Query 031586
Match_columns 157
No_of_seqs 140 out of 1068
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 03:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 3.1E-56 1.1E-60 339.9 17.3 147 10-157 1-148 (149)
2 3v2d_I 50S ribosomal protein L 100.0 2.2E-55 7.6E-60 334.9 13.6 145 10-156 1-146 (148)
3 1nkw_F 50S ribosomal protein L 100.0 1.8E-54 6.2E-59 329.2 18.2 144 10-157 1-145 (146)
4 3r8s_H 50S ribosomal protein L 100.0 2E-55 6.8E-60 335.5 12.9 147 10-157 1-149 (149)
5 3bbo_J Ribosomal protein L9; l 100.0 1.8E-55 6.1E-60 348.6 -0.8 150 8-157 48-197 (197)
6 2hba_A BL17, 50S ribosomal pro 100.0 2.5E-29 8.5E-34 159.9 4.3 51 10-60 1-51 (52)
7 3ghd_A A cystathionine beta-sy 60.5 3.5 0.00012 26.0 1.4 25 95-120 30-54 (70)
8 3k6e_A CBS domain protein; str 57.5 19 0.00065 25.4 5.2 24 93-116 121-144 (156)
9 2p9m_A Hypothetical protein MJ 54.5 17 0.00057 24.3 4.2 22 94-115 116-137 (138)
10 3jtf_A Magnesium and cobalt ef 52.4 17 0.00057 24.4 4.0 23 93-115 105-127 (129)
11 2amw_A Hypothetical protein NE 52.1 6.8 0.00023 24.9 1.8 33 102-134 39-71 (83)
12 3hf7_A Uncharacterized CBS-dom 51.3 12 0.0004 25.3 3.0 22 93-114 106-127 (130)
13 2ef7_A Hypothetical protein ST 49.9 13 0.00044 24.8 3.0 22 94-115 105-126 (133)
14 3gby_A Uncharacterized protein 49.6 9.5 0.00032 25.5 2.3 22 94-115 106-127 (128)
15 3kxr_A Magnesium transporter, 48.8 17 0.00059 27.1 3.9 25 93-117 153-177 (205)
16 3kpb_A Uncharacterized protein 48.2 9.3 0.00032 25.0 2.0 21 94-114 100-120 (122)
17 3i8n_A Uncharacterized protein 47.3 14 0.00047 24.8 2.8 20 94-113 109-128 (130)
18 1dv5_A APO-DCP, APO-D-alanyl c 47.3 7.1 0.00024 24.8 1.2 35 100-134 36-70 (80)
19 3lqn_A CBS domain protein; csg 46.9 12 0.00043 25.5 2.6 23 94-116 123-145 (150)
20 2lki_A Putative uncharacterize 46.6 7.4 0.00025 26.6 1.3 33 102-134 61-93 (105)
21 2nyc_A Nuclear protein SNF4; b 46.1 15 0.00051 24.6 2.9 22 94-115 121-142 (144)
22 1q1v_A DEK protein; winged-hel 45.9 9.9 0.00034 24.5 1.8 23 102-124 32-55 (70)
23 3nqr_A Magnesium and cobalt ef 43.9 14 0.00049 24.6 2.5 20 94-113 106-125 (127)
24 4gqw_A CBS domain-containing p 43.5 21 0.0007 24.1 3.3 22 94-115 123-144 (152)
25 2yzi_A Hypothetical protein PH 43.5 11 0.00037 25.4 1.8 22 95-116 110-131 (138)
26 1yav_A Hypothetical protein BS 42.7 42 0.0014 23.0 4.9 38 76-116 107-144 (159)
27 3ocm_A Putative membrane prote 42.2 21 0.00072 25.7 3.3 22 94-115 137-158 (173)
28 2emq_A Hypothetical conserved 42.1 35 0.0012 23.2 4.4 23 94-116 119-141 (157)
29 3oco_A Hemolysin-like protein 40.5 18 0.00061 25.0 2.6 22 94-115 123-144 (153)
30 3lv9_A Putative transporter; C 40.1 21 0.00073 24.3 3.0 22 94-115 125-146 (148)
31 3sl7_A CBS domain-containing p 40.0 28 0.00096 24.2 3.7 22 94-115 136-157 (180)
32 1o50_A CBS domain-containing p 39.1 22 0.00074 24.6 2.9 22 94-115 133-154 (157)
33 3ctu_A CBS domain protein; str 38.3 16 0.00054 25.2 2.0 23 94-116 122-144 (156)
34 3lfr_A Putative metal ION tran 37.7 11 0.00037 25.7 1.0 22 94-115 107-128 (136)
35 3fio_A A cystathionine beta-sy 37.0 20 0.0007 21.1 2.2 19 97-115 32-50 (70)
36 2pfi_A Chloride channel protei 35.6 29 0.00099 23.8 3.1 23 96-118 129-151 (164)
37 3ry3_A Putative solute-binding 34.1 64 0.0022 27.4 5.6 55 86-144 89-147 (528)
38 3lhh_A CBS domain protein; str 33.9 25 0.00087 24.9 2.6 22 94-115 144-165 (172)
39 2uv4_A 5'-AMP-activated protei 33.8 27 0.00092 23.9 2.7 20 94-113 131-150 (152)
40 4e1r_A Protein LSR2; anti-para 33.5 12 0.0004 25.3 0.6 46 3-58 25-71 (86)
41 2z1c_A Hydrogenase expression/ 32.0 9.5 0.00033 25.0 -0.0 26 10-39 28-53 (75)
42 2lbf_B 60S acidic ribosomal pr 31.3 24 0.00082 22.7 1.8 24 102-126 18-41 (70)
43 3a1y_A 50S ribosomal protein P 30.5 19 0.00065 22.2 1.2 24 102-126 16-39 (58)
44 1m2d_A [2Fe-2S] ferredoxin; th 30.1 22 0.00076 24.1 1.6 21 95-115 69-89 (110)
45 2k75_A Uncharacterized protein 29.7 16 0.00053 24.9 0.8 17 22-38 60-76 (106)
46 3fhm_A Uncharacterized protein 28.9 41 0.0014 23.4 3.0 22 94-115 65-86 (165)
47 2p5k_A Arginine repressor; DNA 28.0 27 0.00091 20.5 1.6 32 102-135 19-50 (64)
48 2lbf_A 60S acidic ribosomal pr 27.4 30 0.001 22.1 1.8 24 102-126 22-45 (69)
49 1pbj_A Hypothetical protein; s 26.6 24 0.00083 22.9 1.3 19 97-115 105-123 (125)
50 3ddj_A CBS domain-containing p 25.7 47 0.0016 25.3 3.0 23 94-116 265-287 (296)
51 2oux_A Magnesium transporter; 25.2 48 0.0016 25.9 3.0 22 94-115 239-260 (286)
52 2kbn_A Conserved protein; nucl 24.6 53 0.0018 22.3 2.8 28 10-38 48-77 (109)
53 2rih_A Conserved protein with 23.7 31 0.0011 23.2 1.4 21 94-114 108-128 (141)
54 4fry_A Putative signal-transdu 23.7 52 0.0018 22.4 2.7 21 96-116 117-137 (157)
55 3k2v_A Putative D-arabinose 5- 23.5 47 0.0016 22.6 2.4 21 94-114 68-88 (149)
56 1vr9_A CBS domain protein/ACT 23.5 79 0.0027 23.2 3.8 24 94-117 110-133 (213)
57 2rc3_A CBS domain; in SITU pro 23.4 36 0.0012 22.6 1.7 20 96-115 113-132 (135)
58 2yvy_A MGTE, Mg2+ transporter 23.3 36 0.0012 26.3 1.9 22 94-115 237-258 (278)
59 3fv6_A YQZB protein; CBS domai 23.0 39 0.0014 23.3 1.9 20 98-117 128-147 (159)
60 3t4n_C Nuclear protein SNF4; C 22.8 79 0.0027 24.3 3.8 22 94-115 300-321 (323)
61 2o16_A Acetoin utilization pro 22.8 47 0.0016 23.0 2.3 19 97-115 118-136 (160)
62 4e1p_A Protein LSR2; anti-para 22.7 24 0.00083 22.2 0.6 45 4-58 1-46 (61)
63 1jsu_C P27, KIP1, CIP2; comple 22.7 41 0.0014 22.4 1.8 20 97-116 8-27 (84)
64 2noo_A NIKA, nickel-binding pe 22.2 1E+02 0.0034 25.8 4.6 56 86-144 62-124 (502)
65 1xoc_A Oligopeptide-binding pr 22.1 1.4E+02 0.0048 25.0 5.6 56 86-144 81-143 (520)
66 2j9l_A Chloride channel protei 22.0 54 0.0019 22.8 2.5 22 96-117 147-168 (185)
67 1neu_A Myelin P0 protein; stru 21.9 1.1E+02 0.0038 19.4 3.9 31 125-155 83-118 (124)
68 2ava_A ACP I, acyl carrier pro 21.8 68 0.0023 19.7 2.7 24 102-125 38-61 (82)
69 2auv_A Potential NAD-reducing 21.8 27 0.00092 22.4 0.7 18 97-114 67-84 (85)
70 2or8_A Hepatitis A virus cellu 21.8 1.1E+02 0.0039 19.2 4.0 27 130-156 82-111 (116)
71 2jq4_A AGR_C_4658P, hypothetic 21.7 18 0.00062 24.4 -0.1 25 102-126 57-81 (105)
72 3iz5_h 60S ribosomal protein L 21.5 60 0.002 23.5 2.6 36 22-57 46-87 (133)
73 2kci_A Putative acyl carrier p 21.2 26 0.00088 23.1 0.5 32 101-134 35-66 (87)
74 2ahq_A Sigma-54, RNA polymeras 21.1 27 0.00093 22.8 0.6 23 102-125 37-59 (76)
75 2wol_A ORF15, clavulanic acid 20.8 1.6E+02 0.0056 24.8 5.7 56 86-144 98-178 (562)
76 4esy_A CBS domain containing m 20.4 10 0.00035 26.9 -1.7 20 96-115 144-163 (170)
77 2d28_C XPSE, type II secretion 20.1 51 0.0018 22.8 2.0 19 101-119 47-65 (149)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=3.1e-56 Score=339.92 Aligned_cols=147 Identities=30% Similarity=0.520 Sum_probs=142.7
Q ss_pred eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV 89 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i 89 (157)
|+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.+++.++.+++|++++++|++. .|+|
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i 79 (149)
T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKL-TVTI 79 (149)
T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEE
T ss_pred CEEEEcccccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEE
Confidence 899999999999999999999999999999999999999999999999999999998999999999999999998 7999
Q ss_pred EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586 90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFAN 157 (157)
Q Consensus 90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~ 157 (157)
.+++|++|+||||||++||+++|.+++|++||+++|.+| ||+++|+|+|+|+||++|+|+++|+|++.
T Consensus 80 ~~k~g~~gklfGSVt~~dIa~al~~~~g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~~ 148 (149)
T 1div_A 80 PAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTEQ 148 (149)
T ss_dssp EECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCSCEEESEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEeCCCCcEEeecCHHHHHHHHHHhhCCeechheEECCCCccccEEEEEEEEECCCCEEEEEEEEEec
Confidence 999999999999999999999999999999999999998 59999999999999999999999999863
No 2
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=2.2e-55 Score=334.92 Aligned_cols=145 Identities=35% Similarity=0.572 Sum_probs=140.9
Q ss_pred eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV 89 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i 89 (157)
|+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++. .|+|
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~-~v~i 79 (148)
T 3v2d_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENL-TLTI 79 (148)
T ss_dssp CEEEESSCBTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHSSSC-CEEE
T ss_pred CeEEEccccccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 899999999999999999999999999999999999999999999999999999888899999999999999998 7999
Q ss_pred EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEee
Q 031586 90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFA 156 (157)
Q Consensus 90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~ 156 (157)
.+++|++ +||||||++||+++|.+++|++||+++|.|| ||+++|+|+|+|+||++|+|+++|+|++
T Consensus 80 ~~kag~~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~ 146 (148)
T 3v2d_I 80 PVRAGET-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVA 146 (148)
T ss_dssp ECCBSSS-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSSCBCSCEEEEEECCSBTTBCCEEEEEEEC
T ss_pred EEEcCCC-ccccccCHHHHHHHHHHhcCCCcchheEEcCchhhceEEEEEEEEECCCcEEEEEEEEEe
Confidence 9999999 9999999999999999989999999999998 5999999999999999999999999986
No 3
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=1.8e-54 Score=329.24 Aligned_cols=144 Identities=36% Similarity=0.575 Sum_probs=139.7
Q ss_pred eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV 89 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i 89 (157)
|+|||++| +|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++. .|+|
T Consensus 1 MkVIL~~d-~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i 78 (146)
T 1nkw_F 1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGV-AVEL 78 (146)
T ss_pred CeEEEeec-CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-EEEE
Confidence 89999999 999999999999999999999999999999999999999999999988899999999999999998 7999
Q ss_pred EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc-CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586 90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFAN 157 (157)
Q Consensus 90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~-~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~ 157 (157)
.+++| +|+||||||++||+++|.++ |++||+++|.|| ||+++|+|+|+|+||++|+|+++|+|++.
T Consensus 79 ~~k~g-~gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~~ 145 (146)
T 1nkw_F 79 SVRAG-EGKIYGAVTHQDVANSLDQL-GFDVDRRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHAA 145 (146)
T ss_pred EEEcC-CCceeeccCHHHHHHHHHHc-CCeechheEECCCcccccEEEEEEEEECCCCEEEEEEEEEec
Confidence 99999 99999999999999999999 999999999998 59999999999999999999999999863
No 4
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=2e-55 Score=335.51 Aligned_cols=147 Identities=33% Similarity=0.506 Sum_probs=141.1
Q ss_pred eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEE
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKV 89 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l~i 89 (157)
|+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++...|+|
T Consensus 1 MkVIL~~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~~v~i 80 (149)
T 3r8s_H 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTI 80 (149)
T ss_dssp CCCEESSCCTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEecccccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 89999999999999999999999999999999999999999999999999999888888999999999999999536999
Q ss_pred EEecCCCCceeeccCHHHHHHHHHHhcCCCccCcccccc--CccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586 90 KRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLP--EIRETGEYIAQLKLHPEVTARIRLNVFAN 157 (157)
Q Consensus 90 ~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~--~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~ 157 (157)
.+++|++|+||||||++||+++|+++ |++||+++|.|| ||+++|+|+|+|+||++|+++++|+|++.
T Consensus 81 ~~k~g~~gklfGSVt~~dIa~al~~~-g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~e 149 (149)
T 3r8s_H 81 ASKAGDEGKLFGSIGTRDIADAVTAA-GVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE 149 (149)
T ss_dssp EECBCTTSEEEEEECHHHHHHHHHTT-SCCCCTTSEECSSCCEEESEEEEEEECSSSSCCCCEEEEEEEC
T ss_pred EEEcCCCCceEcccCHHHHHHHHHHc-CCceehheEEcCCccccceEEEEEEEEECCCCEEEEEEEEEEC
Confidence 99999999999999999999999988 999999999997 59999999999999999999999999874
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.8e-55 Score=348.59 Aligned_cols=150 Identities=78% Similarity=1.194 Sum_probs=142.2
Q ss_pred CceEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeE
Q 031586 8 TQIQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAF 87 (157)
Q Consensus 8 k~mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~~l 87 (157)
++|+|||++||+|||++||+|+|+||||||||||+|+|++||++|+++++.++++.++++++.+++|++++++|++...|
T Consensus 48 k~MkVILledV~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~e~~~~~~~~~A~~la~~L~~~~~v 127 (197)
T 3bbo_J 48 KLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAF 127 (197)
T ss_dssp --CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHHHHTHHHHSSSCCCC
T ss_pred CceEEEEcccccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 47999999999999999999999999999999999999999999999999999988888888999999999999996239
Q ss_pred EEEEecCCCCceeeccCHHHHHHHHHHhcCCCccCccccccCccceeeEEEEEEeCCCcEEEEEEEEeeC
Q 031586 88 KVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 157 (157)
Q Consensus 88 ~i~~k~~~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G~~~v~v~l~~~v~~~l~v~V~~~ 157 (157)
+|.+++|++|+||||||++||+++|.+++|++||++.|.|++||++|+|+|+|+||+||+++|+|+|+++
T Consensus 128 ~i~~kaGe~GkLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~IK~lG~y~V~VkLh~eV~a~i~V~V~~~ 197 (197)
T 3bbo_J 128 KVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197 (197)
T ss_dssp BCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCCCSSSSCEEECCCCBTTBCCCEEEBCCCC
T ss_pred EEEEEeCCCCcEecccCHHHHHHHHHHhhCCeeeeeEEEeccccceEEEEEEEEECCCcEEEEEEEEEeC
Confidence 9999999999999999999999999999999999999999889999999999999999999999999875
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=99.95 E-value=2.5e-29 Score=159.86 Aligned_cols=51 Identities=33% Similarity=0.599 Sum_probs=49.0
Q ss_pred eEEEEecccccccCCCcEEEecCccccccccCCCceEecCHHHHHHHHHHH
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYLHPMGKAQIVTPLLLKEMKMEE 60 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~LiP~glA~~at~~nl~~~~~~~ 60 (157)
|+|||++||++||++||+|+|++|||||||||+|+|++||++|+++++.++
T Consensus 1 MkVIL~~dV~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEEcccccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999999998654
No 7
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=60.50 E-value=3.5 Score=25.98 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=19.5
Q ss_pred CCCceeeccCHHHHHHHHHHhcCCCc
Q 031586 95 KGKQIFGSVTAQDVVDIIKAQLQRDV 120 (157)
Q Consensus 95 ~~gklfGsVt~~dI~~~l~~~~gi~i 120 (157)
++|++.|.||..||...+..+ |.+.
T Consensus 30 d~~~lvGIvT~~Di~~~~~~~-~~~~ 54 (70)
T 3ghd_A 30 EGDEILGVVTERDILDKVVAK-GKNP 54 (70)
T ss_dssp ETTEEEEEEEHHHHHHHTTTT-TCCG
T ss_pred ECCEEEEEEEHHHHHHHHHhc-CCCc
Confidence 367999999999999877655 5443
No 8
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=57.53 E-value=19 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.2
Q ss_pred cCCCCceeeccCHHHHHHHHHHhc
Q 031586 93 GGKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 93 ~~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
+.++|++-|.||..||.+++....
T Consensus 121 Vd~~g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 121 VDAEGIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred EecCCEEEEEEEHHHHHHHHHHHh
Confidence 568899999999999999998764
No 9
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=54.48 E-value=17 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.9
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++.|.||..||...+.++
T Consensus 116 d~~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 116 DKNNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCeEEEEEEHHHHHHHHHhh
Confidence 4578999999999999988753
No 10
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=52.36 E-value=17 Score=24.37 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.5
Q ss_pred cCCCCceeeccCHHHHHHHHHHh
Q 031586 93 GGKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 93 ~~~~gklfGsVt~~dI~~~l~~~ 115 (157)
..++|++-|.||..||.++|...
T Consensus 105 vd~~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 105 IDEHGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp ECC-CCEEEEEEHHHHHHHHHHT
T ss_pred EeCCCCEEEEEEHHHHHHHHhCC
Confidence 34678999999999999998653
No 11
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=52.13 E-value=6.8 Score=24.91 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHHHhcCCCccCccccccCcccee
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 134 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G 134 (157)
|+..-+++-.|.+.||++++...+....++++|
T Consensus 39 Sl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~ 71 (83)
T 2amw_A 39 SMAVVNVITALEEYFDFSVDDDEISAQTFETLG 71 (83)
T ss_dssp HHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHH
T ss_pred HHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHH
Confidence 788889999999999999998876543355544
No 12
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=51.26 E-value=12 Score=25.33 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.9
Q ss_pred cCCCCceeeccCHHHHHHHHHH
Q 031586 93 GGKGKQIFGSVTAQDVVDIIKA 114 (157)
Q Consensus 93 ~~~~gklfGsVt~~dI~~~l~~ 114 (157)
.+++|++-|.||..||.++|..
T Consensus 106 vd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 106 VDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ECTTSCEEEEEEHHHHHHHHHC
T ss_pred EcCCCCEEEEeeHHHHHHHHhC
Confidence 3567899999999999999864
No 13
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=49.90 E-value=13 Score=24.78 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.5
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++.|.||..||...+.+.
T Consensus 105 d~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 105 DDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHHH
Confidence 4578999999999999999876
No 14
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=49.58 E-value=9.5 Score=25.50 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
+++|++-|.||..||.+++.+.
T Consensus 106 d~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 106 DEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp CTTCBEEEEEEHHHHHHHHHTT
T ss_pred CCCCCEEEEEEHHHHHHHHHhh
Confidence 4688999999999999998764
No 15
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=48.82 E-value=17 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=21.3
Q ss_pred cCCCCceeeccCHHHHHHHHHHhcC
Q 031586 93 GGKGKQIFGSVTAQDVVDIIKAQLQ 117 (157)
Q Consensus 93 ~~~~gklfGsVt~~dI~~~l~~~~g 117 (157)
+.++|++-|.||..||.+.+.+...
T Consensus 153 VD~~g~lvGiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 153 IDDAGELIGRVTLRAATALVREHYE 177 (205)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHHHC
T ss_pred EcCCCeEEEEEEHHHHHHHHHHHHH
Confidence 3568899999999999999987744
No 16
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=48.18 E-value=9.3 Score=25.05 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCCCceeeccCHHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIKA 114 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~ 114 (157)
.++|++-|.||..||.+++.+
T Consensus 100 d~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 100 DDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CTTCBEEEEEEHHHHHHHHC-
T ss_pred CCCCCEEEEEeHHHHHHHhhc
Confidence 456899999999999998864
No 17
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=47.32 E-value=14 Score=24.82 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.7
Q ss_pred CCCCceeeccCHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIK 113 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~ 113 (157)
.++|++-|.||..||.++|.
T Consensus 109 d~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 109 DEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp CTTSCEEEEEEHHHHHHHHH
T ss_pred cCCCCEEEEEEHHHHHHHHc
Confidence 56789999999999999874
No 18
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=47.29 E-value=7.1 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.3
Q ss_pred eeccCHHHHHHHHHHhcCCCccCccccccCcccee
Q 031586 100 FGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 134 (157)
Q Consensus 100 fGsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G 134 (157)
.=|+..-+++-+|.+.||++|+...+....++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHH
Confidence 34889999999999999999998776544455554
No 19
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=46.94 E-value=12 Score=25.51 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=20.2
Q ss_pred CCCCceeeccCHHHHHHHHHHhc
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
.++|++-|.||..||...+.+.+
T Consensus 123 d~~g~~~Giit~~dil~~l~~~~ 145 (150)
T 3lqn_A 123 NEDGYFEGILTRRAILKLLNKKV 145 (150)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHHC
T ss_pred CCCCcEEEEEEHHHHHHHHHHHh
Confidence 46889999999999999998763
No 20
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=46.60 E-value=7.4 Score=26.59 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.8
Q ss_pred ccCHHHHHHHHHHhcCCCccCccccccCcccee
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 134 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G 134 (157)
|+..-+++-+|.+.||++|+...+....++++|
T Consensus 61 SL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~ 93 (105)
T 2lki_A 61 SMAVVNVITALEEYFDFSVDDDEISAQTFETLG 93 (105)
T ss_dssp HHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHH
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHH
Confidence 888889999999999999998876544566655
No 21
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=46.14 E-value=15 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.9
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||..++..+
T Consensus 121 d~~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 121 DDVGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCCEEEEEEHHHHHHHHHhc
Confidence 4578999999999999998754
No 22
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=45.89 E-value=9.9 Score=24.47 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.3
Q ss_pred ccCHHHHHHHHHHhc-CCCccCcc
Q 031586 102 SVTAQDVVDIIKAQL-QRDVDKKI 124 (157)
Q Consensus 102 sVt~~dI~~~l~~~~-gi~i~k~~ 124 (157)
+||.++|...|.+.| |+++..+.
T Consensus 32 tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 32 EVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHhHHHHHHHHHHHccCCCChHHH
Confidence 899999999999999 98887554
No 23
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=43.86 E-value=14 Score=24.56 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.0
Q ss_pred CCCCceeeccCHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIK 113 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~ 113 (157)
+++|++-|.||..||.++|.
T Consensus 106 d~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 106 DEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CTTSCEEEEEEHHHHHHHC-
T ss_pred eCCCCEEEEEEHHHHHHHHh
Confidence 56889999999999998864
No 24
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=43.54 E-value=21 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.8
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||...+.+.
T Consensus 123 d~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 123 DSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp CTTSBEEEEEEHHHHHHHHHC-
T ss_pred CCCCcEEEEEEHHHHHHHHHhc
Confidence 4678999999999999998764
No 25
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=43.45 E-value=11 Score=25.39 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.1
Q ss_pred CCCceeeccCHHHHHHHHHHhc
Q 031586 95 KGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 95 ~~gklfGsVt~~dI~~~l~~~~ 116 (157)
++|++-|.||..||...+.++.
T Consensus 110 ~~g~~~Giit~~dil~~~~~~~ 131 (138)
T 2yzi_A 110 EEGKIVGIFTLSDLLEASRRRL 131 (138)
T ss_dssp ETTEEEEEEEHHHHHHHHHCCS
T ss_pred CCCCEEEEEEHHHHHHHHHHHH
Confidence 4689999999999999998664
No 26
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=42.73 E-value=42 Score=23.05 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHHhccCCeEEEEEecCCCCceeeccCHHHHHHHHHHhc
Q 031586 76 QLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 76 ~~~~~L~~~~~l~i~~k~~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
+..+.+... .+ ++. ..++|++-|.||..||...+.+.+
T Consensus 107 ~a~~~m~~~-~~-lpV-vd~~g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 107 KGFGMVINN-GF-VCV-ENDEQVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp HHHHHTTTC-SE-EEE-ECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CE-EEE-EeCCCeEEEEEEHHHHHHHHHHHH
Confidence 344445444 34 443 345789999999999999998764
No 27
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=42.18 E-value=21 Score=25.69 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.++|...
T Consensus 137 de~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 137 DEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp CTTCCEEEEECHHHHHHHHHCC
T ss_pred eCCCCEEEEEeHHHHHHHHhCc
Confidence 5678999999999999999754
No 28
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=42.08 E-value=35 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.0
Q ss_pred CCCCceeeccCHHHHHHHHHHhc
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
+++|++.|.||..||...+....
T Consensus 119 d~~g~~~Giit~~dil~~~~~~~ 141 (157)
T 2emq_A 119 NDDGYFAGIFTRREVLKQLNKQL 141 (157)
T ss_dssp CSSSSEEEEEEHHHHHHHHHHTT
T ss_pred cCCCeEEEEEEHHHHHHHHHHHh
Confidence 45789999999999999998763
No 29
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=40.54 E-value=18 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.7
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.+++...
T Consensus 123 d~~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 123 DEYGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp CTTSCEEEEECHHHHHHHHHC-
T ss_pred eCCCCEEEEeeHHHHHHHHhcc
Confidence 4678999999999999998754
No 30
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=40.11 E-value=21 Score=24.32 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.9
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.++|...
T Consensus 125 d~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 125 DEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp CTTSSEEEEEEHHHHHHHHHHT
T ss_pred eCCCCEEEEEEHHHHHHHHhCc
Confidence 4678999999999999998653
No 31
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=39.96 E-value=28 Score=24.23 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.+++.+.
T Consensus 136 d~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 136 DADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHHH
Confidence 4688999999999999998764
No 32
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=39.06 E-value=22 Score=24.62 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||..++.+.
T Consensus 133 d~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 133 DEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHS
T ss_pred cCCCEEEEEEEHHHHHHHHHHh
Confidence 4578999999999999998764
No 33
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=38.33 E-value=16 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCCCceeeccCHHHHHHHHHHhc
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
.++|++-|.||..||..++.+..
T Consensus 122 d~~g~~~Giit~~dil~~l~~~~ 144 (156)
T 3ctu_A 122 DAEGIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp CTTSBEEEEEETTHHHHHHHHHS
T ss_pred cCCCeEEEEEEHHHHHHHHHHHH
Confidence 46789999999999999998874
No 34
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=37.68 E-value=11 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.++|..+
T Consensus 107 d~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 107 DEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp CTTSCEEEEEEHHHHHTTC---
T ss_pred eCCCCEEEEEEHHHHHHHHhCC
Confidence 5678999999999999887654
No 35
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=36.99 E-value=20 Score=21.05 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=16.9
Q ss_pred CceeeccCHHHHHHHHHHh
Q 031586 97 KQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 97 gklfGsVt~~dI~~~l~~~ 115 (157)
|++-|.||..||...+...
T Consensus 32 ~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 32 DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT
T ss_pred CEEEEEEEHHHHHHHHHHc
Confidence 7999999999999988654
No 36
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=35.56 E-value=29 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.0
Q ss_pred CCceeeccCHHHHHHHHHHhcCC
Q 031586 96 GKQIFGSVTAQDVVDIIKAQLQR 118 (157)
Q Consensus 96 ~gklfGsVt~~dI~~~l~~~~gi 118 (157)
+|++-|.||..||..++.+..+.
T Consensus 129 ~g~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 129 RGRAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEHHHHHHHHHhhhCC
Confidence 57999999999999999887653
No 37
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=34.13 E-value=64 Score=27.41 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=37.2
Q ss_pred eEEEEEecC---CCCceeeccCHHHHHHHHHHhcCCCccCcccc-ccCccceeeEEEEEEeCC
Q 031586 86 AFKVKRKGG---KGKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD-LPEIRETGEYIAQLKLHP 144 (157)
Q Consensus 86 ~l~i~~k~~---~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I~-l~~Ik~~G~~~v~v~l~~ 144 (157)
+.+|+.+.| .||. .||++|+.-.+.....-.- ..... +..++.++.|+|.|+|..
T Consensus 89 t~tf~LR~gv~f~DG~---p~TA~DV~~s~~~~~~~~~-~~~~~~i~~v~~~d~~Tv~i~l~~ 147 (528)
T 3ry3_A 89 TWLLTLKPDLKFSDGS---PLTAKDVAFTYNNAAASGG-KVDMGNFLSAEVIDPLNVRIHLKA 147 (528)
T ss_dssp EEEEEECTTCBCTTSC---BCCHHHHHHHHHHHTSSSC-SSCCSSEEEEEEEETTEEEEEESS
T ss_pred EEEEEECCCCEeCCcC---CCCHHHHHHHHHHHHhccc-ccccccceEEEEecCCEEEEEECC
Confidence 688888765 4665 7999999999987532110 01111 124788999999999874
No 38
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=33.89 E-value=25 Score=24.88 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.1
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.++|...
T Consensus 144 d~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 144 DEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp CTTSCEEEEEEHHHHHHHHHTT
T ss_pred eCCCCEEEEeeHHHHHHHHhCC
Confidence 5678999999999999998754
No 39
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=33.76 E-value=27 Score=23.95 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCCCceeeccCHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIK 113 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~ 113 (157)
.++|++-|.||..||..++.
T Consensus 131 d~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 131 DENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp CTTSBEEEEEEHHHHHHHHC
T ss_pred CCCCeEEEEEEHHHHHHHHH
Confidence 45789999999999998874
No 40
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=33.46 E-value=12 Score=25.32 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCcCCceEEEEecccccccCCCcEEEecCcc-ccccccCCCceEecCHHHHHHHHH
Q 031586 3 RMNKKTQIQIILKEDVAELGKKGQLLDVKAGF-YRNYLHPMGKAQIVTPLLLKEMKM 58 (157)
Q Consensus 3 ~~~kkk~mkVIL~~dV~~lGk~Gdvv~Vk~Gy-aRN~LiP~glA~~at~~nl~~~~~ 58 (157)
+||+| +.|.|..|+.|-+...+.|.- |+ +.+|- +=.+.+|.++|+.
T Consensus 25 ~MAqk--v~V~LvDDLDG~~~adETV~F--sLDGv~YE------IDLS~~NA~kLR~ 71 (86)
T 4e1r_A 25 AMAKK--VTVTLVDDFDGSGAADETVEF--GLDGVTYE------IDLSTKNATKLRG 71 (86)
T ss_dssp ----C--CCCCCBCTTTCCSBCCEEEEE--EETTEEEE------EEECHHHHHHHHH
T ss_pred cceeE--EEEEEEEcCCCCCcCCcEEEE--EECCEEEE------EECCHHHHHHHHH
Confidence 79985 789999999987777775532 22 23333 4468888777753
No 41
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=32.04 E-value=9.5 Score=24.96 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=19.2
Q ss_pred eEEEEecccccccCCCcEEEecCccccccc
Q 031586 10 IQIILKEDVAELGKKGQLLDVKAGFYRNYL 39 (157)
Q Consensus 10 mkVIL~~dV~~lGk~Gdvv~Vk~GyaRN~L 39 (157)
+.+-|..|+ ..||.|-|..|||.+-+
T Consensus 28 V~l~Lv~~~----~vGD~VLVH~GfAi~~i 53 (75)
T 2z1c_A 28 VRLDLMPDT----KPGDWVIVHTGFAIEKL 53 (75)
T ss_dssp EECTTSTTC----CTTCEEEEETTEEEEEE
T ss_pred EEEEEeCCC----CCCCEEEEecchhhhhC
Confidence 444455554 68999999999998643
No 42
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=31.32 E-value=24 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred ccCHHHHHHHHHHhcCCCccCcccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVD 126 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~ 126 (157)
++|..+|...|+.- |+++|..++.
T Consensus 18 ~~ta~~I~~il~aa-Gvevd~~~~~ 41 (70)
T 2lbf_B 18 SPSAKDIKKILDSV-GIEADDDRLN 41 (70)
T ss_dssp SCCHHHHHHHHHTT-TCCCCTTHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 79999999999876 9999988765
No 43
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=30.52 E-value=19 Score=22.20 Aligned_cols=24 Identities=4% Similarity=0.275 Sum_probs=20.9
Q ss_pred ccCHHHHHHHHHHhcCCCccCcccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVD 126 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~ 126 (157)
++|..+|...|+.- |+++|..++.
T Consensus 16 ~~t~~~I~~il~aa-Gveve~~~~~ 39 (58)
T 3a1y_A 16 EINEENLKAVLQAA-GVEPEEARIK 39 (58)
T ss_dssp CCCHHHHHHHHHHT-TCCCCHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 89999999999886 9999987654
No 44
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=30.12 E-value=22 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.0
Q ss_pred CCCceeeccCHHHHHHHHHHh
Q 031586 95 KGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 95 ~~gklfGsVt~~dI~~~l~~~ 115 (157)
++|.+||-||+.++.+.|.+.
T Consensus 69 P~~~~y~~vt~e~v~~il~~~ 89 (110)
T 1m2d_A 69 PDGVWYGQVKPEDVDEIVEKH 89 (110)
T ss_dssp TTTEEECSCCGGGHHHHHHHT
T ss_pred eCCEEEecCCHHHHHHHHHHH
Confidence 467899999999998888764
No 45
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.68 E-value=16 Score=24.95 Aligned_cols=17 Identities=0% Similarity=0.137 Sum_probs=15.3
Q ss_pred cCCCcEEEecCcccccc
Q 031586 22 GKKGQLLDVKAGFYRNY 38 (157)
Q Consensus 22 Gk~Gdvv~Vk~GyaRN~ 38 (157)
=..||+|.+..||++.|
T Consensus 60 l~~Gdvv~i~ng~v~~~ 76 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQF 76 (106)
T ss_dssp CCTTEEEEEEEEEEEEE
T ss_pred cCCCCEEEEEeeEEeEE
Confidence 57899999999999876
No 46
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=28.93 E-value=41 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
+++|++.|.||..||...+...
T Consensus 65 d~~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 65 DADGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHhc
Confidence 4678999999999999988764
No 47
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=28.01 E-value=27 Score=20.55 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHhcCCCccCccccccCccceee
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGE 135 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G~ 135 (157)
.+|..+|++.|.+. |..|....|. ..++.+|.
T Consensus 19 ~~t~~el~~~l~~~-~~~vs~~Tv~-R~L~~lg~ 50 (64)
T 2p5k_A 19 IETQDELVDMLKQD-GYKVTQATVS-RDIKELHL 50 (64)
T ss_dssp CCSHHHHHHHHHHT-TCCCCHHHHH-HHHHHHTC
T ss_pred CCCHHHHHHHHHHh-CCCcCHHHHH-HHHHHcCC
Confidence 58899999999876 7777665553 12555664
No 48
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=27.42 E-value=30 Score=22.07 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.1
Q ss_pred ccCHHHHHHHHHHhcCCCccCcccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVD 126 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~ 126 (157)
++|..+|...|+.- |+++|..++.
T Consensus 22 ~~ta~~I~~il~Aa-Gveve~~~~~ 45 (69)
T 2lbf_A 22 TVTEDKINALIKAA-GVNVEPFWPG 45 (69)
T ss_dssp CCCHHHHHHHHHHH-TCCCCTHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 79999999999887 9999987654
No 49
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=26.63 E-value=24 Score=22.93 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.8
Q ss_pred CceeeccCHHHHHHHHHHh
Q 031586 97 KQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 97 gklfGsVt~~dI~~~l~~~ 115 (157)
|++-|.||..||..++.++
T Consensus 105 ~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 105 DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp TEEEEEEEHHHHHHHHC--
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 8999999999999988653
No 50
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=25.65 E-value=47 Score=25.31 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.1
Q ss_pred CCCCceeeccCHHHHHHHHHHhc
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~~ 116 (157)
.++|++-|.||..||.+++..+.
T Consensus 265 d~~g~~~Giit~~Dil~~l~~~~ 287 (296)
T 3ddj_A 265 NKDNTIRGIITERDLLIALHHIL 287 (296)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHHHHHHHHh
Confidence 46889999999999999998763
No 51
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=25.23 E-value=48 Score=25.87 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.4
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.+.+...
T Consensus 239 d~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 239 DYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4678999999999999998765
No 52
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=24.63 E-value=53 Score=22.26 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=20.0
Q ss_pred eEEEEec--ccccccCCCcEEEecCcccccc
Q 031586 10 IQIILKE--DVAELGKKGQLLDVKAGFYRNY 38 (157)
Q Consensus 10 mkVIL~~--dV~~lGk~Gdvv~Vk~GyaRN~ 38 (157)
++..|=. +.+ .=..||+|.++.||.+.|
T Consensus 48 I~~t~W~~~~~~-~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 48 IKFTIWKNAELP-LLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp EEEEEEGGGCCC-CCCTTCEEEEEEEEEEEE
T ss_pred EEEEEECccccc-ccCCCCEEEEEEEEEEEE
Confidence 4444444 233 448899999999999887
No 53
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=23.74 E-value=31 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.1
Q ss_pred CCCCceeeccCHHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIKA 114 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~ 114 (157)
.++|++.|.||..||.+++..
T Consensus 108 d~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 108 NKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp CTTSCEEEEEEHHHHHSCHHH
T ss_pred cCCCcEEEEEEHHHHHHHHHH
Confidence 357899999999999876543
No 54
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=23.72 E-value=52 Score=22.44 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCceeeccCHHHHHHHHHHhc
Q 031586 96 GKQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 96 ~gklfGsVt~~dI~~~l~~~~ 116 (157)
+|++-|.||..||.+++....
T Consensus 117 ~g~~~Giit~~dil~~l~~~~ 137 (157)
T 4fry_A 117 GGKLIGLISIGDLVKSVIADQ 137 (157)
T ss_dssp TTEEEEEEEHHHHHHHHHTTC
T ss_pred CCEEEEEEEHHHHHHHHHHHH
Confidence 589999999999999998763
No 55
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=23.51 E-value=47 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.1
Q ss_pred CCCCceeeccCHHHHHHHHHH
Q 031586 94 GKGKQIFGSVTAQDVVDIIKA 114 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~ 114 (157)
+++|++.|.||..||...+.+
T Consensus 68 d~~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 68 DDDMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp CTTCBEEEEEEHHHHHHHHCS
T ss_pred CCCCcEEEEecHHHHHHHHhc
Confidence 457899999999999988764
No 56
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=23.47 E-value=79 Score=23.22 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.8
Q ss_pred CCCCceeeccCHHHHHHHHHHhcC
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQLQ 117 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~~g 117 (157)
.++|++.|.||..||...+....+
T Consensus 110 d~~g~lvGiit~~Dil~~~~~~~~ 133 (213)
T 1vr9_A 110 DEEMRLKGAVSLHDFLEALIEALA 133 (213)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHSCC
T ss_pred cCCCEEEEEEEHHHHHHHHHHHhc
Confidence 356899999999999999876543
No 57
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=23.44 E-value=36 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCceeeccCHHHHHHHHHHh
Q 031586 96 GKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 96 ~gklfGsVt~~dI~~~l~~~ 115 (157)
+|++-|.||..||..++.+.
T Consensus 113 ~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 113 DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TTEEEEEEEHHHHHHHHHC-
T ss_pred CCEEEEEEEHHHHHHHHHhc
Confidence 47999999999999998654
No 58
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=23.34 E-value=36 Score=26.32 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=17.2
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.+.+...
T Consensus 237 d~~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 237 DEEGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp CTTSBEEEEEEHHHHHHHC---
T ss_pred eCCCeEEEEEEHHHHHHHHHHH
Confidence 4678999999999999988654
No 59
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=22.98 E-value=39 Score=23.31 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=17.7
Q ss_pred ceeeccCHHHHHHHHHHhcC
Q 031586 98 QIFGSVTAQDVVDIIKAQLQ 117 (157)
Q Consensus 98 klfGsVt~~dI~~~l~~~~g 117 (157)
++-|.||..||..++.+...
T Consensus 128 ~~vGiit~~dil~~l~~~~~ 147 (159)
T 3fv6_A 128 EVIGRVTKTNMTKILVSLSE 147 (159)
T ss_dssp EEEEEEEHHHHHHHHHHHHT
T ss_pred eEEEEEEHHHHHHHHHHHhh
Confidence 99999999999999987643
No 60
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=22.82 E-value=79 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.0
Q ss_pred CCCCceeeccCHHHHHHHHHHh
Q 031586 94 GKGKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 94 ~~~gklfGsVt~~dI~~~l~~~ 115 (157)
.++|++-|.||..||.++|...
T Consensus 300 d~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 300 DDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCcEEEEEEHHHHHHHHHhc
Confidence 4678999999999999998753
No 61
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=22.80 E-value=47 Score=22.97 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.1
Q ss_pred CceeeccCHHHHHHHHHHh
Q 031586 97 KQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 97 gklfGsVt~~dI~~~l~~~ 115 (157)
|++-|.||..||...+.+.
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 8999999999999988765
No 62
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=22.74 E-value=24 Score=22.21 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=28.0
Q ss_pred CCcCCceEEEEecccccccCCCcEEEecCcc-ccccccCCCceEecCHHHHHHHHH
Q 031586 4 MNKKTQIQIILKEDVAELGKKGQLLDVKAGF-YRNYLHPMGKAQIVTPLLLKEMKM 58 (157)
Q Consensus 4 ~~kkk~mkVIL~~dV~~lGk~Gdvv~Vk~Gy-aRN~LiP~glA~~at~~nl~~~~~ 58 (157)
|++| +.|.|..|+.|-+...+.|. =|+ +.+|- +=.+.+|.++|..
T Consensus 1 MA~k--~~v~lvDDlDG~~~a~eTV~--F~ldG~~Ye------IDLs~~nA~~lr~ 46 (61)
T 4e1p_A 1 MAKK--VTVTLVDDFDGSGAADETVE--FGLDGVTYE------IDLSTKNATKLRG 46 (61)
T ss_dssp ---C--CCCCCBCTTTSSSBCCEEEE--EEETTEEEE------EEECHHHHHHHHH
T ss_pred CCcE--EEEEEEEcCCCCCcCCcEEE--EEECCEEEE------EECCHHHHHHHHH
Confidence 7774 78899999998777776543 232 33343 3468888777753
No 63
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=22.66 E-value=41 Score=22.38 Aligned_cols=20 Identities=15% Similarity=0.471 Sum_probs=16.2
Q ss_pred CceeeccCHHHHHHHHHHhc
Q 031586 97 KQIFGSVTAQDVVDIIKAQL 116 (157)
Q Consensus 97 gklfGsVt~~dI~~~l~~~~ 116 (157)
-.|||+|+..++...|...+
T Consensus 8 R~LFG~vd~eEl~~~f~~~l 27 (84)
T 1jsu_C 8 RNLFGPVDHEELTRDLEKHC 27 (84)
T ss_dssp CCSSCCCCHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHH
Confidence 46999999999988777653
No 64
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=22.21 E-value=1e+02 Score=25.81 Aligned_cols=56 Identities=9% Similarity=0.219 Sum_probs=36.9
Q ss_pred eEEEEEecC---CCCceeeccCHHHHHHHHHHhcCCCccCccc---c-ccCccceeeEEEEEEeCC
Q 031586 86 AFKVKRKGG---KGKQIFGSVTAQDVVDIIKAQLQRDVDKKIV---D-LPEIRETGEYIAQLKLHP 144 (157)
Q Consensus 86 ~l~i~~k~~---~~gklfGsVt~~dI~~~l~~~~gi~i~k~~I---~-l~~Ik~~G~~~v~v~l~~ 144 (157)
+++|+.+-| .||. .+|++|+.-.+.......-..... . +..|+.++.|+|+|+|..
T Consensus 62 t~tf~LR~gvkf~DG~---p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~v~~~d~~Tv~i~l~~ 124 (502)
T 2noo_A 62 TWTFTLRDDVKFSNGE---PFDAEAAAENFRAVLDNRQAHAALELANQIVDVKALSKTELQITLKS 124 (502)
T ss_dssp EEEEEECSSCBCTTSC---BCCHHHHHHHHHHHHTTGGGGTTSHHHHHEEEEEECSSSEEEEEESS
T ss_pred EEEEEECCCCEecCcC---CCCHHHHHHHHHHHhcCCCCcchhhhccccceEEEcCCCEEEEEECC
Confidence 688887765 4565 799999998887643321111111 1 234888899999999864
No 65
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=22.13 E-value=1.4e+02 Score=25.03 Aligned_cols=56 Identities=30% Similarity=0.444 Sum_probs=37.7
Q ss_pred eEEEEEecC---CCCceeeccCHHHHHHHHHHhcCCCccC---cccc-ccCccceeeEEEEEEeCC
Q 031586 86 AFKVKRKGG---KGKQIFGSVTAQDVVDIIKAQLQRDVDK---KIVD-LPEIRETGEYIAQLKLHP 144 (157)
Q Consensus 86 ~l~i~~k~~---~~gklfGsVt~~dI~~~l~~~~gi~i~k---~~I~-l~~Ik~~G~~~v~v~l~~ 144 (157)
+++|+.+-| .||. .+|++|+.-.+.....-.... ..+. +..|+.++.|+|.|+|..
T Consensus 81 t~tf~LR~gv~f~DG~---p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~v~~~d~~Tv~i~l~~ 143 (520)
T 1xoc_A 81 AYDVKIKKGVKFHDGK---ELTADDVVFTYSVPLSKDYKGERGSTYEMLKSVEKKGDYEVLFKLKY 143 (520)
T ss_dssp EEEEEECSSCBCTTSC---BCCHHHHHHHHHGGGSTTCCCSCGGGTTTEEEEEEEETTEEEEEESS
T ss_pred EEEEEECCCCEeCCCC---ccCHHHHHHHHHHHhCCCCCccccccccccceEEEccCCEEEEEeCC
Confidence 688888765 4565 799999999997653322111 1111 224788899999999864
No 66
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=22.03 E-value=54 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.5
Q ss_pred CCceeeccCHHHHHHHHHHhcC
Q 031586 96 GKQIFGSVTAQDVVDIIKAQLQ 117 (157)
Q Consensus 96 ~gklfGsVt~~dI~~~l~~~~g 117 (157)
+|++-|.||..||..++.+...
T Consensus 147 ~g~~vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 147 NGRLLGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp TTEEEEEEEHHHHHHHHHHHCC
T ss_pred CCEEEEEEEHHHHHHHHHHhhc
Confidence 6899999999999999987744
No 67
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=21.92 E-value=1.1e+02 Score=19.43 Aligned_cols=31 Identities=23% Similarity=0.568 Sum_probs=20.3
Q ss_pred ccccC--ccceeeEEEEEEeCCCc---EEEEEEEEe
Q 031586 125 VDLPE--IRETGEYIAQLKLHPEV---TARIRLNVF 155 (157)
Q Consensus 125 I~l~~--Ik~~G~~~v~v~l~~~v---~~~l~v~V~ 155 (157)
+.+.+ ...-|.|.+.+.-..+. .+.+.|.|.
T Consensus 83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (124)
T 1neu_A 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (124)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEe
Confidence 44443 67899999999977654 667777775
No 68
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=21.83 E-value=68 Score=19.67 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.8
Q ss_pred ccCHHHHHHHHHHhcCCCccCccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIV 125 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I 125 (157)
|+..-++...|.+.||++++...+
T Consensus 38 Sl~~vel~~~le~~fgi~i~~~~~ 61 (82)
T 2ava_A 38 SLDTVEIVMNLEEEFGINVDEDKA 61 (82)
T ss_dssp CSCHHHHHHHHHHHTTCCCCGGGS
T ss_pred HHHHHHHHHHHHHHHCCccCHHHH
Confidence 999999999999999999987654
No 69
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=21.78 E-value=27 Score=22.37 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=15.5
Q ss_pred CceeeccCHHHHHHHHHH
Q 031586 97 KQIFGSVTAQDVVDIIKA 114 (157)
Q Consensus 97 gklfGsVt~~dI~~~l~~ 114 (157)
|.+||.||++++.+.|.+
T Consensus 67 ~~~y~~vt~e~v~~il~~ 84 (85)
T 2auv_A 67 EKVYGNVTPGQVKKILAE 84 (85)
T ss_dssp GGCCCCSSSSHHHHHHHH
T ss_pred CEEECCCCHHHHHHHHHh
Confidence 689999999999888754
No 70
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=21.75 E-value=1.1e+02 Score=19.18 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=21.1
Q ss_pred ccceeeEEEEEEeCCC---cEEEEEEEEee
Q 031586 130 IRETGEYIAQLKLHPE---VTARIRLNVFA 156 (157)
Q Consensus 130 Ik~~G~~~v~v~l~~~---v~~~l~v~V~~ 156 (157)
...-|.|.+.+.-..+ ..+.+.|.|.+
T Consensus 82 ~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p 111 (116)
T 2or8_A 82 ESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111 (116)
T ss_dssp GGGCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred cccCEEEEEEEEcCCcccccEEEEEEEECC
Confidence 6799999999987553 37788888865
No 71
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=21.67 E-value=18 Score=24.39 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHhcCCCccCcccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIVD 126 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I~ 126 (157)
|+..-+++-.|.+.||++|+...+.
T Consensus 57 SL~~veLv~~lE~~fgI~i~~~~l~ 81 (105)
T 2jq4_A 57 SFASVQLMLGIEEAFDIEFPDNLLN 81 (105)
T ss_dssp HHHHHHHHHHHHHHHSCCCCHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCcCHHHhh
Confidence 8888999999999999999987764
No 72
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=21.51 E-value=60 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=28.8
Q ss_pred cCCCcEEEecCccccc----cccCCCceEe--cCHHHHHHHH
Q 031586 22 GKKGQLLDVKAGFYRN----YLHPMGKAQI--VTPLLLKEMK 57 (157)
Q Consensus 22 Gk~Gdvv~Vk~GyaRN----~LiP~glA~~--at~~nl~~~~ 57 (157)
..+|....++-||+-| +|.|.|+-.. -+...|+.+.
T Consensus 46 rfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~NvkeLe~L~ 87 (133)
T 3iz5_h 46 KFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLM 87 (133)
T ss_dssp TCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHHHHHHH
T ss_pred cccCCcCCCccCCCCChhhcccCCCCCeEEEeCCHHHHHHHh
Confidence 5688999999999988 8999999775 4666666553
No 73
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=21.15 E-value=26 Score=23.07 Aligned_cols=32 Identities=6% Similarity=0.230 Sum_probs=25.5
Q ss_pred eccCHHHHHHHHHHhcCCCccCccccccCcccee
Q 031586 101 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 134 (157)
Q Consensus 101 GsVt~~dI~~~l~~~~gi~i~k~~I~l~~Ik~~G 134 (157)
-|+..-+++-+|.+.||+.|+...+. .++++|
T Consensus 35 DSL~~veli~~lE~eF~I~i~~ed~~--~~~Tv~ 66 (87)
T 2kci_A 35 DSLSHMNLIVSLEVHYKIKFALGELQ--KLKNVG 66 (87)
T ss_dssp CSTHHHHHHHHHHHHHTCCCCHHHHT--TCCSHH
T ss_pred ChHHHHHHHHHHHHHHCCccCHHHHH--hCCCHH
Confidence 49999999999999999999876653 355554
No 74
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.08 E-value=27 Score=22.76 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred ccCHHHHHHHHHHhcCCCccCccc
Q 031586 102 SVTAQDVVDIIKAQLQRDVDKKIV 125 (157)
Q Consensus 102 sVt~~dI~~~l~~~~gi~i~k~~I 125 (157)
+.|-+.|++.|+++ |+.|-++.|
T Consensus 37 PlSD~~I~~~L~~~-Gi~IaRRTV 59 (76)
T 2ahq_A 37 PYSDQEIANILKEK-GFKVARRTV 59 (76)
T ss_dssp CCCHHHHHHHHTTT-SSCCCHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHH
Confidence 68999999999988 999988765
No 75
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=20.78 E-value=1.6e+02 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=37.5
Q ss_pred eEEEEEecC---CCCceeeccCHHHHHHHHHHhcCCCccC------------------ccc----cccCccceeeEEEEE
Q 031586 86 AFKVKRKGG---KGKQIFGSVTAQDVVDIIKAQLQRDVDK------------------KIV----DLPEIRETGEYIAQL 140 (157)
Q Consensus 86 ~l~i~~k~~---~~gklfGsVt~~dI~~~l~~~~gi~i~k------------------~~I----~l~~Ik~~G~~~v~v 140 (157)
+++|+.+-| .||. .||++|+.-.+.+...-.... ... .+..|+.++.|+|.|
T Consensus 98 t~tf~LR~gvkf~DG~---p~TA~DV~~s~~r~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~i~~v~~~D~~Tv~i 174 (562)
T 2wol_A 98 TWTYRLRRGLRYDDGT---PITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVF 174 (562)
T ss_dssp EEEEEBCSSCBCTTSC---BCCHHHHHHHHHHHTCTTTSTTSCCTHHHHHCCTTSCCCCTTTCCSCCTTEEEEETTEEEE
T ss_pred EEEEEECCCCEecCCC---cccHHHHHHHHhhhccCcccCCchhhhhhhccCchhhccccccccCCcceEEecCCCEEEE
Confidence 688887765 4565 799999999988653322100 000 123488899999999
Q ss_pred EeCC
Q 031586 141 KLHP 144 (157)
Q Consensus 141 ~l~~ 144 (157)
+|..
T Consensus 175 ~l~~ 178 (562)
T 2wol_A 175 RLTR 178 (562)
T ss_dssp ECSS
T ss_pred EECC
Confidence 9864
No 76
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=20.41 E-value=10 Score=26.86 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=17.0
Q ss_pred CCceeeccCHHHHHHHHHHh
Q 031586 96 GKQIFGSVTAQDVVDIIKAQ 115 (157)
Q Consensus 96 ~gklfGsVt~~dI~~~l~~~ 115 (157)
+|++-|.||..||.++|..+
T Consensus 144 ~g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 144 DGVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp TTEEEEEEEHHHHTTTSCCC
T ss_pred CCEEEEEEEHHHHHHHHHhc
Confidence 58999999999999887543
No 77
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=20.09 E-value=51 Score=22.78 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.0
Q ss_pred eccCHHHHHHHHHHhcCCC
Q 031586 101 GSVTAQDVVDIIKAQLQRD 119 (157)
Q Consensus 101 GsVt~~dI~~~l~~~~gi~ 119 (157)
|.||..++.++|++++|+.
T Consensus 47 g~i~e~~l~~~la~~~g~p 65 (149)
T 2d28_C 47 GLVSERDHAETCAEVLGLP 65 (149)
T ss_dssp TCSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHhhCCc
Confidence 5799999999999999963
Done!