BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031587
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/119 (72%), Positives = 99/119 (83%)
Query: 37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
+DSVGT+ ASL+T+ASIQALKPD+IIN +IGDVFL+SDV FHDRRIPIP
Sbjct: 87 IDSVGTVPASLITFASIQALKPDIIINAGTCGGFKVKGANIGDVFLVSDVVFHDRRIPIP 146
Query: 97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRA 155
+FDLYGVG RQAFSTPNLL+ELNLK+ +LSTGDSLDMS+QDET I ANDAT+KDME A
Sbjct: 147 MFDLYGVGLRQAFSTPNLLKELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAA 205
>pdb|3BSF|A Chain A, Crystal Structure Of The MtaSAH NUCLEOSIDASE
pdb|3BSF|B Chain B, Crystal Structure Of The MtaSAH NUCLEOSIDASE
Length = 254
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 90/116 (77%)
Query: 37 VDSVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHDRRIPIP 96
V+SVGT+ ASLVTYASI A++PDLIIN I DV+++S VAFHDRRIP+P
Sbjct: 74 VESVGTVPASLVTYASILAIQPDLIINAGTAGGFKAKGACISDVYVVSTVAFHDRRIPVP 133
Query: 97 VFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDME 152
V D+YGVG R F TPNL++ELNLKV +LSTGDS+DMS DE SITANDAT+KDME
Sbjct: 134 VLDIYGVGMRNTFPTPNLIKELNLKVGRLSTGDSMDMSPHDEESITANDATVKDME 189
>pdb|4GMH|A Chain A, Crystal Structure Of Staphylococcus Aureus
5'-MethylthioadenosineS- Adenosylhomocysteine
Nucleosidase
Length = 230
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 40 VGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 90
+G ++A++ T I KPD+IIN ++GDV + DV +HD
Sbjct: 51 IGKVNAAISTTLLINKFKPDVIIN-TGSAGALDESLNVGDVLISDDVKYHD 100
>pdb|3BL6|A Chain A, Crystal Structure Of Staphylococcus Aureus 5'-
MethylthioadenosineS-Adenosylhomocysteine Nucleosidase
In Complex With Formycin A
Length = 230
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 40 VGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 90
+G ++A++ T I KPD+IIN ++GDV + DV +HD
Sbjct: 51 IGKVNAAISTTLLINKFKPDVIIN-TGSAGALDESLNVGDVLISDDVKYHD 100
>pdb|3DP9|A Chain A, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
pdb|3DP9|C Chain C, Crystal Structure Of Vibrio Cholerae
5'-methylthioadenosine/s-adenosyl Homocysteine
Nucleosidase (mtan) Complexed With Butylthio-dadme-
Immucillin A
Length = 231
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 39 SVGTISASLVTYASIQALKPDLIINXXXXXXXXXXXXSIGDVFLISDVAFHD 90
+G +SA+L T I PD++IN ++GDV + S+V HD
Sbjct: 49 GIGKVSAALGTALLISQYAPDVVIN-TGSAGGFDASLNVGDVVISSEVRHHD 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,851,896
Number of Sequences: 62578
Number of extensions: 120656
Number of successful extensions: 176
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 10
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)