=142 Identities=36% Similarity=0.717 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 83 (157)
..|||++||..|+-.. .+||++.|++||++.|.++|.||++|+|+|-.|++.+.||.+||+.||.|+|+|+.||||||
T Consensus 30 V~KRLq~ELm~Lmms~--~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD 107 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSN--TPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD 107 (175)
T ss_pred HHHHHHHHHHHHHhcC--CCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence 4799999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHH
Q 031584 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRL 150 (157)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k 150 (157)
..|.||+|+|.+.|+..|++++||++||++|-+||.++|+|..||+++ . |.++|++.+.+.-++
T Consensus 108 -~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW-~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 108 -LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELW-S-DQEEYKKYLEALYKE 171 (175)
T ss_pred -ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHh-c-CHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999 4 999999998877655
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=246.83 Aligned_cols=148 Identities=32% Similarity=0.703 Sum_probs=140.6
Q ss_pred Cc-hHHHHHHHHHHHHHhcCCCCCCeEEEe-cCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccc
Q 031584 1 MQ-ASRARLFKEYKEVQREKSADPDIQLVC-DDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIF 78 (157)
Q Consensus 1 M~-~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 78 (157)
|+ +|+|||++||++|-.++ ++|+.+.| +++|.++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+|
T Consensus 1 m~~~AlkRLm~EykqLt~~~--P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNP--PEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred CchhHHHHHHHHHHHHccCC--CCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 44 58999999999999999 99999996 4678999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCeeeccCCC-------------CCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHH
Q 031584 79 HPNVHFKTGEICLDILK-------------NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMAR 145 (157)
Q Consensus 79 HPni~~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~ 145 (157)
||||+ .+|.+|+++|. +.|+|..+++.||+++.+||.+||.++++|.+|+.++ ++|+++|++.||
T Consensus 79 HPNiy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mW-Re~R~ef~~i~~ 156 (165)
T KOG0426|consen 79 HPNIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMW-REDREEFEKIAK 156 (165)
T ss_pred cCccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHH-HHhHHHHHHHHH
Confidence 99998 89999999996 3699999999999999999999999999999999999 899999999999
Q ss_pred HHHHHHc
Q 031584 146 MYTRLAA 152 (157)
Q Consensus 146 ~~~~k~a 152 (157)
..++|.-
T Consensus 157 ~lvrKtL 163 (165)
T KOG0426|consen 157 RLVRKTL 163 (165)
T ss_pred HHHHHhh
Confidence 9999853
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1e-43 Score=255.65 Aligned_cols=143 Identities=48% Similarity=0.900 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCC-CcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCcccc
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDS-NIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHF 84 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 84 (157)
+||++|++++++++ ++|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus 1 ~Rl~~E~~~~~~~~--~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~- 77 (145)
T smart00212 1 KRLLKELKELLKDP--PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD- 77 (145)
T ss_pred ChHHHHHHHHHhCC--CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-
Confidence 59999999999999 88999988765 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCCC-CCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHc
Q 031584 85 KTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 152 (157)
Q Consensus 85 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a 152 (157)
.+|.||++.|. ++|+|++++.+||.+|+++|.+|+.++++|.+||++| .++++.|+++|+++++||+
T Consensus 78 ~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~-~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 78 SSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLY-KKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHCHHHHHHHHHHHHHHhC
Confidence 69999999998 8999999999999999999999999999999999999 8899999999999999985
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=240.35 Aligned_cols=148 Identities=36% Similarity=0.726 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCe-EEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCc
Q 031584 3 ASRARLFKEYKEVQREKSADPDI-QLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPN 81 (157)
Q Consensus 3 ~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 81 (157)
.|.+||++|+.++++++ ...+ .+..++.|++.|++.|. |++-||..|.|.++|.||.+|||.||+|.|.|+|||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~--~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNK--MKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred chhHHHHHHHHHHHhcc--HHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 37899999999999999 5555 35577889999999999 89999999999999999999999999999999999999
Q ss_pred cccCCCeeeccCCC-CCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCCC
Q 031584 82 VHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 155 (157)
Q Consensus 82 i~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~~ 155 (157)
|| +.|.+|+.++. ++|.|++++++||.+|.+++.+|+++.|++.|+|..| ..|+..|.++|.+||+||+...
T Consensus 79 VD-e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey-~~d~~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 79 VD-EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEY-IKDPKKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred CC-CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHH-HHCHHHHHHhHHHHHHHhcCcC
Confidence 99 78999999997 8999999999999999999999999999999999999 8999999999999999999753
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=242.44 Aligned_cols=149 Identities=27% Similarity=0.660 Sum_probs=140.8
Q ss_pred CchHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccC
Q 031584 1 MQASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHP 80 (157)
Q Consensus 1 M~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 80 (157)
|+.+.|||..|...|.... ..+...++++.+++|.+.||.+|+|+||+++++|.+|++||++.|+|.|+++||||
T Consensus 1 ms~~~rRid~Dv~KL~~s~-----yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSD-----YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred CCCcccchhhHHHHHHhcC-----CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 7888999999998886544 66888899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeeeccCCCCCCCCCCCHHHHHHH-HHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCCC
Q 031584 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRA-IIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 155 (157)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~~ 155 (157)
|||..+|.||+|.+...|+|.+.+..|+.. |-.||..||+.+|+|-|||.+| ..++++|++++|++++|||++.
T Consensus 76 NIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~-l~~~~~Y~~~v~eY~~kYA~~~ 150 (189)
T KOG0416|consen 76 NIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALY-LRDPEEYEEKVKEYIKKYATPE 150 (189)
T ss_pred CchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHH-hcCHHHHHHHHHHHHHHhcChh
Confidence 999889999999999999999999999965 7789999999999999999999 8999999999999999999975
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-38 Score=228.23 Aligned_cols=147 Identities=32% Similarity=0.646 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCeEEE--ecCCCcc--eEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeecc
Q 031584 2 QASRARLFKEYKEVQREKSADPDIQLV--CDDSNIF--KWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI 77 (157)
Q Consensus 2 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~--~~~~n~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 77 (157)
+.|.-||++|+.++.-- +++++. ...+++. +++++|. |+.+.|+||.|.|.+.+|+.||+.||+|+++|+|
T Consensus 27 s~a~lrl~~di~elnLp----~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV 101 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLP----PTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV 101 (184)
T ss_pred cHHHHHHHhhhhhccCC----CccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence 35678888888887544 455543 2234444 5999999 9999999999999999999999999999999999
Q ss_pred ccCccccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCCC
Q 031584 78 FHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 155 (157)
Q Consensus 78 ~HPni~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~~ 155 (157)
|||||| .+|.||+++|.++|+|+.+|.+|+.+|+.++.+|+++||+|.|||+++ ..|++.|+.+||...+.++.++
T Consensus 102 ~HPNId-~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l-~~n~e~F~~~Vr~~m~gg~v~~ 177 (184)
T KOG0420|consen 102 YHPNID-LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVL-KSNREGFENNVRRAMSGGCVGQ 177 (184)
T ss_pred ccCCcC-CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHH-HhCHHHHHHHHHHHHhcCccCc
Confidence 999999 999999999999999999999999999999999999999999999999 8999999999999988877653
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-37 Score=219.06 Aligned_cols=147 Identities=36% Similarity=0.696 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccc
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~ 83 (157)
.+|-+.+|++.+...| ++||.|.+.++|+....+.|.||.||||++|.|..++.+..+||.+||+-.|+|+||||||-
T Consensus 11 vik~~~kEl~~l~~~P--PdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESP--PDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred HHHHHHHHHHhcccCC--CCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 4688999999999999 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcCC
Q 031584 84 FKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMP 154 (157)
Q Consensus 84 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~~ 154 (157)
.||.||.+.|..+|+|.+.|+.||+.|+++|..|++++.+|.+|++++ .++.++|.+.||.++.-+|.+
T Consensus 89 -aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmL-LEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 89 -ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKML-LENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred -cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHH-HHhHHHHHHHHHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999 899999999999999999987
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=193.67 Aligned_cols=114 Identities=34% Similarity=0.679 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeecc-ccC
Q 031584 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI-FHP 80 (157)
Q Consensus 2 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 80 (157)
..|++||+|||.+++.++ +.|+... ..+|+.+|.+.+.|.+||.|+|.+|++.+.||+.||++.|.|.|..++ .||
T Consensus 14 ~~at~RLqKEl~e~q~~p--P~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNP--PTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHHHhcCC--CCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 368899999999999999 9999988 678999999999999999999999999999999999999999999998 899
Q ss_pred ccccCCCeeeccCCCCCCCCCCCHHHHHHHHHHHhcCCC
Q 031584 81 NVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPE 119 (157)
Q Consensus 81 ni~~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~ 119 (157)
+|+ +||.||+|+|.++|+|++++.+|.++|.+||.+-.
T Consensus 91 HiY-SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~ 128 (161)
T KOG0427|consen 91 HIY-SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSK 128 (161)
T ss_pred cee-cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCc
Confidence 998 99999999999999999999999999999999864
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=187.64 Aligned_cols=112 Identities=32% Similarity=0.796 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCcc
Q 031584 3 ASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNV 82 (157)
Q Consensus 3 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni 82 (157)
.|.|||++||+.|+++| .+++.+.|.++|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|++.| ||-
T Consensus 5 ~a~kRl~keY~~l~k~P--v~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----PNG 78 (244)
T KOG0894|consen 5 AAVKRLQKEYRALCKDP--VPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----PNG 78 (244)
T ss_pred HHHHHHHHHHHHHHhCC--chhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----CCC
Confidence 47899999999999999 999999999999999999999999999999999999999999999999999999 776
Q ss_pred ccC-CCeeeccCCC---CCCCCCCCHHHHHHHHHHHhcCCCC
Q 031584 83 HFK-TGEICLDILK---NAWSPAWTLQSVCRAIIALMAHPEP 120 (157)
Q Consensus 83 ~~~-~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p~~ 120 (157)
.+. |-++||++.+ +.|+|.|++.+||.+|.++|.+..+
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 544 5679998876 8999999999999999999988765
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=156.41 Aligned_cols=142 Identities=23% Similarity=0.379 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCC--CCCCeeEEeeccccCccc
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYP--LQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP--~~pP~v~f~t~i~HPni~ 83 (157)
..|+.||..+.+.+ -+|+++.|+-.|-+.|.++|++ ..++|.||+|.|+|.+|++|| ..-|+|.|.+.++||+|.
T Consensus 22 y~llAEf~lV~~ek--L~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic 98 (258)
T KOG0429|consen 22 YALLAEFVLVCREK--LDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHhcc--CCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence 46889999999999 8999999999999999999996 556899999999999999999 589999999999999999
Q ss_pred cCCCeeeccCCCCCCCC-CCCHHHHHHHHHHHhcCCCCCCC-c-chhHHHHHHhCCHHHHHHHHHHHHHHH
Q 031584 84 FKTGEICLDILKNAWSP-AWTLQSVCRAIIALMAHPEPDSP-L-NCDSGNLLRSGDIRGFQSMARMYTRLA 151 (157)
Q Consensus 84 ~~~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~~-~-n~~a~~~~~~~~~~~f~~~a~~~~~k~ 151 (157)
+.++.+|++-....|.- ..+|.++|..||..+.+|+.+.+ + |++|+.+| .+++++|.++|+++++.+
T Consensus 99 p~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~-~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 99 PKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY-KKHRDEFRERVQECVKAS 168 (258)
T ss_pred CCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 99999999888777976 57899999999999999988765 4 99999999 899999999999999864
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=162.85 Aligned_cols=110 Identities=32% Similarity=0.745 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCc
Q 031584 2 QASRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPN 81 (157)
Q Consensus 2 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 81 (157)
+.|.|||++|-++++ +| .+.+...|.+||+++|+++|.||.+|-|+||+||.+|.||.+||++||.+-.+| ||
T Consensus 10 npaVkRlmkEa~El~-~P--td~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pN 82 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DP--TDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PN 82 (314)
T ss_pred CHHHHHHHHHHHHhc-Cc--hhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CC
Confidence 358899999999997 77 677888899999999999999999999999999999999999999999999999 77
Q ss_pred cccC-CCeeeccCCC---CCCCCCCCHHHHHHHHHHHhcCC
Q 031584 82 VHFK-TGEICLDILK---NAWSPAWTLQSVCRAIIALMAHP 118 (157)
Q Consensus 82 i~~~-~G~icl~~l~---~~W~p~~~i~~il~~i~~ll~~p 118 (157)
-.++ |-+||+++.. +.|.|+|+|++.|..|..+|-..
T Consensus 83 GRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~ 123 (314)
T KOG0428|consen 83 GRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTK 123 (314)
T ss_pred CceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCC
Confidence 7655 5679999987 78999999999999999988653
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.9e-19 Score=154.05 Aligned_cols=111 Identities=27% Similarity=0.566 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeec--cccCccc
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK--IFHPNVH 83 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPni~ 83 (157)
+..+.|++.+..+. +.|+.+...++.+....+.|.|+.+|||.+|.|.|.|.||.+||.+||.+...+. .++||.+
T Consensus 854 ~~~~~~~~~~~~~~--~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly 931 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSL--PSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY 931 (1101)
T ss_pred HHHHHHHHhhhccC--CCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc
Confidence 44566778887777 9999999999988888999999999999999999999999999999999999886 5899998
Q ss_pred cCCCeeeccCCC-------CCCCCCCCHHHHHHHHHHHhcCCC
Q 031584 84 FKTGEICLDILK-------NAWSPAWTLQSVCRAIIALMAHPE 119 (157)
Q Consensus 84 ~~~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~p~ 119 (157)
++|++|+++|. +-|+|+.++.++|.+||.|+....
T Consensus 932 -~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~ 973 (1101)
T KOG0895|consen 932 -EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEE 973 (1101)
T ss_pred -cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccc
Confidence 99999999997 459999999999999999987654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-16 Score=137.32 Aligned_cols=111 Identities=32% Similarity=0.623 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeec---cccCc
Q 031584 5 RARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK---IFHPN 81 (157)
Q Consensus 5 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPn 81 (157)
.+|+++|++.+.++. ++|+.+.+.+..+...++.|.||.+|||++|.|.|.|.||..||..||++.++|. .+.||
T Consensus 284 skrv~ke~~llskdl--pEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDL--PEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred HHHHHHHhhhhcccC--CCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 589999999999999 9999999999999999999999999999999999999999999999999999988 58999
Q ss_pred cccCCCeeeccCCC-------CCCCCC-CCHHHHHHHHHHHhcCC
Q 031584 82 VHFKTGEICLDILK-------NAWSPA-WTLQSVCRAIIALMAHP 118 (157)
Q Consensus 82 i~~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~p 118 (157)
.+ .+|+||+++|. +.|+|. .+|.++|.+|+.++..-
T Consensus 362 lY-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LY-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cc-cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 98 79999999986 569998 89999999999998765
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.7e-16 Score=108.26 Aligned_cols=113 Identities=27% Similarity=0.459 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCC-C--cceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCc
Q 031584 5 RARLFKEYKEVQREKSADPDIQLVCDDS-N--IFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPN 81 (157)
Q Consensus 5 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~-n--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 81 (157)
-.||.+|+.+-++..+ +..++....++ | +..|.++|.||+.|+||+.+|.++|...++||..||.|+|.|++--+.
T Consensus 7 nfrlleele~g~kg~g-~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIG-DGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred chhhhhhhcccccccc-CceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 4688999988877663 44455554333 3 568999999999999999999999999999999999999999999999
Q ss_pred cccCCCeeeccCCC--CCCCCCCCHHHHHHHHHHHhcCC
Q 031584 82 VHFKTGEICLDILK--NAWSPAWTLQSVCRAIIALMAHP 118 (157)
Q Consensus 82 i~~~~G~icl~~l~--~~W~p~~~i~~il~~i~~ll~~p 118 (157)
|+..+|.+.-..+. .+|.-.++++.+|..++.+|...
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~ 124 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSK 124 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHhhhHHHHHH
Confidence 99889998865444 78999999999999999766543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-09 Score=73.97 Aligned_cols=93 Identities=23% Similarity=0.434 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCCCCCCeeEEeeccccCccccCCCeeeccCCC-CCCCCCCCHHHHHHHHHHHhcCCC--CCCCcchhHHH
Q 031584 54 FQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILK-NAWSPAWTLQSVCRAIIALMAHPE--PDSPLNCDSGN 130 (157)
Q Consensus 54 f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~--~~~~~n~~a~~ 130 (157)
..+.+.|+++||+.||.++...++-.-.-.-.+|.||+.+|. ++|+.+++|+.++.+|..++.... +..+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 456788999999999999999866544444468999999998 789999999999999999999885 5667766544
Q ss_pred HH-HhCCHHHHHHHHHHH
Q 031584 131 LL-RSGDIRGFQSMARMY 147 (157)
Q Consensus 131 ~~-~~~~~~~f~~~a~~~ 147 (157)
+| +..--+.|++.++..
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 44 122334455444443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.72 E-value=5.2e-08 Score=69.04 Aligned_cols=67 Identities=27% Similarity=0.675 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeCCCCCCCCCeeEEeecc---ccCccccCCCeeec---cCCCCCCCCCCCHHHHHHHHHHHhcC
Q 031584 50 EGGVFQLAFAVPEQYPLQPPQVRFLTKI---FHPNVHFKTGEICL---DILKNAWSPAWTLQSVCRAIIALMAH 117 (157)
Q Consensus 50 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPni~~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 117 (157)
.|+.+.+.|.||++||..||.|....+- +-|||+ .+|.+|+ ...-+.|.|.-.+.++|..++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988654 689998 6999999 77778999999999999999999884
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.31 E-value=2.3e-06 Score=59.66 Aligned_cols=78 Identities=23% Similarity=0.498 Sum_probs=52.8
Q ss_pred cceEEEEEECCCCCCCCCCeEE--EEEEeCCCCCCCCCeeEEeecc-----ccCccccCCCeeeccCCCCCCCC-CCCHH
Q 031584 34 IFKWTALIKGPSETPYEGGVFQ--LAFAVPEQYPLQPPQVRFLTKI-----FHPNVHFKTGEICLDILKNAWSP-AWTLQ 105 (157)
Q Consensus 34 ~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPni~~~~G~icl~~l~~~W~p-~~~i~ 105 (157)
+....++|. -.|+|..|. +.|-+|.+||.+||.+...... -+.+|| .+|.|.+..| ++|++ ..+|.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCHH
Confidence 455556654 247777774 6788999999999999876442 244999 8999998888 56887 88888
Q ss_pred HHHHHHHHHhcC
Q 031584 106 SVCRAIIALMAH 117 (157)
Q Consensus 106 ~il~~i~~ll~~ 117 (157)
+++..++..+..
T Consensus 106 ~lv~~l~~~F~~ 117 (121)
T PF05743_consen 106 DLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHHHHhH
Confidence 888888876653
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.97 E-value=7.4e-06 Score=57.83 Aligned_cols=93 Identities=23% Similarity=0.450 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHh----cCCC-CCCeEEEecCCCcceEEEEEECCCCCCCCC--CeEEEEEEeCCCCCCCCCeeEEeecc
Q 031584 5 RARLFKEYKEVQR----EKSA-DPDIQLVCDDSNIFKWTALIKGPSETPYEG--GVFQLAFAVPEQYPLQPPQVRFLTKI 77 (157)
Q Consensus 5 ~~Rl~~E~~~l~~----~~~~-~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~v~f~t~i 77 (157)
..||..||..|-+ +..+ .+.|.++ ++.+=+.|.+.-.- .++- -.|.+++.+|..||..||.|..
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~l---- 96 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIAL---- 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-----
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceec----
Confidence 4899999998744 2211 4566666 33344556553320 1111 2466778889999999999976
Q ss_pred ccCccc------cCCCeeeccCCC-CCC---CCCCCHHHHH
Q 031584 78 FHPNVH------FKTGEICLDILK-NAW---SPAWTLQSVC 108 (157)
Q Consensus 78 ~HPni~------~~~G~icl~~l~-~~W---~p~~~i~~il 108 (157)
|-.| +.+|+||++.-. .-| .|.++|...|
T Consensus 97 --PeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 97 --PELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp --GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred --cccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 3333 368999998876 335 6777877665
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00038 Score=48.55 Aligned_cols=89 Identities=26% Similarity=0.553 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCe----------EEEEEEeCCCCCCCCCeeEEe
Q 031584 5 RARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGV----------FQLAFAVPEQYPLQPPQVRFL 74 (157)
Q Consensus 5 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~v~f~ 74 (157)
.+||..||+.+-....+ ..++-..|.-.-..+.||.|-|.+ |.+++.+|..||..+|.|..
T Consensus 29 vqrlkeey~sli~yvqn--------nk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial- 99 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYVQN--------NKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL- 99 (167)
T ss_pred HHHHHHHHHHHHHHHHh--------CcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc-
Confidence 58999999988543310 111222333333446677676643 66777889999999998865
Q ss_pred eccccCccc------cCCCeeeccCCC-CCCC---CCCCHHHH
Q 031584 75 TKIFHPNVH------FKTGEICLDILK-NAWS---PAWTLQSV 107 (157)
Q Consensus 75 t~i~HPni~------~~~G~icl~~l~-~~W~---p~~~i~~i 107 (157)
|-+| +.+|+||+.--. .-|. |...|...
T Consensus 100 -----peldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 100 -----PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred -----cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 5444 368999986554 4464 45555544
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0029 Score=50.97 Aligned_cols=82 Identities=24% Similarity=0.525 Sum_probs=62.4
Q ss_pred CcceEEEEEECCCCCCCCCCeEE--EEEEeCCCCCCCCCeeEEeec----c-ccCccccCCCeeeccCCCCCCCC-CCCH
Q 031584 33 NIFKWTALIKGPSETPYEGGVFQ--LAFAVPEQYPLQPPQVRFLTK----I-FHPNVHFKTGEICLDILKNAWSP-AWTL 104 (157)
Q Consensus 33 n~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~----i-~HPni~~~~G~icl~~l~~~W~p-~~~i 104 (157)
+++...++|. .+|.|.+|. +.|-+.+.||..||.+..... | -|-||| .+|.|.|..|. +|.| +++|
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdL 124 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDL 124 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchH
Confidence 3555555554 467777776 566799999999999866532 1 489999 89999999995 4866 7788
Q ss_pred HHHHHHHHHHhcCCCC
Q 031584 105 QSVCRAIIALMAHPEP 120 (157)
Q Consensus 105 ~~il~~i~~ll~~p~~ 120 (157)
..++..+.+.+.++.+
T Consensus 125 v~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 125 VGLIQELIAAFSEDPP 140 (365)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 8998888888887653
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.94 E-value=0.0043 Score=41.70 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEEC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeecc
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKG--PSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKI 77 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 77 (157)
.+...|+..|+.-- +..+ ......+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIY--PDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHS--SSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHc--CCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 46678888887766 4444 22334445566666632 2344445668999999999999999999987644
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.22 E-value=0.039 Score=36.64 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCCCCCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYPLQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~v~f~t 75 (157)
.-.+.+.+.||.+||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 4568999999999999999998865
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.07 E-value=0.11 Score=36.30 Aligned_cols=88 Identities=20% Similarity=0.416 Sum_probs=57.8
Q ss_pred CeEEEecCCCcceEEEEEEC--CCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccccCC-Cee--eccCCC---
Q 031584 24 DIQLVCDDSNIFKWTALIKG--PSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKT-GEI--CLDILK--- 95 (157)
Q Consensus 24 ~~~~~~~~~n~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~-G~i--cl~~l~--- 95 (157)
|+..+...+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|-+-+.. |.+...+ |.| |-+...
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~----P~L~~~~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVY----PPLKLADGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEEC----CceEccCCCcCCchhcchhhcC
Confidence 5666755555555655 554 46777999999999999999999999887765 3332223 333 433221
Q ss_pred -----------CCCCCCC-CHHHHHHHHHHHhc
Q 031584 96 -----------NAWSPAW-TLQSVCRAIIALMA 116 (157)
Q Consensus 96 -----------~~W~p~~-~i~~il~~i~~ll~ 116 (157)
..|.|.. +|.+.|..|...|.
T Consensus 88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 3477754 57777777776553
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.67 E-value=0.02 Score=41.88 Aligned_cols=62 Identities=24% Similarity=0.500 Sum_probs=49.5
Q ss_pred EEEEeCCCCCCCCCeeEEeeccc---cCccccCC-----CeeeccCCC-CCCCCCCCHHHHHHHHHHHhcCC
Q 031584 56 LAFAVPEQYPLQPPQVRFLTKIF---HPNVHFKT-----GEICLDILK-NAWSPAWTLQSVCRAIIALMAHP 118 (157)
Q Consensus 56 ~~i~fp~~YP~~pP~v~f~t~i~---HPni~~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p 118 (157)
+.|.|+.+||..+|.|.++-+.| +||++ .. ..+|+.--. .+|.+..++..+|..|..-|..-
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~-~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~a 127 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQN-PGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRDA 127 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccC-CCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHHH
Confidence 56899999999999887776653 57776 34 679986555 67999999999999999887653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.10 E-value=0.29 Score=39.16 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeeccccCccccC
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFK 85 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 85 (157)
.+|.+|+.++..+. .+.+. .++++...++.+.. +.....++|.+|.+||.++|.+...-+ ....
T Consensus 102 s~ll~EIe~IGW~k----l~~i~-~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P-~~~~---- 165 (291)
T PF09765_consen 102 SNLLKEIEAIGWDK----LVQIQ-FDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLP-IPFS---- 165 (291)
T ss_dssp -CHHHHHHHHHCGC----CEEEE-E-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TT-S-HH----
T ss_pred HHHHHHHHHhcccc----ceEEe-cCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCC-cchh----
Confidence 67889999987777 33332 35678888888873 125788999999999999996432211 1112
Q ss_pred CCeeeccCCCCCCCC-CCCHHHHHHHHHHHhcC
Q 031584 86 TGEICLDILKNAWSP-AWTLQSVCRAIIALMAH 117 (157)
Q Consensus 86 ~G~icl~~l~~~W~p-~~~i~~il~~i~~ll~~ 117 (157)
..|.+ ..++.+++...+..+..
T Consensus 166 ----------~~w~~~~ssL~~v~~qF~~~le~ 188 (291)
T PF09765_consen 166 ----------LSWSPSQSSLKDVVQQFQEALES 188 (291)
T ss_dssp ----------HHHHCHT-SHHHHHHHHHHHHHH
T ss_pred ----------hhhcccccCHHHHHHHHHHHHHH
Confidence 24888 78899888877766654
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=88.90 E-value=1.8 Score=32.91 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCCCCe-EEEecCCCcceEEEEEECCCCCCCCC--CeEEEEEEeCCCCCCCCCeeE
Q 031584 7 RLFKEYKEVQREKSADPDI-QLVCDDSNIFKWTALIKGPSETPYEG--GVFQLAFAVPEQYPLQPPQVR 72 (157)
Q Consensus 7 Rl~~E~~~l~~~~~~~~~~-~~~~~~~n~~~w~~~i~gp~~t~y~g--g~f~~~i~fp~~YP~~pP~v~ 72 (157)
-...|+..|...- +.-+ .+. +.+...+.++|. ...+-+.. +.+.+.+.++.+||.++|.|.
T Consensus 6 eQe~E~EaLeSIY--~de~~~i~--~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 6 EQEEELEALESIY--PDEFKHIN--SEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred HHHHHHHHHHHhc--cchhhhhh--ccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCccee
Confidence 3455666666655 3333 222 122222556665 22222211 278899999999999999993
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.41 E-value=4.4 Score=36.63 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCCCCCCCC-eEEEEEEeCCCCC-CCCCeeEEeec
Q 031584 6 ARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSETPYEGG-VFQLAFAVPEQYP-LQPPQVRFLTK 76 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg-~f~~~i~fp~~YP-~~pP~v~f~t~ 76 (157)
+-|..|+.-|-.. .+++.++-.+-.-..-.+++.||-... .|- ...+.|.||.+|| ..+|+++|..+
T Consensus 423 QnLgeE~S~Ig~k---~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVK---IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhcc---ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4566676666332 345555533333445677777765443 333 3478899999999 57889988743
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=79.07 E-value=6.6 Score=32.04 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=23.3
Q ss_pred CCeEEEEEEeCCCCCCCCCeeEEeecccc
Q 031584 51 GGVFQLAFAVPEQYPLQPPQVRFLTKIFH 79 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 79 (157)
+-.|-++|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3458889999999999999999976 444
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=67.96 E-value=8.6 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=22.7
Q ss_pred CCeEEEEEEeCCCCC-CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP-LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP-~~pP~v~f~t 75 (157)
.|.|.|.-.+|-.|| ..||+|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 488999999999999 9999999964
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=65.76 E-value=9.6 Score=28.51 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.8
Q ss_pred CCeEEEEEEeCCCCCCCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYPLQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~~pP~v~f~t 75 (157)
.|.|.|.=.+|--||..+|+|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 4889999999999999999999974
No 41
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=61.55 E-value=20 Score=26.37 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=24.4
Q ss_pred eeccccC---ccccCCCeeeccCCCCCCCCCCCHHHHHHHHH-HHhcCC
Q 031584 74 LTKIFHP---NVHFKTGEICLDILKNAWSPAWTLQSVCRAII-ALMAHP 118 (157)
Q Consensus 74 ~t~i~HP---ni~~~~G~icl~~l~~~W~p~~~i~~il~~i~-~ll~~p 118 (157)
.|++||. ||. .+|.||+.... .|.......+.... .++.++
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 4556664 997 89999986643 24443344455554 445554
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=60.24 E-value=12 Score=21.03 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 031584 5 RARLFKEYKEVQREKS 20 (157)
Q Consensus 5 ~~Rl~~E~~~l~~~~~ 20 (157)
-+||++|+.+|.....
T Consensus 21 NrRL~ke~~eLralk~ 36 (44)
T smart00340 21 NRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4899999999987663
No 43
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=59.77 E-value=11 Score=28.70 Aligned_cols=57 Identities=21% Similarity=0.459 Sum_probs=47.0
Q ss_pred CCCCeeEEeeccccCccc-cCCCeeeccCCCCCC--CCCCCHHHHHHHHHHHhcCCCCCC
Q 031584 66 LQPPQVRFLTKIFHPNVH-FKTGEICLDILKNAW--SPAWTLQSVCRAIIALMAHPEPDS 122 (157)
Q Consensus 66 ~~pP~v~f~t~i~HPni~-~~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~~ 122 (157)
..||-|-|-.+.|...|| |+-|.|--.+...+| -|.-.+.+-|..|..++-.|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 479999999999999998 556777767776676 678899999999999999887443
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.03 E-value=16 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=22.4
Q ss_pred CCeEEEEEEeCCCCC-----CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP-----LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP-----~~pP~v~f~t 75 (157)
.|.|.|.-.+|--|| ..||+|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999864
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=58.74 E-value=32 Score=28.17 Aligned_cols=42 Identities=31% Similarity=0.537 Sum_probs=33.6
Q ss_pred cceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEe-eccccCc
Q 031584 34 IFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFL-TKIFHPN 81 (157)
Q Consensus 34 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPn 81 (157)
...+++.| ||.|...+-+|.|...||..||-+.|- ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 33566666 588999999999999999999999996 3347774
No 46
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=55.70 E-value=22 Score=27.56 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=26.5
Q ss_pred eccccC---ccccCCCeeeccCCCCCCCCC-CCHHHHHHHHHHHhcCCCC
Q 031584 75 TKIFHP---NVHFKTGEICLDILKNAWSPA-WTLQSVCRAIIALMAHPEP 120 (157)
Q Consensus 75 t~i~HP---ni~~~~G~icl~~l~~~W~p~-~~i~~il~~i~~ll~~p~~ 120 (157)
|++||+ ||. ++|.||+.... .|. .++.+ +....+.+.+-.+
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~F 175 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRF 175 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCcc
Confidence 456665 897 89999987664 553 35555 6666666555433
No 47
>PRK11700 hypothetical protein; Provisional
Probab=54.94 E-value=54 Score=24.59 Aligned_cols=71 Identities=18% Similarity=0.438 Sum_probs=46.8
Q ss_pred cceEEEEEE---CCCCCCC-CCCeEEEEEEeC--------------CCCCCCCCeeEEee--------ccccCccccCCC
Q 031584 34 IFKWTALIK---GPSETPY-EGGVFQLAFAVP--------------EQYPLQPPQVRFLT--------KIFHPNVHFKTG 87 (157)
Q Consensus 34 ~~~w~~~i~---gp~~t~y-~gg~f~~~i~fp--------------~~YP~~pP~v~f~t--------~i~HPni~~~~G 87 (157)
...|.+.+. =|.+..| .-|.=|+++++| .+.|..+|-|++.. +.-+|-|-.++|
T Consensus 88 ~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~ 167 (187)
T PRK11700 88 VGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDG 167 (187)
T ss_pred eCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeC
Confidence 445655442 2444445 457789999998 34455566565554 357888877899
Q ss_pred eeeccCCCCCCCCCCCHHHHHHH
Q 031584 88 EICLDILKNAWSPAWTLQSVCRA 110 (157)
Q Consensus 88 ~icl~~l~~~W~p~~~i~~il~~ 110 (157)
.+|+.+- .++|++|+.+
T Consensus 168 ~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 168 GICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CEEEEEc------CccHHHHHHh
Confidence 9999776 4678777754
No 48
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=48.94 E-value=26 Score=26.31 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.8
Q ss_pred CCeEEEEEEeCCCCCC-----CCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYPL-----QPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~v~f~t 75 (157)
.|.|.|.-.+|-.||. .||+|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4789999999999998 999998863
No 49
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=48.73 E-value=48 Score=26.04 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=33.8
Q ss_pred CCcceEEEEEECCCCCCCCC---CeEEEEEEeC-----CCCCCCCCeeEEeeccccC
Q 031584 32 SNIFKWTALIKGPSETPYEG---GVFQLAFAVP-----EQYPLQPPQVRFLTKIFHP 80 (157)
Q Consensus 32 ~n~~~w~~~i~gp~~t~y~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~HP 80 (157)
.|..-|++.....+....+| ..|+.++++. .+-||.||+|..+++-|..
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 35556888887544444444 3356666665 7899999999999986543
No 50
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.63 E-value=43 Score=25.02 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEecCCCcceEEEEEECCCC
Q 031584 4 SRARLFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSE 46 (157)
Q Consensus 4 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~n~~~w~~~i~gp~~ 46 (157)
..+||++|++.+.+.. ...++.-|.-+-.-.+.+.++--++
T Consensus 120 ~~~~iq~EIraviRQI--tasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQI--TASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred HHHHHHHHHHHHHHHH--hhheeecccccceeEEEEEEEeCCC
Confidence 4689999999999999 7788888877777788888874443
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=47.21 E-value=30 Score=25.83 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.0
Q ss_pred CCeEEEEEEeCCCCCC-----CCCeeEEe
Q 031584 51 GGVFQLAFAVPEQYPL-----QPPQVRFL 74 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~-----~pP~v~f~ 74 (157)
.|.|.|.-.+|--||. .||+|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 89999886
No 52
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=46.03 E-value=49 Score=20.48 Aligned_cols=43 Identities=19% Similarity=0.112 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcC
Q 031584 110 AIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 153 (157)
Q Consensus 110 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~ 153 (157)
.|..++..-++...+.++|...+ .+--+.|...+-+-+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l-~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELL-LEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45666666677778899999998 77888998888888877764
No 53
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.83 E-value=14 Score=27.73 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCeeeccCCCCCCCCCCCHHHHHHHHHHHhc
Q 031584 86 TGEICLDILKNAWSPAWTLQSVCRAIIALMA 116 (157)
Q Consensus 86 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~ 116 (157)
.+.+|++++.+-|+|.+|++..+.-++..+.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5779999999999999999877765555443
No 54
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=38.41 E-value=1.3e+02 Score=22.98 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCC-----------------
Q 031584 3 ASRARLFKEYKEVQREK-SADPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQY----------------- 64 (157)
Q Consensus 3 ~~~~Rl~~E~~~l~~~~-~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y----------------- 64 (157)
.+..||...++++++.- +.+.| |.+.+....+..| || |.+.++|..+=
T Consensus 9 s~~eR~~e~~~~~k~~L~~a~~G------------W~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS 74 (235)
T PF14135_consen 9 SPAERINEALAEYKKILTSAPNG------------WKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTS 74 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCc------------eEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeE
Confidence 46789888777776644 11333 5556662222222 44 77777776443
Q ss_pred --C---CCCCeeEEeec--cccCccc
Q 031584 65 --P---LQPPQVRFLTK--IFHPNVH 83 (157)
Q Consensus 65 --P---~~pP~v~f~t~--i~HPni~ 83 (157)
- ..-|.+.|.|- +.|--.+
T Consensus 75 ~Y~~~~~~gp~LsFdTyN~~iH~~s~ 100 (235)
T PF14135_consen 75 SYRLKQDQGPVLSFDTYNEYIHYFSD 100 (235)
T ss_pred EEEEecCCceEEEEEeCCceEEEccC
Confidence 2 23378888764 4565554
No 55
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=37.64 E-value=42 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred CeEEEEEEeCCCCCCCCCeeEEeec
Q 031584 52 GVFQLAFAVPEQYPLQPPQVRFLTK 76 (157)
Q Consensus 52 g~f~~~i~fp~~YP~~pP~v~f~t~ 76 (157)
-.+.+.+..+..||.+.|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4678889999999999999999875
No 56
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=36.59 E-value=39 Score=23.78 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=21.9
Q ss_pred cCCCcceEEEEEECCCCCCCC-CCeEEEEEEe
Q 031584 30 DDSNIFKWTALIKGPSETPYE-GGVFQLAFAV 60 (157)
Q Consensus 30 ~~~n~~~w~~~i~gp~~t~y~-gg~f~~~i~f 60 (157)
..+|...|.|++.|++||+.. ...|-+++.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 567788899999999998775 3444444444
No 57
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=35.49 E-value=86 Score=19.34 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcC
Q 031584 110 AIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 153 (157)
Q Consensus 110 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~ 153 (157)
.|+.++..-++..-+++++..++ ..=.+.|...+-..+++.|.
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~L-l~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELL-LELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 46777888788888999999888 66788898888888887764
No 58
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=34.75 E-value=1.3e+02 Score=19.37 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=25.6
Q ss_pred ceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeec
Q 031584 35 FKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76 (157)
Q Consensus 35 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 76 (157)
.+|.+.+.|+.+.--..-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 47999999887764444566788888888874 55555443
No 59
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=34.71 E-value=13 Score=33.97 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=0.0
Q ss_pred eEEEEEEeCCCCCCCCCeeEEeecc
Q 031584 53 VFQLAFAVPEQYPLQPPQVRFLTKI 77 (157)
Q Consensus 53 ~f~~~i~fp~~YP~~pP~v~f~t~i 77 (157)
+=-+.|.+|.+||..+|.+.+.+.-
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~~ 739 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRDE 739 (799)
T ss_dssp -------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHHH
Confidence 4457899999999999998776543
No 60
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=32.72 E-value=64 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.4
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=.+|.-|| ..||+|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 488999999999997 6789998864
No 61
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=31.44 E-value=69 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.736 Sum_probs=21.6
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=..|.-|| ..||+|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 488999999999999 4899999863
No 62
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.41 E-value=71 Score=24.57 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=20.9
Q ss_pred CCeEEEEEEeCCCCCC-------CCCeeEEe
Q 031584 51 GGVFQLAFAVPEQYPL-------QPPQVRFL 74 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~-------~pP~v~f~ 74 (157)
.|.|.|.=..|--||. .||+|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999985
No 63
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=29.23 E-value=58 Score=28.65 Aligned_cols=29 Identities=31% Similarity=0.772 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEEEeCCCCCC---CCCeeEEeec
Q 031584 47 TPYEGGVFQLAFAVPEQYPL---QPPQVRFLTK 76 (157)
Q Consensus 47 t~y~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 76 (157)
+||.=|.|-+ +.+|++||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 3566677876 568999995 8899999996
No 64
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=1.5e+02 Score=25.25 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.7
Q ss_pred eEEEEEEeCCCCCC
Q 031584 53 VFQLAFAVPEQYPL 66 (157)
Q Consensus 53 ~f~~~i~fp~~YP~ 66 (157)
...+.+.||.+|+.
T Consensus 210 ~k~i~vtFP~dy~a 223 (441)
T COG0544 210 EKDIKVTFPEDYHA 223 (441)
T ss_pred eeEEEEEcccccch
Confidence 36688999999994
No 65
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=29.13 E-value=81 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=21.1
Q ss_pred CCeEEEEEEeCCCCCC-------CCCeeEEe
Q 031584 51 GGVFQLAFAVPEQYPL-------QPPQVRFL 74 (157)
Q Consensus 51 gg~f~~~i~fp~~YP~-------~pP~v~f~ 74 (157)
.|.|.|.=.+|--||. .||+|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999985
No 66
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=28.89 E-value=61 Score=25.71 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=26.9
Q ss_pred CCCcchhHHHHHHhCCHHHHHHHHHHHHHHHc
Q 031584 121 DSPLNCDSGNLLRSGDIRGFQSMARMYTRLAA 152 (157)
Q Consensus 121 ~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a 152 (157)
....+.+++..| ..+|+.|...+.+.+++.+
T Consensus 236 y~F~s~~aa~~F-~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 236 YAFSSREAAYRF-AEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EEeCCHHHHHHH-HHCHHHHHHHHHHHHhhCH
Confidence 345778999999 8899999999999998865
No 67
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=28.59 E-value=83 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=21.1
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=..|.-|| ..||+|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 488999999999997 5789998863
No 68
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=28.10 E-value=87 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=.+|..|| ..||+|.|.-
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 488999999998887 5889998863
No 69
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=27.10 E-value=37 Score=26.81 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=23.0
Q ss_pred EEeCCCCCCCCCeeEEeecc-ccCccccCCCeeeccCCC
Q 031584 58 FAVPEQYPLQPPQVRFLTKI-FHPNVHFKTGEICLDILK 95 (157)
Q Consensus 58 i~fp~~YP~~pP~v~f~t~i-~HPni~~~~G~icl~~l~ 95 (157)
+.+..-||..-=.+...-++ +||.- .|+.||.|+..
T Consensus 19 lhvS~~~~a~~~~~~~v~Pla~hp~n--kN~vI~~DL~~ 55 (269)
T PF08411_consen 19 LHVSGMFGAERGCTSLVLPLAQHPTN--KNAVICFDLSS 55 (269)
T ss_dssp EEE-GGG-GGGTTEEEEEEEEE-SS---TTEEEEEETTS
T ss_pred EEecccchhhcCCceEEEeeeeCCCC--CCeEEEEECCC
Confidence 34445566655566666776 79986 79999999885
No 70
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=26.78 E-value=48 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.702 Sum_probs=10.8
Q ss_pred CCCCCCCHHHHHHHHHH
Q 031584 97 AWSPAWTLQSVCRAIIA 113 (157)
Q Consensus 97 ~W~p~~~i~~il~~i~~ 113 (157)
+|.|.++|++++...-.
T Consensus 37 gW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp ----SSSHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHH
Confidence 79999999999976554
No 71
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=26.39 E-value=90 Score=21.51 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=38.0
Q ss_pred EeCCCCCCCCCeeEEeeccccCccccCCCeeeccCCCCCCCCCCCHHHHH--HHHHHHhcCCCCCCCcchhHHHH
Q 031584 59 AVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVC--RAIIALMAHPEPDSPLNCDSGNL 131 (157)
Q Consensus 59 ~fp~~YP~~pP~v~f~t~i~HPni~~~~G~icl~~l~~~W~p~~~i~~il--~~i~~ll~~p~~~~~~n~~a~~~ 131 (157)
.||..||...-.|+|.++=|-.+- +.+|..+...+.=.+.|. ..++ .++...|.+-+.......++.+.
T Consensus 8 ~f~n~~p~~~y~i~~~~pEfts~C-P~tGqPD~a~i~i~YiP~---~~~vEsKSLKlYLnSfrn~~~~hE~~~~~ 78 (115)
T TIGR03139 8 AFPNPYPDRDYTIEFVCPEFTSLC-PKTGQPDFATIVISYIPD---QRCVELKSLKLYLFSFRNHGIFHENVTNT 78 (115)
T ss_pred EeCCCCCCCceEEEEeCCceecCC-CCCCCCeEEEEEEEEeCC---ccchhHHHHHHHHHHhcCCCchHHHHHHH
Confidence 467777777777777775554444 356666655444334454 2232 55666666665444444444433
No 72
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=25.90 E-value=1.9e+02 Score=24.17 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=26.7
Q ss_pred ccccCCCeeeccCCC---CCCCCC--CCHHHHHHHHHHH
Q 031584 81 NVHFKTGEICLDILK---NAWSPA--WTLQSVCRAIIAL 114 (157)
Q Consensus 81 ni~~~~G~icl~~l~---~~W~p~--~~i~~il~~i~~l 114 (157)
.|.+.+|.||..+-- +...|. =+|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 566789999986653 567774 4899999999888
No 73
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=24.86 E-value=1.1e+02 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.583 Sum_probs=20.8
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=..|.-|| ..||+|.|.-
T Consensus 150 ~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 150 DGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 588999999999997 4689998863
No 74
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=23.79 E-value=55 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHh
Q 031584 6 ARLFKEYKEVQR 17 (157)
Q Consensus 6 ~Rl~~E~~~l~~ 17 (157)
+||++||.++--
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 788888888743
No 75
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=23.17 E-value=2e+02 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCCCeEEEEEEeCCCCCCCCCeeEEeec
Q 031584 49 YEGGVFQLAFAVPEQYPLQPPQVRFLTK 76 (157)
Q Consensus 49 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 76 (157)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 699988864
No 76
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=23.08 E-value=1.6e+02 Score=24.13 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=28.2
Q ss_pred eEEEEEECCCCC-CCCCCeEEEEEE---eCCCCCCCCCeeEEee
Q 031584 36 KWTALIKGPSET-PYEGGVFQLAFA---VPEQYPLQPPQVRFLT 75 (157)
Q Consensus 36 ~w~~~i~gp~~t-~y~gg~f~~~i~---fp~~YP~~pP~v~f~t 75 (157)
+|+..|.|-.++ -|++|.+++++. |-.- =...|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~-~qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL-YQRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccc-cccCCceEeeE
Confidence 588999986555 888999988876 3333 34667999853
No 77
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=22.76 E-value=1.9e+02 Score=17.53 Aligned_cols=41 Identities=12% Similarity=-0.051 Sum_probs=28.0
Q ss_pred HHHHhcCCCCCCCcchhHHHHHHhCCHHHHHHHHHHHHHHHcC
Q 031584 111 IIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 153 (157)
Q Consensus 111 i~~ll~~p~~~~~~n~~a~~~~~~~~~~~f~~~a~~~~~k~a~ 153 (157)
|+.+..+-..+ .++.+++..+ ..+-+.|.+.+-+-+.+|+.
T Consensus 8 i~ria~~~Gi~-ris~~a~~~l-~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 8 IKDVAESLGIG-NLSDEAAKLL-AEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred HHHHHHHCCCc-cccHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 5788899888 77888887777777777664
No 78
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=67 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=18.0
Q ss_pred CCCCCCCCeeEEeeccccCccc
Q 031584 62 EQYPLQPPQVRFLTKIFHPNVH 83 (157)
Q Consensus 62 ~~YP~~pP~v~f~t~i~HPni~ 83 (157)
+.=+...|+|.|.-.+|||||-
T Consensus 303 dgs~eds~rvV~~V~lwhpevq 324 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQ 324 (334)
T ss_pred CCCcccCceEEEEEeccCcccc
Confidence 3334678899999999999996
No 79
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.46 E-value=1.4e+02 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.693 Sum_probs=20.7
Q ss_pred CCeEEEEEEeCCCCC------------------CCCCeeEEee
Q 031584 51 GGVFQLAFAVPEQYP------------------LQPPQVRFLT 75 (157)
Q Consensus 51 gg~f~~~i~fp~~YP------------------~~pP~v~f~t 75 (157)
.|.|.|.=..|.-|| ..||+|.|.-
T Consensus 156 ~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 156 DGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 488999999999886 4789998864
No 80
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=21.08 E-value=2.4e+02 Score=20.64 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCC--CCCeEEEecCCCcceEEEEEECCCCCCCCCCeEEEEEEeCCCCCCCCCeeEEeec
Q 031584 6 ARLFKEYKEVQREKSA--DPDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFAVPEQYPLQPPQVRFLTK 76 (157)
Q Consensus 6 ~Rl~~E~~~l~~~~~~--~~~~~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 76 (157)
+..-+|+..+...... ..|+.+. +.+.=...+.+..|+-.|- .-...+++.| .||-..||+|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 3345666666554411 2455544 2233333444443444442 2225566666 689999999999976
No 81
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=20.34 E-value=54 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.757 Sum_probs=10.1
Q ss_pred ccccCccccCCCeeec
Q 031584 76 KIFHPNVHFKTGEICL 91 (157)
Q Consensus 76 ~i~HPni~~~~G~icl 91 (157)
++|||+.| -|.+|.
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 58999997 465553
No 82
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=20.18 E-value=45 Score=22.75 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=16.4
Q ss_pred CCCeeeccCCCCCCCCCCCHH
Q 031584 85 KTGEICLDILKNAWSPAWTLQ 105 (157)
Q Consensus 85 ~~G~icl~~l~~~W~p~~~i~ 105 (157)
.+|.+|.=.+.+.|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 456679888889999987743
Done!