Query 031587
Match_columns 157
No_of_seqs 142 out of 1113
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 1.4E-29 3E-34 198.5 13.8 143 11-157 16-178 (228)
2 PRK14697 bifunctional 5'-methy 100.0 2.9E-29 6.3E-34 197.4 13.7 143 11-157 18-177 (233)
3 PRK06714 S-adenosylhomocystein 100.0 4.2E-29 9.1E-34 196.9 14.1 143 12-157 19-178 (236)
4 PLN02584 5'-methylthioadenosin 100.0 2.4E-28 5.3E-33 193.9 13.0 136 22-157 41-189 (249)
5 PRK06698 bifunctional 5'-methy 100.0 9.9E-28 2.1E-32 204.6 14.0 143 11-157 18-177 (459)
6 PRK07164 5'-methylthioadenosin 99.9 4.1E-27 8.8E-32 183.6 13.1 133 16-157 26-167 (218)
7 PRK05584 5'-methylthioadenosin 99.9 3.7E-26 8E-31 178.7 13.8 143 11-157 17-179 (230)
8 PRK13374 purine nucleoside pho 99.9 3.9E-26 8.5E-31 179.7 12.4 133 20-157 41-187 (233)
9 PRK11178 uridine phosphorylase 99.9 6.9E-26 1.5E-30 180.1 12.2 130 21-157 44-201 (251)
10 TIGR01718 Uridine-psphlse urid 99.9 9.5E-26 2.1E-30 178.7 11.4 118 30-157 55-195 (245)
11 PRK05819 deoD purine nucleosid 99.9 4.2E-25 9.1E-30 174.0 13.2 129 21-157 41-186 (235)
12 COG0775 Pfs Nucleoside phospho 99.9 2.4E-25 5.2E-30 175.3 11.6 126 25-157 40-182 (234)
13 PRK08236 hypothetical protein; 99.9 6.5E-25 1.4E-29 170.6 13.2 121 29-156 26-166 (212)
14 PRK07115 AMP nucleosidase; Pro 99.9 1E-24 2.3E-29 173.8 12.7 118 30-157 62-190 (258)
15 TIGR00107 deoD purine-nucleosi 99.9 2.2E-24 4.8E-29 169.6 12.6 131 22-157 39-183 (232)
16 TIGR03664 fut_nucase futalosin 99.9 2.8E-24 6.2E-29 168.0 12.1 125 29-157 30-177 (222)
17 TIGR01721 AMN-like AMP nucleos 99.9 1.3E-23 2.8E-28 167.8 13.2 120 29-157 61-191 (266)
18 PRK06026 5'-methylthioadenosin 99.9 2.3E-23 5E-28 161.4 9.9 115 29-156 30-153 (212)
19 TIGR01705 MTA/SAH-nuc-hyp 5'-m 99.9 6E-23 1.3E-27 158.9 11.1 108 30-156 31-153 (212)
20 PRK08292 AMP nucleosidase; Pro 99.9 1.1E-21 2.5E-26 166.4 13.3 118 30-157 278-415 (489)
21 PF01048 PNP_UDP_1: Phosphoryl 99.9 2.3E-21 5E-26 151.0 10.5 124 30-157 44-181 (234)
22 TIGR01719 euk_UDPppase uridine 99.9 3E-21 6.5E-26 156.1 10.6 119 30-157 80-233 (287)
23 PRK05634 nucleosidase; Provisi 99.9 3.5E-21 7.6E-26 146.8 10.3 111 30-157 23-138 (185)
24 TIGR01717 AMP-nucleosdse AMP n 99.9 7.4E-21 1.6E-25 161.0 13.2 118 30-157 266-403 (477)
25 COG0813 DeoD Purine-nucleoside 99.8 5.5E-21 1.2E-25 146.9 10.3 120 30-157 58-187 (236)
26 COG2820 Udp Uridine phosphoryl 99.8 6.7E-21 1.4E-25 148.2 8.8 118 30-157 60-198 (248)
27 TIGR03468 HpnG hopanoid-associ 99.8 7.4E-21 1.6E-25 147.8 8.8 114 29-157 21-138 (212)
28 TIGR01697 PNPH-PUNA-XAPA inosi 99.8 9.6E-19 2.1E-23 138.9 13.5 123 30-157 53-195 (248)
29 TIGR01700 PNPH purine nucleosi 99.8 3.2E-18 6.9E-23 136.0 12.3 121 30-156 53-194 (249)
30 PRK07077 hypothetical protein; 99.8 4.2E-18 9E-23 134.3 11.4 105 40-156 37-148 (238)
31 TIGR01694 MTAP 5'-deoxy-5'-met 99.8 3.2E-18 6.9E-23 135.3 10.4 118 33-157 49-187 (241)
32 PRK08666 5'-methylthioadenosin 99.7 3.4E-17 7.4E-22 130.8 11.1 136 15-156 23-188 (261)
33 PRK08202 purine nucleoside pho 99.7 3E-16 6.5E-21 126.2 13.4 119 30-156 75-216 (272)
34 PRK09136 5'-methylthioadenosin 99.5 1.8E-13 4E-18 108.5 12.2 115 32-155 48-187 (245)
35 TIGR01699 XAPA xanthosine phos 99.5 1.1E-13 2.5E-18 109.8 9.8 118 34-156 56-194 (248)
36 KOG3728 Uridine phosphorylase 98.2 1.1E-05 2.3E-10 63.5 8.0 116 30-154 101-251 (308)
37 PRK08564 5'-methylthioadenosin 98.0 7.4E-05 1.6E-09 60.2 9.8 99 51-153 77-192 (267)
38 COG0005 Pnp Purine nucleoside 97.7 0.00034 7.3E-09 56.0 8.6 105 42-153 81-204 (262)
39 PRK08931 5'-methylthioadenosin 97.6 0.00048 1E-08 56.1 9.5 98 51-153 73-187 (289)
40 TIGR01698 PUNP purine nucleoti 97.6 0.001 2.2E-08 52.7 11.0 105 42-153 67-180 (237)
41 KOG3985 Methylthioadenosine ph 97.6 0.0012 2.6E-08 51.9 10.4 62 28-91 54-118 (283)
42 PRK07432 5'-methylthioadenosin 97.5 0.0019 4E-08 52.7 10.6 99 51-153 73-190 (290)
43 PRK07823 5'-methylthioadenosin 97.3 0.0027 5.8E-08 51.1 9.3 97 52-153 75-182 (264)
44 PF06516 NUP: Purine nucleosid 97.0 0.0014 3.1E-08 53.8 5.6 75 17-92 25-110 (314)
45 COG5042 NUP Purine nucleoside 94.1 0.039 8.6E-07 44.8 2.6 75 16-91 59-143 (349)
46 KOG3984 Purine nucleoside phos 92.0 1 2.2E-05 35.9 7.5 99 50-153 100-221 (286)
47 PRK13195 pyrrolidone-carboxyla 73.4 4.3 9.4E-05 31.9 3.3 32 45-78 49-80 (222)
48 COG2039 Pcp Pyrrolidone-carbox 73.3 10 0.00022 29.3 5.2 46 30-80 36-81 (207)
49 PF01470 Peptidase_C15: Pyrogl 72.8 13 0.00029 28.5 5.9 29 43-71 46-74 (202)
50 PRK13196 pyrrolidone-carboxyla 68.0 15 0.00032 28.6 5.2 27 45-71 49-75 (211)
51 PRK13193 pyrrolidone-carboxyla 61.5 12 0.00027 29.0 3.7 28 44-71 47-74 (209)
52 PRK13194 pyrrolidone-carboxyla 61.1 12 0.00026 29.0 3.6 28 44-71 47-74 (208)
53 TIGR00504 pyro_pdase pyrogluta 53.4 18 0.0004 28.0 3.5 27 45-71 46-72 (212)
54 cd00501 Peptidase_C15 Pyroglut 47.4 26 0.00057 26.5 3.5 27 45-71 48-74 (194)
55 PRK13197 pyrrolidone-carboxyla 45.7 30 0.00065 26.9 3.6 27 45-71 49-75 (215)
56 PF01141 Gag_p12: Gag polyprot 45.5 8.9 0.00019 25.3 0.5 14 2-15 19-32 (85)
57 PF04989 CmcI: Cephalosporin h 41.5 28 0.0006 27.1 2.8 25 45-69 20-44 (206)
58 COG3260 Ni,Fe-hydrogenase III 37.0 82 0.0018 23.1 4.4 36 31-69 52-88 (148)
59 PRK00994 F420-dependent methyl 36.5 1E+02 0.0022 24.8 5.2 41 30-71 34-74 (277)
60 COG1927 Mtd Coenzyme F420-depe 35.2 95 0.0021 24.6 4.8 42 29-71 33-74 (277)
61 PRK09548 PTS system ascorbate- 33.8 1.7E+02 0.0037 26.6 6.8 57 28-88 508-565 (602)
62 PRK10310 PTS system galactitol 32.0 1.5E+02 0.0034 19.6 5.3 58 29-90 5-63 (94)
63 PRK15116 sulfur acceptor prote 31.7 56 0.0012 26.3 3.2 42 40-81 129-170 (268)
64 PF02374 ArsA_ATPase: Anion-tr 31.3 76 0.0017 25.9 4.0 35 39-79 11-45 (305)
65 PF12641 Flavodoxin_3: Flavodo 30.6 59 0.0013 24.0 3.0 41 28-71 40-80 (160)
66 cd00755 YgdL_like Family of ac 28.0 94 0.002 24.4 3.8 41 40-80 110-150 (231)
67 TIGR00853 pts-lac PTS system, 27.8 1.9E+02 0.0041 19.2 4.9 56 30-89 7-62 (95)
68 PF02302 PTS_IIB: PTS system, 26.8 86 0.0019 20.0 3.0 56 30-89 3-59 (90)
69 COG0003 ArsA Predicted ATPase 25.2 2E+02 0.0043 23.9 5.4 38 38-81 11-48 (322)
70 TIGR01957 nuoB_fam NADH-quinon 24.8 1.9E+02 0.0042 21.1 4.7 31 40-70 66-97 (145)
71 PF01583 APS_kinase: Adenylyls 23.5 2.4E+02 0.0052 20.8 5.1 34 31-64 4-37 (156)
72 COG0681 LepB Signal peptidase 23.4 53 0.0011 23.5 1.6 23 67-90 38-60 (166)
73 cd05564 PTS_IIB_chitobiose_lic 22.9 2.4E+02 0.0051 18.7 4.6 56 30-89 3-58 (96)
74 PRK13236 nitrogenase reductase 22.3 2.1E+02 0.0045 23.0 5.0 27 37-63 14-40 (296)
75 COG0799 Uncharacterized homolo 21.8 1.8E+02 0.0039 20.5 3.9 61 19-83 24-88 (115)
76 TIGR02227 sigpep_I_bact signal 21.3 1.4E+02 0.003 21.8 3.5 41 45-88 7-47 (163)
77 KOG1374 Gamma tubulin [Cytoske 21.2 1.8E+02 0.0038 25.1 4.4 33 46-82 151-183 (448)
78 PRK14818 NADH dehydrogenase su 21.1 1.6E+02 0.0035 22.3 3.8 29 40-68 79-108 (173)
79 PRK14813 NADH dehydrogenase su 20.6 2.1E+02 0.0046 22.0 4.4 31 40-70 76-107 (189)
No 1
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=99.97 E-value=1.4e-29 Score=198.46 Aligned_cols=143 Identities=25% Similarity=0.333 Sum_probs=116.3
Q ss_pred ccccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecce
Q 031587 11 VGHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~ 86 (157)
..++...+++.+++++||.+.+....| +|||++|||+++++||++|+|+.||++|+|||++ +++++||+||++++
T Consensus 16 ~~~l~~~~~~~~~~~~~~~g~~~g~~v~i~~sGiG~vnAA~~~~~li~~~~p~~II~~G~aG~l~-~~l~~GDvvi~~~~ 94 (228)
T TIGR01704 16 RDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLA-PTLKVGDIVVSDEA 94 (228)
T ss_pred HHHhhcCceEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEEeeccCCC-CCCccCCEEEEEEE
Confidence 345666778889999999754433333 4499999999999999999999999999999999 89999999999999
Q ss_pred EEecCCCCccCccccCCCCCCCCC-----ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEe
Q 031587 87 AFHDRRIPIPVFDLYGVGQRQAFS-----TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKD 150 (157)
Q Consensus 87 ~~~d~~~~~~~f~~~~~~~~p~~~-----~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vd 150 (157)
+++|.+.+ .| .|.+++.|..| +++|. .+.+++.|+++|+|.|+.+++++++|++ + ++.++|
T Consensus 95 ~~~d~~~~--~~-~~~~g~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~i~T~d~f~~~~~~~~~l~~~~~~~~~vd 171 (228)
T TIGR01704 95 RYHDADVT--AF-GYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVE 171 (228)
T ss_pred EEccCccc--cc-CCcCCcCCCCCceeeCCHHHHHHHHHHHHhcCCCeEEEEEEEcChhcCCHHHHHHHHHHCCcccEec
Confidence 99998765 45 36666665433 33332 2467999999999999999988888885 6 899999
Q ss_pred ccccccC
Q 031587 151 MEVRAEF 157 (157)
Q Consensus 151 ME~aav~ 157 (157)
||+||++
T Consensus 172 ME~aAva 178 (228)
T TIGR01704 172 MEATAIA 178 (228)
T ss_pred ccHHHHH
Confidence 9999973
No 2
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=99.96 E-value=2.9e-29 Score=197.39 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=110.8
Q ss_pred ccccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecce
Q 031587 11 VGHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~ 86 (157)
+.++...++++.++++||.+.+....| ||||++|||+++++||++|+|+.||++|+|||++ +++++||+||++++
T Consensus 18 ~~~l~~~~~~~~~~~~~~~G~~~g~~v~v~~sGiG~vnAA~~~~~li~~f~~~~II~~G~AG~l~-~~l~iGDvVi~~~~ 96 (233)
T PRK14697 18 LEKLVVQEEQIIAGMPFYVGEFMGTEVIVTRCGVGKVNAAACTQTLIHKFDVDAIINTGVAGGLH-PDVKVGDIVISTNV 96 (233)
T ss_pred HHHhhccceEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhcCCCEEEEEecccCCC-CCCCcCCEEEECee
Confidence 345566778889999999854433333 4499999999999999999999999999999999 89999999999999
Q ss_pred EEecCCCCccCccccCCCCCCCCC-ChhHh-----------hcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEeccc
Q 031587 87 AFHDRRIPIPVFDLYGVGQRQAFS-TPNLL-----------RELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEV 153 (157)
Q Consensus 87 ~~~d~~~~~~~f~~~~~~~~p~~~-~~~l~-----------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~ 153 (157)
++||.+.+ .+..+.+ ..+.++ +.+|. .+++++.|+++|+|.|+.+++.+++|++ +++.++|||+
T Consensus 97 ~~~D~~~~--~~~~~~p-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~i~SgD~fi~~~~~~~~l~~~~~~~~vdME~ 173 (233)
T PRK14697 97 THHDVSKT--QMKNLFP-FQEEFIASKELVELARKACNSSSLHIEIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTEMEG 173 (233)
T ss_pred EEcCCChh--hhcccCC-CCcccCCCHHHHHHHHHHhhhccCCccEEEeEEEEcCeecCCHHHHHHHHHhcCCeEEEehH
Confidence 99998643 1111111 111232 33331 1357899999999999999888888875 7999999999
Q ss_pred cccC
Q 031587 154 RAEF 157 (157)
Q Consensus 154 aav~ 157 (157)
||++
T Consensus 174 aAva 177 (233)
T PRK14697 174 AAIG 177 (233)
T ss_pred HHHH
Confidence 9973
No 3
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=99.96 E-value=4.2e-29 Score=196.87 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=110.5
Q ss_pred cccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceE
Q 031587 12 GHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVA 87 (157)
Q Consensus 12 ~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~ 87 (157)
.++...+..+.++++||.+.+....| |||||+|||++++.||++|+|+.|||+|+|||++ +++++||+||+++++
T Consensus 19 ~~l~~~~~~~~~~~~~~~g~~~~~~vv~~~sGiGkvnAA~~~~~li~~f~~~~IIn~G~aG~l~-~~l~iGDvVi~~~~~ 97 (236)
T PRK06714 19 QSYPSERIEKRAAWEFHFHTINDLEIISVITGVGKVSCASCVQLLISEFQPDELFMTGICGSLS-NKVKNGHIVVALNAI 97 (236)
T ss_pred HhccccceEEEcCeEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEEEEcccCCC-CCCCCCCEEEECeee
Confidence 34445568889999999755444333 4499999999999999999999999999999999 999999999999999
Q ss_pred EecCCCCccCcc--ccC--CCCCCCCC-ChhHh-------hcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEecccc
Q 031587 88 FHDRRIPIPVFD--LYG--VGQRQAFS-TPNLL-------RELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEVR 154 (157)
Q Consensus 88 ~~d~~~~~~~f~--~~~--~~~~p~~~-~~~l~-------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~a 154 (157)
+||.+.+ .++ .|. .+..+.++ ++.|. ...+++.|+++|+|.|+.+++.++.+.+ ++++++|||+|
T Consensus 98 ~~D~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~SgD~Fv~~~~~~~~l~~~~~a~~vdME~a 175 (236)
T PRK06714 98 QHDVTAA--GSGEDVFNLYNGRTAPIETTKSLVRRIKKIRSYDPIHFGTFLSGDQRIRSSEMRYLLHTVYGALAVDQEVA 175 (236)
T ss_pred eccCccc--cCCcccccccCCccccccCCHHHHHHHHHHhccCCeEEeEEEecCeecCCHHHHHHHHHHCCCeEEEehHH
Confidence 9997654 221 011 11112233 23332 2356899999999999998888877775 79999999999
Q ss_pred ccC
Q 031587 155 AEF 157 (157)
Q Consensus 155 av~ 157 (157)
|++
T Consensus 176 AvA 178 (236)
T PRK06714 176 AFA 178 (236)
T ss_pred HHH
Confidence 973
No 4
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=99.96 E-value=2.4e-28 Score=193.89 Aligned_cols=136 Identities=68% Similarity=0.921 Sum_probs=111.9
Q ss_pred EcCeeEEEE-------EEeecC------CCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEE
Q 031587 22 IHDLFFANL-------NLILSE------VDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (157)
Q Consensus 22 ~~~~~f~~~-------~l~~~g------v~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~ 88 (157)
.+++.+|++ .+..+| +|||||+|||++++++|.+|+|+.|||+|+|||++++++++||+||++++++
T Consensus 41 ~~~~~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~~li~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~ 120 (249)
T PLN02584 41 GVPWVRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTYAAIQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVAN 120 (249)
T ss_pred cCCeeEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHHHHHHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEe
Confidence 456777764 455555 3569999999999999999999999999999999833899999999999999
Q ss_pred ecCCCCccCccccCCCCCCCCCChhHhhcCCceEEeEeecceeeCCHHHHHHHHhCCCcEEeccccccC
Q 031587 89 HDRRIPIPVFDLYGVGQRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 89 ~d~~~~~~~f~~~~~~~~p~~~~~~l~~~~~~~~G~i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav~ 157 (157)
+|.+...+.|..|..++.|.+++..+.....++.|++.|+|+|+.+.++.+.++++++.++|||+||++
T Consensus 121 ~D~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~G~i~SgD~F~~~~~~~~~~~~~~a~~vDME~aAia 189 (249)
T PLN02584 121 HDRRIPIPVFDKYGVGTRDAFPTPNLIKALGLKEGVLSTGNSLDMTEQDEESIKANDATVKDMEGAAVA 189 (249)
T ss_pred cccCCCcccccccccCccccCCCHHHHhhCCCeEEEEEEeCEEeCCHHHHHHHHHcCCcEEechHHHHH
Confidence 997654345544666677767666676667899999999999998877766777789999999999974
No 5
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.95 E-value=9.9e-28 Score=204.57 Aligned_cols=143 Identities=22% Similarity=0.294 Sum_probs=113.3
Q ss_pred ccccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecce
Q 031587 11 VGHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~ 86 (157)
+.++...++++.++++||.+.+....| ||||++|||++++.||++|+|+.||++|+|||++ +++++|||||++++
T Consensus 18 ~~~l~~~~~~~~~~~~~~~G~~~g~~v~v~~sGiG~v~AA~~~~~li~~~~~~~ii~~G~aG~l~-~~l~~gDvvi~~~~ 96 (459)
T PRK06698 18 LEKLIMQEEQIIAGMPFYVGEFMGTEVIVTRCGVGKVNAAACTQTLIHKFDVDAIINTGVAGGLH-PDVKVGDIVISTNV 96 (459)
T ss_pred HHHhhccceEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhcCCCEEEEEecccCCC-CCCcCCCEEEEcee
Confidence 455666778899999999855544444 4599999999999999999999999999999999 89999999999999
Q ss_pred EEecCCCCccCccccCCCCCCCC-CChhHh-----------hcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEeccc
Q 031587 87 AFHDRRIPIPVFDLYGVGQRQAF-STPNLL-----------RELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEV 153 (157)
Q Consensus 87 ~~~d~~~~~~~f~~~~~~~~p~~-~~~~l~-----------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~ 153 (157)
++||.+.+ .++.+.+.. +.+ ++.+|. .+.+++.|+++|+|.|+.+++.+++|++ +++.++|||+
T Consensus 97 ~~~d~~~~--~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~G~i~sgd~f~~~~~~~~~l~~~~~a~~veME~ 173 (459)
T PRK06698 97 THHDVSKT--QMKNLFPFQ-EEFIASKELVELARKACNSSSLHMEIHEGRIVSGECFVEDSKLKAKLIDEYAPHCTEMEG 173 (459)
T ss_pred EEccCCcc--ccCCcCCCC-CCcCCCHHHHHHHHHHHHhccCCccEEEeeEEecCeecCCHHHHHHHHHHcCCcEEehhh
Confidence 99998754 232121111 123 333332 1357999999999999999888888875 7999999999
Q ss_pred cccC
Q 031587 154 RAEF 157 (157)
Q Consensus 154 aav~ 157 (157)
||++
T Consensus 174 aava 177 (459)
T PRK06698 174 AAIG 177 (459)
T ss_pred HHHH
Confidence 9973
No 6
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=99.95 E-value=4.1e-27 Score=183.57 Aligned_cols=133 Identities=21% Similarity=0.229 Sum_probs=107.2
Q ss_pred cceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecC
Q 031587 16 TQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDR 91 (157)
Q Consensus 16 ~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~ 91 (157)
..++....+++||.+.+....| |||||+|||++++.||++|+|+.||++|+|||+ +++++||+|+++++++||.
T Consensus 26 ~~~~~~~~~~~~y~~~~~g~~v~~~~sGiGkv~aa~~~~~lI~~~~~~~iI~~G~aG~l--~~~~~gdvvi~~~~~~~D~ 103 (218)
T PRK07164 26 LLKNIESFQKKIAIFRYKNYNILYINTGIGLINAALATQKLIEKYQIEIIINYGAVGSN--INIDLGQVVYPEKFYLLDA 103 (218)
T ss_pred cceeEEecCceEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHcCCCEEEEEEcccCc--CCCCCCCEEEEeeeEEccc
Confidence 4456778889888855444333 449999999999999999999999999999999 4899999999999999998
Q ss_pred CCCccCccccCCCCCCCCC----ChhHhhcCCceEEeEeecceeeCCHHHHHHHHhC-CCcEEeccccccC
Q 031587 92 RIPIPVFDLYGVGQRQAFS----TPNLLRELNLKVCKLSTGDSLDMSSQDETSITAN-DATIKDMEVRAEF 157 (157)
Q Consensus 92 ~~~~~~f~~~~~~~~p~~~----~~~l~~~~~~~~G~i~S~d~fi~~~~~~~~l~~~-~a~~vdME~aav~ 157 (157)
+.. + |+.++.|..+ +..+ +..++.|.++|+|+|+.++++++.|+++ +++++|||+||++
T Consensus 104 ~~~---~--~~~g~~p~~~~~~~~~~~--~~~~~~~~i~SgD~Fi~~~~~~~~l~~~~~a~~vDME~aAia 167 (218)
T PRK07164 104 ITP---W--YPPGQTPGEKEFYENNKI--NKNFNKIHLGSSNSFIFDLDKLKIIKDFIFVSFFDMEAFALA 167 (218)
T ss_pred CCc---C--CCcccCCCCcccccchhh--hcCCcEEEEEeCCccCCCHHHHHHHHhcCCCcEEEchHHHHH
Confidence 532 3 5666666433 2222 2346789999999999998888888777 9999999999974
No 7
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.94 E-value=3.7e-26 Score=178.68 Aligned_cols=143 Identities=27% Similarity=0.387 Sum_probs=113.0
Q ss_pred ccccccceeEEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecce
Q 031587 11 VGHTCTQQEYEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDV 86 (157)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~ 86 (157)
+.++...+++..+++.||.+.+....| +|||++|||+++++++.+|+|+.||++|+||+++ +++++||+||++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~g~~~g~~v~v~~tG~G~~~aa~~~~~li~~~~~~~ii~~G~aG~l~-~~~~~GDvvi~~~~ 95 (230)
T PRK05584 17 LDKLENAQTITLAGREFYTGTLHGHEVVLVLSGIGKVAAALTATILIEHFKVDAVINTGVAGGLA-PGLKVGDVVVADEL 95 (230)
T ss_pred HHHhhccceEecCCcEEEEEEECCEEEEEEECCcCHHHHHHHHHHHHHhcCCCEEEEEEecCCCC-CCCccCCEEEECeE
Confidence 344556667788888888754443333 4599999999999999999999999999999999 89999999999999
Q ss_pred EEecCCCCccCccccCCCCCCCC-----CChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEe
Q 031587 87 AFHDRRIPIPVFDLYGVGQRQAF-----STPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKD 150 (157)
Q Consensus 87 ~~~d~~~~~~~f~~~~~~~~p~~-----~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vd 150 (157)
+++|.+.+ .|+ |+.+..|.. ++++|. .+++++.|.++|+|+|+.++++++.|++ + ++.++|
T Consensus 96 ~~~d~~~~--~~~-~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~~~s~d~f~~~~~~~~~l~~~~~~~~~ve 172 (230)
T PRK05584 96 VQHDVDVT--AFG-YPYGQVPGLPAAFKADEKLVALAEKAAKELNLNVHRGLIASGDQFIAGAEKVAAIRAEFPDALAVE 172 (230)
T ss_pred EEeccCcc--ccC-CcCCccCCCCcceeCCHHHHHHHHHHHHhcCCcEEEEEEEEcchhcCCHHHHHHHHHhCCCCeEEe
Confidence 99997654 232 344444432 233442 1578999999999999999988888885 7 999999
Q ss_pred ccccccC
Q 031587 151 MEVRAEF 157 (157)
Q Consensus 151 ME~aav~ 157 (157)
||++|++
T Consensus 173 ME~aa~a 179 (230)
T PRK05584 173 MEGAAIA 179 (230)
T ss_pred chHHHHH
Confidence 9999874
No 8
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=99.94 E-value=3.9e-26 Score=179.66 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=99.3
Q ss_pred EEEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCc
Q 031587 20 YEIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPI 95 (157)
Q Consensus 20 ~~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~ 95 (157)
.+.+++.||++.+....| +|||++|||+++++|+.+|+|+.||++|+|||++ +++++||+||++.++ +|.+..
T Consensus 41 ~~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aai~~~eLi~~~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~-~d~~~~- 117 (233)
T PRK13374 41 TDVRNMFGFTGTYKGKKVSVMGHGMGIPSMVIYVHELIATFGVKNIIRVGSCGATQ-DDVKLMDVIIAQGAS-TDSKTN- 117 (233)
T ss_pred ecccceEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcCCcEEEEEeccccCC-CCCCCCCEEEEeeeE-ecCchh-
Confidence 346677777744433222 4499999999999999999999999999999999 999999999999886 665432
Q ss_pred cCccccCCCCCCCCCChhHh---------hcCCceEEeEeecceeeCCHHHHHHH-HhCCCcEEeccccccC
Q 031587 96 PVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQDETSI-TANDATIKDMEVRAEF 157 (157)
Q Consensus 96 ~~f~~~~~~~~p~~~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l-~~~~a~~vdME~aav~ 157 (157)
.+ .+.....|..++..|. .+++++.|+++|+|.|+.+.+++.++ +++++.++|||+||++
T Consensus 118 -~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~i~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl~ 187 (233)
T PRK13374 118 -RI-RFSGHDFAAIADYQLLEKAVETAREKGVPVKVGNVFSSDLFYDPDEDAIEAMERFGILGVDMEVAGLY 187 (233)
T ss_pred -hh-ccCCCCcCCCCCHHHHHHHHHHHHHcCCCeEEEEEEEcCcccCCChHHHHHHHHcCCeEEehhHHHHH
Confidence 11 1222223333443331 25789999999999999977655544 4679999999999975
No 9
>PRK11178 uridine phosphorylase; Provisional
Probab=99.93 E-value=6.9e-26 Score=180.07 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=100.8
Q ss_pred EEcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCcc
Q 031587 21 EIHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP 96 (157)
Q Consensus 21 ~~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~ 96 (157)
+.+++.+|++.+....| +|||++|||+++++|+. ++|+.||++|+|||++ +++++||+||+++++++|....
T Consensus 44 ~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aa~~~~eLi~-~g~~~iI~~GtaG~l~-~~l~~GDvVI~~~a~~~Dg~s~-- 119 (251)
T PRK11178 44 SHREFTSWRAELDGKPVIVCSTGIGGPSTSIAVEELAQ-LGVRTFLRIGTTGAIQ-PHINVGDVLVTTASVRLDGASL-- 119 (251)
T ss_pred eccCeEEEEEEEcCEEEEEEecCCCHHHHHHHHHHHHH-cCCCEEEEEeccccCC-CCCCCCCEEEecceecCCCCcc--
Confidence 36777787754443333 44999999999999885 7999999999999999 9999999999999999997432
Q ss_pred CccccCCCCCCCCCCh----hHh-----hcCCceEEeEeecceeeCCHHH---------------HHHHHhCCCcEEecc
Q 031587 97 VFDLYGVGQRQAFSTP----NLL-----RELNLKVCKLSTGDSLDMSSQD---------------ETSITANDATIKDME 152 (157)
Q Consensus 97 ~f~~~~~~~~p~~~~~----~l~-----~~~~~~~G~i~S~d~fi~~~~~---------------~~~l~~~~a~~vdME 152 (157)
.|.+++.|..++. +|. .+.+++.|+++|+|.|+.+..+ .+.+++++++++|||
T Consensus 120 ---~y~~~~~p~~~~~~~~~~L~~~~~~~~~~~~~G~i~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEME 196 (251)
T PRK11178 120 ---HFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEME 196 (251)
T ss_pred ---ccCCCCcCCCCCHHHHHHHHHHHHHcCCCEEEEEEeecCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEehh
Confidence 3666666655442 221 2678999999999999975432 234445699999999
Q ss_pred ccccC
Q 031587 153 VRAEF 157 (157)
Q Consensus 153 ~aav~ 157 (157)
+||++
T Consensus 197 sAAla 201 (251)
T PRK11178 197 SATLL 201 (251)
T ss_pred HHHHH
Confidence 99974
No 10
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.93 E-value=9.5e-26 Score=178.67 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=94.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
+.++.+| ||++||++++++|+. ++++.||++|+|||++ +++++||+||++.++++|.. . + .|.++..|..
T Consensus 55 v~v~~~G---iG~~~aai~~~eLi~-~g~~~iIr~GtaG~l~-~~~~~GDiVI~~~a~~~Dg~-~---~-~y~~~~~p~~ 124 (245)
T TIGR01718 55 VIVCSTG---IGGPSTAIAVEELAQ-LGARTFIRVGTTGAIQ-PHINVGDVLITTAAVRLDGA-S---L-HYAPLEFPAV 124 (245)
T ss_pred EEEEcCC---CCHHHHHHHHHHHHH-hCCCEEEEeeccccCC-CCCCCCCEEEeCceecCCCc-c---c-ccCCCCcCCC
Confidence 4455555 999999999999996 8999999999999999 99999999999999999963 2 3 3666777766
Q ss_pred CChhHh---------hcCCceEEeEeecceeeCCHHH-----------H---HHHHhCCCcEEeccccccC
Q 031587 110 STPNLL---------RELNLKVCKLSTGDSLDMSSQD-----------E---TSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~-----------~---~~l~~~~a~~vdME~aav~ 157 (157)
|+.++. .+.+++.|+++|+|.|+.+..+ + +.++++++.++|||+||++
T Consensus 125 ~d~~l~~~l~~~~~~~~~~~~~G~v~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vEME~aal~ 195 (245)
T TIGR01718 125 ADFEVTTALVEAAESIGVRHHVGVVASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYEMESATLF 195 (245)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEEECCcCcCCCCccccccccchhHHHHHHHHHHcCceEehhhHHHHH
Confidence 654331 2578999999999999976532 1 2344569999999999975
No 11
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=99.93 E-value=4.2e-25 Score=173.97 Aligned_cols=129 Identities=14% Similarity=0.208 Sum_probs=99.6
Q ss_pred EEcCeeEEE-------EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCC
Q 031587 21 EIHDLFFAN-------LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRI 93 (157)
Q Consensus 21 ~~~~~~f~~-------~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~ 93 (157)
..+++.+|+ +.++.+| ||++|||+++++|+.+|+|+.||++|+|||++ +++++||+||++.+++ |.+.
T Consensus 41 ~~r~~~~~~G~~~g~~v~v~~tG---iG~~~aai~~~eLi~~~~~~~iI~~GtaG~l~-~~l~iGDvVI~~~a~~-~~~~ 115 (235)
T PRK05819 41 EVRGMLGFTGTYKGKRVSVMGTG---MGIPSISIYANELITDYGVKKLIRVGSCGALQ-EDVKVRDVVIAMGAST-DSNV 115 (235)
T ss_pred eeccEEEEEEEECCEEEEEEecC---CChhHHHHHHHHHHHhcCCcEEEEEecccCCC-CCCCCCCEEEEceeEe-cCCc
Confidence 356677766 4455555 99999999999999889999999999999999 8999999999999975 4433
Q ss_pred CccCccccCCCCCCCCCChhHh---------hcCCceEEeEeecceeeCCHHH-HHHHHhCCCcEEeccccccC
Q 031587 94 PIPVFDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQD-ETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 94 ~~~~f~~~~~~~~p~~~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~-~~~l~~~~a~~vdME~aav~ 157 (157)
. .+ .|.+...|..|++.|. .+++++.|+++|+|.|+.+.+. .+.++++++.++|||+||++
T Consensus 116 ~--~~-~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~G~v~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva 186 (235)
T PRK05819 116 N--RI-RFKGHDFAPIADFDLLRKAYDAAKEKGITVHVGNVFSADLFYNPDPEMFDVLEKYGVLGVEMEAAALY 186 (235)
T ss_pred c--cc-ccCCCCcCccCCHHHHHHHHHHHHHCCCcEEEEEEEecCcccCCCHHHHHHHHHcCCeEEeccHHHHH
Confidence 3 12 2443344444554442 2568999999999999987665 44455689999999999975
No 12
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=175.31 Aligned_cols=126 Identities=29% Similarity=0.454 Sum_probs=106.2
Q ss_pred eeEEEEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC
Q 031587 25 LFFANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG 104 (157)
Q Consensus 25 ~~f~~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~ 104 (157)
...+++.+..+| ||+||||.+++.++.+|+|+.|||+|+|||++ +++++||+|+++++.+||.+.+ .|+ |+.+
T Consensus 40 ~~~~~vvl~~sg---IG~v~aA~~t~~~i~~~~p~~iI~~G~aGgl~-~~~~iGDvvvs~~~~~~D~d~~--~~~-~~~g 112 (234)
T COG0775 40 MAGKEVVLVLSG---IGKVNAALTTTLLLAKFSPDAVINTGSAGGLV-SSLAIGDVVVSDALSYHDVDLT--AFG-YEIG 112 (234)
T ss_pred EcCeEEEEEEeC---cCHHHHHHHHHHHHHhcCCCEEEEeeeccCcC-CCCccccEEEEhhHhhhhcccc--ccc-ccCC
Confidence 333446677777 99999999999999999999999999999999 9999999999999999999877 675 8888
Q ss_pred CCC-CCC-----ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEeccccccC
Q 031587 105 QRQ-AFS-----TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAEF 157 (157)
Q Consensus 105 ~~p-~~~-----~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vdME~aav~ 157 (157)
+.| ..| ++++. .+.+++.|+++|+|+|+...+...++++ + +|.++|||+||++
T Consensus 113 ~~p~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~Gli~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia 182 (234)
T COG0775 113 QIPTGEPALFEADEELLDLAGEVAGEGKLRLRTGLIVTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIA 182 (234)
T ss_pred CCCCccchhccccHHHHHHHHHHHHhcCcceeEEEEEcchhhhhcchhHHHHHHHCCCcEEEEecHHHHH
Confidence 888 333 23331 1568999999999999998887777775 6 9999999999973
No 13
>PRK08236 hypothetical protein; Provisional
Probab=99.93 E-value=6.5e-25 Score=170.56 Aligned_cols=121 Identities=22% Similarity=0.332 Sum_probs=98.5
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCcc-CccccCCCC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQAL--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDLYGVGQ 105 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~--~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~-~f~~~~~~~ 105 (157)
.+.+..+| |||+|||++++++|++| +|+.||++|+|||++ +++++||+|+++++++||.+...+ +| .+..
T Consensus 26 ~~~v~~sG---iGkv~AA~~~~~li~~~~~~p~~vI~~GvAGgl~-~~l~vGDvVva~~~~~~D~g~~~~~g~---~~~~ 98 (212)
T PRK08236 26 RFDVLAAG---VGPAAAAASTARALAAAAAPYDLVVSAGIAGGFP-GKAEVGSLVVADEIIAADLGAETPDGF---LPVD 98 (212)
T ss_pred ceEEEEcC---cCHHHHHHHHHHHHHHhccCCCEEEEEecccCCC-CCCCCCCEEEEeeEEeccCCCCCccCc---Cccc
Confidence 46677888 99999999999999999 999999999999999 899999999999999999875422 22 1111
Q ss_pred C-----CCCC-ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-C-CCcEEecccccc
Q 031587 106 R-----QAFS-TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-N-DATIKDMEVRAE 156 (157)
Q Consensus 106 ~-----p~~~-~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~-~a~~vdME~aav 156 (157)
. ..++ +++|. ..++++.|+++|+|+|+.+.++++.|++ + ++.++|||++|+
T Consensus 99 ~~~~~~~~~~~d~~l~~~~~~~l~~~~~~~~~G~i~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAv 166 (212)
T PRK08236 99 ELGFGTTTIQVDPALVRQLTEALLAAALGATAGPVLTVSTVTGTAETAAALAARHPDAVAEAMEGFGV 166 (212)
T ss_pred cccCCcceecCCHHHHHHHHHHHHhcCCCeEEeeEEecCeEeCCHHHHHHHHHHCCCceeehhHHHHH
Confidence 1 1122 33332 1467999999999999999999999985 7 899999999997
No 14
>PRK07115 AMP nucleosidase; Provisional
Probab=99.92 E-value=1e-24 Score=173.76 Aligned_cols=118 Identities=20% Similarity=0.188 Sum_probs=95.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
+.++.+| ||++|||+++++|+ .++++.||++|+||+|+ +++++||+||++.++++|. + .+ .|.++..|..
T Consensus 62 vsv~~~G---IG~psAai~~eeL~-~~g~~~iIr~GtaGaL~-~~l~~GDiVI~t~avr~dg--t--s~-~Y~p~~~pa~ 131 (258)
T PRK07115 62 ITIINFG---MGSPNAATIMDLLS-ALNPKAVLFLGKCGGLK-SKYQVGDYFLPIAAIRGEG--T--SD-DYFPPEVPAL 131 (258)
T ss_pred EEEEeCC---CCHHHHHHHHHHHH-HcCCCEEEEEecccCcC-CCCCCCCEEEEEEEEEcCC--c--cc-cccCCccCcC
Confidence 6677777 99999999999775 57999999999999999 9999999999999998885 3 23 3777777777
Q ss_pred CChhHh---------hcCCceEEeEeecceeeCC--HHHHHHHHhCCCcEEeccccccC
Q 031587 110 STPNLL---------RELNLKVCKLSTGDSLDMS--SQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~~l~---------~~~~~~~G~i~S~d~fi~~--~~~~~~l~~~~a~~vdME~aav~ 157 (157)
|+..|. .+++++.|+++|+|.|+.. .+.++.|++++++++|||+||+|
T Consensus 132 ~d~~l~~~l~~~~~~~~~~~~~G~v~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~ 190 (258)
T PRK07115 132 PNFVLQKAVSSIIRDKGLDYWTGTVYTTNRRFWEHDKEFKEYLYETRAQAIDMETATLF 190 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEEecCCCccCCcHHHHHHHHHcCCeEEehhHHHHH
Confidence 664332 3678999999999986643 33355566789999999999985
No 15
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=99.92 E-value=2.2e-24 Score=169.62 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=99.2
Q ss_pred EcCeeEEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccC
Q 031587 22 IHDLFFANLNLILSEV----DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPV 97 (157)
Q Consensus 22 ~~~~~f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~ 97 (157)
.+++.+|++.+....+ +|||++|||+++++|+..++|+.||++|+|||++ +++++||+||++.++++|. .. .
T Consensus 39 ~r~~~~~~G~~~g~~v~v~~~G~G~~~aai~~~eli~~~~~~~iI~~Gt~G~l~-~~~~~GdvvI~~~a~~~~~-~~--~ 114 (232)
T TIGR00107 39 VRGMLGFTGTYKGKKISVMGHGMGIPSISIYVYELIKFYEVKTIIRIGSCGAIR-PDVKLRDVIIAMGASTDSK-YN--R 114 (232)
T ss_pred ecceEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcCCCEEEEEeccccCC-CCCCCCCEEEECceeccCC-cc--h
Confidence 6667777754433322 4599999999999999889999999999999999 8999999999999987773 22 1
Q ss_pred ccccCCCCCCCCCChhHh---------hcCCceEEeEeecceeeCCHHH-HHHHHhCCCcEEeccccccC
Q 031587 98 FDLYGVGQRQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQD-ETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 98 f~~~~~~~~p~~~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~-~~~l~~~~a~~vdME~aav~ 157 (157)
. .|.+...|..|+.+|. .+++++.|+++|+|.|+.+..+ .+.+++++++++|||+||++
T Consensus 115 ~-~~~~~~~~~~ad~~l~~~l~~~~~~~~~~~~~G~~~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal~ 183 (232)
T TIGR00107 115 V-RFVEVDFAAIADFELVELAYQTAKALGLDFHVGNVFSADAFYQPDKDVFDLMAKYGILAVEMEAAALY 183 (232)
T ss_pred h-hcCCCCcCccCCHHHHHHHHHHHHHCCCCeEEEEEeEcCcccCCCHHHHHHHHHcCCeEEehhHHHHH
Confidence 1 1222223333444332 2578999999999999987654 44556689999999999975
No 16
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=99.91 E-value=2.8e-24 Score=167.96 Aligned_cols=125 Identities=23% Similarity=0.313 Sum_probs=98.2
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCcc-Cccc---cCCC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIP-VFDL---YGVG 104 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~-~f~~---~~~~ 104 (157)
.+.+..+| ||++|||+++++++.+|+|+.||++|+||+++ +++++||+|++++++++|.+...+ .|.. ...+
T Consensus 30 ~v~v~~tG---iG~v~aA~~~~~~i~~~~~~~ii~~G~aG~l~-~~~~~GDvvv~~~~~~~d~g~~~~~~~~p~~~~~~~ 105 (222)
T TIGR03664 30 GFDVLVTG---VGPVNAAAATARLLARAPYELVINAGIAGGFP-GSAAVGDLVVADSEIAADLGAETPEGFLPLEALGFP 105 (222)
T ss_pred eEEEEECC---cCHHHHHHHHHHHHHhCCCCEEEEEEEcccCC-CCCCCcCEEEeeeEEEcccCccCCCCccccccCCCC
Confidence 46777788 99999999999999999999999999999999 899999999999999999764221 2210 0111
Q ss_pred CCC--------CCC-ChhHh---------hcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEeccccccC
Q 031587 105 QRQ--------AFS-TPNLL---------RELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 157 (157)
Q Consensus 105 ~~p--------~~~-~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~aav~ 157 (157)
..| .++ +++|. .+++++.|+++|+|.|+.+.+.++.+.+ +++.++|||+||++
T Consensus 106 ~~~~~~~~~~~~~~~d~~L~~~~~~~~~~~~~~~~~G~i~T~d~~~~~~~~~~~l~~~~~a~aveMEsaava 177 (222)
T TIGR03664 106 QLPGGGSSYFNRIPLDPDLVERAVQLLRALGLPVARGPFLTVSTVSGTAARAEALARRFGAVAENMEGFAVA 177 (222)
T ss_pred cCCCCCccccccccCCHHHHHHHHHHhhccCcceeEeeeeeecceeCCHHHHHHHHHhcchHHHHhhHHHHH
Confidence 100 133 33332 2468999999999999999888777775 69999999999974
No 17
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.91 E-value=1.3e-23 Score=167.80 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=99.2
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA 108 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~ 108 (157)
.+.++.+| ||++|||+++++|+..++++.||++|+||||+ +++++||+||++.++++|.. . + .|.++..|.
T Consensus 61 ~itv~~~G---vG~psAai~~eeL~~~~G~k~iIriGtcG~L~-~~i~iGDiVI~~aAir~dgt-s---~-~Y~p~~~p~ 131 (266)
T TIGR01721 61 GTSIIDFK---LGSPGAALIXDLCSFLPHPKAAIMLGMCGGLR-SHYQVGDYFVPVASIRGEGT-S---D-AYFPPEVPA 131 (266)
T ss_pred CEEEEECC---CCHHHHHHHHHHHHHhcCCCEEEEEEeccCCC-CCCCCCCEEEEcceEeccCc-h---h-hcCCcccCC
Confidence 37788899 99999999999887788999999999999999 89999999999999988863 2 3 376777777
Q ss_pred CCChhHh---------hcCCceEEeEeecce-eeCCH-HHHHHHHhCCCcEEeccccccC
Q 031587 109 FSTPNLL---------RELNLKVCKLSTGDS-LDMSS-QDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 109 ~~~~~l~---------~~~~~~~G~i~S~d~-fi~~~-~~~~~l~~~~a~~vdME~aav~ 157 (157)
.|+.+|. .+.+++.|+++|+|. |+... +.++.|++.++++||||+||+|
T Consensus 132 ~~d~~l~~~l~~a~~~~g~~~~~G~v~TtD~~F~e~~~~~~~~~~~~ga~aVEMEsAAL~ 191 (266)
T TIGR01721 132 LANFVVQKAITSALENKGKDYHIGITHTTNIRFWEFNKKFRDKLYETKAQGVEMECATLF 191 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEEEcCCCcEeCCcHHHHHHHHHcCCEEEehhHHHHH
Confidence 6664432 267899999999997 55533 3456677789999999999985
No 18
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=99.90 E-value=2.3e-23 Score=161.39 Aligned_cols=115 Identities=26% Similarity=0.394 Sum_probs=91.1
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHcC-----CCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQALK-----PDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV 103 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~~-----~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~ 103 (157)
.+.+..+| |||||||++++.||++|+ |+.|||+|+|||. ++++||+|++++++|||.+.+ .| +|++
T Consensus 30 ~v~l~~sG---IGKVnAA~~t~~lI~~f~~~~~~pd~IIn~GvAGg~---~l~igDvViat~~~~hD~d~~--~~-g~~~ 100 (212)
T PRK06026 30 RFTPLMTG---VGPVEAAVNLTAALARLKAAGDLPDLVVSLGSAGSA---KLEQTEVYQVSSVSYRDMDAS--PL-GFEK 100 (212)
T ss_pred CeEEEEcC---eeHHHHHHHHHHHHHHhhccCCCCCEEEEecccCCC---CCccCCEEEEeeEEEcCCCCc--cc-CCcc
Confidence 46778888 999999999999999999 9999999999993 599999999999999999876 57 4888
Q ss_pred CCCCCCCChh---Hhhc-CCceEEeEeecceeeCCHHHHHHHHhCCCcEEecccccc
Q 031587 104 GQRQAFSTPN---LLRE-LNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAE 156 (157)
Q Consensus 104 ~~~p~~~~~~---l~~~-~~~~~G~i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav 156 (157)
++.|..+.+. +... .....+.+.|+|.|+.... .+++++.++|||+||+
T Consensus 101 g~~p~~~~~~~~~l~~~~~~~~~~~i~tgg~~vsgd~----f~~~~a~~vdMEgaAv 153 (212)
T PRK06026 101 GVTPFLDLPATVELPLRIPGIPEASLSTGGNIVSGAA----YDAIDADMVDMETYAV 153 (212)
T ss_pred cccCCCCCchhHHHHHHHhhhhcccceecCEEeeCch----hhhcCCeEEechHHHH
Confidence 8888544322 2222 1344566677888876542 2457999999999997
No 19
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=99.89 E-value=6e-23 Score=158.89 Aligned_cols=108 Identities=21% Similarity=0.314 Sum_probs=87.6
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHc-----CCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQAL-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG 104 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~-----~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~ 104 (157)
+.+..+| |||||||++++.||++| +|+.|||+|+|||++ +++||+|++++++|||.+.+ .| +|+.|
T Consensus 31 ~~l~~sG---IGKVNAA~~~~~lI~~f~~~~~~pd~VIN~GvAG~~~---~~igDIVi~t~~~~hDvd~t--~~-gy~~G 101 (212)
T TIGR01705 31 FAPLMTG---VGPVEAAIRVGAELAGLDAADALPDLVVSLGSAGSRT---LEQTEIYQAVSVSYRDIDAS--AF-GFEKG 101 (212)
T ss_pred eeEEEcC---ccHHHHHHHHHHHHHhhhhccCCCCEEEEecccCCCC---CccCCEEEEeeEEEcCcCcc--cc-CCccc
Confidence 4567788 99999999999999986 899999999999954 77999999999999999877 67 48889
Q ss_pred CCCCCC---ChhHh-------hcCCceEEeEeecceeeCCHHHHHHHHhCCCcEEecccccc
Q 031587 105 QRQAFS---TPNLL-------RELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAE 156 (157)
Q Consensus 105 ~~p~~~---~~~l~-------~~~~~~~G~i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav 156 (157)
+.|..| +..|. ....++.|.++|+|.| .++++.++|||++|+
T Consensus 102 qiP~~~~~~~~~l~~~~~~~~~~~~~~~g~~vSgd~f----------~~~~a~~vdME~aAi 153 (212)
T TIGR01705 102 ATPFLDLPAEAALPFRIPDIAEARLSTGGAIISGAAY----------DAIAADMVDMETFAC 153 (212)
T ss_pred cCCCCCCCchhhHHHHHHHHHhccCcceeEEEECcch----------hhCCceEEechHHHH
Confidence 888653 22221 1223678888888886 235899999999986
No 20
>PRK08292 AMP nucleosidase; Provisional
Probab=99.87 E-value=1.1e-21 Score=166.36 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=89.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
++++.+| |||+||++++++| ..++|+.||++|+||||+ +++++||+||++.++++|.... .|.+++.|..
T Consensus 278 VtvvssG---IGpsnAA~ateeL-a~lgpd~iIriGtAGgL~-~~lkiGDvVIA~aavr~DGt~d-----~~~p~evPa~ 347 (489)
T PRK08292 278 ITLVNIG---VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-NSQRIGDYVLAHAYLRDDHVLD-----AVLPPWIPIP 347 (489)
T ss_pred EEEEEcC---CCHHHHHHHHHHH-HHcCCCEEEEEEehhcCC-CCCCCCCEEEECceEeCCcccc-----cccccccCcC
Confidence 6777788 9999999888875 578999999999999999 9999999999999999985322 1333444433
Q ss_pred CCh----hHh---------h----cCCceEEeEeecceeeCCH---HHHHHHHhCCCcEEeccccccC
Q 031587 110 STP----NLL---------R----ELNLKVCKLSTGDSLDMSS---QDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~----~l~---------~----~~~~~~G~i~S~d~fi~~~---~~~~~l~~~~a~~vdME~aav~ 157 (157)
+.. .|. . +.+++.|+++|+|.|++.. +.++.|++.+++++|||+|||+
T Consensus 348 a~~el~~aL~~aa~ev~~~~g~elg~~~h~G~V~SgD~F~~e~~~~~l~~~~~~~gAlAVEMESAALa 415 (489)
T PRK08292 348 AIAEVQVALEDAVAEVTGLPGEELKRRMRTGTVVTTDDRNWELRYSASALRFNQSRAVALDMESATIA 415 (489)
T ss_pred CcHHHHHHHHHHHHHHhhhcccccCCceEEEEEEecCcCCCcCchHHHHHHhhhcCCEEEehhHHHHH
Confidence 221 111 0 4679999999999997653 2234444459999999999985
No 21
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=99.86 E-value=2.3e-21 Score=150.97 Aligned_cols=124 Identities=26% Similarity=0.390 Sum_probs=92.5
Q ss_pred EEEeecCCCCCCHHHHH-HHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCcc---ccCCCC
Q 031587 30 LNLILSEVDSVGTISAS-LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGVGQ 105 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa-~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~---~~~~~~ 105 (157)
+.+..+| ||++||+ .+++.++.+|+|+.||++|+|||++ +++++||+|+++.++++|.......+. .+....
T Consensus 44 v~i~~~g---~G~~~aa~~~~~~~l~~~~~~~vi~~G~~G~~~-~~~~~GDvvi~~~~~~~d~~~~~~~~~~~~~~~~~~ 119 (234)
T PF01048_consen 44 VVIVSTG---MGPVNAAVIATQRLLEEFGPDLVIMIGICGGLD-PDIKLGDVVIPQDAIRYDGDSPSFFFDEEPPYAPVS 119 (234)
T ss_dssp EEEEEES---SSHHHHHHHHHHHHHHHCTSSEEEEEEEEEESS-TTS-TTEEEEEEEEEEESSHHGHHSSETTSGTSTSC
T ss_pred EEEEECC---cCCchHHHHHHHHHHHhCCCeEEEEeccccccc-cccccceEEecccEEeccCccccccccccccccccc
Confidence 5566677 9999999 9999999999999999999999999 899999999999999988753210110 011111
Q ss_pred CCCCCChhHh---------hcCCceEEeEeecceeeCCHHHHHH-HHhCCCcEEeccccccC
Q 031587 106 RQAFSTPNLL---------RELNLKVCKLSTGDSLDMSSQDETS-ITANDATIKDMEVRAEF 157 (157)
Q Consensus 106 ~p~~~~~~l~---------~~~~~~~G~i~S~d~fi~~~~~~~~-l~~~~a~~vdME~aav~ 157 (157)
.+..++++|. .+++++.|+++|+|.|+.+...... ++++++.++|||+++++
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~~G~~~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~ 181 (234)
T PF01048_consen 120 RPAPADPDLREALKEAAKALGIPVHEGPIASGDSFYRETEAEIELLQKFGADAVDMESAAVA 181 (234)
T ss_dssp STEESHHHHHHHHHHHHHHTTSTEEEEEEEEESSSSGSHHHHHHHHHHTTEEEEESSHHHHH
T ss_pred cccccCHHHHHHHHHhhhccccccccceEEEEeeeccchhhHHHHHHhcccccccchHHHHH
Confidence 1101223332 2578999999999999998855444 44679999999999873
No 22
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.85 E-value=3e-21 Score=156.12 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=88.5
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHH---c--CCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQA---L--KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG 104 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~---~--~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~ 104 (157)
++++.+| ||++||++++++|+.. | +++.||++|+|||+ ++++||+||++.++++|.+.. +..+..+
T Consensus 80 V~v~stG---IG~psaaI~~~ELi~~~~~~~~~~~~IIRiGtaG~l---~i~iGDvVIat~a~~~d~~~~---~~~~~~~ 150 (287)
T TIGR01719 80 VLCVSHG---MGIPSISIMLHELIKLLYYARCKNPTFIRIGTSGGI---GVPPGTVVVSSEAVDACLKPE---YEQIVLG 150 (287)
T ss_pred EEEEecC---CCcchHHHHHHHHHHhhhhcCCCCceEEEEeccccC---CCCCCCEEEEchhhhcccCch---HhhcccC
Confidence 7777788 9999999999999975 4 55699999999999 499999999999998886422 2112221
Q ss_pred ---CCCCCCChhHh-----------hcCCceEEeEeecceeeCC-------------HHHHHHHH---hCCCcEEecccc
Q 031587 105 ---QRQAFSTPNLL-----------RELNLKVCKLSTGDSLDMS-------------SQDETSIT---ANDATIKDMEVR 154 (157)
Q Consensus 105 ---~~p~~~~~~l~-----------~~~~~~~G~i~S~d~fi~~-------------~~~~~~l~---~~~a~~vdME~a 154 (157)
..|..++++|. .+.+++.|+++|+|.|+.+ .++.+.++ ++++.++|||+|
T Consensus 151 ~~~~~~~~aD~~L~~~l~~aa~~~~~~~~~~~G~i~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i~~~~~~gv~~vEMEsa 230 (287)
T TIGR01719 151 KRVIRPTQLDEALVQELLLCGAEGLDEFTTVSGNTMCTDDFYEGQGRLDGAFCEYTEKDKMAYLRKLYALGVRNIEMESS 230 (287)
T ss_pred CCcccCCCCCHHHHHHHHHHHHhhcCCCCeEEEEEccCCcccCCCCcccccccccchhhhHHHHHHHHHcCCeEEehhHH
Confidence 11333444431 2478999999999999986 22233444 349999999999
Q ss_pred ccC
Q 031587 155 AEF 157 (157)
Q Consensus 155 av~ 157 (157)
|++
T Consensus 231 al~ 233 (287)
T TIGR01719 231 MFA 233 (287)
T ss_pred HHH
Confidence 985
No 23
>PRK05634 nucleosidase; Provisional
Probab=99.85 E-value=3.5e-21 Score=146.80 Aligned_cols=111 Identities=26% Similarity=0.355 Sum_probs=85.4
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHH--HcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCcc---ccCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQ--ALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD---LYGVG 104 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~--~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~---~~~~~ 104 (157)
+.+..+| |||+|||++++++|. +|+|+.|||+|+|||++ ++++ |+|++++++++|.+.+ .++ +|..+
T Consensus 23 ~~~~~sG---IGkvnaA~~~~~~L~~~~~~p~~iIn~G~AG~l~-~~l~--~vv~~~~v~~~D~~~~--~~~~~~~~~~~ 94 (185)
T PRK05634 23 LPLLITG---IGKVAAAVALTRALARRGVLPPRVVNIGTAGALR-DGLS--GVFEPSHVINHDFSSD--LIRALTGHPVA 94 (185)
T ss_pred CEEEEcC---CCHHHHHHHHHHHHHhcCCCCCEEEEeecccCCC-cCCC--eEEEEeeEEEcccCcc--ccccccCcccc
Confidence 4567778 999999999888765 59999999999999999 7776 8999999999998654 221 11111
Q ss_pred CCCCCCChhHhhcCCceEEeEeecceeeCCHHHHHHHHhCCCcEEeccccccC
Q 031587 105 QRQAFSTPNLLRELNLKVCKLSTGDSLDMSSQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 105 ~~p~~~~~~l~~~~~~~~G~i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav~ 157 (157)
+.+.++ ....|.+.|+|.|+.+++.++.|++ ++.++|||++|++
T Consensus 95 ~~~~~~--------~~~~g~i~sgD~fvs~~~~~~~l~~-~a~~vDME~aAva 138 (185)
T PRK05634 95 NRLELP--------TGDGAVLATGDAFISDTATRDRLAQ-RADLVDMEGYAVA 138 (185)
T ss_pred cccccc--------cCCCceEecCCceecCHHHHHHHhc-cCeEEecHHHHHH
Confidence 111111 1345899999999999888887865 7899999999973
No 24
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.85 E-value=7.4e-21 Score=161.00 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=88.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
++++.+| |||+||++++++| ..++|+.+|++|+||||+ +++++||+||++.++++|.... .|-+.+.|..
T Consensus 266 ItvvstG---IGpsnAaaiteeL-a~lgp~~iI~iGscGgL~-~~ikiGDlVIataAvR~DGtsd-----~ylp~~~Pap 335 (477)
T TIGR01717 266 ITLVNIG---VGPSNAKTITDHL-AVLRPHAWLMIGHCGGLR-ESQRIGDYVLAHAYLREDHVLD-----AVLPPDIPIP 335 (477)
T ss_pred EEEEECC---CCHHHHHHHHHHH-HHcCCCEEEEEEccccCC-CCCCCCCEEEEeeEEecCcchh-----hhcccccCCC
Confidence 6777777 9999999888775 579999999999999999 9999999999999999985322 1222233322
Q ss_pred CChh----Hh---h----------cCCceEEeEeecceeeC---CHHHHHHHHhCCCcEEeccccccC
Q 031587 110 STPN----LL---R----------ELNLKVCKLSTGDSLDM---SSQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~~----l~---~----------~~~~~~G~i~S~d~fi~---~~~~~~~l~~~~a~~vdME~aav~ 157 (157)
++.. |. + +.+++.|+++|+|.|++ +.+.++.++..+++++|||+||++
T Consensus 336 a~~~l~~aL~~Aa~~~~g~~g~el~~~~h~G~V~StD~F~~el~~~~~~~~l~~~gAlAVEMESAALa 403 (477)
T TIGR01717 336 AIAEVQRALEDAVAEVTGRPGEELKRRLRTGTVLTTDDRNWELRYSASALRLNLSRAIAVDMESATIA 403 (477)
T ss_pred CcHHHHHHHHHHHHHhhcccccccCCceEEEEEEecCcCcccCCCHHHHHHHHhCCCEEEehhHHHHH
Confidence 2211 11 1 24699999999999864 345455565569999999999975
No 25
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.85 E-value=5.5e-21 Score=146.87 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=96.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
+.+..+| ||.++.++.+.+|+..|+++.||++|+||+++ ++++++|+||+..++ -|+... ++ .+.....+..
T Consensus 58 iSvmg~G---mGipS~sIY~~ELi~~y~Vk~iIRvGt~Gal~-~~v~l~DvVia~~A~-tds~~~--~~-~f~~~df~~~ 129 (236)
T COG0813 58 ISVMGHG---MGIPSISIYSRELITDYGVKKIIRVGTCGALS-EDVKLRDVVIAQGAS-TDSNVN--RI-RFKPHDFAPI 129 (236)
T ss_pred EEEEEec---CCCccHHHHHHHHHHHhCcceEEEEEcccccc-CCcccceEEEecccc-Ccchhh--hc-ccCccccccc
Confidence 6677777 99999999999999999999999999999999 999999999999886 555433 22 1223333334
Q ss_pred CChhHh---------hcCCceEEeEeecceeeCC-HHHHHHHHhCCCcEEeccccccC
Q 031587 110 STPNLL---------RELNLKVCKLSTGDSLDMS-SQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~~l~---------~~~~~~~G~i~S~d~fi~~-~~~~~~l~~~~a~~vdME~aav~ 157 (157)
++.+|+ .++++|.|.+.|+|.|+.+ ++..+.|+++|+++||||++|+|
T Consensus 130 ad~~Ll~~a~~~A~e~gi~~hvgnv~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY 187 (236)
T COG0813 130 ADFELLEKAYETAKELGIDTHVGNVFSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALY 187 (236)
T ss_pred CCHHHHHHHHHHHHHhCCceeeeeeeeeecccCCCHHHHHHHHHhCCcEEEeeHHHHH
Confidence 565553 3789999999999999976 45566677899999999999975
No 26
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.84 E-value=6.7e-21 Score=148.15 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=97.5
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF 109 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~ 109 (157)
+.++.|| ||.++||++.++|. +.+.+.+|++|++||++ +++++||+||++..+..|. .+ . .|.+.++|..
T Consensus 60 v~v~StG---IGgPSaaIAvEEL~-~lGa~tfiRVGT~Galq-~~i~~Gdvvi~tgAvr~dG-~s---~-~y~~~~~PAv 129 (248)
T COG2820 60 VTVCSTG---IGGPSAAIAVEELA-RLGAKTFIRVGTTGALQ-PDINVGDVVVATGAVRLDG-AS---K-HYAPEEFPAV 129 (248)
T ss_pred EEEEecC---CCCchHHHHHHHHH-hcCCeEEEEeecccccc-CCCCCCCEEEecccccccc-cc---c-cccCCCCCCC
Confidence 5666666 99999999999996 67999999999999999 9999999999999998887 22 2 4666677776
Q ss_pred CChhHh---------hcCCceEEeEeecceee-----------CCH-HHHHHHHhCCCcEEeccccccC
Q 031587 110 STPNLL---------RELNLKVCKLSTGDSLD-----------MSS-QDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 110 ~~~~l~---------~~~~~~~G~i~S~d~fi-----------~~~-~~~~~l~~~~a~~vdME~aav~ 157 (157)
|+..+. .+.+++.|++.|+|+|+ .+. +..++|++.|..++|||+|++|
T Consensus 130 ~d~~~t~al~~aa~~~~~~~~vG~v~S~D~FYgQ~r~~~~~~~~e~~~~~~~W~~~gv~~~EMEsAtlf 198 (248)
T COG2820 130 ADFELTNALVEAAESLGVTVHVGVVASSDAFYGQERYYSGFVTPEFKESWEEWQDLGVLNIEMESATLF 198 (248)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEEeecccccccccccccccCcchHHHHHHHHHcCchhhHHHHHHHH
Confidence 664331 25789999999999999 433 4466777789999999999986
No 27
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.84 E-value=7.4e-21 Score=147.75 Aligned_cols=114 Identities=21% Similarity=0.222 Sum_probs=90.3
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQA 108 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~ 108 (157)
.+.+..+| ||++||+++++.|+ +++|+.||++|+|||++ +++++||+||++++.+++ . .|. +. +.
T Consensus 21 ~v~~~~sG---iG~~~aa~~~~~l~-~~~~~~vI~~G~aG~l~-~~l~~Gdvvi~~~~~~~g---~--~~~-~d----~~ 85 (212)
T TIGR03468 21 GLLVCLSG---GGPERARAAAARLM-AAGAAGLVSFGTAGALD-PALQPGDLVVPEEVRADG---D--RFP-TD----PA 85 (212)
T ss_pred CEEEEEcC---CCHHHHHHHHHHHH-HcCCCEEEEEEecccCC-CCCCCCCEEeehhheeCC---C--eec-CC----HH
Confidence 46788888 99999999999985 89999999999999999 899999999999987542 1 231 11 11
Q ss_pred CC---ChhHhhcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEeccccccC
Q 031587 109 FS---TPNLLRELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEVRAEF 157 (157)
Q Consensus 109 ~~---~~~l~~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~aav~ 157 (157)
+. ...+..+++++.|+++|+|.|+.++++++.+++ +++.+||||+++++
T Consensus 86 l~~~l~~~l~~~~~~~~G~~~t~d~~~~~~~~~~~l~~~~ga~aVdMEsaava 138 (212)
T TIGR03468 86 WRRRLLEALPAGLRVHRGVLAASDTVVSTAAAKAALARATGAAAVDMESGAVA 138 (212)
T ss_pred HHHHHHHHHHhCCCeEEEEEEEeCeEecCHHHHHHHHHhcCCcEEeChHHHHH
Confidence 10 011123568999999999999999888888864 79999999999863
No 28
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.80 E-value=9.6e-19 Score=138.86 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=89.7
Q ss_pred EEEeecCCCCC----CHHHHHHHH-HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCcc-ccCC
Q 031587 30 LNLILSEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFD-LYGV 103 (157)
Q Consensus 30 ~~l~~~gv~gi----G~vnAa~~~-~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~-~~~~ 103 (157)
+.++.++ + ||+|+++++ .++|.+|+++.||++|+|||++ +++++||+||+++++++|.+.....+. .+..
T Consensus 53 Vv~~~~g---ih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~-~~l~~GDiVI~~~~i~~~~~~~~~~~~~~~~~ 128 (248)
T TIGR01697 53 VVCMQGR---FHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLN-PDFKPGDLMIIKDHINLPGLNPLVGPNDDRFG 128 (248)
T ss_pred EEEEcCC---CcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhhhhcCCCCCccCCCcccCC
Confidence 5555555 7 999998887 5599999999999999999999 999999999999999998642100000 0000
Q ss_pred CCCCCC---CChhHh---------hcCCceEEe--EeecceeeCCHHHHHHHHhCCCcEEeccccccC
Q 031587 104 GQRQAF---STPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 104 ~~~p~~---~~~~l~---------~~~~~~~G~--i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav~ 157 (157)
...|.+ .+++|. .+++++.|+ +.|+|.|.. .++.+.++++|+++||||+++++
T Consensus 129 ~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~~~~~~G~~f~t-~~e~~~~~~~g~~~VeME~aa~a 195 (248)
T TIGR01697 129 TRFPDLSNAYDRELRKLAQDVAKELGFPLTEGVYVMVSGPSYET-PAEIRMLRILGADAVGMSTVPEV 195 (248)
T ss_pred ceeCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEEECCCcCC-HHHHHHHHHcCCeEEccChHHHH
Confidence 122221 244442 256789999 678899994 45556677789999999999863
No 29
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.78 E-value=3.2e-18 Score=135.98 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=89.3
Q ss_pred EEEeecCCCCC----CHHHHHHHH-HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCc-----cCcc
Q 031587 30 LNLILSEVDSV----GTISASLVT-YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPI-----PVFD 99 (157)
Q Consensus 30 ~~l~~~gv~gi----G~vnAa~~~-~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~-----~~f~ 99 (157)
+.+...+ + |+++++++. ++|+.+|+++.||++|+|||++ +++++||+||+++.+++|..... ..|+
T Consensus 53 Vv~~~~~---iH~~~Gk~~a~i~~~~~ll~~~gv~~II~~gsaGsl~-~~l~~GDiVi~~d~i~~~~~~~l~g~~~~~~~ 128 (249)
T TIGR01700 53 VVAMQGR---FHMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGIN-PEFKVGDLMLIRDHINLPGFNPLRGPNEERFG 128 (249)
T ss_pred EEEEcCC---ccccCCcCHHHccHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEhhHhhCCCCCCccCCCCcCCC
Confidence 5555555 7 999999994 9999999999999999999999 99999999999999999852110 0121
Q ss_pred ccCCCCCCCCCChhHh---------hcCCceEEe--EeecceeeCCHHHHHHHHhCCCcEEecccccc
Q 031587 100 LYGVGQRQAFSTPNLL---------RELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEVRAE 156 (157)
Q Consensus 100 ~~~~~~~p~~~~~~l~---------~~~~~~~G~--i~S~d~fi~~~~~~~~l~~~~a~~vdME~aav 156 (157)
......+...+++|. .+++++.|+ +.|+|+|. ++++.+.++++|+++||||++++
T Consensus 129 -~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~G~y~~~sGp~F~-t~aE~~~~~~~gad~V~Me~aae 194 (249)
T TIGR01700 129 -VRFPDMSDAYDRDLRQKAHSIAKQLNIPLQEGVYVMLGGPSYE-TPAEVRLLRTLGADAVGMSTVPE 194 (249)
T ss_pred -CeeCCCCcccCHHHHHHHHHHHHHcCCccceEEEEEeeCCCcC-CHHHHHHHHHcCCCEEecchHHH
Confidence 101111111244442 256789999 89999999 45555556668999999999985
No 30
>PRK07077 hypothetical protein; Provisional
Probab=99.77 E-value=4.2e-18 Score=134.32 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCCCC---hhHh-
Q 031587 40 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAFST---PNLL- 115 (157)
Q Consensus 40 iG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~~~---~~l~- 115 (157)
.|+..++...+ ++...+|+.||++|+||||+ +++++||+||++++.+++. . | .. .+.+.. ..+.
T Consensus 37 ~~~~~~~a~~~-~~~~~~~~~vIs~G~AGgL~-p~l~vGDvVva~~v~~~~g--~---~---~~--d~~l~~~l~~~l~~ 104 (238)
T PRK07077 37 RADRLERALLA-AFDARGCAGIVSFGVAGGLD-PDLAPGDLVVATAVDAPFG--R---V---DT--DARWSARLAAALEL 104 (238)
T ss_pred CCHHHHHHHHH-HHHhcCCCEEEEEEeccccC-CCCCCCcEEEEeeeecCCC--c---C---cC--CHHHHHHHHHHHHh
Confidence 88888776666 66678999999999999999 9999999999999875542 1 2 10 011100 1111
Q ss_pred --hcCCceEEeEeecceeeCCHHHHHHHHh-CCCcEEecccccc
Q 031587 116 --RELNLKVCKLSTGDSLDMSSQDETSITA-NDATIKDMEVRAE 156 (157)
Q Consensus 116 --~~~~~~~G~i~S~d~fi~~~~~~~~l~~-~~a~~vdME~aav 156 (157)
...+++.|+++|+|+|+.+.++++.|++ +++.+||||++|+
T Consensus 105 ~~~~~~v~~G~i~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAv 148 (238)
T PRK07077 105 TPVARRVVRGGLAGVEAPVVGAAAKAALHRATGALAVDMESHIA 148 (238)
T ss_pred ccCCCceEEEEEEecCeeecCHHHHHHHHHhCCCEEEehhHHHH
Confidence 1347999999999999999998999986 6999999999986
No 31
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.76 E-value=3.2e-18 Score=135.31 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=86.5
Q ss_pred eecCCCCCCH------HHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCC-CC
Q 031587 33 ILSEVDSVGT------ISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV-GQ 105 (157)
Q Consensus 33 ~~~gv~giG~------vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~-~~ 105 (157)
..+| +|+ +|+++.++.| .+++++.||++|+|||++ +++++||+||+++.++++.+.....|+ +.. ..
T Consensus 49 ~~~G---~g~~~~~~~vn~~a~~~~L-~~~Gv~~iI~~GsaG~l~-~~l~~GDlVI~~~~i~~~~~~~~~~~~-~~~~~~ 122 (241)
T TIGR01694 49 PRHG---RGHDIPPHEVNYRANIWAL-KSLGVKYVISVNAVGSLR-EEYPPGDLVVPDQFIDRTSGRPSTFFD-GGKVVH 122 (241)
T ss_pred eCCC---CCCccChHHCCcHHHHHHH-HHcCCCEEEEeccccccC-CCCCCCCEEEEhhHhhccCCCCCccCC-CCccCC
Confidence 4456 999 9988888887 789999999999999999 999999999999999887642211121 110 11
Q ss_pred --CCCCCChhHh---------hcCCce-EEeEe--ecceeeCCHHHHHHHHhCCCcEEeccccccC
Q 031587 106 --RQAFSTPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITANDATIKDMEVRAEF 157 (157)
Q Consensus 106 --~p~~~~~~l~---------~~~~~~-~G~i~--S~d~fi~~~~~~~~l~~~~a~~vdME~aav~ 157 (157)
.+..++++|. .+++++ .|.++ +++.|.. +++.+.++++|+++||||+++++
T Consensus 123 ~~~~~~~d~~L~~~l~~~a~~~~~~~~~~G~~~~~~G~~f~t-~~e~~~~~~~Ga~aVeME~aa~~ 187 (241)
T TIGR01694 123 VDFGDPYCEDLRQRLIESLRRLGLTVHDGGTYVCTEGPRFST-RAESRMFKSWGADIVGMTGVPEA 187 (241)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEeceEEEeCcCCCcCC-HHHHHHHHHcCCeEEeccHHHHH
Confidence 1112344442 256788 79998 6668864 55567777789999999999864
No 32
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.73 E-value=3.4e-17 Score=130.85 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=96.0
Q ss_pred ccceeEEEcCeeEEEEEEeecCC-----CCCC------HHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEe
Q 031587 15 CTQQEYEIHDLFFANLNLILSEV-----DSVG------TISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLI 83 (157)
Q Consensus 15 ~~~~~~~~~~~~f~~~~l~~~gv-----~giG------~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~ 83 (157)
....++.++..+|+.+.+....| +|+| ++|++++++. +.+++++.||++|+|||++ +++++||+||+
T Consensus 23 ~~~~~~~~g~~~~~~G~~~g~~Vv~l~~~G~gh~~~~~kVn~~a~~~~-l~~~Gv~~II~tgsaGsl~-~~l~~GDiVi~ 100 (261)
T PRK08666 23 EETVETPYGEVKVKIGTYAGEEVAFLARHGEGHSVPPHKINYRANIWA-LKELGVERILATSAVGSLN-PNMKPGDFVIL 100 (261)
T ss_pred cceeEeeCCCCEEEEEEECCEEEEEEeCCCCCCccChhhcchHHHHHH-HHHCCCCEEEEeccccccC-CCCCCCCEEee
Confidence 44556667777887754433333 3499 9997777766 7899999999999999999 99999999999
Q ss_pred cceEEecCCCCccCccccCCCCCCC------CC-ChhHh---------hcCCceEEeE---eecceeeCCHHHHHHHHhC
Q 031587 84 SDVAFHDRRIPIPVFDLYGVGQRQA------FS-TPNLL---------RELNLKVCKL---STGDSLDMSSQDETSITAN 144 (157)
Q Consensus 84 ~~~~~~d~~~~~~~f~~~~~~~~p~------~~-~~~l~---------~~~~~~~G~i---~S~d~fi~~~~~~~~l~~~ 144 (157)
++.+++|.+... .+ |..++.|. ++ +++|. .+++++.|.+ .+|++|. ++++.+.++++
T Consensus 101 ~d~i~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~L~~~~~~~a~~~g~~~~~ggvy~~~~Gp~fe-t~ae~~~~~~~ 176 (261)
T PRK08666 101 DQFLDFTKNRHY-TF--YDGGESGVVHVDFTDPYCPELRKALITAARELGLTYHPGGTYVCTEGPRFE-TAAEIRMFRIL 176 (261)
T ss_pred hhhhhcCCCCCc-cc--cCCCCCCcCCCCCCcccCHHHHHHHHHHHHHCCCceEeccEEEEeeCCCcC-CHHHHHHHHHc
Confidence 999999875321 11 22222221 11 33432 2567887644 6688985 55556667778
Q ss_pred CCcEEecccccc
Q 031587 145 DATIKDMEVRAE 156 (157)
Q Consensus 145 ~a~~vdME~aav 156 (157)
|+++||||++++
T Consensus 177 gad~V~Me~~~e 188 (261)
T PRK08666 177 GGDLVGMTQVPE 188 (261)
T ss_pred CCCEEccchHHH
Confidence 999999999875
No 33
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.70 E-value=3e-16 Score=126.18 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=90.1
Q ss_pred EEEeecCCCCC----CHHHHHHHHH-HHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccC--
Q 031587 30 LNLILSEVDSV----GTISASLVTY-ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYG-- 102 (157)
Q Consensus 30 ~~l~~~gv~gi----G~vnAa~~~~-~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~-- 102 (157)
+.+...+ + |++++++++. +++.+++++.||++|+||||+ +++++||+||+++.++++.... .++ |.
T Consensus 75 Vv~~~g~---~H~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL~-~~l~~GDiVi~~d~i~~~~~~~--~~g-~~~~ 147 (272)
T PRK08202 75 VLAMQGR---FHYYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGLN-PDFGPGDLMLISDHINLTGRNP--LIG-PNDD 147 (272)
T ss_pred EEEEccC---CcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCC-CCCCCCCEEEEchhhhhCCCCc--ccC-CCcc
Confidence 5555555 7 9999999887 499999999999999999999 9999999999999999876432 111 21
Q ss_pred -CC-CCCCC---CChhHh---------hcCCceEEeE--eecceeeCCHHHHHHHHhCCCcEEecccccc
Q 031587 103 -VG-QRQAF---STPNLL---------RELNLKVCKL--STGDSLDMSSQDETSITANDATIKDMEVRAE 156 (157)
Q Consensus 103 -~~-~~p~~---~~~~l~---------~~~~~~~G~i--~S~d~fi~~~~~~~~l~~~~a~~vdME~aav 156 (157)
.+ ..+.+ .+++|. .+++++.|++ .+||+|....+ .+.++++||++|+||++++
T Consensus 148 ~~~~~~~~~~~~~d~~L~~~l~~~a~~~~~~~~~G~y~~~~Gp~feT~aE-~~~~~~~Gad~VgMe~~~e 216 (272)
T PRK08202 148 EFGPRFPDMSDAYDPELRALAKKVAKELGIPLQEGVYVGVSGPSYETPAE-IRMLRTLGADAVGMSTVPE 216 (272)
T ss_pred cCCCccCCCCcccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHH-HHHHHHcCCcEEecChHHH
Confidence 11 11222 234442 2577899998 99999997655 4566678999999999875
No 34
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.52 E-value=1.8e-13 Score=108.51 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=84.8
Q ss_pred EeecCCCCCC------HHH--HHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCC
Q 031587 32 LILSEVDSVG------TIS--ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGV 103 (157)
Q Consensus 32 l~~~gv~giG------~vn--Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~ 103 (157)
+..+| .| ++| |++.+ +.+++++.||++|.|||++ +++++||+||+++.++++.+.....|+ ++.
T Consensus 48 l~RhG---~~h~~~~~~V~~~A~i~a---l~~lGv~~ii~t~aaG~l~-~~l~~Gdlvi~~d~i~~~~~~p~t~~~-~~~ 119 (245)
T PRK09136 48 LARHG---HGHTIPPHKVNYRANIWA---LKQAGATRVLAVNTVGGIH-ADMGPGTLVVPDQIIDYTWGRKSTFFE-GDG 119 (245)
T ss_pred EecCC---CCCCCChHHcCcHHHHHH---HHHcCCCEEEEecccccCC-CCCCCCCEEEEHHHhhccCCCCCCCCC-CCC
Confidence 44566 88 888 45555 6789999999999999999 999999999999999887652211332 222
Q ss_pred CCCCC----CC-ChhHh---------hcCCce-EEeEe--ecceeeCCHHHHHHHHhCCCcEEeccccc
Q 031587 104 GQRQA----FS-TPNLL---------RELNLK-VCKLS--TGDSLDMSSQDETSITANDATIKDMEVRA 155 (157)
Q Consensus 104 ~~~p~----~~-~~~l~---------~~~~~~-~G~i~--S~d~fi~~~~~~~~l~~~~a~~vdME~aa 155 (157)
...+. .| +++|. .+++++ .|+.+ +|++| .++++.+.|+++||++|+||+++
T Consensus 120 ~~~~~~~~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~f-eT~AE~r~lr~~Gad~VgMs~~p 187 (245)
T PRK09136 120 EEVTHIDFTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRL-ETAAEIARLERDGCDLVGMTGMP 187 (245)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCc-CCHHHHHHHHHcCCCEEcCcHHH
Confidence 22221 11 34432 246766 58887 99999 88998999998999999999986
No 35
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.51 E-value=1.1e-13 Score=109.83 Aligned_cols=118 Identities=12% Similarity=0.139 Sum_probs=85.0
Q ss_pred ecCCCCCCHHHHHHHHHHHH------HHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC-CC
Q 031587 34 LSEVDSVGTISASLVTYASI------QALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG-QR 106 (157)
Q Consensus 34 ~~gv~giG~vnAa~~~~~li------~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~-~~ 106 (157)
.+| .|+++++..++.++ .+++++.||++|.|||++ +++++||+||+++.+++-......+++.-..+ ..
T Consensus 56 ~~G---r~h~y~g~~~~~~~~~i~~l~~lGv~~iI~t~aaG~l~-~~l~~Gdlvi~~d~i~~t~~~p~~~~~~~~~g~~~ 131 (248)
T TIGR01699 56 MKG---RGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLR-PEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERF 131 (248)
T ss_pred EeC---CCcccCCcchhhhcchHHHHHHcCCCEEEEecceeccC-CCCCCCCEECHHHHhhcCCCCCccCCCcccCCCCC
Confidence 456 99999999988887 899999999999999999 99999999999999988321110000000000 01
Q ss_pred CCC---CChhHh---------hcCCceEEeEee--cceeeCCHHHHHHHHhCCCcEEecccccc
Q 031587 107 QAF---STPNLL---------RELNLKVCKLST--GDSLDMSSQDETSITANDATIKDMEVRAE 156 (157)
Q Consensus 107 p~~---~~~~l~---------~~~~~~~G~i~S--~d~fi~~~~~~~~l~~~~a~~vdME~aav 156 (157)
..+ -+++|. .+++++.|+.++ |++|....+ .+.++++|+++|+||+++.
T Consensus 132 ~~~~~~yd~~Lr~~~~~~a~~~~~~~~~Gvy~~~~GP~FeT~AE-~r~~~~~Gad~VgMs~vpE 194 (248)
T TIGR01699 132 FSLANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAE-IRMMQIIGGDVVGMSVVPE 194 (248)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCceeeEEEEEeeCCCcCCHHH-HHHHHHcCCcEEccchhHH
Confidence 111 123331 256789999999 999996554 5667778999999999763
No 36
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=98.16 E-value=1.1e-05 Score=63.50 Aligned_cols=116 Identities=19% Similarity=0.149 Sum_probs=77.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHc-----CCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQAL-----KPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG 104 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~-----~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~ 104 (157)
+..+.+| ||.++-++.+.++|.-. +--.+|++|+|||+. +++|.+|+++.+++...+.+ |...-.|
T Consensus 101 Vl~vsHG---mGtpS~SImlhEliKLl~~Arckdp~~iRiGT~GGiG---v~pGTvV~s~~A~n~~l~~e---~eqiilG 171 (308)
T KOG3728|consen 101 VLCVSHG---MGTPSFSIMLHELIKLLYYARCKDPVFIRIGTCGGIG---VPPGTVVASKNAFNGLLRNE---HEQIILG 171 (308)
T ss_pred eEEEecC---CCCccHHHHHHHHHHHHHHccCCCceEEEEeccCccC---CCCccEEEehhhhhhhhhhh---HHhhhcc
Confidence 5566677 99999999999887532 234899999999986 79999999999886554322 1101112
Q ss_pred CCCCCC---Chh----Hh-------hcCCceEEeEeecceeeCCH-------------HHHHHHHh---CCCcEEecccc
Q 031587 105 QRQAFS---TPN----LL-------RELNLKVCKLSTGDSLDMSS-------------QDETSITA---NDATIKDMEVR 154 (157)
Q Consensus 105 ~~p~~~---~~~----l~-------~~~~~~~G~i~S~d~fi~~~-------------~~~~~l~~---~~a~~vdME~a 154 (157)
+.-.-| +++ |. ..+....|...++|.|+... ++.+.|.+ .|+.-+|||+.
T Consensus 172 krv~Rpaqld~~l~~eL~~~~~e~~d~~~ti~gnTmctddFYEGQgRlDGa~CdysEkdK~afLek~~a~GVrNIEMEss 251 (308)
T KOG3728|consen 172 KRVVRPAQLDKKLIRELLAFGVEANDGFQTISGNTMCTDDFYEGQGRLDGAFCDYSEKDKMAFLEKLHALGVRNIEMESS 251 (308)
T ss_pred ceeechhhhhHHHHHHHHHhCCccCCCCceeeccceecchhhcccccccccccCcchhhHHHHHHHHHHcCceeeehhHH
Confidence 111112 122 21 15678899999999998632 23445554 39999999985
No 37
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=97.98 E-value=7.4e-05 Score=60.16 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=65.0
Q ss_pred HHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCC--CCCC---ChhHh---------h
Q 031587 51 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQR--QAFS---TPNLL---------R 116 (157)
Q Consensus 51 ~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~--p~~~---~~~l~---------~ 116 (157)
+.+.+.+++.||.++.|||++ +++++||+||+++.++....... .| +..... +.+. ++.|. .
T Consensus 77 ~aLk~LGvk~iI~tnavGsl~-~~~~pGDlVv~~D~I~~tg~~p~-t~--~~g~~~~~~~~~~~y~~~Lr~~l~~aA~~~ 152 (267)
T PRK08564 77 WALKELGVEWVIAVSAVGSLR-EDYKPGDFVIPDQFIDMTKKREY-TF--YDGPVVAHVSMADPFCPELRKIIIETAKEL 152 (267)
T ss_pred HHHHHCCCcEEEEeccccccC-CCCCCCCEEeehhhhccCCCCCc-cc--CCCCccccCCCCcccCHHHHHHHHHHHHHc
Confidence 345678999999999999999 99999999999999876543110 11 111111 1111 22331 2
Q ss_pred cCCce-EEeEe-ecceeeCCHHHHHHHHhC-CCcEEeccc
Q 031587 117 ELNLK-VCKLS-TGDSLDMSSQDETSITAN-DATIKDMEV 153 (157)
Q Consensus 117 ~~~~~-~G~i~-S~d~fi~~~~~~~~l~~~-~a~~vdME~ 153 (157)
+++++ .|+.+ +.---+.++++.+.+++. |+++|-|=.
T Consensus 153 g~~~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~ 192 (267)
T PRK08564 153 GIRTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTL 192 (267)
T ss_pred CCceecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCc
Confidence 56777 47633 333334577888888886 999999954
No 38
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.00034 Score=56.05 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC---CCCCCC---ChhHh
Q 031587 42 TISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG---QRQAFS---TPNLL 115 (157)
Q Consensus 42 ~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~---~~p~~~---~~~l~ 115 (157)
+++..+- -+.+.+.+++.||.+-.+|||+ +++++||+|++++.+++.. ...| | |..+ ..+.+. +++|.
T Consensus 81 ~~~~ran-i~alk~lGV~~vi~tnAvGsl~-~~~~pGd~vv~~d~Id~t~-r~~~-~--~~~~~~~~~~d~s~~y~~~lr 154 (262)
T COG0005 81 SVNYRAN-IRALKALGVERVILTNAVGSLR-EEYKPGDLVVPDDHIDFTK-RQNP-F--YGGNDGVRFVDMSDPYDPELR 154 (262)
T ss_pred CchHHHH-HHHHHHcCCeEEEEeccccccc-ccCCCCCEEeehhheeccC-CCCc-c--cCCCCceeeCCCCCcCCHHHH
Confidence 4454444 5667788999999999999999 9999999999999998884 2222 2 2222 122221 23331
Q ss_pred -------h----cCCceEEe--EeecceeeCCHHHHHHHHhCCCcEEeccc
Q 031587 116 -------R----ELNLKVCK--LSTGDSLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 116 -------~----~~~~~~G~--i~S~d~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
+ .+..+.|+ ..+|-+| .++++.+.++.+||++|-|=.
T Consensus 155 ~~l~~~a~~~~~~~~~~~GvYv~~eGP~f-eT~AEirm~r~~GaDvVGMS~ 204 (262)
T COG0005 155 EALAEAAKELRLGHPLQEGVYVCVEGPRF-ETPAEIRMFRSLGADVVGMST 204 (262)
T ss_pred HHHHHHHhhcccCcccCceEEEEecCCCc-CCHHHHHHHHHhCCCcccCcC
Confidence 1 24455575 3344444 467878888888999999853
No 39
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=97.64 E-value=0.00048 Score=56.09 Aligned_cols=98 Identities=12% Similarity=0.204 Sum_probs=63.4
Q ss_pred HHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC--CCCCCC---ChhHh-------h--
Q 031587 51 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG--QRQAFS---TPNLL-------R-- 116 (157)
Q Consensus 51 ~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~--~~p~~~---~~~l~-------~-- 116 (157)
+.+...+++.||.+..|||++ +++++||+|++++.++.-.....+.| ..+ ..+.+. ++.|. +
T Consensus 73 ~alk~lGv~~ii~tnA~Gsln-~~~~pGd~vi~~D~In~t~~~~~~~~---g~~~~~f~~m~~~y~~~Lr~~l~~~a~~~ 148 (289)
T PRK08931 73 DALKRAGVTDIVSLSACGSFR-EELPPGTFVIVDQFIDRTFAREKSFF---GTGCVAHVSMAHPVCPRLGDRLAAAARAE 148 (289)
T ss_pred HHHHHcCCCEEEEecccccCC-CCCCCCCEEeehhhhccCCCCCCCcc---CCCcccCCCCCcccCHHHHHHHHHHHHHc
Confidence 355678999999999999999 99999999999999866322111123 221 112211 23331 2
Q ss_pred cCCceE-Ee--EeecceeeCCHHHHHHHHhCCCcEEeccc
Q 031587 117 ELNLKV-CK--LSTGDSLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 117 ~~~~~~-G~--i~S~d~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
+++++. |+ ...|.+| .++++.+.++..||++|-|=.
T Consensus 149 ~~~~~~~GvYv~~~GPrf-ET~AEir~~r~~GaDvVGMSt 187 (289)
T PRK08931 149 GITVHRGGTYLCMEGPQF-STLAESKLYRSWGCDVIGMTN 187 (289)
T ss_pred CCeEecceEEEEeeCCCC-CCHHHHHHHHHcCCCEeccCc
Confidence 456563 44 3344444 467777778888999999943
No 40
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=97.63 E-value=0.001 Score=52.72 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCCCCCC--C-ChhHh---
Q 031587 42 TISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQRQAF--S-TPNLL--- 115 (157)
Q Consensus 42 ~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~~p~~--~-~~~l~--- 115 (157)
.+|...+--+.+...+++.||.+..+||++ +++++||+++.++.+++... .|.++ ...+.+ | +++|.
T Consensus 67 ~~~~v~~~i~al~~lGv~~ii~tna~Gsl~-~~~~pGdlv~~~D~I~~t~~--~pl~g----~~~~d~~~~yd~~Lr~~a 139 (237)
T TIGR01698 67 DARAVVHPVRTARATGAETLILTNAAGGLR-QDWGPGTPVLISDHINLTAR--SPLIG----PRFVDLTDAYSPRLRELA 139 (237)
T ss_pred cHHHhHHHHHHHHHcCCCEEEEEcccccCC-CCCCCCCEEeechhcccCCC--CCCCC----CccCCCCcccCHHHHHHH
Confidence 344323344556778999999999999999 99999999999999876432 12221 111111 1 23332
Q ss_pred --hcCCceEEeEe-ecceeeCCHHHHHHHHhCCCcEEeccc
Q 031587 116 --RELNLKVCKLS-TGDSLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 116 --~~~~~~~G~i~-S~d~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
.+++++.|+-+ +.---+.++++.+.+++.|+++|=|=+
T Consensus 140 ~~~~~~~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~ 180 (237)
T TIGR01698 140 ERVDPPLAEGVYAWFPGPHYETPAEIRMAGILGADLVGMST 180 (237)
T ss_pred HHcCCCccCEEEEEecCCCcCCHHHHHHHHHcCCCEeccCc
Confidence 24567788633 223334567778888888999999943
No 41
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.0012 Score=51.88 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=48.0
Q ss_pred EEEEEeecCC---CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecC
Q 031587 28 ANLNLILSEV---DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDR 91 (157)
Q Consensus 28 ~~~~l~~~gv---~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~ 91 (157)
.-+.++.+|. -=.++||--+-.-.| ...+++.||++-.||+|+ +++++||+|++++++....
T Consensus 54 ~cvllARHGr~H~imPt~Vn~rANiwAL-k~~gc~~ii~~tAcGSLr-e~I~Pgd~v~p~q~IDrTt 118 (283)
T KOG3985|consen 54 HCVLLARHGRKHDIMPTKVNFRANIWAL-KSLGCTAIISFTACGSLR-EEIKPGDFVLPDQIIDRTT 118 (283)
T ss_pred EEEEEeccccCCccCCCcCchhHhHHHH-HhCCCcEEEEeecccccc-ccCCCccEecchhhhhhhc
Confidence 3567788885 234567755544443 567999999999999999 9999999999999886544
No 42
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=97.46 E-value=0.0019 Score=52.69 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred HHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCCC--CCCCC---ChhHh-------h--
Q 031587 51 ASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVGQ--RQAFS---TPNLL-------R-- 116 (157)
Q Consensus 51 ~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~~--~p~~~---~~~l~-------~-- 116 (157)
+.+...+++.||.+..+||++ +++++||+|+.++.++...... ..| |.... .+.+. ++.|. +
T Consensus 73 ~alk~lGv~~ii~tna~Gsln-~~~~pGdlvv~~D~Id~t~~rp-~t~--~~~~~~~~~~~~~~y~~~Lr~~l~~~a~~~ 148 (290)
T PRK07432 73 YAMKQLGVEYLISASAVGSLK-EEAKPLDMVVPDQFIDRTKNRI-STF--FGEGIVAHIGFGDPICPALAGVLADAIASL 148 (290)
T ss_pred HHHHHcCCCEEEEEecccccc-CCCCCCCEEeecceecCCCCCC-Ccc--cCCCcccCCcCCCCcCHHHHHHHHHHHHHc
Confidence 345678999999999999999 9999999999999987543211 112 11110 11121 23321 1
Q ss_pred cC---Cce-EEeEeecc-eeeCCHHHHHHHHhCCCcEEeccc
Q 031587 117 EL---NLK-VCKLSTGD-SLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 117 ~~---~~~-~G~i~S~d-~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
++ +++ .|+.+... --+.++++.+.++..|+++|-|=.
T Consensus 149 ~~~~~~~~~~GvYv~~~GPrfET~AEir~~r~~GaDvVGMS~ 190 (290)
T PRK07432 149 NLPDVTLHRGGTYVCMEGPAFSTKAESNLYRSWGATVIGMTN 190 (290)
T ss_pred CCCccceeCCeEEEEeeCCCCCcHHHHHHHHHcCCCEeccCc
Confidence 22 566 57644332 233567777778888999999943
No 43
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=97.27 E-value=0.0027 Score=51.13 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=61.4
Q ss_pred HHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecCCCCccCccccCCC-CCCCCC---ChhHh------hcCCce
Q 031587 52 SIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDRRIPIPVFDLYGVG-QRQAFS---TPNLL------RELNLK 121 (157)
Q Consensus 52 li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~~~~~~~f~~~~~~-~~p~~~---~~~l~------~~~~~~ 121 (157)
.+...+++.||.+..+||++ +++++||+|+++..++.-.... ..| |+.+ ..+.+. ++.|. .. .++
T Consensus 75 alk~lGv~~ii~tnA~Gsln-~~~~pGdlvi~dd~id~t~~~p-~t~--~~~g~~f~~m~~~y~~~Lr~~l~~~a~-~~~ 149 (264)
T PRK07823 75 ALRALGVRRVFAPCAVGSLR-PELGPGTVVVPDQLVDRTSGRA-QTY--FDSGGVHVSFADPYCPTLRAAALGLPG-VVD 149 (264)
T ss_pred HHHHcCCCEEEEecccccCC-CCCCCCCEEEcchhhhccCCCC-CCc--cCCCccCCCCCcccCHHHHHHHHHHHh-hcC
Confidence 44567999999999999999 9999999999988875432111 112 2222 112221 23331 12 466
Q ss_pred EEeEee-cceeeCCHHHHHHHHhCCCcEEeccc
Q 031587 122 VCKLST-GDSLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 122 ~G~i~S-~d~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
.|+.+. .---+.++++.+.++..|+++|-|=.
T Consensus 150 ~GvY~~~~GP~fET~AEir~~r~~GaDvVGMS~ 182 (264)
T PRK07823 150 GGTMVVVQGPRFSTRAESRWFAAQGWSLVNMTG 182 (264)
T ss_pred CeEEEEeeCCCCCCHHHHHHHHHcCCCEeccCc
Confidence 776332 22233567778888888999999943
No 44
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=97.02 E-value=0.0014 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=55.7
Q ss_pred ceeEEEcCee--EEEEEEeec-CC----CCCCHHHHHHHHHHHHHHcC----CCEEEEEeeecccCCCCCCcccEEEecc
Q 031587 17 QQEYEIHDLF--FANLNLILS-EV----DSVGTISASLVTYASIQALK----PDLIINAGTAGGFKAKGASIGDVFLISD 85 (157)
Q Consensus 17 ~~~~~~~~~~--f~~~~l~~~-gv----~giG~vnAa~~~~~li~~~~----~~~ii~~G~aG~l~~~~l~iGDvvi~~~ 85 (157)
.+.+.+.|.. +..+.+... +| +|+|++|||+.++.|+..-. =...|..||||.-+ ..-.+|+++++.-
T Consensus 25 ~~~i~vpG~s~~~~~v~cn~~~~Vc~~~tG~G~~nAAasi~AL~ldp~FDls~tYfliaGIAGv~P-~~~tlGSvawA~~ 103 (314)
T PF06516_consen 25 DHNITVPGLSPLYPPVHCNADGGVCGITTGEGEINAAASIMALGLDPRFDLSKTYFLIAGIAGVDP-KQGTLGSVAWARY 103 (314)
T ss_pred CeEEeeCCCCCCCCceEEcCCCCEEEEEecccccchHHHHHHHhhCCccCCcceEEEEeecccCCc-CcCceeeeeeeee
Confidence 4567777772 334444333 44 56999999999988875322 24899999999555 8899999999999
Q ss_pred eEEecCC
Q 031587 86 VAFHDRR 92 (157)
Q Consensus 86 ~~~~d~~ 92 (157)
+++.|..
T Consensus 104 ~Vd~dl~ 110 (314)
T PF06516_consen 104 VVDGDLQ 110 (314)
T ss_pred eechhhc
Confidence 9998764
No 45
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.039 Score=44.76 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=52.4
Q ss_pred cceeEEEcCee--EEEEEEeecCC----CCCCHHHHHHHHHHHHHHcCC----CEEEEEeeecccCCCCCCcccEEEecc
Q 031587 16 TQQEYEIHDLF--FANLNLILSEV----DSVGTISASLVTYASIQALKP----DLIINAGTAGGFKAKGASIGDVFLISD 85 (157)
Q Consensus 16 ~~~~~~~~~~~--f~~~~l~~~gv----~giG~vnAa~~~~~li~~~~~----~~ii~~G~aG~l~~~~l~iGDvvi~~~ 85 (157)
-.+++.+.|+. +=.+.....|| +|||+.|||.....|+..-+. ...+..|||| ++|..-.+|..-++.-
T Consensus 59 lt~~I~vpGLs~~yP~v~cn~~gvcq~tTgmG~AnAassvsAL~ls~kfdlt~tyfLiAGIAG-idP~~gtlGSaawARy 137 (349)
T COG5042 59 LTEKIAVPGLSPDYPAVHCNADGVCQMTTGMGKANAASSVSALLLSKKFDLTKTYFLIAGIAG-IDPKAGTLGSAAWARY 137 (349)
T ss_pred ccceeeccccCCCCcccccCccchhhhhcccchhhHHHHHHHHHhccccCcceeeeeeeeccc-cCccccccchhHHhhh
Confidence 45677888876 33344444555 679999999998887754333 4788899998 5547788888777766
Q ss_pred eEEecC
Q 031587 86 VAFHDR 91 (157)
Q Consensus 86 ~~~~d~ 91 (157)
++.+|.
T Consensus 138 aVD~dl 143 (349)
T COG5042 138 AVDADL 143 (349)
T ss_pred hccccc
Confidence 665554
No 46
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=91.98 E-value=1 Score=35.90 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=59.0
Q ss_pred HHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEecC-CCC-------ccCccccCCCCCCCCCC---hhHh---
Q 031587 50 YASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHDR-RIP-------IPVFDLYGVGQRQAFST---PNLL--- 115 (157)
Q Consensus 50 ~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d~-~~~-------~~~f~~~~~~~~p~~~~---~~l~--- 115 (157)
-+.++..+++.++.+--|||++ ++.++||+-+-..=++.=. -.+ .|+|+ ...|.+.+ .+|.
T Consensus 100 vrVm~l~Gv~~lvvTnaAggin-~~f~vgdiMli~DHin~~G~agq~pl~Gpnd~rfG----~rf~a~sdAYd~~lr~~a 174 (286)
T KOG3984|consen 100 VRVMQLLGVRILVVTNAAGGIN-PKFAVGDIMLIKDHINLPGLAGQNPLRGPNDPRFG----VRFPALSDAYDKDLRQKA 174 (286)
T ss_pred HHHHHHcCceEEEEeccccCcC-cccccccEEEEecccCCccccCCCCCCCCCccccc----ccccchhhhhhHHHHHHH
Confidence 4666778999999999999999 9999999987655432210 000 01221 01111111 1121
Q ss_pred ----h----cCCceEEeEe-ecceeeCCHHHHHHHHhCCCcEEeccc
Q 031587 116 ----R----ELNLKVCKLS-TGDSLDMSSQDETSITANDATIKDMEV 153 (157)
Q Consensus 116 ----~----~~~~~~G~i~-S~d~fi~~~~~~~~l~~~~a~~vdME~ 153 (157)
+ .-.+|+|..+ .+.-.+.+.++.+.|+..|+++|-|-+
T Consensus 175 ~~~~K~m~iqr~lheGvy~~vgGP~~eT~AE~rmlr~mg~dAVGMSt 221 (286)
T KOG3984|consen 175 LEIGKAMGIQRTLHEGVYACVGGPIFETRAESRMLRTMGADAVGMST 221 (286)
T ss_pred HHHHHHhcccchhhcceEEEecCCccccHHHHHHHHHhCcccccccc
Confidence 1 3468888633 233334456666667777999999964
No 47
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=73.41 E-value=4.3 Score=31.92 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcc
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFKAKGASIG 78 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iG 78 (157)
+...+..++.+++|+.||.+|.+|+-+ .+.+=
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~--~itlE 80 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRS--MITVE 80 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcC--ceEeE
Confidence 455778888999999999999999986 45543
No 48
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=73.27 E-value=10 Score=29.34 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=32.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccE
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDV 80 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDv 80 (157)
+.-.... .---.+..++.+.|++++|+.+|++|-|||-. ++.+--|
T Consensus 36 V~~~~lP---~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~--~iT~ERV 81 (207)
T COG2039 36 VKGRILP---VVFKKSIDALVQAIAEVQPDLVLAIGQAGGRT--KITPERV 81 (207)
T ss_pred EEEEEcC---ccHHHHHHHHHHHHHhhCCCeEEEecccCCCC--cCChhhe
Confidence 4444444 33344667788889999999999999999986 5555433
No 49
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=72.83 E-value=13 Score=28.47 Aligned_cols=29 Identities=34% Similarity=0.437 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 43 ISASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 43 vnAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
-.+...+..++++++|+.||.+|.+++-+
T Consensus 46 ~~~~~~l~~~l~~~~PdlVIhlGva~~~~ 74 (202)
T PF01470_consen 46 EKAFEALEELLEEHQPDLVIHLGVAGGRK 74 (202)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEEE-TT-S
T ss_pred HhHHHHHHHHHHhcCCcEEEEEeecCCcc
Confidence 34555677888999999999999999876
No 50
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=67.97 E-value=15 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
+...+..++++++|+.+|.+|.+|+-+
T Consensus 49 ~~~~l~~~~~~~~Pd~vi~~G~a~gr~ 75 (211)
T PRK13196 49 AMAALSRLLDELQPSAVLLTGLAAGRP 75 (211)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCcC
Confidence 455778888999999999999999876
No 51
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=61.51 E-value=12 Score=29.02 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 44 SASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 44 nAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
.+...+..++++++|+.||.+|.+|+-+
T Consensus 47 ~~~~~l~~~~~~~~Pd~vl~~G~a~~r~ 74 (209)
T PRK13193 47 KIEDLIVTKIREMKPILTLGIGVAPGRA 74 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccCCcC
Confidence 3555677788899999999999999876
No 52
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=61.14 E-value=12 Score=29.02 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 44 SASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 44 nAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
.+.-.+..++++++|+.||.+|.+|+-+
T Consensus 47 ~~~~~l~~~l~~~~Pd~vlhlG~a~~r~ 74 (208)
T PRK13194 47 RAREELEKVLDEIKPDITINLGLAPGRT 74 (208)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeccCCcc
Confidence 3455677778888999999999999876
No 53
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=53.38 E-value=18 Score=28.04 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
+.-.+..++++++|+.||.+|.+|+-.
T Consensus 46 ~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 46 AIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 344567778888999999999999875
No 54
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=47.41 E-value=26 Score=26.47 Aligned_cols=27 Identities=44% Similarity=0.556 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
+...+.+++.+++|+.+|.+|.+++-+
T Consensus 48 ~~~~~~~~~~~~~pd~vlhlG~~~~~~ 74 (194)
T cd00501 48 AVEVLPELIEEHKPDLVIHVGLAGGRS 74 (194)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 344567788899999999999999865
No 55
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.66 E-value=30 Score=26.90 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
+.-.+..++.+.+|+.||.+|.+|+-+
T Consensus 49 ~~~~l~~~l~~~~Pd~vih~G~a~~~~ 75 (215)
T PRK13197 49 SAEVLKEAIEEVQPDAVICIGQAGGRT 75 (215)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 344555777888999999999999875
No 56
>PF01141 Gag_p12: Gag polyprotein, inner coat protein p12; InterPro: IPR002079 The retroviral p12 protein is a proline rich virion structural protein found in the inner coat. The function carried out by p12 in assembly and replication is unknown. p12 is associated with pathogenicity of the virus [].; GO: 0019028 viral capsid
Probab=45.50 E-value=8.9 Score=25.30 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=8.9
Q ss_pred CCCCCccccccccc
Q 031587 2 DTNGTDIDVVGHTC 15 (157)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (157)
|..||+|||+-..-
T Consensus 19 d~ggPLIDLLtEdp 32 (85)
T PF01141_consen 19 DSGGPLIDLLTEDP 32 (85)
T ss_pred CCCCchhhhhccCC
Confidence 56777777765443
No 57
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=41.48 E-value=28 Score=27.11 Aligned_cols=25 Identities=44% Similarity=0.566 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecc
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGG 69 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~ 69 (157)
=.++.|+||-+.+|+.||=+|++-|
T Consensus 20 Dm~~~qeli~~~kPd~IIE~Gi~~G 44 (206)
T PF04989_consen 20 DMVAYQELIWELKPDLIIETGIAHG 44 (206)
T ss_dssp HHHHHHHHHHHH--SEEEEE--TTS
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4567899999999999999999864
No 58
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=36.96 E-value=82 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=23.8
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEeeecc
Q 031587 31 NLILSEVDSVGTISASLVTYASIQAL-KPDLIINAGTAGG 69 (157)
Q Consensus 31 ~l~~~gv~giG~vnAa~~~~~li~~~-~~~~ii~~G~aG~ 69 (157)
.|..+| .=+-+.+..+.++-+.- .|+.+|.+|.|+-
T Consensus 52 iLlVTG---~vT~~~~e~lkk~Yea~PePKiViA~GaCa~ 88 (148)
T COG3260 52 ILLVTG---AVTRQMREPLKKAYEAMPEPKIVIAVGACAL 88 (148)
T ss_pred EEEEec---cccHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence 344455 44445566666665554 5999999999973
No 59
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=36.50 E-value=1e+02 Score=24.82 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=33.7
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
+.+..|| .-|++-.+.-.+..+++.++||.+|.++=-++++
T Consensus 34 vrv~gsG-aKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~P 74 (277)
T PRK00994 34 VRVVGSG-AKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAP 74 (277)
T ss_pred EEEeccC-CCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 3444444 4599999999999999999999999999888876
No 60
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=35.22 E-value=95 Score=24.60 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=31.2
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 29 NLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
.+.+..|| .-|++-..-.+...++++|+||.||.+|=--+..
T Consensus 33 ~vrVvgsg-aKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaP 74 (277)
T COG1927 33 EVRVVGSG-AKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAP 74 (277)
T ss_pred eEEEeccc-cccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 35555555 3478877677788999999999999998665554
No 61
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=33.85 E-value=1.7e+02 Score=26.56 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=35.0
Q ss_pred EEEEEeecCCCCCCHHHHH-HHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEE
Q 031587 28 ANLNLILSEVDSVGTISAS-LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (157)
Q Consensus 28 ~~~~l~~~gv~giG~vnAa-~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~ 88 (157)
..+.+|.+| +|..-.. ...++.+++.+++.-+--...+..+ ....--|++++++-+.
T Consensus 508 KILvaCGsG---iGTStmva~kIkk~Lke~GI~veV~~~~Vsev~-s~~~~aDIIVtt~~La 565 (602)
T PRK09548 508 RILAVCGQG---QGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK-GKLETIDIIVCSKHLA 565 (602)
T ss_pred EEEEECCCC---chHHHHHHHHHHHHHHHcCCCeEEEEechHhCc-ccCCCCCEEEEcccch
Confidence 345667777 7765433 3467888888887544444444454 4444458999887654
No 62
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.99 E-value=1.5e+02 Score=19.58 Aligned_cols=58 Identities=5% Similarity=-0.166 Sum_probs=33.4
Q ss_pred EEEEeecCCCCCCHHHH-HHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEec
Q 031587 29 NLNLILSEVDSVGTISA-SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFHD 90 (157)
Q Consensus 29 ~~~l~~~gv~giG~vnA-a~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~d 90 (157)
.+.++.+| +|.... +.-+++++.+.+.+.=+.-..-..+. ..++--|+|+.+.-+.++
T Consensus 5 ILvvCgsG---~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~-~~~~~~D~iv~t~~~~~~ 63 (94)
T PRK10310 5 IIVACGGA---VATSTMAAEEIKELCQSHNIPVELIQCRVNEIE-TYMDGVHLICTTARVDRS 63 (94)
T ss_pred EEEECCCc---hhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHh-hhcCCCCEEEECCccccc
Confidence 34566666 776665 45567778777776433332222344 333445888887655443
No 63
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=31.72 E-value=56 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEE
Q 031587 40 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVF 81 (157)
Q Consensus 40 iG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvv 81 (157)
++.+.+-..+.+.+.+.++..|..-|.+|-++|..++++|+-
T Consensus 129 iD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~ 170 (268)
T PRK15116 129 IDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLA 170 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeee
Confidence 566667777777777889999888888888886668899863
No 64
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=31.30 E-value=76 Score=25.88 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCccc
Q 031587 39 SVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGD 79 (157)
Q Consensus 39 giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGD 79 (157)
|+||...|+++...+.+-+-+.++. +.+ |.-.++|
T Consensus 11 GVGKTT~aaA~A~~~A~~G~rtLlv-----S~D-pa~~L~d 45 (305)
T PF02374_consen 11 GVGKTTVAAALALALARRGKRTLLV-----STD-PAHSLSD 45 (305)
T ss_dssp TSSHHHHHHHHHHHHHHTTS-EEEE-----ESS-TTTHHHH
T ss_pred CCCcHHHHHHHHHHHhhCCCCeeEe-----ecC-CCccHHH
Confidence 7999999988887777766554443 455 5555555
No 65
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=30.60 E-value=59 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.025 Sum_probs=30.3
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccC
Q 031587 28 ANLNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFK 71 (157)
Q Consensus 28 ~~~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~ 71 (157)
|.+++..++ +=+-.+.--+.++|.+.+.+.|..+|++|+..
T Consensus 40 yD~i~lG~w---~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 40 YDLIFLGFW---IDKGTPDKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred CCEEEEEcC---ccCCCCCHHHHHHHHHccCCeEEEEEecCCCC
Confidence 445566666 43334556678888999999999999999874
No 66
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.96 E-value=94 Score=24.38 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccE
Q 031587 40 VGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDV 80 (157)
Q Consensus 40 iG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDv 80 (157)
+....+-..+.+.+.+.++..|...|.+|-++|..+++.|+
T Consensus 110 iD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di 150 (231)
T cd00755 110 IDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADI 150 (231)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccE
Confidence 45566666677777777888888888777788666888886
No 67
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.83 E-value=1.9e+02 Score=19.25 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=34.4
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEe
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~ 89 (157)
+.++.+| ++..-.+--+++.+++.+.+.-+....-+.+. ..+.--|+|+.+.=+.|
T Consensus 7 Ll~C~~G---~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~-~~~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 7 LLLCAAG---MSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAG-EKLDDADVVLLAPQVAY 62 (95)
T ss_pred EEECCCc---hhHHHHHHHHHHHHHHCCCcEEEEEecHHHHH-hhcCCCCEEEECchHHH
Confidence 4556666 77555555566777788888666555555554 44455588887654433
No 68
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=26.80 E-value=86 Score=19.98 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=35.2
Q ss_pred EEEeecCCCCCCHHHHH-HHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEe
Q 031587 30 LNLILSEVDSVGTISAS-LVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa-~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~ 89 (157)
+.++.+| +|....+ ..+++.+.+.+++.....+.-.... ....--|+|+.+.-+.+
T Consensus 3 lvvC~~G---i~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~-~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 3 LVVCGSG---IGTSLMVANKIKKALKELGIEVEVSAGSILEVE-EIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEESSS---SHHHHHHHHHHHHHHHHTTECEEEEEEETTTHH-HHHTT-SEEEEEESSGG
T ss_pred EEECCCh---HHHHHHHHHHHHHHHHhccCceEEEEecccccc-cccCCCcEEEEcCccch
Confidence 4566667 8876655 5677888888988887777611111 12233588888665544
No 69
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=25.20 E-value=2e+02 Score=23.86 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEE
Q 031587 38 DSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVF 81 (157)
Q Consensus 38 ~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvv 81 (157)
.|+||...|+++...+.+.+ +.++.+= .+ |..+++|+.
T Consensus 11 GGVGKTT~aaA~A~~lA~~g-~kvLlvS----tD-PAhsL~d~f 48 (322)
T COG0003 11 GGVGKTTIAAATAVKLAESG-KKVLLVS----TD-PAHSLGDVF 48 (322)
T ss_pred CcccHHHHHHHHHHHHHHcC-CcEEEEE----eC-CCCchHhhh
Confidence 47999887777766666666 4333332 33 444555543
No 70
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=24.76 E-value=1.9e+02 Score=21.14 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEEeeeccc
Q 031587 40 VGTISASLVTYASIQA-LKPDLIINAGTAGGF 70 (157)
Q Consensus 40 iG~vnAa~~~~~li~~-~~~~~ii~~G~aG~l 70 (157)
.-..+.+-.+.++.++ -+++.||.+|.|...
T Consensus 66 ~vt~~~~~~l~~~~e~~p~pk~VIA~GsCA~~ 97 (145)
T TIGR01957 66 TVTKKMAPALRRLYDQMPEPKWVISMGACANS 97 (145)
T ss_pred CCcHHHHHHHHHHHHhccCCceEEEecceeec
Confidence 3333455556666554 369999999999443
No 71
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=23.55 E-value=2.4e+02 Score=20.76 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=24.3
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Q 031587 31 NLILSEVDSVGTISASLVTYASIQALKPDLIINA 64 (157)
Q Consensus 31 ~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~ 64 (157)
++..+|.+|-||...|.++++.|...+....+.=
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 4556666779999999888887777666655543
No 72
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]
Probab=23.41 E-value=53 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.0
Q ss_pred ecccCCCCCCcccEEEecceEEec
Q 031587 67 AGGFKAKGASIGDVFLISDVAFHD 90 (157)
Q Consensus 67 aG~l~~~~l~iGDvvi~~~~~~~d 90 (157)
+||+. |.++.||.|+..+..+..
T Consensus 38 s~SM~-Ptl~~GD~v~v~k~~~~~ 60 (166)
T COG0681 38 SGSME-PTLNVGDRVLVKKFSYGF 60 (166)
T ss_pred CCccc-cccccCCEEEEEeccccc
Confidence 48999 999999999999987664
No 73
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.88 E-value=2.4e+02 Score=18.68 Aligned_cols=56 Identities=14% Similarity=-0.018 Sum_probs=34.6
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEEe
Q 031587 30 LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAFH 89 (157)
Q Consensus 30 ~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~~ 89 (157)
+.++.+| ++..-.+-.+++.+.+.+.+.=+.....+.+. ....--|+|+...-+.+
T Consensus 3 l~~Cg~G---~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~-~~~~~~Diil~~Pqv~~ 58 (96)
T cd05564 3 LLVCSAG---MSTSILVKKMKKAAEKRGIDAEIEAVPESELE-EYIDDADVVLLGPQVRY 58 (96)
T ss_pred EEEcCCC---chHHHHHHHHHHHHHHCCCceEEEEecHHHHH-HhcCCCCEEEEChhHHH
Confidence 3455566 77665555667778888887655555444454 34455688887755444
No 74
>PRK13236 nitrogenase reductase; Reviewed
Probab=22.35 E-value=2.1e+02 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 031587 37 VDSVGTISASLVTYASIQALKPDLIIN 63 (157)
Q Consensus 37 v~giG~vnAa~~~~~li~~~~~~~ii~ 63 (157)
-.|+||...++.+...+.+.+-+.++.
T Consensus 14 KGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 347999999998888888777665544
No 75
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=21.83 E-value=1.8e+02 Score=20.51 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=40.8
Q ss_pred eEEEcCeeEEE-EEEeecCCCCCCHHHHHHHHHHHHHHcCCCEEEEEeeecccCCCC---CCcccEEEe
Q 031587 19 EYEIHDLFFAN-LNLILSEVDSVGTISASLVTYASIQALKPDLIINAGTAGGFKAKG---ASIGDVFLI 83 (157)
Q Consensus 19 ~~~~~~~~f~~-~~l~~~gv~giG~vnAa~~~~~li~~~~~~~ii~~G~aG~l~~~~---l~iGDvvi~ 83 (157)
.+.+.+...+. ..+..|| .+..+..+.+..+.++.+.......++=|.-. .+ +..||+||=
T Consensus 24 ~lDv~~~s~~tDyfVIatg---~s~rhv~Aiad~i~~~~k~~g~~~~~~EG~~~-~~WvliD~GdivVH 88 (115)
T COG0799 24 VLDVSGKSSLTDYFVIATG---NSSRHVKAIADNVKEELKEAGEVPLRIEGLSE-GEWVLIDLGDIVVH 88 (115)
T ss_pred EEEccCCcccccEEEEEEe---CchHHHHHHHHHHHHHHHHcCCCcccccCCCc-CCEEEEecCcEEEE
Confidence 34444444332 4566777 88999998888888887777766767766443 33 667887764
No 76
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=21.32 E-value=1.4e+02 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEEecceEE
Q 031587 45 ASLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFLISDVAF 88 (157)
Q Consensus 45 Aa~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi~~~~~~ 88 (157)
++++...++..|=.+....-| .++. |.++.||+|+.++..+
T Consensus 7 ~~~~~~~~i~~~~~~~~~v~g--~SM~-Ptl~~Gd~vlv~k~~~ 47 (163)
T TIGR02227 7 IAILLALLIRTFVFFPYKIPG--GSME-PTLKEGDRILVNKFAY 47 (163)
T ss_pred HHHHHHHHHHhhEEEEEEECC--cccc-cchhCCCEEEEEEeEc
Confidence 345555556555445444444 6888 9999999999988754
No 77
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=21.18 E-value=1.8e+02 Score=25.13 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCEEEEEeeecccCCCCCCcccEEE
Q 031587 46 SLVTYASIQALKPDLIINAGTAGGFKAKGASIGDVFL 82 (157)
Q Consensus 46 a~~~~~li~~~~~~~ii~~G~aG~l~~~~l~iGDvvi 82 (157)
+..+++|-++|+-+.+-.. +-- + ..-+.+||||
T Consensus 151 S~llErL~drypkkliqty-sVf--P-n~d~ssdVVV 183 (448)
T KOG1374|consen 151 SFLLERLNDRYPKKLVQTY-SVF--P-NQDESSDVVV 183 (448)
T ss_pred HHHHHHHHHhchhhhheee-eec--c-CCCCccceEE
Confidence 7889999888765444333 222 2 3447889988
No 78
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=21.12 E-value=1.6e+02 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEEeeec
Q 031587 40 VGTISASLVTYASIQAL-KPDLIINAGTAG 68 (157)
Q Consensus 40 iG~vnAa~~~~~li~~~-~~~~ii~~G~aG 68 (157)
.-..+.+-.+.++.++- .|+.||.+|.|.
T Consensus 79 ~vT~km~~~l~~~yeqmPePK~VIA~G~CA 108 (173)
T PRK14818 79 TLTYKMAERARLLYDQMPEPKYVISMGSCS 108 (173)
T ss_pred cCccccHHHHHHHHHhCCCCCEEEEecccc
Confidence 66666677777777654 699999999984
No 79
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=20.63 E-value=2.1e+02 Score=21.96 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEEeeeccc
Q 031587 40 VGTISASLVTYASIQA-LKPDLIINAGTAGGF 70 (157)
Q Consensus 40 iG~vnAa~~~~~li~~-~~~~~ii~~G~aG~l 70 (157)
.-..+.+-.+.++.++ -+|+.||.+|.|..-
T Consensus 76 ~Vt~km~~~l~~~y~qmPePK~VIA~GaCA~s 107 (189)
T PRK14813 76 TVTMKMAERVVRLYEQMPEPRYVLSMGSCSNC 107 (189)
T ss_pred cCchhhHHHHHHHHHhCCCCCEEEEecccccC
Confidence 4455556666666655 379999999998643
Done!