BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031588
(157 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 135/149 (90%), Positives = 140/149 (93%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
M ST Q PSLKRRD PV+REGD LT+ PLGAGNEVGRSCVYMSYKGK +LFDCGIHPAYS
Sbjct: 1 MGSTAQSPSLKRRDAPVTREGDVLTVTPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLLT
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVS+EDMLFDEQDINRSMD+IEV
Sbjct: 121 DYVKVSKVSIEDMLFDEQDINRSMDKIEV 149
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 136/150 (90%), Positives = 143/150 (95%), Gaps = 1/150 (0%)
Query: 1 MASTGQPPSLKRRDVPVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MASTGQ SLKRRD PV+REG DQLT+ PLGAGNEVGRSCVYMS+KGKT+LFDCGIHPAY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLL 119
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL 120
Query: 120 TDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
TDYVKVSKVSVEDMLFDE+DINRSMD+IEV
Sbjct: 121 TDYVKVSKVSVEDMLFDEKDINRSMDKIEV 150
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/149 (89%), Positives = 139/149 (93%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG P SLKR D ++REGDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDML+DEQDI RSMD+IEV
Sbjct: 121 DYVKVSKVSVEDMLYDEQDILRSMDKIEV 149
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 133/150 (88%), Positives = 142/150 (94%), Gaps = 1/150 (0%)
Query: 1 MASTGQPPSLKRRDVPVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MASTGQ SLKRRD PV+REG DQLT+ PLGAGNEVGRSCVYMS+KGKT+LFDCGIH AY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLL 119
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAI+KLLL
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKLLL 120
Query: 120 TDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
T+YVKVSKVSVEDMLFDE+DINRSMD+IEV
Sbjct: 121 TNYVKVSKVSVEDMLFDEKDINRSMDKIEV 150
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 133/149 (89%), Positives = 139/149 (93%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG P SLKR D ++REGDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDML+DEQDI RSMD+IEV
Sbjct: 121 DYVKVSKVSVEDMLYDEQDILRSMDKIEV 149
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 130/149 (87%), Positives = 138/149 (92%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS GQPPSLK+RD +RE DQL I PLGAGNEVGRSCVYMSYKGK +LFDCGIHPAYS
Sbjct: 1 MASLGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLL 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
D+VKVSKVSVEDML+DEQDI+RSMD+IEV
Sbjct: 121 DFVKVSKVSVEDMLYDEQDISRSMDKIEV 149
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/149 (87%), Positives = 138/149 (92%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS GQPPSLK+RD +RE DQL I PLGAGNEVGRSCVYMSYK K +LFDCGIHPAYS
Sbjct: 1 MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
D+VKVSKVSVEDML+DEQDINRSMD+IEV
Sbjct: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEV 149
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 141/149 (94%), Gaps = 2/149 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS+ SLKRR+ P+SR+GDQL + PLGAG+EVGRSCVYMS++GK ILFDCGIHPAYS
Sbjct: 1 MASSST--SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYS 58
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF+GRVFMTHATKAIYKLLLT
Sbjct: 59 GMAALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLT 118
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDIN+SMD+IEV
Sbjct: 119 DYVKVSKVSVEDMLFDEQDINKSMDKIEV 147
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 141/149 (94%), Gaps = 2/149 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS+ SLKRR+ P+SR+GDQL + PLGAG+EVGRSCVYMS++GK ILFDCGIHPAYS
Sbjct: 1 MASSS--ASLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYS 58
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF+GRVFMTHATKAIYKLLLT
Sbjct: 59 GMAALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLT 118
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDIN+SMD+IEV
Sbjct: 119 DYVKVSKVSVEDMLFDEQDINKSMDKIEV 147
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 141/149 (94%), Gaps = 2/149 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS+ SLKRR+ P+SR+GDQL + PLGAG+EVGRSCVYMS++GK ILFDCGIHPAYS
Sbjct: 1 MASSST--SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYS 58
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF+GRVFMTHATKAIYKLLLT
Sbjct: 59 GMAALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLT 118
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDIN+SMD+IEV
Sbjct: 119 DYVKVSKVSVEDMLFDEQDINKSMDKIEV 147
>gi|224104292|ref|XP_002333964.1| predicted protein [Populus trichocarpa]
gi|222839280|gb|EEE77617.1| predicted protein [Populus trichocarpa]
Length = 169
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/159 (84%), Positives = 141/159 (88%), Gaps = 11/159 (6%)
Query: 1 MASTGQPPSLKRRDVPVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MASTGQ SLKRRD PV+REG DQLT+ PLGAGNEVGRSCVYMS+KGKT+LFDCGIH AY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK----------TTFSGRVFMTH 109
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEK TTF GRVFMTH
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKDQSNMFTLYQTTFRGRVFMTH 120
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
ATKAIYKLLLTDYVKVSKVSVEDMLFDE+DINRSMD+IE
Sbjct: 121 ATKAIYKLLLTDYVKVSKVSVEDMLFDEKDINRSMDKIE 159
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/149 (87%), Positives = 137/149 (91%), Gaps = 1/149 (0%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG SLKR D ++R GDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+
Sbjct: 60 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 119
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDML+DEQDI RSMD+IEV
Sbjct: 120 DYVKVSKVSVEDMLYDEQDILRSMDKIEV 148
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 131/149 (87%), Positives = 137/149 (91%), Gaps = 1/149 (0%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG SLKR D ++R GDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+
Sbjct: 60 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 119
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDML+DEQDI RSMD+IEV
Sbjct: 120 DYVKVSKVSVEDMLYDEQDILRSMDKIEV 148
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 268 bits (684), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/141 (90%), Positives = 133/141 (94%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKR D ++REGDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF
Sbjct: 2 SLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 61
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+DYVKVSKV
Sbjct: 62 DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKV 121
Query: 129 SVEDMLFDEQDINRSMDRIEV 149
SVEDML+DEQDI RSMD+IEV
Sbjct: 122 SVEDMLYDEQDILRSMDKIEV 142
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 126/144 (87%), Positives = 135/144 (93%), Gaps = 3/144 (2%)
Query: 9 SLKRRDVPVS---REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S+KRRD+ VS RE DQL + PLGAGNEVGRSCVYMSYKGKT+LFDCGIHPAYSGMAAL
Sbjct: 3 SVKRRDLSVSGSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAAL 62
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PYFDEIDPS +DVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+D+VKV
Sbjct: 63 PYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKV 122
Query: 126 SKVSVEDMLFDEQDINRSMDRIEV 149
SKVSVEDMLFDEQDINRSMD+IEV
Sbjct: 123 SKVSVEDMLFDEQDINRSMDKIEV 146
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 121/139 (87%), Positives = 130/139 (93%)
Query: 11 KRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
+R + SRE DQL + PLGAGNEVGRSCVYMSYKGKT+LFDCGIHPAYSGMAALPYFDE
Sbjct: 8 RRENARSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDE 67
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
IDPS +DVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+D+VKVSKVSV
Sbjct: 68 IDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSV 127
Query: 131 EDMLFDEQDINRSMDRIEV 149
EDMLFDEQDINRSMD+IEV
Sbjct: 128 EDMLFDEQDINRSMDKIEV 146
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 258 bits (660), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/138 (87%), Positives = 128/138 (92%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQL I PLGAGNEVGRSCVYMS+KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 19 KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEI 78
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 79 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 138
Query: 132 DMLFDEQDINRSMDRIEV 149
DMLFDEQDI RSMD+IEV
Sbjct: 139 DMLFDEQDILRSMDKIEV 156
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 121/149 (81%), Positives = 133/149 (89%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R REGDQ+ I PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 76 MASVATAPPAGKRPTSGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 135
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+
Sbjct: 136 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 195
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDI RSMD+IEV
Sbjct: 196 DYVKVSKVSVEDMLFDEQDIIRSMDKIEV 224
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 121/138 (87%), Positives = 128/138 (92%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQL I PLGAGNEVGRSCVYMS+KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 19 KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEI 78
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 79 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 138
Query: 132 DMLFDEQDINRSMDRIEV 149
DMLFDEQDI RSMD+IEV
Sbjct: 139 DMLFDEQDILRSMDKIEV 156
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 258 bits (659), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/149 (80%), Positives = 133/149 (89%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R REGDQ+ + PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDI RSMD+IEV
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEV 161
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 258 bits (658), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/149 (80%), Positives = 133/149 (89%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R REGDQ+ + PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDI RSMD+IEV
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEV 161
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 120/149 (80%), Positives = 133/149 (89%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R REGDQ+ + PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDI RSMD+IEV
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEV 161
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 119/149 (79%), Positives = 131/149 (87%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R REGD + + PLGAG EVGRSCV+MS+KG+T+LFDCGIHPAYS
Sbjct: 1 MASVATAPPAGKRPASGEREGDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+
Sbjct: 61 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQD+ RSMD+IEV
Sbjct: 121 DYVKVSKVSVEDMLFDEQDVIRSMDKIEV 149
>gi|297739593|emb|CBI29775.3| unnamed protein product [Vitis vinifera]
Length = 184
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/149 (83%), Positives = 133/149 (89%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG P SLKR D ++R GDQ I PLGAGNEVGRSCVYMSYKGKTIL DCGIH AYS
Sbjct: 1 MASTGPPQSLKRSDSSLTRVGDQPIITPLGAGNEVGRSCVYMSYKGKTILIDCGIHRAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALP F+EIDPS IDVLL+THFHLDHAASLPYFLEKTTF+G+VFMTHA KAIYKLLL+
Sbjct: 61 GMAALPNFNEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFNGQVFMTHAMKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVS VSVEDML+DEQDI RSMD+IEV
Sbjct: 121 DYVKVSIVSVEDMLYDEQDILRSMDKIEV 149
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/138 (84%), Positives = 129/138 (93%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQ+ I PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 9 KRPASGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEI 68
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPSAIDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 69 DPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 128
Query: 132 DMLFDEQDINRSMDRIEV 149
DMLFDEQDI RSMD+IEV
Sbjct: 129 DMLFDEQDIIRSMDKIEV 146
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 251 bits (641), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/138 (84%), Positives = 128/138 (92%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQ+ + PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPSAIDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+DYVKVSKVSVE
Sbjct: 76 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDRIEV 149
DML+DE DI RSMD+IEV
Sbjct: 136 DMLYDESDIARSMDKIEV 153
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 251 bits (640), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 4/145 (2%)
Query: 9 SLKRRDV---PVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
S+K+R+ ++RE DQL + PLGAGNEVGRSCVYM+YKGKT+LFDCGIHP YSGMAA
Sbjct: 3 SVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAA 62
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK 124
LPYFDEIDPS +DVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+DYVK
Sbjct: 63 LPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVK 122
Query: 125 VSKVSVEDMLFDEQDINRSMDRIEV 149
VSKVSV+DML+DEQDINRSMD+IEV
Sbjct: 123 VSKVSVDDMLYDEQDINRSMDKIEV 147
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/138 (84%), Positives = 128/138 (92%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQ+ I PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAY+GMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYTGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPSAIDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLL+DYVKVSKVSVE
Sbjct: 76 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDRIEV 149
DMLFDE DI RSM++IEV
Sbjct: 136 DMLFDESDIARSMEKIEV 153
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 114/138 (82%), Positives = 127/138 (92%)
Query: 12 RRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R REGDQ+ I PLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTF GRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 76 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDRIEV 149
DML+DE DI RSM++IEV
Sbjct: 136 DMLYDENDIARSMEKIEV 153
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 112/140 (80%), Positives = 128/140 (91%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR+D EG+++ I+PLGAG+EVGRSC +M+YKGKTILFDCGIHP Y+GMAALPYFD
Sbjct: 2 LKRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFD 61
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
EIDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVK+SK S
Sbjct: 62 EIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKGS 121
Query: 130 VEDMLFDEQDINRSMDRIEV 149
VEDML+DEQD+ ++MD+IEV
Sbjct: 122 VEDMLYDEQDVLKTMDKIEV 141
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/141 (79%), Positives = 128/141 (90%), Gaps = 2/141 (1%)
Query: 11 KRRD--VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
KR+D VSREGD+L + PLGAGNEVGRSCVYM+YKGKT++FDCGIHP YSGMAALPYF
Sbjct: 3 KRKDPTTVVSREGDKLEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYF 62
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDP +IDVLL+THFHLDH ASLPYFLEKT F GRVFMTHATKAIYKLLL+D+VK+SKV
Sbjct: 63 DEIDPISIDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKV 122
Query: 129 SVEDMLFDEQDINRSMDRIEV 149
SV+DML+DE DI R+M++IEV
Sbjct: 123 SVDDMLYDEHDIARTMEKIEV 143
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/141 (82%), Positives = 130/141 (92%), Gaps = 2/141 (1%)
Query: 10 LKRRDVPVSREGDQLTII-PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+KRR+ V E D++ I+ PLGAGNEVGRSCVYMSYKGK+ILFDCGIH +SGM+ALPYF
Sbjct: 6 VKRRE-SVREEDDEVMIVTPLGAGNEVGRSCVYMSYKGKSILFDCGIHLGFSGMSALPYF 64
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS +DVLLITHFHLDHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+D+VKVSKV
Sbjct: 65 DEIDPSTLDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKV 124
Query: 129 SVEDMLFDEQDINRSMDRIEV 149
SVEDMLFDEQDINRSMD+IEV
Sbjct: 125 SVEDMLFDEQDINRSMDKIEV 145
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 110/141 (78%), Positives = 128/141 (90%), Gaps = 2/141 (1%)
Query: 11 KRRDVP--VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
KR+D ++REGD+L + PLGAGNEVGRSCVYM+YKGKT++FDCGIHP YSGMAALPYF
Sbjct: 3 KRKDTATVITREGDKLEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYF 62
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDP +IDVLL+THFHLDH ASLPYFLEKT F GRVFMTHATKAIYKLLL+D+VK+SKV
Sbjct: 63 DEIDPISIDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKV 122
Query: 129 SVEDMLFDEQDINRSMDRIEV 149
SV+DML+DE DI R+M++IEV
Sbjct: 123 SVDDMLYDEHDIARTMEKIEV 143
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/139 (79%), Positives = 127/139 (91%)
Query: 11 KRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
+R+D EG+++ I+PLGAG+EVGRSC +M+YKGKTILFDCGIHP Y+GMAALPYFDE
Sbjct: 10 QRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDE 69
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
IDPS IDVLL+THFHLDHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVK+SK SV
Sbjct: 70 IDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKGSV 129
Query: 131 EDMLFDEQDINRSMDRIEV 149
EDML+DEQD+ ++MD+IEV
Sbjct: 130 EDMLYDEQDVLKTMDKIEV 148
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 116/143 (81%), Gaps = 4/143 (2%)
Query: 7 PPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
PP+ ++PV+ E D L I PLGAGNEVGRSC+ + +KGKTI+ DCG+HPA+SG+AALP
Sbjct: 44 PPT----EIPVTSEEDILKITPLGAGNEVGRSCILLEFKGKTIMLDCGLHPAHSGLAALP 99
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+FD IDP ++D++LITHFH+DHAA LPYF+EKT F GRVFMTH T+AIYK L++DY+K+S
Sbjct: 100 FFDNIDPESVDLVLITHFHVDHAAGLPYFMEKTAFKGRVFMTHPTRAIYKWLVSDYIKIS 159
Query: 127 KVSVEDMLFDEQDINRSMDRIEV 149
+S +D L+ ++D+ S RIEV
Sbjct: 160 SLSPDDQLYSDKDLANSYGRIEV 182
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 110/139 (79%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DVPV + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
+DML+ E D+ SMD+IE
Sbjct: 125 ADDMLYTETDLEESMDKIE 143
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 110/139 (79%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DVPV + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
+DML+ E D+ SMD+IE
Sbjct: 125 ADDMLYTETDLEESMDKIE 143
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/131 (65%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D+L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPYFD I+P ID
Sbjct: 13 AEESDRLIIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYFDLIEPDEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT F GRVFMTHATKAIY+ LL+DYVKVS +S E ML+ +
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTNFQGRVFMTHATKAIYRWLLSDYVKVSNISTEQMLYTD 132
Query: 138 QDINRSMDRIE 148
D+ SMDRIE
Sbjct: 133 NDLENSMDRIE 143
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 106/141 (75%)
Query: 8 PSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P R + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY
Sbjct: 13 PETARMSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPY 72
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS
Sbjct: 73 IDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSN 132
Query: 128 VSVEDMLFDEQDINRSMDRIE 148
+S +DML+ E D+ SMD+IE
Sbjct: 133 ISADDMLYTETDLEESMDKIE 153
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D+ V + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADLSVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
+DML+ E D+ SMD+IE
Sbjct: 125 ADDMLYTETDLEESMDKIE 143
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 108/129 (83%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
G++L + PLGAGNEVGRS V + +KGKT+LFDCGIHPA++GMA+LP+FD I+PS ID++L
Sbjct: 36 GEKLVVTPLGAGNEVGRSAVLLQFKGKTVLFDCGIHPAFTGMASLPFFDTIEPSEIDLVL 95
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+THFHLDH +LPYF E T F GRVFMTH TKAIYKLLLTD+VKVS V V+D LF EQ++
Sbjct: 96 VTHFHLDHCGALPYFTEHTNFQGRVFMTHPTKAIYKLLLTDFVKVSDVHVDDQLFTEQNL 155
Query: 141 NRSMDRIEV 149
S+ +IE+
Sbjct: 156 LDSLKKIEL 164
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 8 PSLKRRDVPVS----REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
P L+R+ +S E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM
Sbjct: 25 PPLRRQISEMSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMD 84
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYV
Sbjct: 85 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 144
Query: 124 KVSKVSVEDMLFDEQDINRSMDRIE 148
KVS +S +DML+ E D+ SMD+IE
Sbjct: 145 KVSNISADDMLYTETDLEESMDKIE 169
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 111/143 (77%), Gaps = 4/143 (2%)
Query: 9 SLKRRD---VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S+KR+ +P + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM AL
Sbjct: 2 SVKRKAESAIP-AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL 60
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKV
Sbjct: 61 PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 120
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S +S +DML+ E D+ SMD+IE
Sbjct: 121 SNISADDMLYTETDLEESMDKIE 143
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 111/143 (77%), Gaps = 4/143 (2%)
Query: 9 SLKRRD---VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S+KR+ +P + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM AL
Sbjct: 2 SVKRKAESAIP-AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL 60
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKV
Sbjct: 61 PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 120
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S +S +DML+ E D+ SMD+IE
Sbjct: 121 SNISADDMLYTETDLEESMDKIE 143
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 111/143 (77%), Gaps = 4/143 (2%)
Query: 9 SLKRRD---VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S+KR+ +P + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM AL
Sbjct: 2 SVKRKAESAIP-AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL 60
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKV
Sbjct: 61 PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 120
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S +S +DML+ E D+ SMD+IE
Sbjct: 121 SNISADDMLYTETDLEESMDKIE 143
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 9 SLKRR-DVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S KR+ DV V + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALP
Sbjct: 2 STKRKIDVNVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
Y D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS
Sbjct: 62 YIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDRIE 148
+S ++ML+ E D+ SMD+IE
Sbjct: 122 NISADEMLYAETDLEESMDKIE 143
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 36 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 95
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 96 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 155
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 156 TDLEESMDKIE 166
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 13 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 132
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 133 TDLEESMDKIE 143
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|297265405|ref|XP_002799184.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 564
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 68 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 127
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 128 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 187
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 188 TDLEESMDKIE 198
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 43 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 102
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 103 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 162
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 163 TDLEESMDKIE 173
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 109/139 (78%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ +V V + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKSEVTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
+DML+ E D+ SM++IE
Sbjct: 125 ADDMLYTETDLEESMEKIE 143
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 112/148 (75%), Gaps = 5/148 (3%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA+ +P + VP + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP
Sbjct: 1 MAAKRKPEAT----VP-AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLE 55
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+
Sbjct: 56 GMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLS 115
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIE 148
DYVKVS +S +DML+ E D+ SM++IE
Sbjct: 116 DYVKVSNISADDMLYTETDLEDSMEKIE 143
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 3 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S ++ML+ E
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADEMLYAE 122
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 123 TDLEESMDKIE 133
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 109/142 (76%), Gaps = 2/142 (1%)
Query: 9 SLKRRDVPV--SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ V E D L I PLG+G EVGRSC + +KGK ++ DCGIHP +G+ +LP
Sbjct: 4 SVKRKADSVIPPEESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLP 63
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+ DEID + ID+LL++HFHLDH SLP+ LEKTTF GRVFMTHATKAIY+ LL+DYVKVS
Sbjct: 64 FLDEIDTAEIDLLLVSHFHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRWLLSDYVKVS 123
Query: 127 KVSVEDMLFDEQDINRSMDRIE 148
++ EDMLF E D+ +SMD+IE
Sbjct: 124 NIAAEDMLFTESDLEKSMDKIE 145
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 103/131 (78%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM AL Y D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALAYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 109/141 (77%), Gaps = 1/141 (0%)
Query: 9 SLKRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
S +R D V + E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY
Sbjct: 3 SKRRVDAMVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPY 62
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KVS
Sbjct: 63 IDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYIKVSN 122
Query: 128 VSVEDMLFDEQDINRSMDRIE 148
+S ++ML+ E D+ SM++IE
Sbjct: 123 ISADEMLYTETDLEDSMEKIE 143
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 103/131 (78%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
+ SMD+IE
Sbjct: 126 TVLEESMDKIE 136
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 103/131 (78%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S E D L I PLGAG EVGRSC+++ +KGK +L D GIHP Y+G+ +LP+ DEIDP +D
Sbjct: 4 SEESDLLRITPLGAGQEVGRSCIFIEFKGKKLLLDLGIHPGYNGLDSLPFIDEIDPGEVD 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH LP+FLEKT F GRVFMTH TKAIY+ LL DY+KVS +S + ML+ E
Sbjct: 64 LLLISHFHLDHCGGLPWFLEKTHFKGRVFMTHPTKAIYRWLLADYIKVSNISADQMLYTE 123
Query: 138 QDINRSMDRIE 148
+D+ +SMD+IE
Sbjct: 124 KDLEKSMDKIE 134
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/134 (63%), Positives = 106/134 (79%), Gaps = 1/134 (0%)
Query: 15 VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
VP+ E DQLTI PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D I+
Sbjct: 12 VPME-ESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEAD 70
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
+D+LLI+HFHLDH+ +LP+FL KT+F GRVFMTHATKAIY+ L++DY+KVS +S E ML
Sbjct: 71 EVDLLLISHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNISTEQML 130
Query: 135 FDEQDINRSMDRIE 148
+ E D+ SMDRIE
Sbjct: 131 YTESDLEGSMDRIE 144
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/129 (67%), Positives = 109/129 (84%), Gaps = 4/129 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L I PLGAGNEVGRSCV ++YK KTI+FDCG+HPAYSG+A+LP+FDE+DP +ID++LI
Sbjct: 22 ETLQITPLGAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDPRSIDLILI 81
Query: 82 THFHLDHAASLPYFLEKTTF--SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
THFHLDH A+LPY LEKT + RVFMTH TKAIYK LL+D+V+VS S ED+L+ EQD
Sbjct: 82 THFHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSDFVRVS--SNEDVLYSEQD 139
Query: 140 INRSMDRIE 148
++R+M RIE
Sbjct: 140 LSRTMKRIE 148
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 113/136 (83%), Gaps = 5/136 (3%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI----DP 73
+ E D L I+P+G+G+EVGRSCV + YKGKTI+FDCG+HPAYSG+++LP+FD I +
Sbjct: 21 AEEDDILQIMPIGSGSEVGRSCVLLKYKGKTIMFDCGVHPAYSGLSSLPFFDSIELYCNI 80
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-ED 132
ID+LL++HFHLDHAA++PYF++KT F G+V+MTH TK IYK+LL+DYVKVS +SV ED
Sbjct: 81 DDIDLLLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKVLLSDYVKVSNISVAED 140
Query: 133 MLFDEQDINRSMDRIE 148
M FDEQD+N S+ +IE
Sbjct: 141 MPFDEQDLNASLPKIE 156
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/139 (62%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+R D V + E D L+I PLGAG EVGRSC + +KGK I+ D GIHP +G+ ALP+ D
Sbjct: 5 RRMDAQVPAEESDLLSIRPLGAGQEVGRSCHMLEFKGKKIMLDTGIHPGLNGLNALPFLD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP ID+LLI+HFHLDH LPYFL KT+F GRVFMTHATKAIYK LL+DY+KVS +S
Sbjct: 65 LIDPEEIDLLLISHFHLDHCGGLPYFLTKTSFRGRVFMTHATKAIYKWLLSDYIKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
EDML+ E D++ SMD+IE
Sbjct: 125 SEDMLYTENDLSASMDKIE 143
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 104/135 (77%), Gaps = 4/135 (2%)
Query: 18 SREGDQLTIIPL----GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
+ E DQL I PL GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP
Sbjct: 6 AEESDQLLIRPLFRGGGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP 65
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DM
Sbjct: 66 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM 125
Query: 134 LFDEQDINRSMDRIE 148
L+ E D+ SMD+IE
Sbjct: 126 LYTETDLEESMDKIE 140
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 102/131 (77%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E QL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP G ALPY D IDP+ ID
Sbjct: 6 AEESVQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGTDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
D PV D L I LGAGNEVGRSC + YKGKT++ D G+HPAY+G++ALP+FDE D
Sbjct: 9 EDAPVD-PSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFD 67
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED
Sbjct: 68 LSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMED 127
Query: 133 MLFDEQDINRSMDRIEVC 150
L+DE+D+ + DRIE
Sbjct: 128 QLYDEKDLLAAFDRIEAV 145
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DV V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 4 RKNDVQVPAEESDLLVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 63
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+ ID+LLI+HFHLDH +LP+FL+KTTF GR FMTHATKAIY+ LL+DY+KVS +S
Sbjct: 64 LIEADQIDLLLISHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLSDYIKVSNIS 123
Query: 130 VEDMLFDEQDINRSMDRIEV 149
+ ML+ E D+ SM++IEV
Sbjct: 124 TDQMLYTEADLEASMEKIEV 143
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 103/131 (78%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+ D LTI PLGAG EVGRSC+ + +K K I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 58 EDSDLLTIRPLGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIESDEIDL 117
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
LLITHFHLDH +LP+FLEKTTF GRVFMT ATKAIY+ LL+DY+KVS +S + ML+ E+
Sbjct: 118 LLITHFHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIKVSNISSDHMLYTEK 177
Query: 139 DINRSMDRIEV 149
D+ +SMD+IE+
Sbjct: 178 DLEKSMDKIEI 188
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
K+ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 5 KKNDAQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 65 LVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
E ML+ E D+ SMD+IE
Sbjct: 125 TEQMLYTESDLETSMDKIE 143
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/144 (58%), Positives = 108/144 (75%), Gaps = 4/144 (2%)
Query: 9 SLKRR---DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S KR+ VP + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM AL
Sbjct: 1066 SAKRKSDTQVP-AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 1124
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
P+ D ++ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KV
Sbjct: 1125 PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV 1184
Query: 126 SKVSVEDMLFDEQDINRSMDRIEV 149
S ++ E ML+ E D+ SMD+IE
Sbjct: 1185 SNIATEQMLYTESDLETSMDKIET 1208
>gi|340386286|ref|XP_003391639.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Amphimedon queenslandica]
Length = 181
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 103/131 (78%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+ D LTI PLGAG EVGRSC+ + +K K I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 15 EDSDLLTIRPLGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIESDEIDL 74
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
LLITHFHLDH +LP+FLEKTTF GRVFMT ATKAIY+ LL+DY+KVS +S + ML+ E+
Sbjct: 75 LLITHFHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIKVSNISSDHMLYTEK 134
Query: 139 DINRSMDRIEV 149
D+ +SMD+IE+
Sbjct: 135 DLEKSMDKIEI 145
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/142 (60%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L I P+G+GNEVGRSCV + YKGK I+FDCG+HPAYSG+ +LP+FD
Sbjct: 17 LKRPLKGGTEDDDILEITPIGSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFD 76
Query: 70 --EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
E D ID+LL++HFHLDHAA++PYF+ KT FSGRVFMTH TKAIY +LL D+VKV+
Sbjct: 77 SVESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLADFVKVTT 136
Query: 128 VSV-EDMLFDEQDINRSMDRIE 148
++ +DMLFDE+D+N S+++IE
Sbjct: 137 ITRDDDMLFDEKDLNSSLEKIE 158
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 108/143 (75%), Gaps = 4/143 (2%)
Query: 9 SLKRR---DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S KR+ VP + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM AL
Sbjct: 2 SAKRKPETQVP-AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 60
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
P+ D ++ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KV
Sbjct: 61 PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV 120
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S ++ E ML+ E D+ SMD+IE
Sbjct: 121 SNIATEQMLYTESDLETSMDKIE 143
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/143 (58%), Positives = 108/143 (75%), Gaps = 4/143 (2%)
Query: 9 SLKRR---DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S KR+ VP + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM AL
Sbjct: 2 STKRKPDAQVP-AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 60
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
P+ D ++ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KV
Sbjct: 61 PFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV 120
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S ++ E ML+ E D+ SMD+IE
Sbjct: 121 SNIATEQMLYTESDLETSMDKIE 143
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 4 RKSDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPGLSGMDALPFVD 63
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 64 LVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 123
Query: 130 VEDMLFDEQDINRSMDRIE 148
E ML+ E D+ SMD+IE
Sbjct: 124 TEQMLYTESDLETSMDKIE 142
>gi|390365684|ref|XP_003730872.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 216
Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/148 (57%), Positives = 107/148 (72%), Gaps = 5/148 (3%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA+ +P + +P E D+L + PLGAG EVGRSC+ + +KGK I+ DCGIHP
Sbjct: 1 MAAKRKPDA----QIP-EEESDRLIVRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGRE 55
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GM +LPYFD IDP ID+LL++HFHLDH LPYFL+ T F GRVFMTHA+KAIY+ L+
Sbjct: 56 GMDSLPYFDLIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQFRGRVFMTHASKAIYRWNLS 115
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIE 148
DYVKVS +S E ML+ + D+ SMDRIE
Sbjct: 116 DYVKVSNLSAERMLYTDADLQASMDRIE 143
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 103/147 (70%)
Query: 2 ASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG 61
A G P K + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SG
Sbjct: 3 APGGDSPKRKADTQVPAEESDLLLIRPLGAGQEVGRSCIILEFKGKRIMLDCGIHPGMSG 62
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
+ ALPY D I+ ID+LL++HFHLDH +LP+FL+KTTF GR FMTHATKAIY+ LL D
Sbjct: 63 LDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLAD 122
Query: 122 YVKVSKVSVEDMLFDEQDINRSMDRIE 148
Y+KVS + E ML+ E D+ SM++IE
Sbjct: 123 YIKVSNIGTEQMLYSETDLEASMEKIE 149
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 100/128 (78%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+LTI PLGAG EVGRSC+ M +KGK I+ DCGIHP G+ ALP+ D I+ + ID+LL
Sbjct: 19 NDKLTIKPLGAGQEVGRSCIVMEFKGKKIMLDCGIHPGLQGLDALPFVDLIEANEIDLLL 78
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
ITHFHLDH+ +LP+FL KT F G+ +MTHATKAIY+ LL+DY+KVS + E ML+ E D+
Sbjct: 79 ITHFHLDHSGALPWFLLKTKFKGKCYMTHATKAIYRWLLSDYIKVSNIGTEQMLYTEADL 138
Query: 141 NRSMDRIE 148
+SMDRIE
Sbjct: 139 EKSMDRIE 146
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Query: 11 KRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
K+ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 5 KKSDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 65 LVEADEIDLLLISHFHLDHCGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 124
Query: 130 VEDMLFDEQDINRSMDRIE 148
E ML+ E D+ SMD+IE
Sbjct: 125 TEQMLYTESDLETSMDKIE 143
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 96/125 (76%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L I PLGAG EVGRSC + +K K I+ DCGIHP SG+A LPY D +P ID+LL+TH
Sbjct: 17 LKITPLGAGQEVGRSCHLLEFKEKKIMLDCGIHPGISGLAGLPYIDFTEPEKIDLLLVTH 76
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
FHLDHA LP+FL+KTTF GRVFMTHATKAIY+ LL+DY+KVS +S ED L+ E D+ S
Sbjct: 77 FHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKVSNISTEDQLYTEADLEDS 136
Query: 144 MDRIE 148
M RIE
Sbjct: 137 MARIE 141
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L I P+G+G+EVGRSCV + YKGK ++FDCG+HPAYSG+ +LP+FD
Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81
Query: 70 EI--DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
I D ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS
Sbjct: 82 SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141
Query: 128 VSV-EDMLFDEQDINRSMDRIE 148
++ +DMLFD+ D++RS+++IE
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIE 163
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 101/131 (77%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SG+ ALP+ D I+ ID
Sbjct: 16 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGLDALPFVDIIEADEID 75
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT F GR FMTHATKAIY+ LL+DY+KVS ++ E ML+ E
Sbjct: 76 LLLISHFHLDHCGALPWFLQKTNFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTE 135
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 136 ADLESSMDKIE 146
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 99/129 (76%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLG+G EVGRSC + +KGK I+ DCGIHP +G A+LP+ D ++ +D+L
Sbjct: 13 ESDNLLIRPLGSGQEVGRSCHLLEFKGKKIMLDCGIHPGLNGFASLPFLDLVEVEEVDLL 72
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
LI+HFHLDH +LPYFLEKT F GR FMTHA+KAIY+ LL+DYVKVS ++ EDML+ E D
Sbjct: 73 LISHFHLDHCGALPYFLEKTQFKGRCFMTHASKAIYRWLLSDYVKVSNIATEDMLYTESD 132
Query: 140 INRSMDRIE 148
I SMD+IE
Sbjct: 133 IENSMDKIE 141
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 99/131 (75%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SG+ ALPY D I+ ID
Sbjct: 62 AEESDLLLIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPGMSGLDALPYVDLIEADEID 121
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LL++HFHLDH +LP+FL+KTTF GR FMTHATKAIY+ LL DY+KVS + E ML+ E
Sbjct: 122 LLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADYIKVSNIGTEQMLYSE 181
Query: 138 QDINRSMDRIE 148
D+ SM++IE
Sbjct: 182 ADLESSMEKIE 192
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 96/119 (80%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 60
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 61 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 119
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 103/129 (79%), Gaps = 4/129 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLG+GNEVGRS + M YKGKTIL D GIHPAY+G+A+LP+FDE+DP++IDVL
Sbjct: 3 ENDLLKITPLGSGNEVGRSSILMEYKGKTILLDAGIHPAYNGLASLPFFDEMDPASIDVL 62
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
L+THFH+DHAAS+PY + K GRVFMTH TKAI+K LL+DY++VS + ED L+ E+D
Sbjct: 63 LVTHFHVDHAASVPYLMGK----GRVFMTHPTKAIFKWLLSDYLRVSHIGEEDQLYTEED 118
Query: 140 INRSMDRIE 148
+ S RIE
Sbjct: 119 LLNSFHRIE 127
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 96/119 (80%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 5 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 64
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 65 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 123
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/130 (57%), Positives = 101/130 (77%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
++ GD L I PLGAG EVGRSC+Y+ KGK I+ DCGIHP G+ ALPYFD I+P +D
Sbjct: 21 TQSGDFLEITPLGAGCEVGRSCIYLECKGKKIMLDCGIHPGKDGVQALPYFDVINPKELD 80
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++LITHFH+DH A LPYFLEKT F G+V+MTH TK+IY ++ D+VKVS +++++ LFDE
Sbjct: 81 LILITHFHVDHCAGLPYFLEKTDFKGKVYMTHPTKSIYNYVMQDFVKVSNIAIDEKLFDE 140
Query: 138 QDINRSMDRI 147
D+ ++D+I
Sbjct: 141 NDLKNTLDKI 150
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 92 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 151
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
+LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 152 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 211
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D I+ +D
Sbjct: 13 AEENDLLLIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVD 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+L I+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ +L+DY+KVS +S E ML+ E
Sbjct: 73 LLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTEQMLYTE 132
Query: 138 QDINRSMDRIE 148
D+ SM++IE
Sbjct: 133 ADLEASMEKIE 143
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 100/131 (76%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S E D L I PLGAG EVGRSC+ + +KGK ++ DCGIHP SG+ ALP+ D I+ ID
Sbjct: 14 SEENDLLRIRPLGAGQEVGRSCIMLEFKGKNVMLDCGIHPGLSGLDALPFVDLIEADEID 73
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LL+THFHLDH+ +LP+FL KT F GR FMTHATKAIY+ LL+DY+KVS +S E ML+ +
Sbjct: 74 LLLVTHFHLDHSGALPWFLLKTKFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTD 133
Query: 138 QDINRSMDRIE 148
D+ SM++IE
Sbjct: 134 HDLEESMEKIE 144
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 77/120 (64%), Positives = 96/120 (80%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 237 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 296
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
+LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 297 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEDSMDKIET 356
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 178 bits (452), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 100/132 (75%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E D + I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D ID I
Sbjct: 13 LKEESDLMVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQI 72
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+L I+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ +L+DY+KVS +S + ML+
Sbjct: 73 DLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTDQMLYT 132
Query: 137 EQDINRSMDRIE 148
E D+ SM++IE
Sbjct: 133 EADLEASMEKIE 144
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 102/131 (77%), Gaps = 3/131 (2%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLI--RGAGQEVGRSCIILEFKGRKIM-DCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 122
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 123 TDLEESMDKIE 133
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
Query: 5 GQPPSLKRRDVPV-SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
G + + DV V + D L+I PLGAG EVGRSC + YK KTI+ DCGIHP G+
Sbjct: 3 GSGSNKRSADVSVIGEDSDLLSIKPLGAGQEVGRSCHIIQYKNKTIMLDCGIHPGRHGVE 62
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV 123
ALPY D I ID+LLI+HFHLDH +LP+FLE+T+F GRVFMTHATKAIY+ LL DYV
Sbjct: 63 ALPYTDIIAEDQIDLLLISHFHLDHCGALPWFLERTSFKGRVFMTHATKAIYRWLLADYV 122
Query: 124 KVSKVSVEDMLFDEQDINRSMDRIE 148
KVS +S + ML+ E+D+ +SM +IE
Sbjct: 123 KVSNISTDQMLYTEKDLEKSMTKIE 147
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 100/132 (75%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E D + I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D ID I
Sbjct: 15 LKEESDLMVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQI 74
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+L I+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ +L+DY+KVS +S + ML+
Sbjct: 75 DLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTDQMLYT 134
Query: 137 EQDINRSMDRIE 148
E D+ SM++IE
Sbjct: 135 EADLEASMEKIE 146
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 5 GQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
Q S VP E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM A
Sbjct: 2 AQAQSNNDTRVP-DEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDA 60
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK 124
LPY D I+ ID+L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K
Sbjct: 61 LPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIK 120
Query: 125 VSKVSVEDMLFDEQDINRSMDRIE 148
+S +S E ML+ E D+ SM++IE
Sbjct: 121 ISNISTEQMLYTEADLEASMEKIE 144
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 13 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 72
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 73 LFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 132
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 133 DLEASMEKIE 142
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 15 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 74
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E
Sbjct: 75 LFISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEA 134
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 135 DLEASMEKIE 144
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 104/143 (72%), Gaps = 3/143 (2%)
Query: 6 QPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
QP S R VP E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM AL
Sbjct: 3 QPTSDAR--VP-DEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 59
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PY D I+ ID+L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+
Sbjct: 60 PYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI 119
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S +S E ML+ + D+ SM++IE
Sbjct: 120 SNISTEQMLYTDADLEASMEKIE 142
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 103/126 (81%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP+FD ++ ID+LLITH
Sbjct: 17 MRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLITH 76
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
FH+DH A+LP+F EKT F GRVFMTH TKA+ +++L D+++VS +SV+D ++D++D+N
Sbjct: 77 FHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDLNNC 136
Query: 144 MDRIEV 149
+ ++E+
Sbjct: 137 VSKVEI 142
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 100/131 (76%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D I+ +D
Sbjct: 13 AEENDLLLIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVD 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+L I+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ +L+DY+KVS +S + ML+ E
Sbjct: 73 LLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTDQMLYTE 132
Query: 138 QDINRSMDRIE 148
D+ SM++IE
Sbjct: 133 ADLEASMEKIE 143
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 103/126 (81%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP+FD ++ ID+LLITH
Sbjct: 17 MRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLITH 76
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
FH+DH A+LP+F EKT F GRVFMTH TKA+ +++L D+++VS +SV+D ++D++D+N
Sbjct: 77 FHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDLNNC 136
Query: 144 MDRIEV 149
+ ++E+
Sbjct: 137 VSKVEI 142
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 111/143 (77%), Gaps = 3/143 (2%)
Query: 10 LKRRDVPVSREGDQ---LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
+ +R V + + D+ + I+PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP
Sbjct: 1 MSKRKVSEAGDSDERHIMRIMPLGAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLP 60
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+FD ++ ID+LL+THFH+DH A+LP+F EKT F GRVFMTH TKA+ +++L D+++VS
Sbjct: 61 FFDGVEAEEIDLLLVTHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVS 120
Query: 127 KVSVEDMLFDEQDINRSMDRIEV 149
+SV+D ++D++D+N + ++E+
Sbjct: 121 NISVDDQIYDDKDLNNCVAKVEI 143
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 95/119 (79%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 60
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP+FL+KT+F GR FMTHATKAIYK LL+D VKVS +S +DML+ E D+ SMD+IE
Sbjct: 61 GALPWFLQKTSFKGRTFMTHATKAIYKWLLSDCVKVSNISADDMLYTETDLEESMDKIE 119
>gi|440795786|gb|ELR16902.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 134
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 104/129 (80%), Gaps = 1/129 (0%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA+ ++ +V + EGD L I+P+GAG+EVGRSC+ + +KGK I+ DCGIHPAY+
Sbjct: 1 MANGSAGLGKRKAEVTLEEEGDILEIMPIGAGSEVGRSCILLKFKGKHIMLDCGIHPAYT 60
Query: 61 GMAALPYFDEID-PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLL 119
G+AALPYFD ID P+ ID+LL++HFHLDH ASLPYF+EK+TF GRV+MTH TKAIYK+LL
Sbjct: 61 GLAALPYFDMIDDPATIDLLLVSHFHLDHCASLPYFMEKSTFKGRVYMTHPTKAIYKMLL 120
Query: 120 TDYVKVSKV 128
TD+VKV V
Sbjct: 121 TDFVKVRHV 129
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 98/130 (75%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 15 EESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDL 74
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
L I+HFHLDH +LP+FL KT+F GR FMTHATKAIY+ +L+DY+K+S +S + ML+ E
Sbjct: 75 LFISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISNISTDQMLYTEA 134
Query: 139 DINRSMDRIE 148
D+ SM++IE
Sbjct: 135 DLEASMEKIE 144
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 105/136 (77%), Gaps = 2/136 (1%)
Query: 15 VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
+P + + D L+IIPLGAG+EVGRSC+ + +K KTILFDCG+HPAYSG+AALP+FDEIDPS
Sbjct: 1 MPPATDDDTLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPS 60
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
IDV+LITHFHLDH A LPY + +T + R+ MTH TKA+Y+ L+ D+V+V
Sbjct: 61 EIDVILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAG 120
Query: 133 MLFDEQDINRSMDRIE 148
+++ E D+N++M RIE
Sbjct: 121 IIYTESDLNQTMARIE 136
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 103/122 (84%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I+PLGAG+EVGRSCV ++G T++FDCG+HPAY+G+++LP+FD IDP+ +DV+L+THFH
Sbjct: 12 ILPLGAGSEVGRSCVVTKFQGVTVMFDCGVHPAYTGISSLPFFDLIDPTEVDVILVTHFH 71
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDHA +LPYF E++ F G+V+MTH T+AI++ LL DYV+VS VS E+ LF E+++++ D
Sbjct: 72 LDHAGALPYFTERSGFKGKVYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKELSQCYD 131
Query: 146 RI 147
RI
Sbjct: 132 RI 133
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/138 (57%), Positives = 103/138 (74%), Gaps = 8/138 (5%)
Query: 20 EGDQLTIIPL--------GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
E D+L I PL GAG EVGRSC+ + +KGK+IL DCGIHP +G+ ALP+ D I
Sbjct: 8 EDDELIIKPLYEFQCKVLGAGQEVGRSCILIQFKGKSILLDCGIHPGLNGVDALPFVDTI 67
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D+LL+THFHLDH LP+FLEKTTF GR FMTHATKAIY ++L+DYVKVS + ++
Sbjct: 68 DCEKVDLLLVTHFHLDHCGGLPWFLEKTTFRGRCFMTHATKAIYPIILSDYVKVSNIGLD 127
Query: 132 DMLFDEQDINRSMDRIEV 149
ML+ E ++ +SMD+IE+
Sbjct: 128 QMLYSEDELEKSMDKIEL 145
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 104/143 (72%), Gaps = 3/143 (2%)
Query: 6 QPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
QP + R VP E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM AL
Sbjct: 3 QPGNDAR--VP-DEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL 59
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
PY D I+ ID+L I+HFH+DH +LP+FL KT+F GR FMTHATKAIY+ +L+D++K+
Sbjct: 60 PYVDLIEADEIDLLFISHFHIDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDFIKI 119
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S +S + ML+ E D+ SM++IE
Sbjct: 120 SNISTDQMLYTEADLEASMEKIE 142
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 110/152 (72%), Gaps = 6/152 (3%)
Query: 4 TGQP----PSLKRR-DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA 58
TG P LKR V V+ + D L I+PLGAG+EVGRSCV SYK KT++FDCG+HP
Sbjct: 2 TGGPIEVSAGLKRAISVDVTNKDDMLEIMPLGAGSEVGRSCVLASYKNKTVMFDCGVHPG 61
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL 118
Y+G+A+LPYFDE+D S +D +LITHFHLDH A++P+ + +T F GR+ MTH TKAI+ +L
Sbjct: 62 YAGIASLPYFDEVDLSTVDAMLITHFHLDHCAAVPFVVGRTNFKGRILMTHPTKAIFAML 121
Query: 119 LTDYVKVSKVS-VEDMLFDEQDINRSMDRIEV 149
+ D+VK++K + LF E+D+ M RIEV
Sbjct: 122 MNDFVKLNKQGDNSEALFGEKDVQECMRRIEV 153
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 102/122 (83%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I+PLGAG+EVGRSCV ++G T++FDCG+HPAY+G+++LP+FD IDP+ IDV+L+THFH
Sbjct: 12 ILPLGAGSEVGRSCVVTKFRGVTVMFDCGVHPAYTGVSSLPFFDLIDPAEIDVILVTHFH 71
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDHA +LPYF E++ F G+++MTH T+AI++ LL DYV+VS VS E+ LF E+++ + D
Sbjct: 72 LDHAGALPYFTERSGFKGKIYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKELAQCYD 131
Query: 146 RI 147
+I
Sbjct: 132 KI 133
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 8/151 (5%)
Query: 2 ASTGQPPSLKRRDVPVSREGDQ---LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA 58
A TGQ +R PV+ D L+I+PLGAG EVGRSC ++YKG TI+ DCG HPA
Sbjct: 4 AVTGQ-----KRAAPVTERDDTEDILSIMPLGAGQEVGRSCHIITYKGFTIMLDCGTHPA 58
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL 118
SG+A LPY DE+D S +D +THFH+DH +LP+ L KT F GRVFMTHATKA+Y+ +
Sbjct: 59 KSGLAQLPYVDEVDLSQVDFCFVTHFHVDHCGALPWLLSKTPFKGRVFMTHATKAVYQWM 118
Query: 119 LTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
LTDYV+++ + ++ LF ++DI +M RIE
Sbjct: 119 LTDYVRINATTDDNQLFSDKDIENTMKRIET 149
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 100/129 (77%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLGAG+EVGRSCV +YKGK+++FDCG+HP Y+G+A+LPYFDE+D S +D LL+
Sbjct: 16 DMLRITPLGAGSEVGRSCVMATYKGKSVMFDCGVHPGYAGIASLPYFDEVDLSTVDALLV 75
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH A++P+ + T F GR+ MTH TKAI+ +L+TD+VK+ K + + LF EQD+
Sbjct: 76 THFHLDHCAAVPFLVGHTNFKGRILMTHPTKAIFNMLMTDFVKLQKNNDSEALFTEQDLK 135
Query: 142 RSMDRIEVC 150
++ IEV
Sbjct: 136 AAIAMIEVV 144
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/132 (57%), Positives = 104/132 (78%), Gaps = 1/132 (0%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
EG+ L IIPLGAG+EVGRSCV +++GKT++FDCGIHP +SG+A+LPY D++D SA+D L
Sbjct: 12 EGEMLEIIPLGAGSEVGRSCVVATFRGKTLMFDCGIHPGFSGIASLPYLDDVDLSAVDAL 71
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-SVEDMLFDEQ 138
L+THFHLDH A++P+ + +T F GR+FMTH TKAIY +L+ D+V++ K E+ LF +
Sbjct: 72 LVTHFHLDHCAAVPFLVGRTDFRGRIFMTHPTKAIYHMLMQDFVRLMKQGGGEEPLFTDA 131
Query: 139 DINRSMDRIEVC 150
D+ SM RIEV
Sbjct: 132 DLEASMKRIEVV 143
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 92/119 (77%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KGK I+ D GIHP SGM ALPY D I+P ID+LL++HFHLDHA
Sbjct: 6 GAGQEVGRSCIMLEFKGKKIMLDIGIHPGMSGMDALPYTDAIEPEEIDLLLVSHFHLDHA 65
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
LP+FLEKT F GR FMTHA+KAIY+ LL+DYVKVS ++ E L+ + DI SMD+IE
Sbjct: 66 GGLPWFLEKTGFKGRCFMTHASKAIYRWLLSDYVKVSNIATEQQLYQDSDIEASMDKIE 124
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 104/143 (72%), Gaps = 8/143 (5%)
Query: 8 PSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
PS ++ D E D + + PLGAG EVGRSC + +KGKTI+FDCG+HPAYSG AALP+
Sbjct: 26 PSKRKADGDPPLESDLMILTPLGAGQEVGRSCFVLQFKGKTIMFDCGLHPAYSGQAALPF 85
Query: 68 FDEIDPS--AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
FD DP +IDVLL+TH A +PY + KT F GRVFMTH TKAIYK ++ D+++V
Sbjct: 86 FDSFDPGLDSIDVLLVTH------AGVPYIMTKTNFKGRVFMTHPTKAIYKWMVADFIRV 139
Query: 126 SKVSVEDMLFDEQDINRSMDRIE 148
S VS ++MLF+E+DI+ +M RIE
Sbjct: 140 SNVSADEMLFNERDIDNTMARIE 162
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 93/124 (75%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IIPLGAG+EVGRSC+ Y+ KT++FDCGIHPA+ GM +LP DEID +DV LITHFH
Sbjct: 1 IIPLGAGSEVGRSCIIFKYQDKTVMFDCGIHPAFKGMDSLPLLDEIDIDTVDVALITHFH 60
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH A++PY L KT F GR+FMTH TKAIY LL D K SK S E+ LF+E D+ SM
Sbjct: 61 LDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKGSKHSSEEALFNEDDLEASMQ 120
Query: 146 RIEV 149
RIEV
Sbjct: 121 RIEV 124
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 98/125 (78%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IIPLGAG+EVGRSC+ + Y+ KT++FDCGIHPA+ GM +LP D+ID + +DV LITHFH
Sbjct: 26 IIPLGAGSEVGRSCIILKYQDKTVMFDCGIHPAFKGMDSLPLLDDIDIATVDVALITHFH 85
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH A++PY L KT F GR+FMTH TKAIY LL D K +K S E+ LF+E+D++ SM+
Sbjct: 86 LDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKGAKHSSEEALFNEEDLDASME 145
Query: 146 RIEVC 150
+IEV
Sbjct: 146 QIEVV 150
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L LG GNEVGRSC + YKGKTI+ D G+HPAY G+A+LP++DE D S +D+LLI+H
Sbjct: 9 LRFFSLGGGNEVGRSCHILQYKGKTIMLDAGVHPAYQGLASLPFYDEFDLSTVDILLISH 68
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDEQ 138
FHLDHAASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + +D L+ ++
Sbjct: 69 FHLDHAASLPYVMQRTNFNGRVFMTHPTKAIYRWLLKDFVRVTSIGGSPNEKDDNLYTDE 128
Query: 139 DINRSMDRIE 148
D++ S DRIE
Sbjct: 129 DLSESFDRIE 138
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 102/137 (74%), Gaps = 9/137 (6%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + I PLG+G EVGRSC ++++G T+L DCGIHP Y GMA LP+FD +DP ++DVLL+
Sbjct: 3 DTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDPESVDVLLV 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV---------SKVSVED 132
THFHLDHAASLPYF E+T F GRVFMTH TKA+ +LLL DY+++ +++ ED
Sbjct: 63 THFHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRLLLGDYLRLMAVKHGSSGGELNPED 122
Query: 133 MLFDEQDINRSMDRIEV 149
+L+ E ++ +D+IE+
Sbjct: 123 VLYTEAELQSCVDKIEL 139
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DTLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDRIEV 149
D+ +SM++IEV
Sbjct: 131 DLEKSMEKIEV 141
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DSLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDRIEV 149
D+ +SM++IEV
Sbjct: 131 DLEKSMEKIEV 141
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 97/134 (72%), Gaps = 7/134 (5%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L LG NEVGRSC + YKGKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI
Sbjct: 12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLI 71
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDML 134
+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + S D L
Sbjct: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNL 131
Query: 135 FDEQDINRSMDRIE 148
+ ++D+ S DRIE
Sbjct: 132 YSDEDLAESFDRIE 145
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/138 (55%), Positives = 99/138 (71%), Gaps = 10/138 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D +TI PLG+G EVGRSC ++++ TIL DCGIHP Y GMA LP+FD +DP +DVLLI
Sbjct: 3 DIMTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDPEQVDVLLI 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV----------SKVSVE 131
THFHLDHAASLPYF E+T F GR+FMTH TKA+ +LLL DY+K+ K +
Sbjct: 63 THFHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRLLLGDYLKLMMMKKGSGGADKDDNQ 122
Query: 132 DMLFDEQDINRSMDRIEV 149
D+L+ E D+ +D+IE+
Sbjct: 123 DVLYTEADLQSCVDKIEL 140
>gi|393912283|gb|EJD76667.1| hypothetical protein LOAG_16429 [Loa loa]
Length = 247
Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DSLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDRIEV 149
D+ +SM++IEV
Sbjct: 131 DLEKSMEKIEV 141
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+S E D LT+ PLGAG EVGRSC+ + +KGK IL D GIHP +G+ ALP+ D+ID I
Sbjct: 1 MSEEEDILTMKPLGAGQEVGRSCMIIEFKGKKILLDMGIHPGMNGVDALPFVDQIDADEI 60
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--SVEDML 134
D+LL++HFHLDH +LP+FL+KTTF GR FMTHATKAIY+ LL D +KVS + + + L
Sbjct: 61 DLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADCIKVSNIGSTSSNNL 120
Query: 135 FDEQDINRSMDRIEV 149
+ E D+ SMD+IEV
Sbjct: 121 YTEADLEASMDKIEV 135
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 101/135 (74%), Gaps = 2/135 (1%)
Query: 17 VSREGDQLT--IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
V R D L IIPLGAG EVGRSCV + Y GKT++FDCG+HP +SG +LPYFD ID
Sbjct: 2 VKRGADTLVAKIIPLGAGQEVGRSCVILKYMGKTVMFDCGVHPGFSGEQSLPYFDSIDLD 61
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
++D++L+THFHLDH A++PY + KT F GR+FMTH TKAI+ +LL D VKVS+ + + L
Sbjct: 62 SVDLMLVTHFHLDHCAAVPYVVGKTVFKGRIFMTHPTKAIFGMLLKDSVKVSRGATDAGL 121
Query: 135 FDEQDINRSMDRIEV 149
+ E+D+ +++R E+
Sbjct: 122 YSEKDVEAALERTEL 136
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LT PLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 20 DSLTFTPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 79
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH ++P+ LEKT F GR FMTHATKAIY++L+ DY+KVSK S +L+ E+
Sbjct: 80 THFHLDHCGAVPWLLEKTAFRGRCFMTHATKAIYRMLIGDYLKVSKYGGGSDNRLLYTEE 139
Query: 139 DINRSMDRIEV 149
D+ +SM++IEV
Sbjct: 140 DLEKSMEKIEV 150
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 96/128 (75%), Gaps = 6/128 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKTI+ D G+HPAY GMA+LP++DE D S IDVLLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTIMLDAGVHPAYQGMASLPFYDEFDLSTIDVLLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINR 142
AASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + V +D ++ ++D+
Sbjct: 74 AASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGVNSTIGNDDNIYTDEDLAE 133
Query: 143 SMDRIEVC 150
S D+IE
Sbjct: 134 SFDKIETV 141
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
GD L IIPLGAG+EVGRSCV YK KT++FDCGIHP Y+G+A+LPYFDEID + +D L
Sbjct: 9 GDLLEIIPLGAGSEVGRSCVIARYKQKTLMFDCGIHPGYAGLASLPYFDEIDLADVDALF 68
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-EDMLFDEQD 139
+THFHLDH A++P+ +T F+GR+FMTH TKAIY +L+ D+ ++ K + LF E+D
Sbjct: 69 VTHFHLDHCAAVPFLCGRTDFNGRIFMTHPTKAIYHMLMQDFCRLLKNQEPSEQLFGEKD 128
Query: 140 INRSMDRIEV 149
+ SM +IEV
Sbjct: 129 LEASMKKIEV 138
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 99/138 (71%), Gaps = 6/138 (4%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V +Q LG GNEVGRSC + +KGKTI+ D GIHPAY GMA+LP++D+ D S +
Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIV 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SV 130
DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + +
Sbjct: 63 DVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAE 122
Query: 131 EDMLFDEQDINRSMDRIE 148
+D L+ +D+ S D+IE
Sbjct: 123 DDNLYSNEDLIESFDKIE 140
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 107/143 (74%), Gaps = 5/143 (3%)
Query: 8 PSLKRRDVPVSREGDQ-LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
P +R P +GD+ L IPLGAGNEVGRSC + +KGKTI+FDCG HP Y G +LP
Sbjct: 9 PGSAKRSFPF--QGDETLEFIPLGAGNEVGRSCCLLKFKGKTIMFDCGAHPGYRGEESLP 66
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+FDE+D +ID+LL+THFH+DHAAS+PYFL KTTF G+V+MT+ T AI KL+ +D++KVS
Sbjct: 67 FFDEVDAESIDLLLVTHFHVDHAASVPYFLTKTTFKGKVYMTYPTLAICKLVWSDFIKVS 126
Query: 127 KVSVE--DMLFDEQDINRSMDRI 147
+S + L+ E+DI ++++I
Sbjct: 127 GISEQYGGSLYTEKDIQETVNKI 149
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 97/126 (76%), Gaps = 6/126 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKTI+ D G+HPAY GMA+LP++D+ D S +D+LLI+HFHLDH
Sbjct: 14 LGGGNEVGRSCHIIQYKGKTIMLDAGVHPAYQGMASLPFYDDFDLSTVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINR 142
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + V E+ L+ ++D+
Sbjct: 74 AASLPYVMQRTPFKGRVFMTHPTKAIYRWLLRDFVRVTAIGVDSTLAAEESLYTDEDLAE 133
Query: 143 SMDRIE 148
S D+IE
Sbjct: 134 SFDKIE 139
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 98/125 (78%), Gaps = 5/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKTI+ D GIHPAY G+A+LP++D+ D S++D+LLI+HFHLDH
Sbjct: 14 LGGGNEVGRSCHILQYKGKTIMLDAGIHPAYQGIASLPFYDDFDLSSVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFDEQDINRS 143
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + +D L+ ++D+ S
Sbjct: 74 AASLPYVMQRTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGINSTGEDDNLYTDEDLVES 133
Query: 144 MDRIE 148
D+IE
Sbjct: 134 FDKIE 138
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 100/137 (72%), Gaps = 9/137 (6%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+LT + LG G+EVGRSC + YKGKT++ D GIHPAY G+AALP++DE D S +DVLLI
Sbjct: 24 DELTFVALGGGSEVGRSCHIIQYKGKTVMLDAGIHPAYDGLAALPFYDEFDLSTVDVLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-----SKVSVED---- 132
THFH+DH ASLPY L KT F+GRV+MTH TKAIYK L+TD V+V S S D
Sbjct: 84 THFHMDHVASLPYVLAKTPFAGRVYMTHPTKAIYKHLMTDSVRVQNTHTSATSGTDGYVA 143
Query: 133 MLFDEQDINRSMDRIEV 149
LF+EQDI +M +I+
Sbjct: 144 QLFNEQDILTTMPQIQT 160
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 96/126 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ LTI+PLGAGNEVGRSC++++YK +IL DCG+HPAY+G ++LP+ D I+ S +D + I
Sbjct: 5 ENLTIMPLGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTSSLPFLDLINLSTVDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHA +LPY EKT F+G+VFMTH TKAI + LL DY+++ + E + E+D+N
Sbjct: 65 THFHLDHAGALPYLTEKTNFAGKVFMTHPTKAILRWLLNDYIRIINANTEIDFYSEKDLN 124
Query: 142 RSMDRI 147
D+I
Sbjct: 125 NCYDKI 130
>gi|47213099|emb|CAF89519.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 87/108 (80%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 3 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKV
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 110
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA + P SL + DQLTI LGAG EVGRSC + YKGKTI+ D G+HPA++
Sbjct: 1 MAPSVVPQSLAAGAALQASTDDQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFT 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKL 117
G+AALP+ DE+D S +D +LITHFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+
Sbjct: 61 GIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRF 120
Query: 118 LLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVC 150
L++D+V++S ED LFDE ++ S +IE
Sbjct: 121 LMSDFVRISNAGNEDHLFDENEMLASWRQIEAV 153
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 98/132 (74%), Gaps = 5/132 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L LG GNEVGRSC + +KGKTI+ D G+HPA+ G ++LP++DE D S IDVLLI
Sbjct: 7 NSLKFFALGGGNEVGRSCHILQFKGKTIMLDAGVHPAHQGYSSLPFYDEFDLSKIDVLLI 66
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFD 136
+HFH+DHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + V +D L+
Sbjct: 67 SHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGVSSGGKDDNLYT 126
Query: 137 EQDINRSMDRIE 148
++D+ S DRIE
Sbjct: 127 DEDLAESFDRIE 138
>gi|440493393|gb|ELQ75870.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) [Trachipleistophora hominis]
Length = 801
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 96/126 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LTI+PLGAGNEVGRSC++++YK +IL DCG+HPAY+G A+LP+ D I+ S +D + I
Sbjct: 5 DNLTIMPLGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTASLPFLDLINLSTVDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHA +LPY EKT F+G+VFMTH TKAI + LL DY+++ + E + E+D++
Sbjct: 65 THFHLDHAGALPYLTEKTAFTGKVFMTHPTKAILRWLLNDYIRIINTNTEIDFYTEKDLS 124
Query: 142 RSMDRI 147
D+I
Sbjct: 125 NCYDKI 130
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 95/126 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I PLGAGNEVGRSC+++ YK + IL DCG+HPAY+G+++LP+ D +D S ID +L+
Sbjct: 5 EKVVIKPLGAGNEVGRSCIHLKYKNREILLDCGVHPAYTGVSSLPFLDLVDLSKIDAILV 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT F G+V+MTH TKAI K LL DY++V S E + EQD+
Sbjct: 65 THFHLDHAAALPFLTEKTEFKGKVYMTHPTKAILKWLLNDYIRVINSSSEQDFYTEQDLQ 124
Query: 142 RSMDRI 147
D+I
Sbjct: 125 SCYDKI 130
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 164 bits (416), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D LT + LG GNEVGRSC + YKGKT++ D G+HPAY G+A LP++D+ D S +DVL
Sbjct: 18 ESDHLTFLCLGGGNEVGRSCHILKYKGKTVMLDAGVHPAYEGLAGLPFYDQFDLSTVDVL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-SVEDMLFDEQ 138
LI+HFHLDHAASLPY + KT F GRVFMTH TKAIYK L+ D V+V V + D L+ E
Sbjct: 78 LISHFHLDHAASLPYVMTKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNVHNSPDNLYTES 137
Query: 139 DINRSMDRIE 148
D S RIE
Sbjct: 138 DHLSSYSRIE 147
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 98/131 (74%), Gaps = 6/131 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L LG GNEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S +DVLLI+H
Sbjct: 13 LRFYSLGGGNEVGRSCHILQYKGKTVMLDAGVHPAHQGLASLPFYDEFDLSTVDVLLISH 72
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDE 137
FHLDHAASLPY +++T F GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ +
Sbjct: 73 FHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLSDFVKVTSIGSTSFSDKDENLYTD 132
Query: 138 QDINRSMDRIE 148
+D+ S DRIE
Sbjct: 133 EDLAESFDRIE 143
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 97/125 (77%), Gaps = 5/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++D+ D S IDVLLI+HFHLDH
Sbjct: 24 LGGANEVGRSCHIIQYKGKTVMLDAGIHPAYQGLASLPFYDDFDLSTIDVLLISHFHLDH 83
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDEQDINRS 143
AASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + + ++ L++++D+ S
Sbjct: 84 AASLPYVMQRTNFRGRVFMTHPTKAIYRWLLRDFVKVTSIGGDAENKDENLYNDEDLVES 143
Query: 144 MDRIE 148
DRIE
Sbjct: 144 FDRIE 148
>gi|95768245|gb|ABF57340.1| cleavage and polyadenylation specific factor 3 [Bos taurus]
Length = 114
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/108 (66%), Positives = 87/108 (80%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKV
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 109/152 (71%), Gaps = 20/152 (13%)
Query: 18 SREGDQL----TIIPLGAGNEVGRSCVYMSY--KGKTILFDCGIHPAYSGMAALPYFDEI 71
+REG +L +IPLGAG+EVGRSC+ S+ K ++FDCGIHP +SG+++LPYFDEI
Sbjct: 38 NREGQELGELLELIPLGAGSEVGRSCIVASFFEGKKNVMFDCGIHPGFSGLSSLPYFDEI 97
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS----- 126
D SAIDVLL+THFHLDH A++P+ + +T F GRVFMTHATKAI+ +L++D+V++S
Sbjct: 98 DVSAIDVLLVTHFHLDHCAAVPFLVNRTNFKGRVFMTHATKAIFHMLMSDFVRLSARQQP 157
Query: 127 ---------KVSVEDMLFDEQDINRSMDRIEV 149
+ E L+D +D+ +MD+IEV
Sbjct: 158 KAKGSEEKEEEEDESQLWDAKDLKAAMDKIEV 189
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQ LG GNEVGRS + +KGKT++ D G+HPA+ GMA+LP++DE D +DVLLI
Sbjct: 14 DQFRFFCLGGGNEVGRSSHIIQFKGKTVMLDAGVHPAFQGMASLPFYDEFDLGTVDVLLI 73
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE-DMLFDEQDI 140
+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + + + L+ ++D+
Sbjct: 74 SHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQLYSDKDL 133
Query: 141 NRSMDRIEVC 150
S DRIE
Sbjct: 134 KDSFDRIETI 143
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ D + + LG G EVGRSC +S+KGKTI+ D G+HPA+SG+A+LP++DE D S ID+L
Sbjct: 33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDIL 92
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQ 138
LI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+ + D L+ E
Sbjct: 93 LISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEA 152
Query: 139 DINRSMDRIE 148
D+ S ++IE
Sbjct: 153 DLTASFNKIE 162
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQLTI LGAG EVGRSC + YKGKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDRIEVC 150
++ S +IE
Sbjct: 142 EMFASWRQIEAV 153
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQLTI LGAG EVGRSC + YKGKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDRIEVC 150
++ S +IE
Sbjct: 142 EMLASWRQIEAV 153
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQLTI LGAG EVGRSC + Y+GKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDRIEVC 150
++ S +IE
Sbjct: 142 EMLASWRQIEAV 153
>gi|294945156|ref|XP_002784572.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897691|gb|EER16368.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 213
Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 102/140 (72%), Gaps = 4/140 (2%)
Query: 15 VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--- 71
V V+ D L I PLGAG EVGRSCV + ++G+T++FDCGIHPA++GM ALP+FD +
Sbjct: 16 VAVAPSMDTLEITPLGAGQEVGRSCVILKFRGRTVMFDCGIHPAHTGMTALPFFDHLSTA 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-V 130
D + +D+LL+THFHLDH+ ++PY + +T F GR +MTH T+ I +LL DY +VSK++
Sbjct: 76 DLTNVDLLLVTHFHLDHSGAVPYLIGRTDFKGRTYMTHPTRPICRLLWQDYARVSKITAA 135
Query: 131 EDMLFDEQDINRSMDRIEVC 150
ED ++ DI++ M RI+ C
Sbjct: 136 EDQVYGRTDIDKCMQRIDTC 155
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 95/126 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I+PLGAGNEVGRSCV + G+TI+ DCG+HPAY+GMA+LP+ D +D S ID + I
Sbjct: 92 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFI 151
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+F G+V+MTH TKAI K LL DY+++ S + + E D+
Sbjct: 152 THFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLV 211
Query: 142 RSMDRI 147
+ DRI
Sbjct: 212 KCYDRI 217
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 101/142 (71%)
Query: 8 PSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P ++ D + + + I+PLGAG EVGRSC+ + Y GKT++ DCG+HP + G+A+LP+
Sbjct: 9 PQKRKSDADGTPDDSVVQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGFFGIASLPF 68
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FDE+D S +D +L+THFHLDH A++PY T+F GRV MTH TKAI LL D+VKVSK
Sbjct: 69 FDEVDLSEVDAMLVTHFHLDHCAAVPYVTGHTSFRGRVLMTHPTKAIVHTLLKDFVKVSK 128
Query: 128 VSVEDMLFDEQDINRSMDRIEV 149
+ L+ E+D++ +M+R EV
Sbjct: 129 GGSGEGLYSERDLDAAMERTEV 150
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 95/126 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I+PLGAGNEVGRSCV + G+TI+ DCG+HPAY+GMA+LP+ D +D S ID + I
Sbjct: 5 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+F G+V+MTH TKAI K LL DY+++ S + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLV 124
Query: 142 RSMDRI 147
+ DRI
Sbjct: 125 KCYDRI 130
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 94/129 (72%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++L I LGAG EVGRSC + +K ++ D GIHP +G+ LP+ D DP ID+LLI
Sbjct: 8 EELVITMLGAGQEVGRSCHLIEFKVLELIQDMGIHPGINGLNGLPFMDYTDPDKIDILLI 67
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+HFHLDH LP+FL KT F GRVFMT+ATKAIY+ LL+DY+KVS V VE++LF E+D+
Sbjct: 68 SHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKVSNVGVEELLFTEKDLE 127
Query: 142 RSMDRIEVC 150
++DRIE
Sbjct: 128 ETLDRIETV 136
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 96/128 (75%), Gaps = 5/128 (3%)
Query: 27 IPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+ LG NEVGRSC + +KGKT++ D GIHPAY G+A+LP++DE D S IDVLLI+HFHL
Sbjct: 12 LSLGGSNEVGRSCHVLQFKGKTVMLDTGIHPAYQGLASLPFYDEFDLSKIDVLLISHFHL 71
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFDEQDIN 141
DHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + ++ L+ ++D+
Sbjct: 72 DHAASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGTTSSEKDENLYTDEDLA 131
Query: 142 RSMDRIEV 149
S D+IE
Sbjct: 132 DSFDKIET 139
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/129 (55%), Positives = 94/129 (72%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++L I LGAG EVGRSC + +K ++ D GIHP +G+ LP+ D DP ID+LLI
Sbjct: 8 EELVITMLGAGQEVGRSCHLIEFKVLELIEDMGIHPGINGLNGLPFMDYTDPDKIDILLI 67
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+HFHLDH LP+FL KT F GRVFMT+ATKAIY+ LL+DY+KVS V VE++LF E+D+
Sbjct: 68 SHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKVSNVGVEELLFTEKDLE 127
Query: 142 RSMDRIEVC 150
++DRIE
Sbjct: 128 ETLDRIETV 136
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 99/133 (74%), Gaps = 6/133 (4%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++L LG GNEVGRSC + YKGK ++ D G+HPA+SG +LP++D+ D S +DVLLI
Sbjct: 3 EELNFYCLGGGNEVGRSCHIVEYKGKVVMLDAGVHPAFSGAESLPFYDDFDLSKVDVLLI 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE------DMLF 135
+HFHLDHAASLPY ++ T F GRVFMT+ TKAIYK LL D+V+V+ ++ + + L+
Sbjct: 63 SHFHLDHAASLPYVMQHTNFKGRVFMTYPTKAIYKWLLNDFVRVTSIADDNDENSANFLY 122
Query: 136 DEQDINRSMDRIE 148
++D+N S+DRIE
Sbjct: 123 TDEDLNESLDRIE 135
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDE 137
I+HFH+DHAASLPY L KT F GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPTSSLVYTE 140
Query: 138 QDINRSMDRIEV 149
+D ++ IE
Sbjct: 141 EDHLKTFPMIEA 152
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 96/130 (73%), Gaps = 8/130 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDRIEVC 150
S D+IE
Sbjct: 134 VDSFDKIETV 143
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 96/130 (73%), Gaps = 8/130 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDRIEVC 150
S D+IE
Sbjct: 134 VDSFDKIETV 143
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 96/129 (74%), Gaps = 7/129 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-------LFDEQDIN 141
AASLPY +++T F GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLA 135
Query: 142 RSMDRIEVC 150
S DRIE
Sbjct: 136 ESFDRIETV 144
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 95/127 (74%), Gaps = 3/127 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DTLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMD 145
D+ + +D
Sbjct: 131 DLEKVID 137
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 96/129 (74%), Gaps = 7/129 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDIN 141
AASLPY +++T F GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDSAGGVSDENLYTDEDLA 135
Query: 142 RSMDRIEVC 150
S DRIE
Sbjct: 136 ESFDRIETV 144
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 96/139 (69%), Gaps = 5/139 (3%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDRIE 148
L+ EQD ++ +IE
Sbjct: 135 QRTTLYTEQDHLSTLSQIE 153
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/126 (52%), Positives = 92/126 (73%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ + PLGAGNEVGRSC+ +SY K I+FDCG+H A++G+A+LP+ D +D S +D I
Sbjct: 29 NKIKVKPLGAGNEVGRSCILISYNNKNIMFDCGVHSAHTGIASLPFLDTVDLSTVDACFI 88
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA LPY EKT F G+VFMTH TKAI + +L DYV++ S + + E+D+N
Sbjct: 89 THFHLDHAAGLPYLTEKTNFKGKVFMTHPTKAILRWMLNDYVRIINASSDVDFYTEKDLN 148
Query: 142 RSMDRI 147
++I
Sbjct: 149 NCYNKI 154
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/140 (56%), Positives = 96/140 (68%), Gaps = 5/140 (3%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDRIEV 149
L+ EQD ++ +IE
Sbjct: 135 QRTTLYTEQDHLSTLSQIEA 154
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDRIEV 149
+D ++ IE
Sbjct: 141 EDHLKTFPMIEA 152
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDRIEV 149
+D ++ IE
Sbjct: 141 EDHLKTFPMIEA 152
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 97/127 (76%), Gaps = 7/127 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE + S +DVLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFNLSKVDVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDIN 141
AASLPY +++T F GRVFMTH TKAIY+ LL+D+VKV+ + S ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNGTAASSGDENLYTDEDLA 135
Query: 142 RSMDRIE 148
S D+IE
Sbjct: 136 ESFDKIE 142
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 95/130 (73%), Gaps = 8/130 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S ID+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHVLQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKIDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV--------EDMLFDEQDI 140
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDESLFSDEDL 133
Query: 141 NRSMDRIEVC 150
S D+IE
Sbjct: 134 VDSFDKIETV 143
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 93/130 (71%), Gaps = 3/130 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 24 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 84 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 143
Query: 139 DINRSMDRIE 148
D + +IE
Sbjct: 144 DHLNTFPQIE 153
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 96/130 (73%), Gaps = 8/130 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F G+VFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDRIEVC 150
S D+IE
Sbjct: 134 VDSFDKIETV 143
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 4/131 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDRIE 148
QD ++ IE
Sbjct: 143 QDHLSTLSHIE 153
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 4/131 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDRIE 148
QD ++ IE
Sbjct: 143 QDHLSTLSHIE 153
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSQVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 82 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQLVYTEQ 141
Query: 139 D 139
D
Sbjct: 142 D 142
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDRIE 148
L+ EQD ++ IE
Sbjct: 135 QRTTLYTEQDHLSTLSHIE 153
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 142
Query: 139 D 139
D
Sbjct: 143 D 143
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 95/139 (68%), Gaps = 4/139 (2%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELIFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQT 134
Query: 134 ---LFDEQDINRSMDRIEV 149
L+ EQD + +IE
Sbjct: 135 TQPLYTEQDHLNTFPQIEA 153
>gi|240274420|gb|EER37936.1| endoribonuclease ysh-1 [Ajellomyces capsulatus H143]
Length = 240
Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 95/141 (67%), Gaps = 5/141 (3%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDRIEVC 150
L+ EQD ++ IE
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAI 155
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 142
Query: 139 D 139
D
Sbjct: 143 D 143
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 8/132 (6%)
Query: 27 IPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+ LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++D+ D S ID+LLI+HFHL
Sbjct: 12 LSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDDFDLSKIDILLISHFHL 71
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV--------EDMLFDEQ 138
DHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + ++ LF ++
Sbjct: 72 DHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDESLFSDE 131
Query: 139 DINRSMDRIEVC 150
D+ S D+IE
Sbjct: 132 DLVDSFDKIETV 143
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 158 bits (399), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 142
Query: 139 D 139
D
Sbjct: 143 D 143
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 95/127 (74%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
+++ I+PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID +
Sbjct: 4 NEKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIF 63
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
ITHFHLDHAA+LP+ EKT+F G+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 64 ITHFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDL 123
Query: 141 NRSMDRI 147
+ DRI
Sbjct: 124 VKCYDRI 130
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 95/127 (74%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
+++ I+PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID +
Sbjct: 4 NEKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIF 63
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
ITHFHLDHAA+LP+ EKT+F G+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 64 ITHFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTESDL 123
Query: 141 NRSMDRI 147
+ DRI
Sbjct: 124 IKCYDRI 130
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 2 ASTGQPPSLKRRDVPVS-REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+S+G+ K+ D+ + + + LTI PLGAG EVGRSC + +KG TI+ DCGIHP
Sbjct: 28 SSSGKNAGDKKADMGAADADPNVLTITPLGAGQEVGRSCHILKFKGFTIMLDCGIHPGLK 87
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
G A+LP+ +I+ + ID++LITHFHLDH +LP+ LE++TFSGRVFMT ATKAIY+ +L
Sbjct: 88 GKASLPFVSQIELNKIDLVLITHFHLDHCGALPWLLERSTFSGRVFMTPATKAIYRWILE 147
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYV+VS +S ++ +D+ S+ +IE
Sbjct: 148 DYVRVSNISNFAEMYSLEDVENSLAKIET 176
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QD 139
QD
Sbjct: 143 QD 144
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QD 139
QD
Sbjct: 143 QD 144
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QD 139
QD
Sbjct: 143 QD 144
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 90/122 (73%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPAY G++A+P++DE D S +DVLLI
Sbjct: 22 DELLFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S ++ E
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTE 141
Query: 138 QD 139
QD
Sbjct: 142 QD 143
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 94/138 (68%), Gaps = 4/138 (2%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELVFTCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---V 130
S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHVDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPT 134
Query: 131 EDMLFDEQDINRSMDRIE 148
++ EQD + +IE
Sbjct: 135 SQPVYTEQDHLNTFPQIE 152
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 92/130 (70%), Gaps = 3/130 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 25 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 84
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 85 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQ 144
Query: 139 DINRSMDRIE 148
D + +IE
Sbjct: 145 DHLNTFSQIE 154
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 92/130 (70%), Gaps = 3/130 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 25 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 84
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 85 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQ 144
Query: 139 DINRSMDRIE 148
D + +IE
Sbjct: 145 DHLNTFSQIE 154
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 94/130 (72%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S DQ++I PLGAG+EVGRSC+++ Y+ K L DCG+HPAY+G++ LP+ D I+ ID
Sbjct: 4 SNHKDQISIKPLGAGSEVGRSCIHIKYQEKQFLMDCGVHPAYTGVSCLPFLDLINLEEID 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+ ITHFHLDHAA+LP+ EKT F G+V+MTH TKAI K LL DY+++ + ++ + E
Sbjct: 64 AVFITHFHLDHAAALPFLTEKTAFKGKVYMTHPTKAILKWLLNDYIRIINSASDEDFYTE 123
Query: 138 QDINRSMDRI 147
+D+ ++I
Sbjct: 124 KDLENCYNKI 133
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 91/130 (70%), Gaps = 5/130 (3%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLL++HFHLDH+A+LPY L KT F GR+FMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRIFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQD 139
L+ EQD
Sbjct: 135 QRTTLYTEQD 144
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S D L+ PLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID
Sbjct: 5 SDNSDALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENID 64
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLF 135
+LLITHFHLDH +LP+ L+KT F G+ FMTHATKAIY++LL DYV++SK D L+
Sbjct: 65 LLLITHFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLY 124
Query: 136 DEQDINRSMDRIE 148
E D+ +SM +IE
Sbjct: 125 TEDDLEKSMAKIE 137
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 95/126 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ ++PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID + +
Sbjct: 5 EKIKVMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFV 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+F G+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDLV 124
Query: 142 RSMDRI 147
+ DRI
Sbjct: 125 KCYDRI 130
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 5/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRS + YK KT++ D G+HPAY G A+LPY+DE D S +D+LLI+HFH+DH
Sbjct: 15 LGGSNEVGRSSHMLQYKNKTVMLDAGVHPAYQGYASLPYYDEFDLSKVDILLISHFHVDH 74
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDEQDINRS 143
AASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + ++ L+ ++D+ S
Sbjct: 75 AASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGNSATGKDENLYTDEDLAES 134
Query: 144 MDRIE 148
DRIE
Sbjct: 135 FDRIE 139
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 93/130 (71%), Gaps = 2/130 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ PLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID+LLI
Sbjct: 9 DSLSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
THFHLDH +LP+ L+KT F G+ FMTHATKAIY++LL DYV++SK D L+ E D
Sbjct: 69 THFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLYTEDD 128
Query: 140 INRSMDRIEV 149
+ +SM +IE
Sbjct: 129 LEKSMAKIET 138
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTS 130
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 94/139 (67%), Gaps = 4/139 (2%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + Y+GKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELIFTCLGGGNEVGRSCHIIQYRGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---V 130
S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLMQDSVRVGNTSSNPT 134
Query: 131 EDMLFDEQDINRSMDRIEV 149
++ EQD + +IE
Sbjct: 135 SQPVYTEQDHLNTFPQIEA 153
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 10/154 (6%)
Query: 1 MASTGQPPSLKRRDVPVSREGD-QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+ S QPP ++ GD +L I LGAG EVGRSC + YKGK I+ D G+HPAY
Sbjct: 13 LISPNQPPQKS------TKVGDSELRITLLGAGQEVGRSCCLIEYKGKRIVCDAGVHPAY 66
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYK 116
+G+AALP+ DE+D S +D LLITHFHLDHAA+L Y +EKT F G+V+MT TKA+Y+
Sbjct: 67 TGLAALPFIDELDWSTVDALLITHFHLDHAAALTYIMEKTNFKEGKGKVYMTSPTKAVYR 126
Query: 117 LLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVC 150
++ D+V++S S ED LF E ++ S I+V
Sbjct: 127 FMMQDFVRISTTSAEDQLFTESEMIASWRSIQVS 160
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 85/113 (75%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V+ D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +
Sbjct: 14 VADPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTV 73
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 74 DVLLISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTS 126
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 1/123 (0%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDRI 147
AASLPY +++T F GRVFMTH TKAIY+ LL D+V LF ++D+ S D+I
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVXXXXXXXXXXGLFSDEDLVDSFDKI 133
Query: 148 EVC 150
E
Sbjct: 134 ETV 136
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 92/131 (70%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDRIEV 149
D + +IE
Sbjct: 143 DHLNTFPQIEA 153
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 92/130 (70%), Gaps = 3/130 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+A+LP+FD+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLASLPFFDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 82 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQ 141
Query: 139 DINRSMDRIE 148
D + +IE
Sbjct: 142 DHLSTFRQIE 151
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 92/131 (70%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDRIEV 149
D + +IE
Sbjct: 143 DHLNTFPQIEA 153
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ I LG G+EVGRSC + YKGKT++ D G+HPAY G+++LP++D+ D S +D+LLI
Sbjct: 19 DMLSFICLGGGSEVGRSCHIVQYKGKTVMLDAGVHPAYDGISSLPFYDDFDLSTVDILLI 78
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
+HFHLDHA SLPY L KT F GRVFMTH TKAIYK L++D V+VS + E LF E D
Sbjct: 79 SHFHLDHAGSLPYVLTKTNFRGRVFMTHPTKAIYKWLMSDSVRVSNTTSEQTTQLFSETD 138
Query: 140 INRSMDRI 147
S +I
Sbjct: 139 HLSSFSQI 146
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 4/132 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S++D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDLSSVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A LPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDRIEV 149
++ ++ +IE
Sbjct: 143 EEHLSTLPQIEA 154
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 155 bits (392), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L PLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID+LLI
Sbjct: 9 DSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
THFHLDH +LP+ L+KT F G+ FMTHATKAIY++LL DYV++SK D L+ E D
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDD 128
Query: 140 INRSMDRIE 148
+ +SM +IE
Sbjct: 129 LEKSMAKIE 137
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 83/108 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 83 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTS 130
>gi|169598186|ref|XP_001792516.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
gi|111068983|gb|EAT90103.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
Length = 833
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 85/108 (78%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPAY G++A+P++DE D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS 129
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 4/132 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S++D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDLSSVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A LPY L KT F GRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDRIEV 149
++ ++ +IE
Sbjct: 143 EEHLSTLPQIEA 154
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 92/131 (70%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L +T F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLARTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPIYTEQ 142
Query: 139 DINRSMDRIEV 149
D + +IE
Sbjct: 143 DHLSTFPQIEA 153
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + DVP + D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T F GRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDRIE 148
S D++ +E + ++++IE
Sbjct: 142 SANDIVTNEW-LQSTIEKIE 160
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + DVP + D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T F GRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDRIE 148
S D++ +E + ++++IE
Sbjct: 142 SANDIVTNEW-LQSTIEKIE 160
>gi|224107036|ref|XP_002333577.1| predicted protein [Populus trichocarpa]
gi|222837472|gb|EEE75851.1| predicted protein [Populus trichocarpa]
Length = 118
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 79/89 (88%), Gaps = 1/89 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MASTGQ SLKRRD PV+REG DQLT+ PLGAGNEVGRSCVYMS+KGKT+LFDCGIHPAY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDH 88
SGMAALPYFDEIDPS IDVLL+T + H
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTQYVFHH 89
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + DVP + D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T F GRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDRIE 148
S D++ +E + ++++IE
Sbjct: 142 SANDIVTNEW-LQSTIEKIE 160
>gi|392338884|ref|XP_003753662.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
gi|392345811|ref|XP_003749372.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
Length = 1015
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
Query: 18 SREGDQLTIIPLGAGNEVGRS-CVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E +QL I PLGAG S C+ + +KG+ I+ DCGI+P GM ALPY D + + I
Sbjct: 6 AEESNQLLIXPLGAGGPTRTSQCIILEFKGRKIMLDCGIYPVLEGMDALPYIDPNNLAEI 65
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+LLI+HFHLDH +L +FL+KT+F G +FMTHATKAIY+ LL+DYVKVS +S +DML
Sbjct: 66 DLLLISHFHLDHCEALXWFLQKTSFKGWMFMTHATKAIYRWLLSDYVKVSNISADDMLHT 125
Query: 137 EQDINRSMDRIE 148
E D+ SM++++
Sbjct: 126 ETDLEESMNKVK 137
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/109 (63%), Positives = 82/109 (75%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+A LP+FD+ D S +DVLL
Sbjct: 22 ADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAGLPFFDDFDLSTVDVLL 81
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 82 ISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTS 130
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QD 139
D
Sbjct: 142 HD 143
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 95/142 (66%), Gaps = 14/142 (9%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ D G+HP Y+G+++LP++DE D S +D+LLI
Sbjct: 6 DNFRFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLSKVDILLI 65
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------------- 128
+HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LL+D+V+V+ +
Sbjct: 66 SHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNE 125
Query: 129 -SVEDMLFDEQDINRSMDRIEV 149
+ L+ + D+ RS DRIE
Sbjct: 126 TATSSNLYTDDDLIRSFDRIET 147
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QD 139
D
Sbjct: 142 HD 143
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/130 (53%), Positives = 97/130 (74%), Gaps = 3/130 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ + LGAG EVGRSC + YKG+TI+ D G+HPA+SGMAALP+ DE+D S +D +LI
Sbjct: 28 DEMEVQLLGAGQEVGRSCCVIRYKGRTIVCDAGVHPAFSGMAALPFLDELDWSTVDAILI 87
Query: 82 THFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA L Y +EKT F +G V+M+H TKA+Y+ L++D+V+VS +D LF E
Sbjct: 88 THFHLDHAACLTYVMEKTNFKEGNGVVYMSHPTKAVYRYLMSDFVRVSTAGSDDNLFTES 147
Query: 139 DINRSMDRIE 148
++ S D+I+
Sbjct: 148 EMLASFDQIQ 157
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRS + YKGKT++ D G+HPAY G+AALP++DE D
Sbjct: 15 DEPVD-PSDELLFYCLGGGNEVGRSSHIIQYKGKTVMLDAGMHPAYDGLAALPFYDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 74 STVDVLLISHFHIDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNIS 129
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 95/141 (67%), Gaps = 14/141 (9%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ D G+HP Y+G+++LP++DE D S +D+LLI
Sbjct: 6 DNFRFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLSKVDILLI 65
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------------- 128
+HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LL+D+V+V+ +
Sbjct: 66 SHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNE 125
Query: 129 -SVEDMLFDEQDINRSMDRIE 148
+ L+ + D+ RS DRIE
Sbjct: 126 TATSSNLYTDDDLIRSFDRIE 146
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QD 139
D
Sbjct: 142 HD 143
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 87/122 (71%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QD 139
D
Sbjct: 142 HD 143
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS + L+ E
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTE 142
Query: 138 QD 139
QD
Sbjct: 143 QD 144
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 88/122 (72%), Gaps = 4/122 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS + L+ E
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTE 142
Query: 138 QD 139
QD
Sbjct: 143 QD 144
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/125 (53%), Positives = 86/125 (68%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L I PLGAGNEVGRSC+++ YK +L D GIHPA++G ALP+ D ID ID L +T
Sbjct: 6 KLKITPLGAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVIDLHKIDALFVT 65
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
HFHLDHA +LPY EKT F G++FMTH TK+I K LL DY KV S + ++ E D+
Sbjct: 66 HFHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKVVNASSNEDMYTEADLKN 125
Query: 143 SMDRI 147
++I
Sbjct: 126 CYNKI 130
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 3/134 (2%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
VS +++ I LGAG EVGRSC + YK T++ D GIHPA+SGMAALP+ DEID S++
Sbjct: 25 VSGLDEEMKITMLGAGQEVGRSCCVIEYKSTTVVCDTGIHPAFSGMAALPFIDEIDWSSV 84
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
D +LITHFHLDHAASL Y +E T F G+VFMTH TKA+Y+ L+ D+V++S + +
Sbjct: 85 DAILITHFHLDHAASLTYIMENTNFKEGHGKVFMTHPTKAVYRFLMQDFVRMSTIGTDSE 144
Query: 134 LFDEQDINRSMDRI 147
LF+E+ + S D I
Sbjct: 145 LFNEEQMIASYDSI 158
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 82/108 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTS 129
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/139 (53%), Positives = 93/139 (66%), Gaps = 11/139 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D S +D+LLI
Sbjct: 24 DELMFLALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------SKVSVED-- 132
THFH DH+ASLPY L KT F+GRV+MTH TKAIYK D V+V S S D
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPASSSSGTDGY 143
Query: 133 --MLFDEQDINRSMDRIEV 149
L+ EQDI +M I+
Sbjct: 144 VSQLYTEQDILSTMPMIQT 162
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +DVLLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS 129
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 129
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS 129
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 95/147 (64%), Gaps = 12/147 (8%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+D PV D+ + LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D
Sbjct: 17 QDEPVD-PSDEFMFLALGGGNEVGRSCHIVQYKGKTVMLDAGIHPSYEGLGALPFYDEFD 75
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV------- 125
S +D+LLITHFH DH+ASLPY L KT F G+VFMTH TKAIYK D V+V
Sbjct: 76 LSTVDLLLITHFHQDHSASLPYVLAKTDFHGKVFMTHPTKAIYKWTTQDAVRVHNTHTPA 135
Query: 126 SKVSVED----MLFDEQDINRSMDRIE 148
S S D L+ EQDI ++ I+
Sbjct: 136 SSTSGTDGYVSQLYTEQDILSTLPMIQ 162
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 93/138 (67%), Gaps = 11/138 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKTI+ D GIHP+Y G+ ALP++DE D S +D+LLI
Sbjct: 24 DELMFLALGGGNEVGRSCHIIQYKGKTIMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------SKVSVED-- 132
THFH DH+ASLPY L KT F+G+VFMTH TKAIYK D V+V S S D
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGKVFMTHPTKAIYKWTTQDAVRVHNTHAPASSTSGTDGY 143
Query: 133 --MLFDEQDINRSMDRIE 148
L+ EQDI ++ I+
Sbjct: 144 VSQLYTEQDILSTLPMIQ 161
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS 129
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELGFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 152 bits (383), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 85/108 (78%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V +S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMS 129
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELGFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>gi|390354408|ref|XP_796109.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 457
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 82/109 (75%)
Query: 42 MSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF 101
+ +KGK I+ DCGIHP GM +LPYFD IDP ID+LL++HFHLDH LPYFL+ T F
Sbjct: 2 LEFKGKKIMLDCGIHPGREGMDSLPYFDLIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQF 61
Query: 102 SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVC 150
GRVFMTHA+KAIY+ L+DYVKVS +S E ML+ + D+ SMDRIE
Sbjct: 62 RGRVFMTHASKAIYRWNLSDYVKVSNLSAERMLYTDADLQASMDRIETV 110
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 90/131 (68%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D ++I PLG+G EVGRSC + ++G TIL DCGIHP Y G+ LPY D I+P +DVLLI
Sbjct: 3 DIMSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEPDQVDVLLI 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYK---LLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDH ASLPY E+T+F GR+FMTH TKA+ + +++ ED+L+ E
Sbjct: 63 THFHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYTEA 122
Query: 139 DINRSMDRIEV 149
D+ +D+IE+
Sbjct: 123 DLQSCIDKIEL 133
>gi|358060736|dbj|GAA93507.1| hypothetical protein E5Q_00148 [Mixia osmundae IAM 14324]
Length = 1378
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 100/141 (70%), Gaps = 9/141 (6%)
Query: 17 VSREGD---QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
V +EGD ++ +I LGAG EVGRSC + YKG T++ D G+HPAYSGM ALP+ DE+D
Sbjct: 27 VLKEGDAADEMEVIMLGAGQEVGRSCCVIKYKGVTLVCDAGVHPAYSGMPALPFIDELDW 86
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
+D +L+THFHLDHAA LPY +EKT F GRV+MTHATK +Y+LL+ D+V++S +
Sbjct: 87 DTVDAILVTHFHLDHAAGLPYIMEKTNFKDGGGRVYMTHATKDVYELLMQDFVRISIIEG 146
Query: 131 EDM---LFDEQDINRSMDRIE 148
D + D +++ S++ I+
Sbjct: 147 TDTSQRIMDAENLEASLETIQ 167
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 93/139 (66%), Gaps = 11/139 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D S +D+LLI
Sbjct: 24 DELMFLALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------SKVSVED-- 132
THFH DH+ASLPY L KT F+GRV+MTH TKAIYK D V+V S S D
Sbjct: 84 THFHQDHSASLPYVLAKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPASSTSGTDGY 143
Query: 133 --MLFDEQDINRSMDRIEV 149
L+ EQDI ++ I+
Sbjct: 144 VSQLYTEQDILSTLPMIQT 162
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 92/140 (65%), Gaps = 12/140 (8%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELVFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 T---------HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+ HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 83 SQSELRYPMRHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQ 142
Query: 133 M---LFDEQDINRSMDRIEV 149
L+ EQD + +IE
Sbjct: 143 TTQPLYTEQDHLNTFPQIEA 162
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 92/137 (67%), Gaps = 10/137 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ DCG+HPA SG A+ PYFDE D S +D+LLI
Sbjct: 11 DSFKFFGLGGCNEVGRSCHIIEYKNKVIMLDCGMHPALSGHASFPYFDEYDISKVDILLI 70
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE---------- 131
+HFH+DH+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ +
Sbjct: 71 SHFHVDHSASLPYIMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGSSRAEAGGKDEG 130
Query: 132 DMLFDEQDINRSMDRIE 148
L+ + DI +S DRIE
Sbjct: 131 SNLYTDDDIMKSFDRIE 147
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 93/140 (66%), Gaps = 11/140 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ D G+HP SG+ +LP++DE D S +D+LL+
Sbjct: 8 DDFKFTGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLSGLNSLPFYDEYDLSKVDLLLV 67
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-----------V 130
+HFHLDHAASLPY ++ T F GRVFMTHATKAIY+ LLTD+V+V+ +S
Sbjct: 68 SHFHLDHAASLPYVMQHTNFRGRVFMTHATKAIYRWLLTDFVRVTSLSSNTSNDPNSGGT 127
Query: 131 EDMLFDEQDINRSMDRIEVC 150
L+ ++D+ +S DRIE
Sbjct: 128 SANLYTDEDLMKSFDRIETV 147
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+V+ +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTA 129
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 82/108 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+LT LG GNEVGRSC + YKGKT++ D G+H Y G+AALP++D+ D S +D+LLI
Sbjct: 22 DELTFTNLGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRVGGAS 129
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 99/141 (70%), Gaps = 11/141 (7%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
EG+ L I LGAG EVGRSCV +S+KG++++FDCGIHPA+SG+ +LP FD ID S ID+
Sbjct: 20 EGETLYIQVLGAGCEVGRSCVVVSFKGRSVMFDCGIHPAFSGIGSLPVFDAIDVSTIDLC 79
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------ 133
LITHFHLDH+ + PYF+ T F+G+VFMT TKAI KL+ DY +V+K S +
Sbjct: 80 LITHFHLDHSGATPYFVSLTDFNGKVFMTEPTKAICKLVWQDYARVNKFSAGSIESEEAP 139
Query: 134 -----LFDEQDINRSMDRIEV 149
L+ E+DI ++++ E+
Sbjct: 140 LSSINLYTEKDIEKAINMTEI 160
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+LT++PLGAG EVGRSC+ + Y K ++ DCGIHPAY LP+ D IDP+ IDVLLI
Sbjct: 9 DKLTVMPLGAGQEVGRSCIILKYHRKRVMLDCGIHPAYENFGGLPFIDAIDPAKIDVLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
THFH+DH ++P+FL +T FSG FMTH TK I K LL DYV VS + S E LF D+
Sbjct: 69 THFHIDHITAVPWFLTQTNFSGPCFMTHTTKTISKTLLVDYVGVSGRGSEEPNLFTRADV 128
Query: 141 NRSMDRI 147
+ I
Sbjct: 129 ANVQNMI 135
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 9/129 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D GIHPA +G ++ P++DE D S +D+LLI+HFHLDH
Sbjct: 17 LGGCNEVGRSCHIIEYKNKVIMLDAGIHPALTGHSSFPFYDEYDLSKVDILLISHFHLDH 76
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------LFDEQD 139
AASLPY +++TTF GRVFMT ATKAIY+ LL D+V+V+ + M L+ D
Sbjct: 77 AASLPYVMQQTTFKGRVFMTQATKAIYRWLLQDFVRVTSIGTTKMEGGEGQSSNLYTADD 136
Query: 140 INRSMDRIE 148
I +S DRIE
Sbjct: 137 IMKSFDRIE 145
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 80/99 (80%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 99
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 80/99 (80%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 99
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 81/105 (77%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+LT LG GNEVGRSC + YKGKT++ D G+H Y G+AALP++D+ D S +D+LL
Sbjct: 21 ADELTFTNLGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
I+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRV 125
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 80/99 (80%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 99
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 100/136 (73%), Gaps = 3/136 (2%)
Query: 14 DVPVS-REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
DVP + D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I
Sbjct: 28 DVPAAASSSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR 87
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
ID++LITHFHLDH +LPYF E+T F GRVFMT ATKA YK+++ D+++V S D
Sbjct: 88 CDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-ASAND 146
Query: 133 MLFDEQDINRSMDRIE 148
++ +E + ++++IE
Sbjct: 147 IVTNEW-LQSTIEKIE 161
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 97/150 (64%), Gaps = 14/150 (9%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTIL-----------FDCGIHPAYSG 61
+D PV D+L + LG GNEVGRSC + YKGKT++ D G HPAY G
Sbjct: 15 QDEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMVRKSRDALEAALDAGQHPAYDG 73
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
+AALP++D+ D S +DVLLI+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D
Sbjct: 74 LAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQD 133
Query: 122 YVKVSKVSVED--MLFDEQDINRSMDRIEV 149
V+V+ + L+ EQD + +IE
Sbjct: 134 SVRVANTASNSATQLYTEQDHLNTFPQIEA 163
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 97/127 (76%), Gaps = 2/127 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I+P+G+G EVGRSC+ + YKG++++ DCG HPA SG+ +LP+FD I IDV+LI
Sbjct: 36 DEVEILPIGSGGEVGRSCIVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIRCEEIDVVLI 95
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF E+T F GR+FMT ATKA YK+++ D+++V S ED++ +E +
Sbjct: 96 THFHLDHCGALPYFCEQTAFKGRIFMTSATKAFYKMVMNDFLRVG-ASAEDIVNNEW-LQ 153
Query: 142 RSMDRIE 148
++++IE
Sbjct: 154 STIEKIE 160
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 79/98 (80%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHA 110
DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHA
Sbjct: 3 LDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA 62
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
TKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 63 TKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 100
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 79/98 (80%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHA 110
DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHA
Sbjct: 5 LDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA 64
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
TKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE
Sbjct: 65 TKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIE 102
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 96/148 (64%), Gaps = 17/148 (11%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S + D LG NEVGRSC + YK K I+ D G+HP SGM +LP+FD+ D S +D
Sbjct: 8 SGDSDDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDSGVHPGLSGMNSLPFFDDYDLSKVD 67
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-------- 129
+LLI+HFHLDHAASLPY +++T+F GRVFMTHATKAIY+ LL+D+V+V+ +S
Sbjct: 68 ILLISHFHLDHAASLPYVMQQTSFRGRVFMTHATKAIYRWLLSDFVRVTSLSGSGDEGRS 127
Query: 130 ---------VEDMLFDEQDINRSMDRIE 148
L+ ++D+ S D+IE
Sbjct: 128 MNGSQNSGTTSANLYTDEDLMSSFDKIE 155
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 16/144 (11%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ D G+HP G+++LP++DE D S +D+LL+
Sbjct: 12 DDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLSKVDILLV 71
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------------- 128
+HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LL+D+VKV+ +
Sbjct: 72 SHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDP 131
Query: 129 ---SVEDMLFDEQDINRSMDRIEV 149
+ L+ + D+ RS DRIE
Sbjct: 132 NANTGSSNLYTDDDLMRSFDRIET 155
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +DVLLI+HFH+DH+++LPY L KT F GRVFMT AT+AIYK L+ D V+VS S
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTS 130
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 8/146 (5%)
Query: 3 STGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
ST P +L R + P D++ ++P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+
Sbjct: 11 STAAPAAL-RSNAP-----DEVEVLPIGSGGEVGRSCVVVQYKGRGVMLDCGNHPAKSGL 64
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
+LP+FD I IDV+LITHFHLDH +LPYF +T+F GRVFMT ATKA YK+++ D+
Sbjct: 65 DSLPFFDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDF 124
Query: 123 VKVSKVSVEDMLFDEQDINRSMDRIE 148
+++ D++ E + ++DRIE
Sbjct: 125 LRIG-AGASDLVTSEW-LQSTIDRIE 148
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LL++HFH+DH+++LPY L KT F GRV THATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTS 130
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LL++HFH+DH+++LPY L KT F GRV THATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTS 130
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I ID++LI
Sbjct: 37 DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF E+T+F GR+FMT ATKA YK+++ D++++ S ED++ +E +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIG-ASAEDIVNNEW-LQ 154
Query: 142 RSMDRIE 148
++++IE
Sbjct: 155 STIEKIE 161
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 98/127 (77%), Gaps = 2/127 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I ID++LI
Sbjct: 37 DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF E+T+F GR+FMT ATKA YK+++ D++++ S ED++ +E +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIG-ASAEDIVNNEW-LQ 154
Query: 142 RSMDRIE 148
++++IE
Sbjct: 155 STIEKIE 161
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E + LG NEVGRSC + YK K I+ D G+HPA +G ++ P++DE D S +D+L
Sbjct: 10 ESESFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPALTGHSSFPFYDEYDLSKVDIL 69
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV----------S 129
LI+HFHLDHAASLPY ++ TTF GRVFMTHATKAIY+ LL D+V+V+ +
Sbjct: 70 LISHFHLDHAASLPYVMQHTTFKGRVFMTHATKAIYRWLLQDFVRVTSIGAGSRAEGSDE 129
Query: 130 VEDMLFDEQDINRSMDRIEV 149
L+ + DI S DRIE
Sbjct: 130 TSTNLYTDDDIISSFDRIET 149
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 98/142 (69%), Gaps = 14/142 (9%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L I LGAG EVGRSCV +++KG++++FDCGIHPA+SG+ +LP FD +D S+ID+ L+
Sbjct: 22 ETLFIQALGAGCEVGRSCVVVTFKGRSVMFDCGIHPAFSGIGSLPVFDAVDISSIDLCLV 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--------- 132
THFHLDH+ ++PYF+ T F+GR+FMT TKAI KL+ DY ++++ S
Sbjct: 82 THFHLDHSGAIPYFVSSTDFNGRIFMTEPTKAICKLVWQDYARMNRFSTNSPVPVDSDEA 141
Query: 133 -----MLFDEQDINRSMDRIEV 149
L+ E DI ++M RIE+
Sbjct: 142 PVSCVNLYTEPDIEKAMKRIEI 163
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 82/108 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +DVLLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DH+++LPY L KT F GRVFMT AT+AIYK L+ D V+VS S
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTS 130
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 80/100 (80%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+HPA+ G++ALP++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAFDGLSALPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D
Sbjct: 82 SHFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQD 121
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 94/127 (74%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L+I LGAG EVGRSC + Y+GKTI+ D G+HPAY+G+A+LP+ DE+D S +DVLLITH
Sbjct: 7 LSITLLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYNGIASLPFIDELDWSTVDVLLITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D+V++S S D LF D+
Sbjct: 67 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSS-STSDALFSPLDL 125
Query: 141 NRSMDRI 147
+ SM I
Sbjct: 126 SMSMSAI 132
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 90/123 (73%), Gaps = 3/123 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGAG EVGRSC + YK T++ D G+HPAY+GMAALP+ DEID S +D +LITHFHLDH
Sbjct: 2 LGAGQEVGRSCCVIEYKSVTVVCDTGVHPAYTGMAALPFIDEIDWSTVDAILITHFHLDH 61
Query: 89 AASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
AASL Y +E T F +G+VFMTH TKA+Y+ L+ D+V++S + + LF+E+ + S +
Sbjct: 62 AASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGTDGELFNEEQMTLSYE 121
Query: 146 RIE 148
I
Sbjct: 122 SIN 124
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 94/127 (74%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L+I LGAG EVGRSC + Y+G T++ D G+HPAYSGMA+LP+ DE+D S +D LLITH
Sbjct: 7 LSITLLGAGQEVGRSCCVLKYRGLTVVCDAGVHPAYSGMASLPFVDELDWSTVDALLITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAASL Y +EKT F +G+V+MTH TKA+YK ++ D+V++S S D LF D+
Sbjct: 67 FHLDHAASLTYIMEKTNFRDGNGKVYMTHPTKAVYKFMMQDFVRMSAAST-DALFTPLDL 125
Query: 141 NRSMDRI 147
+ S+ I
Sbjct: 126 SMSLASI 132
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 98/137 (71%), Gaps = 10/137 (7%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DVP L++ LGAG EVGRSC + Y+GKT++ D G+HPAY+GMA+LP+ DE+D
Sbjct: 3 DVPT------LSVTCLGAGQEVGRSCCVLQYRGKTVVCDAGVHPAYTGMASLPFIDELDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DVLLITHFHLDHAASL Y +EKT F G+V+MTH TKA+YK ++ D+V++S S
Sbjct: 57 STVDVLLITHFHLDHAASLTYIMEKTNFRDGHGKVYMTHPTKAVYKFMMQDFVRMSSSSS 116
Query: 131 EDMLFDEQDINRSMDRI 147
D LF D++ S+ I
Sbjct: 117 -DALFSPLDLSMSLSSI 132
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 65/108 (60%), Positives = 81/108 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + I PLGAG EVGRSCV + YKG T++FDCG+HPAYSG+ ALP FD +D +++DV LI
Sbjct: 104 DWVEITPLGAGCEVGRSCVIVRYKGVTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLI 163
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
THFHLDH +LPY + KT F GRVFMT T+ I KL+ DY ++S S
Sbjct: 164 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFS 211
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 94/152 (61%), Gaps = 16/152 (10%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D + + D LG NEVGRSC + YK + I+ D G+HP G+ +LP++DE D
Sbjct: 4 DEQNTDDSDDFKFFGLGGCNEVGRSCHVIEYKNRVIMLDAGVHPGLQGLNSLPFYDEYDL 63
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV----- 128
S +D+LLI+HFHLDHAASLPY ++ T F GRVFMTHATKAIY+ LL+D+VKV+ +
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHATKAIYRWLLSDFVKVTSIGGGGD 123
Query: 129 -----------SVEDMLFDEQDINRSMDRIEV 149
+ L+ + D+ RS DRIE
Sbjct: 124 PRMNNDDSSLNTSSGNLYTDDDLMRSFDRIET 155
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 3 STGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
ST P +L+ S D++ ++P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+
Sbjct: 11 STAAPAALR------SNAPDEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGL 64
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
+LP+FD I IDV+LITHFHLDH +LPYF +T+F GR+FMT ATKA YK+++ D+
Sbjct: 65 DSLPFFDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDF 124
Query: 123 VKVSKVSVEDMLFDEQDINRSMDRIE 148
+++ D++ E + ++DRIE
Sbjct: 125 LRIG-AGASDLVTSEW-LQSTIDRIE 148
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 3 STGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
ST P +L+ S D++ ++P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+
Sbjct: 11 STAAPAALR------SNAPDEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGL 64
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
+LP+FD I IDV+LITHFHLDH +LPYF +T+F GR+FMT ATKA YK+++ D+
Sbjct: 65 DSLPFFDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDF 124
Query: 123 VKVSKVSVEDMLFDEQDINRSMDRIE 148
+++ D++ E + ++DRIE
Sbjct: 125 LRIG-AGASDLVTSEW-LQSTIDRIE 148
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/109 (59%), Positives = 81/109 (74%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G H Y G+A+LP++D+ D S +DVLL
Sbjct: 23 ADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHAGYEGLASLPFYDDFDLSTVDVLL 82
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D ++V S
Sbjct: 83 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSIRVGGAS 131
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 92/130 (70%), Gaps = 10/130 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 78 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 137
Query: 139 DINRSMDRIE 148
DI +S DRIE
Sbjct: 138 DIMKSFDRIE 147
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 92/130 (70%), Gaps = 10/130 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDRIE 148
DI +S DRIE
Sbjct: 225 DIMKSFDRIE 234
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 80/100 (80%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHA 110
D GIHPAYSG AALP+FDE D S +D+LLITHFHLDHAA+LPY ++KT F GRVFMTH
Sbjct: 17 LDAGIHPAYSGFAALPFFDEFDLSTVDILLITHFHLDHAAALPYVMQKTNFRGRVFMTHP 76
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVC 150
TKA+ K LL+DYV+VS V VED L+DE+D+ + +R+E
Sbjct: 77 TKAVCKWLLSDYVRVSNVGVEDQLYDEKDLAAAFERMEAV 116
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 100/146 (68%), Gaps = 8/146 (5%)
Query: 3 STGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
ST P +L+ S D++ ++P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+
Sbjct: 11 STAVPATLR------SNVQDEVEVLPIGSGGEVGRSCVVVHYKGRGVMLDCGNHPAKSGL 64
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
+LP+FD I IDV+LITHFHLDH +LPYF +T+F GRVFMT ATKA YK+++ D+
Sbjct: 65 DSLPFFDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDF 124
Query: 123 VKVSKVSVEDMLFDEQDINRSMDRIE 148
+++ D++ E + ++DRIE
Sbjct: 125 LRIG-AGASDLVTSEW-LQSTIDRIE 148
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L+I LGAG EVGRSC + Y+G TI+ D GIHPAYSGMA+LP+ DE+D S +D LL+TH
Sbjct: 7 LSITLLGAGQEVGRSCCVLQYRGITIVCDAGIHPAYSGMASLPFVDELDWSTVDALLVTH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y +EKT F G+V+MTH TKA++K ++ DYV++S S D LF D+
Sbjct: 67 FHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDYVRMSS-SSSDALFTPLDM 125
Query: 141 NRSMDRI 147
+ S+ I
Sbjct: 126 SMSLSSI 132
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 80/108 (74%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + I PLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
THFHLDH +LPY + KT F GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFS 215
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 80/108 (74%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L I LG EVGRSC + YKGKT++ D G+H GM+A+PYFD+ D S +D+LLI
Sbjct: 23 DELVFIGLGGCQEVGRSCHILQYKGKTVMLDAGMHTGREGMSAMPYFDDFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFHLDHAA+LPY L KT F GRVFMTH TKAIYK L+ D V+VS S
Sbjct: 83 SHFHLDHAAALPYVLAKTDFKGRVFMTHPTKAIYKWLIQDSVRVSNTS 130
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 80/108 (74%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + I PLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
THFHLDH +LPY + KT F GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFS 215
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 80/108 (74%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + I PLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
THFHLDH +LPY + KT F GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFS 215
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L++ LGAG EVGRSC + Y+GKTI+ D G+HPAYSGMA+LP+ DE+D S +D +LITH
Sbjct: 7 LSVTLLGAGQEVGRSCCVLQYRGKTIVCDAGVHPAYSGMASLPFVDELDWSTVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y +EKT F G+V+MTH TKA++K ++ DYV++S S D LF ++
Sbjct: 67 FHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMSTSST-DALFSPLEM 125
Query: 141 NRSMDRI 147
S+ I
Sbjct: 126 TMSLSSI 132
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 90/131 (68%), Gaps = 11/131 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-----------LFDE 137
+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ + L+ +
Sbjct: 78 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSGDGSGGGEGSNLYTD 137
Query: 138 QDINRSMDRIE 148
DI +S DRIE
Sbjct: 138 DDIMKSFDRIE 148
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 10/137 (7%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DVP +L+I LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ DE+D
Sbjct: 3 DVP------KLSITLLGAGQEVGRSCCVLQYRGRTIVCDAGVHPAYSGIASLPFIDELDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DVLLITHFHLDHAA+L Y +EKT F G+V+MTH TKA++K ++ D+V++S S
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFKNGKGKVYMTHPTKALHKFMMQDFVRMSSSST 116
Query: 131 EDMLFDEQDINRSMDRI 147
D LF +++ S+ I
Sbjct: 117 -DTLFTPLEMSMSLASI 132
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S D++ ++P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+FD I ID
Sbjct: 20 SNAPDEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPFFDSIKCDEID 79
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
V+LITHFHLDH +LPYF +T+F GR+FMT ATKA YK+++ D++++ D++ E
Sbjct: 80 VVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIG-AGASDLVTSE 138
Query: 138 QDINRSMDRIE 148
+ ++DRIE
Sbjct: 139 W-LQSTIDRIE 148
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 90/131 (68%), Gaps = 11/131 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LL++HFH+DH
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDLSKVDILLVSHFHVDH 78
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-----------VEDMLFDE 137
+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ + L+ +
Sbjct: 79 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRTEGGGGNDEGGNLYTD 138
Query: 138 QDINRSMDRIE 148
DI +S DRIE
Sbjct: 139 DDIFKSFDRIE 149
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 94/153 (61%), Gaps = 18/153 (11%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITH---------------FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL 118
S +DVLLI+ FH+DHAASLPY L KT F GRVFMTH TKAIYK L
Sbjct: 75 STVDVLLISQTLHDASSLLLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWL 134
Query: 119 LTDYVKVSKVSVED--MLFDEQDINRSMDRIEV 149
+ D V+V + L+ EQD + +IE
Sbjct: 135 IQDSVRVGNTASNSATQLYTEQDHLNTFPQIEA 167
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 93/127 (73%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I LGAG EVGRSC + Y+GKTI+ D G+HPAYSG+A+LP+ DE+D S +DVLLITH
Sbjct: 7 IKITLLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYSGIASLPFVDELDWSTVDVLLITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D++++S S D LF D+
Sbjct: 67 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFMRMSS-STSDALFSPLDL 125
Query: 141 NRSMDRI 147
+ S+ I
Sbjct: 126 SMSLSSI 132
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 15/153 (9%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+ +D S E + LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFD
Sbjct: 1 MGEKDASFSNE-ESFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFD 59
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV- 128
E D S +D+LL++HFH+DH+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ +
Sbjct: 60 EYDLSKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIG 119
Query: 129 ----------SVED---MLFDEQDINRSMDRIE 148
S D ++ + DI +S DRIE
Sbjct: 120 NSRTEGGGSTSSNDEGGNIYTDDDIFKSFDRIE 152
>gi|146163951|ref|XP_001012725.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145850|gb|EAR92480.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 750
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/129 (51%), Positives = 89/129 (68%), Gaps = 5/129 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I PLGAG EVGRSC+ + YKGKTI+FDCG+H +G A+LPYFD I P ID++ ITH
Sbjct: 1 MVIYPLGAGQEVGRSCIILEYKGKTIMFDCGLHMGKNGHASLPYFDNIKPDQIDIIFITH 60
Query: 84 FHLDHAASLPYFLEKTTFSG---RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDH A+LPYF+ KT F G +V+ T T+AIY+ +L D + +++ L+ DI
Sbjct: 61 FHLDHCAALPYFIAKTDFDGKKQKVYATSPTRAIYRHVLRDSLTDKSENIK--LYTADDI 118
Query: 141 NRSMDRIEV 149
+SM+ I V
Sbjct: 119 EKSMEVINV 127
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 98/137 (71%), Gaps = 10/137 (7%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DVP +L I LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ D++D
Sbjct: 3 DVP------KLRITLLGAGQEVGRSCCVIQYRGRTIVCDAGVHPAYSGIASLPFIDDLDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DVLLITHFHLDHAA+L Y +EKT F G+V+MTH TKA++K ++ D+V++S S
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSTSSA 116
Query: 131 EDMLFDEQDINRSMDRI 147
D LF +++ S+ I
Sbjct: 117 -DTLFTPLEMSMSLASI 132
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 91/127 (71%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L++ LGAG EVGRSC + Y+G+TI+ D G+HPAY+G+A+LP+ DE+D S +D +LITH
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYNGIASLPFIDELDWSTVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ DYV++ S D LF D+
Sbjct: 67 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMGS-STSDALFSPLDM 125
Query: 141 NRSMDRI 147
S+ I
Sbjct: 126 TMSLASI 132
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 95/156 (60%), Gaps = 21/156 (13%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+D S E + LG NEVGRSC + YK K I+ D G+HPA SG A+ P+FDE D
Sbjct: 3 KDTEASNE-ESFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPFFDEYD 61
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE- 131
S +D+LLI+HFH+DH+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ +
Sbjct: 62 LSKVDILLISHFHVDHSASLPYVMQQSNFKGKVFMTHATKAIYRWLMQDFVRVTSIGNSR 121
Query: 132 -------------------DMLFDEQDINRSMDRIE 148
L+ + DI +S DRIE
Sbjct: 122 SEGGGTSATGASGSLNEEGGNLYTDDDIFKSFDRIE 157
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 90/127 (70%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L + LGAG EVGRSC + Y+GKT++ D G+HPAYSGMA+LP+ D++D S +D +L+TH
Sbjct: 7 LKVTMLGAGQEVGRSCCVLQYRGKTVVCDTGVHPAYSGMASLPFIDDLDWSTVDAILVTH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D+ ++S S D LF D+
Sbjct: 67 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDFARMSS-STSDALFSPLDM 125
Query: 141 NRSMDRI 147
S+ I
Sbjct: 126 QMSLASI 132
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 91/134 (67%), Gaps = 5/134 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + LTI LGAG EVGRSC + ++GK I+ D G+HPA G+ ALP+ DE+D S
Sbjct: 21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST 80
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVS--V 130
+D LLITHFH+DHAA+LPY +EKT F +G+V+MTHATKAIY L + D V+++ +
Sbjct: 81 VDALLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDT 140
Query: 131 EDMLFDEQDINRSM 144
L+DE D+ S
Sbjct: 141 SGRLYDEADVQSSW 154
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 95/137 (69%), Gaps = 10/137 (7%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DVP L I LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ DE+D
Sbjct: 4 DVPT------LNITLLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYSGIASLPFIDELDW 57
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DV+LITHFHLDHAA+L Y EKT F G+++MTH TKA++K ++ D+V++ S
Sbjct: 58 STVDVILITHFHLDHAAALTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRMGS-SS 116
Query: 131 EDMLFDEQDINRSMDRI 147
D LF +++ S+ I
Sbjct: 117 SDALFSPMELSVSLASI 133
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L+I LGAG EVGRSC + Y KTI+ D G+HPA+SGMA+LP+ DE+D S +D +LITH
Sbjct: 7 LSITMLGAGQEVGRSCCVLQYHDKTIVLDAGVHPAHSGMASLPFVDELDWSTVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y +EKT F G+V+MTH TKA++K ++ D+V++S S D L D+
Sbjct: 67 FHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSNSST-DALISPLDL 125
Query: 141 NRSMDRI 147
+ S+ I
Sbjct: 126 SMSISSI 132
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 92/128 (71%), Gaps = 4/128 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
QL++ LGAG EVGRSC + Y+GKT++ D G+HPA+ G+A+LP+ DE+D S +DV+LIT
Sbjct: 5 QLSVTVLGAGQEVGRSCCVLRYRGKTVVCDAGVHPAHYGIASLPFIDELDWSTVDVILIT 64
Query: 83 HFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAA L Y +EKT F G+V+MT ATKA+YK ++ D++++S S E LF D
Sbjct: 65 HFHLDHAAGLTYIMEKTNFREGKGKVYMTLATKAVYKFIMQDFLRMSSSSTEP-LFSPLD 123
Query: 140 INRSMDRI 147
+ S I
Sbjct: 124 FSMSFSSI 131
>gi|297739607|emb|CBI29789.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 77/97 (79%), Gaps = 2/97 (2%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASTG SLKR D ++R GDQL I PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASL-PYFL 96
MAALPYFDEIDPS IDVLL+T F D L P+ L
Sbjct: 60 VMAALPYFDEIDPSTIDVLLVTQFDWDQLQVLHPHLL 96
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 91/133 (68%), Gaps = 5/133 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + LTI LGAG EVGRSC + ++GK I+ D G+HPA G+ ALP+ DE+D S
Sbjct: 21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST 80
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVS--V 130
+D +LITHFH+DHAA+LPY +EKT F +G+V+MTHATKAIY L + D V+++ +
Sbjct: 81 VDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDT 140
Query: 131 EDMLFDEQDINRS 143
L+DE D+ S
Sbjct: 141 SGRLYDEADVQSS 153
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 5/134 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + LTI LGAG EVGRSC + ++GK I+ D G+HPA G+ ALP+ DE+D S
Sbjct: 21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST 80
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVS--V 130
+D +LITHFH+DHAA+LPY +EKT F +G+V+MTHATKAIY L + D V+++ +
Sbjct: 81 VDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDT 140
Query: 131 EDMLFDEQDINRSM 144
L+DE D+ S
Sbjct: 141 SGRLYDEADVQSSW 154
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 90/128 (70%), Gaps = 4/128 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
L I LGAG EVGRSC + Y+G+TI+ D GIHPA++GMA+LP+ D++D S +D +LIT
Sbjct: 6 NLKITMLGAGQEVGRSCCVLQYRGRTIVCDTGIHPAHTGMASLPFIDDLDWSTVDAILIT 65
Query: 83 HFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAASL Y EKT F G+++MTH TKA++K ++ D+V+ S D LF D
Sbjct: 66 HFHLDHAASLTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRTGS-SSSDALFSPLD 124
Query: 140 INRSMDRI 147
I+ S+ I
Sbjct: 125 ISMSLASI 132
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 13/144 (9%)
Query: 7 PPSLKRR--DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
PP + + D+P L I LGAG EVGRSC + ++GK I+ D G+HPA+ GM +
Sbjct: 12 PPQIPQEGEDIP------SLKITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAHPGMGS 65
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTD 121
LP+ DE+D S +D +LITHFH+DHAA+LPY +E+T F +G+V+MTHATKAIY L + D
Sbjct: 66 LPFIDEVDWSTVDAILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYGLTMMD 125
Query: 122 YVKVSKVSVEDM--LFDEQDINRS 143
V++S + ++ L+ E D+ S
Sbjct: 126 AVRISDQNADNAGRLYTEADVQSS 149
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
E D+LTI+PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D D
Sbjct: 8 EESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTD 67
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS--VEDMLF 135
++LI+HFHLDH LP+ L KT + +MTHATKAIY+ LL D+V+VS + +L+
Sbjct: 68 LILISHFHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLY 127
Query: 136 DEQDINRSMDRIE 148
++DI S+D I+
Sbjct: 128 SDRDIVASLDHID 140
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
E D+LTI+PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D D
Sbjct: 8 EESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTD 67
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS--VEDMLF 135
++LI+HFHLDH LP+ L KT + +MTHATKAIY+ LL D+V+VS + +L+
Sbjct: 68 LILISHFHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLY 127
Query: 136 DEQDINRSMDRIE 148
++DI S+D I+
Sbjct: 128 SDRDIVASLDHID 140
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 92/162 (56%), Gaps = 34/162 (20%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 TH-------------------------------FHLDHAASLPYFLEKTTFSGRVFMTHA 110
+H FH+DHAASLPY L KT F GRVFMTH
Sbjct: 83 SHPVQDTTALYCHGQYCACVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHP 142
Query: 111 TKAIYKLLLTDYVKVSKVS---VEDMLFDEQDINRSMDRIEV 149
TKAIYK L+ D V+V S ++ EQD + +IE
Sbjct: 143 TKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEA 184
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 92/127 (72%), Gaps = 4/127 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L++ LGAG EVGRSC + Y+GKT++ D G HPA++GM+ALP+ D++D S +D +L+TH
Sbjct: 7 LSVTMLGAGQEVGRSCCVIQYRGKTVVCDAGTHPAHNGMSALPFIDDLDWSTVDAILVTH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FH+DHAASL Y +EKT F G+V+MTH TK +Y+ L+ D++++S S D LF ++
Sbjct: 67 FHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQDFMRISSTST-DGLFTSVEL 125
Query: 141 NRSMDRI 147
+ S+ I
Sbjct: 126 SMSLASI 132
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 95/175 (54%), Gaps = 40/175 (22%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITH-------------------------------------FHLDHAASLPYFL 96
S +DVLLI+H FH+DHAASLPY L
Sbjct: 75 STVDVLLISHEGKRACSIYLHSDARHVCAPKQCLFICLSPLLTRGDSFHIDHAASLPYVL 134
Query: 97 EKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQDINRSMDRIEV 149
KT F GRVFMTH TKAIYK L+ D V+V + L+ EQD + +IE
Sbjct: 135 AKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTASNSATQLYTEQDHLNTFPQIEA 189
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/135 (48%), Positives = 90/135 (66%), Gaps = 3/135 (2%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDP- 73
++ + +L I PLGAGNEVGRSC+ + ++ K I+FDCGIH G+ ALPYF++ID
Sbjct: 1 MNSDNSKLIITPLGAGNEVGRSCILLQFQEKQIMFDCGIHMNKENKGVMALPYFNKIDKI 60
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
ID++LITHFHLDH +LPYFL+ F G+++MT TK IY L+L D +KV
Sbjct: 61 EDIDLILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQD 120
Query: 134 LFDEQDINRSMDRIE 148
L +EQ I +S+ I+
Sbjct: 121 LINEQSIEQSLKNID 135
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 91/157 (57%), Gaps = 29/157 (18%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 TH--------------------------FHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
+ FH+DHAASLPY L KT F GRVFMTH TKAIY
Sbjct: 83 SQTASYCVVLSRPVSCSRDDDIHDFAFFFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIY 142
Query: 116 KLLLTDYVKVSKVS---VEDMLFDEQDINRSMDRIEV 149
K L+ D V+V S ++ EQD + +IE
Sbjct: 143 KWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEA 179
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 83/107 (77%), Gaps = 3/107 (2%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L+I LGAG EVGRSC + + G T++ D G+HPA+ GMAALP+ D++D S +D LLIT
Sbjct: 9 KLSITLLGAGQEVGRSCCVIQHAGITVVCDAGVHPAFHGMAALPFIDDLDWSTVDALLIT 68
Query: 83 HFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVS 126
HFHLDHAASL Y +EKT F G+V+MTH TKA+Y+L++ DYV++S
Sbjct: 69 HFHLDHAASLTYIMEKTNFKDGKGKVYMTHPTKAVYRLMMQDYVRMS 115
>gi|76156582|gb|AAX27764.2| SJCHGC03746 protein [Schistosoma japonicum]
Length = 251
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/132 (50%), Positives = 91/132 (68%), Gaps = 3/132 (2%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+LTI+PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D + D+
Sbjct: 10 ESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQSTDL 69
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV--EDMLFD 136
+LI+HFHLDH LP+ L KT + +MTHATKAIY+ LL D+V+VS + L+
Sbjct: 70 VLISHFHLDHCGGLPHLLLKTGAKLKCYMTHATKAIYRYLLADFVRVSNSGGLPDQALYS 129
Query: 137 EQDINRSMDRIE 148
++DI S+D IE
Sbjct: 130 DRDIVASLDHIE 141
>gi|422295773|gb|EKU23072.1| cleavage and polyadenylation specificity factor subunit 3
[Nannochloropsis gaditana CCMP526]
Length = 182
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 17/149 (11%)
Query: 18 SREGDQLTI--IPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-IDPS 74
S E D+ T+ PLGA EVGRSC+ + YKG+TI+ DCGIHP +G ALP+FD D
Sbjct: 15 SNEEDEDTVYFTPLGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFDSGPDAE 74
Query: 75 AIDVLLITHFHLDHAASLPYFLEKT---TFSGRVFMTHATKAIYKLLLTDYVKVSKVSV- 130
ID++LI+HFHLDHAASLPYF EK F GR+F TH TKAI +L+L ++++ V +
Sbjct: 75 EIDIILISHFHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLA 134
Query: 131 ----------EDMLFDEQDINRSMDRIEV 149
E L+ E+++ +D+IEV
Sbjct: 135 ADGTSADEGAEAPLYTEEELQACLDKIEV 163
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 92/136 (67%), Gaps = 12/136 (8%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L++ LGAG EVGRSC + Y+GKT++ D G+HPAY+GMA+LP+ D++D S++D +LITH
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAYNGMASLPFIDDLDWSSVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKV---------SVE 131
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D+V+ + +
Sbjct: 67 FHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRALSVKCPHSSASS 126
Query: 132 DMLFDEQDINRSMDRI 147
D LF D+ S+ I
Sbjct: 127 DALFSPLDMQMSLASI 142
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 3/129 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I LGAG EVGRSCVY+ + ++FDCG+HPA SG+ ALP F+ +D S + V L+
Sbjct: 3 DRVRITVLGAGCEVGRSCVYVERENSCLMFDCGLHPALSGVGALPVFEAVDISKVQVCLV 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH ++PY L KT F+GR+ MT ATK+I LL TDY ++ ++ +F++ D
Sbjct: 63 THFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFNDDD-- 120
Query: 142 RSMDRIEVC 150
SMD + VC
Sbjct: 121 ESMDEL-VC 128
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 92/136 (67%), Gaps = 12/136 (8%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L++ LGAG EVGRSC + Y+GKT++ D G+HPA++GMA+LP+ D++D S++D +LITH
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAHNGMASLPFIDDLDWSSVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSV---------E 131
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D+V+ + +
Sbjct: 67 FHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRANFVKCPHSSASS 126
Query: 132 DMLFDEQDINRSMDRI 147
D LF D+ S+ I
Sbjct: 127 DALFSPLDMQMSLASI 142
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 79/112 (70%)
Query: 25 TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHF 84
I LGAG EVGRSCV+ ++FDCG+HPA SG+ ALP F+ ID S +D+ LITHF
Sbjct: 19 NITVLGAGCEVGRSCVFAERGKHNVMFDCGLHPALSGVGALPVFEAIDLSKVDLCLITHF 78
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
HLDH ++PY L KT+F GR+FMT+ATKAI LL TDY ++ ++ +FD
Sbjct: 79 HLDHCGAVPYLLSKTSFKGRIFMTYATKAICHLLWTDYARMEQLQTVKSIFD 130
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LGAG EVGRSCVY ++FDCG+HPA SG+ ALP F+ +D + ++V L+THFH
Sbjct: 15 ITVLGAGCEVGRSCVYAERGNSCVMFDCGLHPALSGVGALPVFEAVDITKVEVCLVTHFH 74
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
LDH ++PY L KT F GR+FMT ATKAI LL TDY ++ ++ +FD+ D
Sbjct: 75 LDHCGAIPYLLSKTKFRGRIFMTSATKAICHLLWTDYARMEQLHSVKKIFDQPD 128
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 80/107 (74%), Gaps = 6/107 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F+GRVFMTH
Sbjct: 1 MLDAGIHPAYQGMASLPFYDDFDLSTVDVLLISHFHLDHAASLPYVMQKTNFNGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINRSMDRIEVC 150
TKAIY+ LL D+V+V+ + V E+ L+ +D+ S D+IE
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGVNSPLDREENLYTNEDLVESFDKIETV 107
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ D G+HPAYSG+AALP++DE D S +D+LLI+HFHLDHAASLPY ++ T F GRVFMTH
Sbjct: 1 MLDAGVHPAYSGIAALPFYDEFDLSTVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDM--LFDEQDINRSMDRIE 148
TKAIY+ LL+D+VKV+ + L+ ++D++ S DRIE
Sbjct: 61 PTKAIYRWLLSDFVKVTSIGSSSSSALYTDEDLSESFDRIE 101
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 16/143 (11%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I LGAG EVGRSCVY+ ++FDCG+HPA SG+ ALP F+ +D S ++V L+
Sbjct: 3 DRVRITVLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDISKVEVCLV 62
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE---- 137
THFHLDH ++PY L KT F+GR+ MT ATK+I LL TDY ++ ++ +FD+
Sbjct: 63 THFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDDGM 122
Query: 138 ------------QDINRSMDRIE 148
+D+ ++DRIE
Sbjct: 123 DELVCGSGLYSFEDVEYALDRIE 145
>gi|82596170|ref|XP_726151.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii 17XNL]
gi|23481438|gb|EAA17716.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii]
Length = 942
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/104 (53%), Positives = 74/104 (71%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S IDV LITH
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKIDVCLITH 63
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FH+DH+ +LPY + KT F GRVFMT ATK+I LL +DY ++ K
Sbjct: 64 FHMDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEK 107
>gi|68076685|ref|XP_680262.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
berghei strain ANKA]
gi|56501171|emb|CAH99756.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium berghei]
Length = 888
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 56/104 (53%), Positives = 73/104 (70%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S IDV LITH
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKIDVCLITH 63
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FH+DH+ +LPY + KT F GRVFMT ATK I LL +DY ++ K
Sbjct: 64 FHMDHSGALPYLINKTRFKGRVFMTEATKGICYLLWSDYARIEK 107
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYV
Sbjct: 1 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 60
Query: 124 KVSKVSVEDMLFDEQDINRSMDRIE 148
KVS +S +DML+ E D+ SMD+IE
Sbjct: 61 KVSNISADDMLYTETDLEESMDKIE 85
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 86/127 (67%), Gaps = 13/127 (10%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L I LGAG E Y+GKTI+ D G+HPAYSG+A+LP+ DE+D S +DVLLITH
Sbjct: 7 LKITLLGAGQE---------YRGKTIVCDAGVHPAYSGIASLPFVDELDWSTVDVLLITH 57
Query: 84 FHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F G+V+MTH TKA++K ++ D+V++S S D LF DI
Sbjct: 58 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSS-STSDALFSPLDI 116
Query: 141 NRSMDRI 147
S+ I
Sbjct: 117 QMSLSSI 123
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 8/109 (7%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVC 150
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S D+IE
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETV 109
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 8/109 (7%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVC 150
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S D+IE
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETV 109
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 8/109 (7%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVC 150
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S D+IE
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETV 109
>gi|70945220|ref|XP_742453.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
chabaudi chabaudi]
gi|56521446|emb|CAH74696.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 564
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 74/104 (71%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S +DV LITH
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKVDVCLITH 63
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FH+DH+ +LPY + KT F GRVFMT ATK+I LL +DY ++ K
Sbjct: 64 FHMDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEK 107
>gi|359490166|ref|XP_003634046.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase
GSO1-like [Vitis vinifera]
Length = 1265
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/88 (68%), Positives = 68/88 (77%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+LKR + ++REG QL I LG GNE+G SC Y SYKGKTILFD GI P Y+G ALPYF
Sbjct: 971 TLKRLNSSLTREGIQLIITHLGTGNEMGCSCAYTSYKGKTILFDSGILPTYTGTVALPYF 1030
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFL 96
DEID S IDVLL+ FHLDHAASLPY+L
Sbjct: 1031 DEIDLSTIDVLLVIPFHLDHAASLPYYL 1058
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 87/168 (51%), Gaps = 50/168 (29%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 TH----------------------------------------------FHLDHAASLPYF 95
+ FH+DH+++LPY
Sbjct: 83 SQYVGQSLFCVPLVTLPTPSPLSKLGLFMAVDSIPHHISPWFPSMVADFHVDHSSALPYV 142
Query: 96 LEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQD 139
L KT F GRVFMTHATKAIYK L+ D V+VS + L+ EQD
Sbjct: 143 LSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQD 190
>gi|148702077|gb|EDL34024.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Mus musculus]
Length = 261
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 71/86 (82%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYV
Sbjct: 2 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 61
Query: 124 KVSKVSVEDMLFDEQDINRSMDRIEV 149
KVS +S +DML+ E D+ SMD+IE
Sbjct: 62 KVSNISADDMLYTETDLEESMDKIET 87
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 77/115 (66%)
Query: 25 TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHF 84
TI LGAG EVGRSCV+ ++FDCG+HPA SG+ ALP F+ +D + + V L+THF
Sbjct: 15 TITVLGAGCEVGRSCVFAERGNDCVMFDCGLHPALSGVGALPVFEAVDITKVKVCLVTHF 74
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HLDH ++PY L KT F G++ MT ATKAI LL TDY ++ ++ +FD D
Sbjct: 75 HLDHCGAIPYLLSKTGFKGKILMTCATKAICHLLWTDYARMEQLCSVKKIFDHTD 129
>gi|124809291|ref|XP_001348538.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|23497434|gb|AAN36977.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 876
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 72/104 (69%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG +EVGRSCV + +++ DCGIHPA+ G+ LP +D D S +D+ LITH
Sbjct: 4 INIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLITH 63
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FH+DH+ +LPY + KT F GR+FMT ATK+I LL DY ++ K
Sbjct: 64 FHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEK 107
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 5/133 (3%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKL--LLTDYVKVSKVSVEDMLF 135
+LLI+ FHLD FL K+++ ++ +K L K S +S +DML+
Sbjct: 66 LLLISQFHLDSHNLYSIFLRKSSW---IYHPQTSKTXKNLNSFCWHLSKFSNISADDMLY 122
Query: 136 DEQDINRSMDRIE 148
E D+ SMD+IE
Sbjct: 123 TETDLEESMDKIE 135
>gi|389585470|dbj|GAB68201.1| cleavage and polyadenylation specifity factor protein, partial
[Plasmodium cynomolgi strain B]
Length = 936
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I+ LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T F G+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|221059687|ref|XP_002260489.1| cleavage and polyadenylation specifity protein [Plasmodium knowlesi
strain H]
gi|193810562|emb|CAQ41756.1| cleavage and polyadenylation specifity protein,putative [Plasmodium
knowlesi strain H]
Length = 938
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I+ LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T F G+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLINRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|156100557|ref|XP_001616006.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148804880|gb|EDL46279.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 934
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I+ LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T F G+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|156092661|ref|XP_001612477.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148801279|gb|EDL42684.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 858
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I+ LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T F G+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|156091217|ref|XP_001612356.1| cleavage and polyadenylation specifity factor protein, truncated
[Plasmodium vivax Sal-1]
gi|148801158|gb|EDL42563.1| cleavage and polyadenylation specifity factor protein, putative,
truncated [Plasmodium vivax]
Length = 289
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I+ LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T F G+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 74/104 (71%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ ++ LGAG EVGRSCV + ++GK ++FDCG+HPA SG+ ALP F+ I +++ L+TH
Sbjct: 1 MKVVVLGAGCEVGRSCVILEHEGKQVMFDCGLHPALSGVGALPVFEAISIEKVNLCLVTH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
FHLDH ++PY + KT+F G + MT T+ I +L+ DY K+ K
Sbjct: 61 FHLDHCGAVPYLVGKTSFKGTIVMTEPTRVICRLMWADYEKMGK 104
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ +IPLGAG ++G+SC+ ++ K KTI+FDCGIH Y+ LP FD + + +D+
Sbjct: 1 MHVIPLGAGQDIGKSCIVVTIKNKTIMFDCGIHLGYNDSRKLPNFDYFNENHHGRRPVDI 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV--SKVSVEDMLFD 136
++I+HFH+DH SLPYF+E T F+G +FMTH TKA ++L D K+ +K +E L+
Sbjct: 61 IVISHFHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPLYT 120
Query: 137 EQDINRSMDRI 147
+ IN + ++
Sbjct: 121 TEQINNCLSKV 131
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 72/103 (69%), Gaps = 4/103 (3%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHA 110
D G+HPA G AALP+FD+ D S++D+LLI+HFHLDH+A LPY L KT F GRVFMTHA
Sbjct: 56 LDAGMHPAKEGFAALPFFDDFDLSSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHA 115
Query: 111 TKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDRIEV 149
TKAIYK L+ D V+VS S L+ E++ ++ +IE
Sbjct: 116 TKAIYKWLIQDNVRVSNTSSSSDQRTTLYTEEEHLSTLPQIEA 158
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ +IPLGAG +VGRSC+ + +G+TI+ DCG+H Y+ P F I ID
Sbjct: 1 MHVIPLGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFH+DH +LPYF E + G ++MTH TKAI ++LL D K+++ + + M ++++
Sbjct: 61 IIISHFHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLEDTRKIARKNNDKMTYNKE 120
Query: 139 DINRSMDRI 147
DI M ++
Sbjct: 121 DIENCMKKV 129
>gi|147812512|emb|CAN72773.1| hypothetical protein VITISV_015942 [Vitis vinifera]
Length = 986
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 56/67 (83%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G GNE+GRSCVY SYKGKTILFDCG+ P Y+G ALPYFDEIDPS IDVLL+ F LDHA
Sbjct: 527 GIGNEMGRSCVYTSYKGKTILFDCGVLPGYTGTVALPYFDEIDPSTIDVLLVIPFQLDHA 586
Query: 90 ASLPYFL 96
ASLP +L
Sbjct: 587 ASLPSYL 593
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 87/150 (58%), Gaps = 20/150 (13%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHF-----------HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
S +D+LLI+ + + D A + + +K RVFMTHATKAIYK L+ D
Sbjct: 75 STVDILLISQYVELFILFYHVLNFDLGADILDWRDKR----RVFMTHATKAIYKWLIQDN 130
Query: 123 VKVSKVSVED----MLFDEQDINRSMDRIE 148
V+VS S L+ EQD ++ +IE
Sbjct: 131 VRVSNTSSSSDQRTTLYTEQDHLSTLSQIE 160
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+TH+H+DH ASLPY + + F G+V MT TK I+ L ++ ++S + ++
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNPKE 137
Query: 140 INRSMDRIE 148
+ MDRI+
Sbjct: 138 V---MDRID 143
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+TH+H+DH ASLPY + + F G+V MT TK I+ L ++ ++S + ++
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNPKE 137
Query: 140 INRSMDRIE 148
+ MDRI+
Sbjct: 138 V---MDRID 143
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
MA+LP++DE D +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D
Sbjct: 1 MASLPFYDEFDLGTVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLND 60
Query: 122 YVKVSKVSVE-DMLFDEQDINRSMDRIEVC 150
+V+V+ + + + L+ ++D+ S DRIE
Sbjct: 61 FVRVTAIDDDSNQLYSDKDLKDSFDRIETI 90
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 8/139 (5%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ + PLGAG +VG+SC+ ++ GK I+ DCG+HP Y+ P F I ID
Sbjct: 2 QIKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLID 61
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS--KVSVEDM-L 134
+++I+HFHLDH SLPYF E + G ++ TH TKAI +LL DY K+S + VE+ +
Sbjct: 62 LVIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLEDYRKISVERRGVEEKDM 121
Query: 135 FDEQDINRSMDRIEVCFLS 153
F Q I M ++ C L
Sbjct: 122 FSSQQIKDCMMKVTPCALE 140
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ + PLGAG +VGRSC+ +S GK I+FDCG+H Y P F+ I S AID
Sbjct: 3 IKVTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAIDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++ITHFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ + E F
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 122
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 123 QMIKDCMKKV 132
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+TH+H+DH ASLPY + + F G+V MT TK I+ L ++ ++S
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMS 124
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 83/137 (60%), Gaps = 5/137 (3%)
Query: 15 VPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
+P+ D + ++PLGAG +VGRSCV ++ G+TI+FDCG+H Y+ P F ++
Sbjct: 1 MPLLFASDDIRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQG 60
Query: 75 A----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVS 129
ID+ +ITHFHLDH +LPYF E+ + G ++MT T+AI ++LL DY K++
Sbjct: 61 PLTDHIDLAIITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLEDYRKIAVSRQ 120
Query: 130 VEDMLFDEQDINRSMDR 146
E F DI +++
Sbjct: 121 GEKNFFTRDDIKTCLNK 137
>gi|430813250|emb|CCJ29378.1| unnamed protein product [Pneumocystis jirovecii]
Length = 124
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L LGAGNEVGRSC + KGKT++ D G+HPAY+G+AALP++DEID S +D+LLI+H
Sbjct: 20 LEFTNLGAGNEVGRSCHVIHIKGKTVMLDAGVHPAYNGIAALPFYDEIDMSTVDILLISH 79
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
FH+DH ASLPY + K VF A KAI L++ D K + S+ D
Sbjct: 80 FHVDHVASLPYVMTK------VF---ACKAIILLIVLD--KFQRKSIYD 117
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ IIPLGAG +VGRSC+ ++ +G+TI+ DCG+H Y+ P F + + ID
Sbjct: 1 MKIIPLGAGQDVGRSCIIVNIEGRTIMLDCGMHMGYNDQRRFPDFSALSKTGDFNKLIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLFDE 137
++I+HFHLDH +LP+F E + G ++MT TKA+ +LL D+ K+S D F
Sbjct: 61 IIISHFHLDHTGALPFFTEICKYDGPIYMTKPTKAVIPILLEDFRKISAPKSSDGKFFSY 120
Query: 138 QDINRSMDRI 147
QDI + +I
Sbjct: 121 QDIQNCLKKI 130
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ +IPLGAG +VGRSC+ +S KG+TI+FDCG+H ++ P F I + ID
Sbjct: 1 MNVIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFHLDH +LPYF E + G ++MT TK + +LL D+ K+ D +F Q
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIV-AGKGDSIFTYQ 119
Query: 139 DINRSMDRI 147
DI+ M ++
Sbjct: 120 DISNCMKKV 128
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 66/96 (68%), Gaps = 8/96 (8%)
Query: 11 KRRDVPV------SREGD--QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
+RR P EGD L++ LGAG EVGRSC + ++GKTI+ D G+HPAY G+
Sbjct: 6 RRRQAPAPVQVIADPEGDAPSLSVTMLGAGQEVGRSCCVIQHRGKTIVCDAGLHPAYPGL 65
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98
LP+ DE+D S +D +LITHFH+DHAA+LPY +EK
Sbjct: 66 GGLPFIDELDWSTVDAILITHFHVDHAAALPYIMEK 101
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA------I 76
++ ++PLGAG +VGRSC+ ++ GK I+ DCG+H ++ PYFD I I
Sbjct: 3 EIKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHI 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
D ++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 DCVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVDRKGETNFF 122
Query: 136 DEQDINRSMDRI 147
D + I M ++
Sbjct: 123 DSKMIKDCMKKV 134
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 5/133 (3%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF----DEIDPSAI 76
D + ++PLGAG +VGRSC+ + G+TI+FDCG+H Y+ P F D S I
Sbjct: 35 ADGIVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLADGDLTSRI 94
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
DV++I+HFHLDH +LP+F E + ++MT+ TKAI LLL DY K+S + E F
Sbjct: 95 DVVIISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLEDYRKISVERKGERNFF 154
Query: 136 DEQDINRSMDRIE 148
Q I M +++
Sbjct: 155 TSQMIKDCMSKVQ 167
>gi|340053150|emb|CCC47437.1| putative cleavage and polyadenylation specificity factor,
fragment [Trypanosoma vivax Y486]
Length = 584
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 60/75 (80%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I+P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I+ ID++LI
Sbjct: 20 DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSINCGEIDLVLI 79
Query: 82 THFHLDHAASLPYFL 96
THFHLDH +LPYF
Sbjct: 80 THFHLDHCGALPYFW 94
>gi|449686516|ref|XP_002164154.2| PREDICTED: integrator complex subunit 11-like [Hydra
magnipapillata]
Length = 526
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++PLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I + ID
Sbjct: 4 IKVVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGYNDERKFPDFTYIAKTGPYTPHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDE 137
L+I+HFHLDH +LPYF E + G ++MTH TKAI +LL D+ K+ D F
Sbjct: 64 LIISHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDFRKIQVERKGDSDFFTS 123
Query: 138 QDINRSMDRIEVCFLSCCL 156
Q+I M ++ L C+
Sbjct: 124 QNIKDCMKKVIPVNLHQCV 142
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++ LGAG E+GRSC+ ++ KTI+FDCG+H YS P F + + +D
Sbjct: 1 MNVLALGAGQEIGRSCIVVNINNKTIMFDCGMHMGYSDSRKFPDFQALSKTGNFDKIVDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDE 137
+LI+HFHLDH +LPYF E + G ++MT+ TKA+ +LL D K+ S S + ++
Sbjct: 61 ILISHFHLDHCGALPYFTEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIYSF 120
Query: 138 QDINRSMDRI 147
+DI + M++I
Sbjct: 121 EDIKKCMEKI 130
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAID 77
++ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 3 EIKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFT 122
Query: 137 EQDINRSMDRIEVCFL 152
Q I + ++ L
Sbjct: 123 SQMIKDCIKKVTAVTL 138
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+++ PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I+HFHLDH +LPY E ++G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++PLGAG +VGRSCV ++ G+TI+FDCG+H ++ P F I + AID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFHLDH +LPYF E ++G V+MT TK + +LL D+ K+ + D +F Q
Sbjct: 61 VVISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEVCPVLLDDFRKIVE-GKGDSIFTYQ 119
Query: 139 DINRSMDRI 147
DI M ++
Sbjct: 120 DILNCMKKV 128
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++PLGAG +VGRSC+ ++ G+T++FDCG+H ++ P F I + ID
Sbjct: 1 MNVVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFHLDH +LPYF E +SG ++MT TK + +LL D+ K+ D +F Q
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKIVG-GKGDSIFSYQ 119
Query: 139 DINRSMDRI 147
DI+ M ++
Sbjct: 120 DISNCMKKV 128
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVL 79
G L I PLGAG EVGRSC + Y G I+ DCG+HPA G ALP F+ D +I++L
Sbjct: 18 GSVLEIKPLGAGREVGRSCFVLKYMGHNIMLDCGVHPAKKHGEDALPLFEYGDVDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+THFH+DH A+LPY + + + G++ MT TK I+ L ++ ++S
Sbjct: 78 CVTHFHVDHCAALPYLVLERNYKGKILMTPPTKEIFGELFKEFHQMS 124
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+++ PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I HFHLDH +LPY E ++G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ +IPLGAG +VGRSC+ ++ GK I+FDCG+H Y+ P F I +D
Sbjct: 4 IRVIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYLDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ D F
Sbjct: 64 VIISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVERRGDQNFFTS 123
Query: 139 D-INRSMDRIEVCFL 152
D I R M ++ ++
Sbjct: 124 DMIYRCMTKVRCVYI 138
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA------ID 77
+ I+PLGAG +VGRSC+ +S GK I+FDCG+H Y+ P F I + I+
Sbjct: 4 IRIVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDYIN 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++++HFHLDH +LPYF E ++G ++MTH TKAI +LL D+ +V E F
Sbjct: 64 CVILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVDKKGEQNFFT 123
Query: 137 EQDINRSMDRIEVCFLSCCL 156
Q I M ++ L C+
Sbjct: 124 SQMIKDCMRKVITVNLHQCV 143
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ ++PLGAG +VGRSC+ ++ K I+FDCG+H Y+ P F I S +D
Sbjct: 3 EIKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVDRKGEKNFFT 122
Query: 137 EQDINRSMDRIEVCFL 152
Q I M +++ L
Sbjct: 123 SQMIKDCMKKVKAINL 138
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I S ID
Sbjct: 4 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDE 137
++I+HFHLDH +LPY E +SG ++MTH TKAI +LL D KVS D F
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKVSVEKKGDQNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 6/135 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++PLGAG +VGRSCV ++ G+TI+FDCG+H ++ P F I + ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+HFHLDH +LPYF E ++G ++MT TK + +LL D+ K+ D +F Q
Sbjct: 61 VIISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEVCPVLLDDFRKIVGAK-GDNIFSYQ 119
Query: 139 DINRSMDRIEVCFLS 153
DI M ++ +S
Sbjct: 120 DIVNCMKKVTTISMS 134
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----IDVL 79
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I A ID +
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISEGAATDHIDCV 63
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 138
+I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 64 IISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQ 123
Query: 139 DINRSMDRI 147
I + ++
Sbjct: 124 MIKDCIKKV 132
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I+ +D
Sbjct: 4 IRVVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LPY E F G ++MTH TKAI +LL DY K++
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKIT 111
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I+PLGAG +VGRSC+ ++ GK I+ DCG+H Y P F I +D
Sbjct: 7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 126
Query: 137 EQDINRSMDRIEVCFL 152
DI M ++ C L
Sbjct: 127 SDDIKNCMKKVVGCAL 142
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I+HFHLDH +LPYF E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA--IDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P+ ID
Sbjct: 4 IKITPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPYF E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 4 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 123
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 124 SQMIKDCMKKV 134
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDV 78
+ I PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D KV+ + E F
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+++ PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LPY E +SG V+MTH TKAI +LL D+ K++
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKIT 111
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+++ PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LPY E +SG V+MTH TKAI +LL D+ K++
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKIT 111
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 78/133 (58%), Gaps = 9/133 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----AIDVL 79
+ + LGAG ++GRSCV ++ + +TI+FDCG+H +S P F + P ID +
Sbjct: 1 MKVTVLGAGQDIGRSCVVVTIQNRTIMFDCGMHMGHSDYRRFPDFKLLGPGPYTGVIDCV 60
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDML 134
+ITHFH+DH LPYF E+ +SG ++MT TKA+ ++L DY KV +
Sbjct: 61 IITHFHMDHCGGLPYFTERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKFQHPT 120
Query: 135 FDEQDINRSMDRI 147
++E++I M +I
Sbjct: 121 YNEENIKNCMKKI 133
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++PLGAG +VGRSCV +S K I+FDCG+H Y P F I + +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTLDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++ITHFHLDH +LPYF E + G ++MT TKAI +LL DY K+S
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKIS 110
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
L I+PLGAG +VGRSC+ ++ GK ++ DCG+H Y P F I +D
Sbjct: 10 HLKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 69
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI ++LL DY KV + E F
Sbjct: 70 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFT 129
Query: 137 EQDINRSMDRIEVCFL 152
DI M + C L
Sbjct: 130 SDDIKNCMKKCIGCAL 145
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ ++PLGAG +VGRSCV +S GK I+FDCG+H Y+ P F I + +D
Sbjct: 3 EIKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E F G ++MT TKAI +LL DY K++ + E F
Sbjct: 63 CVIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKITVEKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I+PLGAG +VGRSC+ ++ GK I+ DCG+H Y P F I +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGESNFFTS 127
Query: 138 QDINRSMDRIEVCFL 152
DI M ++ C L
Sbjct: 128 DDIKNCMKKVIGCAL 142
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++TI PLGAG +VGRSC+ +S GK I+ DCG+H Y P F I+ +D
Sbjct: 3 EITITPLGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LP+ E ++G ++MTH TKAI +LL D+ K+ E F
Sbjct: 63 CVIISHFHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVDKKGEQNFFS 122
Query: 137 EQDINRSMDRIEVCFL 152
+ I M ++ C L
Sbjct: 123 QGMIRDCMKKVIPCNL 138
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ +IPLGAG +VGRSCV ++ K I+FDCG+H YS P F I S ID
Sbjct: 8 IRVIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDC 67
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK-VSKVSVEDMLFDE 137
++I+HFHLDH +LPYF E + G ++MT TKAI +LL D K V + E F
Sbjct: 68 VIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFFTS 127
Query: 138 QDINRSMDRI 147
DI M ++
Sbjct: 128 VDIKNCMQKV 137
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++M+H TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I+PLGAG +VGRSC+ +S GK ++ DCG+H YS P F I +D
Sbjct: 58 EIKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLD 117
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++ITHFHLDH SLP+ E + G ++MT+ TKAI +LL DY K+ ++ + F
Sbjct: 118 CVIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDYRKIQTEFKGDKNFFT 177
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 178 SQMIKNCMKKV 188
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ ++PLGAG +VGRSC+ +S G+ ++ DCG+H YS P F I+ +D
Sbjct: 3 EIKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++ITHFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV ++ + F
Sbjct: 63 CVIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKNCMKKV 133
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 6/135 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I+PLGAG +VGRSC+ ++ GK ++ DCG+H Y P F I +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH SLP+ E + G ++MT+ TKAI ++LL DY KV + E F
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTS 127
Query: 138 QDINRSMDRIEVCFL 152
DI M + C L
Sbjct: 128 DDIKNCMKKCIGCAL 142
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH+T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--- 75
R ++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I +
Sbjct: 8 RSMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRNGRLT 67
Query: 76 --IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVED 132
+D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E
Sbjct: 68 DFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEA 127
Query: 133 MLFDEQDINRSMDRI 147
F Q I M ++
Sbjct: 128 NFFTSQMIKDCMKKV 142
>gi|89266447|gb|ABD65515.1| cleavage and polyadenylation specificity factor 3 [Ictalurus
punctatus]
Length = 67
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
D IDP+ ID+LLI+HFHLDH +LP+FL+KT++ GR FMTHATKAIY+ LL+DYVKVS +
Sbjct: 2 DLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKVSNI 61
Query: 129 SVEDML 134
S +DML
Sbjct: 62 SADDML 67
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 11/152 (7%)
Query: 7 PPSL-KRRDVPVSREGD----QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG 61
PPSL + R P + + ++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++
Sbjct: 55 PPSLPEERGGPGNTQCRPAMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 114
Query: 62 MAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYK 116
P F I + +D ++I+HFHLDH +LPYF E + G ++MTH T+AI
Sbjct: 115 DRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICP 174
Query: 117 LLLTDYVKVS-KVSVEDMLFDEQDINRSMDRI 147
+LL DY K++ E F Q I M ++
Sbjct: 175 ILLEDYRKIAVDKKGEANFFTSQMIKDCMKKV 206
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++PLGAG +VGRSCV ++ K I+FDCG+H Y P F I + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKIIDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++ITHFHLDH +LPYF E + G ++MT TKAI +LL DY K++
Sbjct: 63 VIITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKIT 110
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-------AI 76
+ I+PLGAG +VGRSC+ +S K ++FDCG+H Y P F+ I I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDM 133
D ++I+HFHLDH +LPY E+ + G ++MT TK I +LL D+ KV E
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 134 LFDEQDINRSMDRIEVCFL 152
F + I M ++E+ L
Sbjct: 124 FFTSEMIKNCMRKVEIVGL 142
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I+PLGAG EVGRSC+ ++ GK ++ DCG+H ++ P F I ID
Sbjct: 3 EIKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E ++G ++MT TKAI +LL D+ KV K + +F
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFIFT 122
Query: 137 EQDINRSMDRIEVCFL 152
I M++++ L
Sbjct: 123 SNMIKDCMNKVKTISL 138
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|10435258|dbj|BAB14541.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|313224131|emb|CBY43589.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-------AI 76
+ I+PLGAG +VGRSC+ +S K ++FDCG+H Y P F+ I I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDM 133
D ++I+HFHLDH +LPY E+ + G ++MT TK I +LL D+ KV E
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 134 LFDEQDINRSMDRIEVCFL 152
F + I M ++E+ L
Sbjct: 124 FFTSEMIKNCMRKVEIVGL 142
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|14165488|gb|AAH08041.1| CPSF3L protein [Homo sapiens]
gi|18044933|gb|AAH20199.1| CPSF3L protein [Homo sapiens]
Length = 389
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 111
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----AIDVL 79
+ + LGAG ++GRSCV +S + KTI+FDCG+H +S P F + ID +
Sbjct: 1 MKVTILGAGQDIGRSCVVVSIQNKTIMFDCGMHMGHSDHRRFPDFKLLGAGPYTGVIDCV 60
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF---- 135
+ITHFH+DH LPYF E+ ++G ++MT TKA+ ++L DY KV + F
Sbjct: 61 IITHFHMDHCGGLPYFTERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKFQYPT 120
Query: 136 -DEQDINRSMDRI 147
+E++I M ++
Sbjct: 121 YNEENIKACMKKV 133
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
ID+LL++HFH H +LP+FL KTTF GR FMTHATKAIY+ LL DY+KVS + E ML+
Sbjct: 1 IDLLLVSHFHWYHCGALPWFLLKTTFKGRCFMTHATKAIYRWLLADYIKVSNIGTEQMLY 60
Query: 136 DEQDINRSMDRIE 148
E D+ SM++IE
Sbjct: 61 TEADLEASMEKIE 73
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
+ I+PLGAG +VGRSC+ ++ K I+ DCG+H Y P F I +D
Sbjct: 33 NIKIVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 92
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F
Sbjct: 93 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 152
Query: 137 EQDINRSMDRIEVCFL 152
DI M ++ C L
Sbjct: 153 SDDIKNCMKKVIGCAL 168
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S A+ ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHCVIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
FHLDH +LPYF E ++G V+MT+ TKA+ L+L DY KV
Sbjct: 68 FHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKV 109
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ K I+FDCG+H Y P F I PS A+ ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +L YF E ++G V+MT+ TKA+ L+L DY KV E+ LF I
Sbjct: 68 FHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAE 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTA 122
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 123 QMIKDCMKKV 132
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S ++D ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FHLDH +LPYF E ++G ++MT+ TKA+ L+L D+ KV E+ F I++
Sbjct: 68 FHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTSLHISQ 127
Query: 143 SMDRI 147
M+++
Sbjct: 128 CMEKV 132
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G +++TH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LP+ E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV +S GK I+FDCG+H Y P F +I + ID +++THF
Sbjct: 6 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 65
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
HLDH +LPYF E + G V+MT+ TKA+ ++L DY K+
Sbjct: 66 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKI 106
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV +S GK I+FDCG+H Y P F +I + ID +++THF
Sbjct: 1 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 60
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
HLDH +LPYF E + G V+MT+ TKA+ ++L DY K+
Sbjct: 61 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKI 101
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP---------SAIDVL 79
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I SAI +
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTSAISCV 67
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 138
+ITHFHLDH +LPYF E + G ++MT+ TKA+ L+L DY KV E+ + +
Sbjct: 68 IITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSYE 127
Query: 139 DINRSMDRI 147
DI R M ++
Sbjct: 128 DILRCMKKV 136
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+FDCG+H Y+ P F I + ID
Sbjct: 3 IRVRPLGAGQDVGRSCLLVSIGGKNIMFDCGMHMGYNDARRFPDFASIKRTGPYTDVIDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++++HFHLDH ++ +F E + G ++MTH TKAI +LL DY K++ + E F
Sbjct: 63 VIVSHFHLDHCGAIVHFSEVCGYDGPIYMTHPTKAICPILLEDYRKLTVERKGETNFFTS 122
Query: 138 QDINRSMDRI 147
+I M ++
Sbjct: 123 ANIKACMKKV 132
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID----PSAIDVL 79
+ + PLGAG +VGRSC+ + GK I+ DCG+H Y+ P F I ++D +
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCV 63
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+I+HFHLDH +LP+ E ++G ++MTH TKAI +LL D KV+
Sbjct: 64 IISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVA 110
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID----PSAIDVL 79
+ + PLGAG +VGRSC+ + GK I+ DCG+H Y+ P F I ++D +
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCV 63
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+I+HFHLDH +LP+ E ++G ++MTH TKAI +LL D KV+
Sbjct: 64 IISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVA 110
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-- 75
S G + +P GAG +VGRSC + G+T++FDCG H + P F + +
Sbjct: 7 SSYGAERQTVPTGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRF 66
Query: 76 ---IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVE 131
ID ++ITHFH DH +LPYF E + G + MT+ T AI ++L DYVKV + E
Sbjct: 67 TEIIDAVVITHFHTDHLGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNADRPGE 126
Query: 132 DMLFDEQDINRSMDRI 147
+ ++EQ + + R+
Sbjct: 127 RLPYNEQHVRDCLRRV 142
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 27 IPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLI 81
+P GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I
Sbjct: 41 VPAGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVII 100
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 101 SHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMI 160
Query: 141 NRSMDRI 147
M ++
Sbjct: 161 KDCMKKV 167
>gi|281206063|gb|EFA80252.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 114
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 9 SLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKR+ + D L ++P+GAG EVGRSCV + YKGKTI+FDCG+HPA+SGM++LP+F
Sbjct: 39 SLKRQIRGGTESDDILEVMPIGAGAEVGRSCVLLKYKGKTIMFDCGVHPAFSGMSSLPFF 98
Query: 69 DEI-DPSAIDVLLITH 83
DEI D S ID+LL++
Sbjct: 99 DEISDASKIDLLLVSQ 114
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 8/110 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF----DEIDP----SA 75
+T+ PLGAG +VGRSC+ + K ++ DCG+H Y P F +DP S
Sbjct: 3 ITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVVINSL 62
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+DV++I+H+HLDH +LPYF EK +SG + MT+ TKA+ +LL D KV
Sbjct: 63 VDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKV 112
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITH 83
LGAG +VGRSCV ++ KTI+FDCG+H Y+ P F I + ID ++I+H
Sbjct: 1 LGAGQDVGRSCVIVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML----FDEQD 139
FHLDH +LPYF E + G ++MT+ TKAI +LL D+ +V D L F +D
Sbjct: 61 FHLDHCGALPYFTEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVDRKGDNLNQGFFSSED 120
Query: 140 INRSMDRIE 148
+ + +++
Sbjct: 121 VKNCIKKVQ 129
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D ++I+HF
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F Q I
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDC 129
Query: 144 MDRI 147
M ++
Sbjct: 130 MKKV 133
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
L + PLGAG +VGRSC+ +S GK ++ DCG+H Y P F I +
Sbjct: 4 LKVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDE 137
++I+HFHLDH +LPY E + G ++MT+ TKAI +LL D+ KV ++ E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTEYRGETNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKTCMRKV 133
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
++P GAG +VGRSC + G+T++FDCG H + P F + + ID L+
Sbjct: 2 LLPAGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDALV 61
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQD 139
ITHFH+DH +LPYF E + G V MT+ T A+ ++L DYVKV+ ++L + EQ
Sbjct: 62 ITHFHIDHIGALPYFTEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNADRPGEVLPYTEQH 121
Query: 140 INRSMDRI 147
+ + R+
Sbjct: 122 VRDCLRRV 129
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIA 111
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 23 QLTIIPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----I 76
++ + PL GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +
Sbjct: 3 EIRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFL 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 DCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFF 122
Query: 136 DEQDINRSMDRI 147
Q I M ++
Sbjct: 123 TSQMIKDCMKKV 134
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV ++ GK I+FDCG+H Y P F I S ID +++THF
Sbjct: 3 GAGQDVGKSCVIVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVTHF 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MT+ TKA+ L+L DY KV + E F I +
Sbjct: 63 HLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERKGEQEQFSVLQIQKC 122
Query: 144 MDRI 147
M ++
Sbjct: 123 MKKV 126
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++ LGAG EVG+SCV + GK I+FDCG+ ++ + P F +I S A+D
Sbjct: 3 IEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
++ITHFHLDH +L YF E +SG V+MT+ KA+ L+L DY KV
Sbjct: 63 IIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKV 109
>gi|340501262|gb|EGR28065.1| hypothetical protein IMG5_183890 [Ichthyophthirius multifiliis]
Length = 685
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHA 110
FDCG+H G LP FD++ ID++ ITHFHLDH A+LPY KT F G+V+ T
Sbjct: 296 FDCGLHMGKQGYEQLPLFDKVKTDKIDIIFITHFHLDHCAALPYITSKTNFKGKVYATSP 355
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
T+AIYK +L D + ++ L+ DI RS+ IEV
Sbjct: 356 TRAIYKHVLKDSTRDKSDNI--TLYKVDDIERSLKFIEV 392
>gi|217075847|gb|ACJ86283.1| unknown [Medicago truncatula]
Length = 230
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 68/107 (63%), Gaps = 5/107 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++ LGAG EVG+SCV + GK I+FDCG+ ++ + P F +I S A+D
Sbjct: 3 IEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
++ITHFHLDH +L YF E +SG V+MT+ KA+ L+L DY KV
Sbjct: 63 IIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKV 109
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F + S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FH+DH +LPYF E ++G ++M++ TKA+ L+L DY +V ED LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEDELFTTAHIAN 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FH+DH +LPYF E ++G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FH+DH +LPYF E ++G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FH+DH +LPYF E ++G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDRI 147
M ++
Sbjct: 136 MKKV 139
>gi|429965431|gb|ELA47428.1| hypothetical protein VCUG_01079 [Vavraia culicis 'floridensis']
Length = 642
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 17/126 (13%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--------- 74
+ ++PLGAG EVGRSC+ + K KTI+FDCG H +G + P F I S
Sbjct: 1 MKVLPLGAGQEVGRSCIIVKIKEKTIMFDCGTHLGLTGASKYPAFSLISKSPTIHTSDFS 60
Query: 75 -----AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK--VSK 127
+ID++++THFHLDH +LP L + + G+V M+ T+ + +L DY K V+
Sbjct: 61 SFDLSSIDLVILTHFHLDHCGALP-LLYRNKYHGKVVMSTPTRCVLPFVLEDYCKLNVTN 119
Query: 128 VSVEDM 133
+ED+
Sbjct: 120 YGMEDV 125
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDRI 147
M ++
Sbjct: 136 MKKV 139
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDRI 147
M ++
Sbjct: 136 MKKV 139
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDRI 147
M ++
Sbjct: 136 MKKV 139
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDRI 147
M ++
Sbjct: 136 MKKV 139
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDHRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHLDHIGALPYFTEICGYHGPIYMTYPTKALAPFMLEDYRKVTMDQRGEEEQYSYED 127
Query: 140 INRSMDRI 147
I R M ++
Sbjct: 128 ILRCMKKV 135
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 1 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHF 60
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 61 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 120
Query: 144 MDRI 147
M ++
Sbjct: 121 MKKV 124
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 5/103 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITH 83
+GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+H
Sbjct: 1 VGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
FHLDH +LPYF E + G ++MTH T+AI +LL DY K++
Sbjct: 61 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 103
>gi|390367057|ref|XP_784887.2| PREDICTED: integrator complex subunit 11-like, partial
[Strongylocentrotus purpuratus]
Length = 355
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ I+PLGAG +VGRSC+ ++ K I+ DCG+H ++ P F I+ + +D
Sbjct: 4 IRIVPLGAGQDVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDA 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++I+HFHLDH +LP+ E + G ++MT TKAI +LL DY K++
Sbjct: 64 VIISHFHLDHCGALPHMSEIVGYDGPIYMTQPTKAICPILLEDYRKIT 111
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI----DP----SA 75
++IIPLGAG +VGRSC+ KT++FDCG+H + P F I DP
Sbjct: 3 ISIIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIINEY 62
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
ID+++I+H+HLDH +LP+F EK + G + MT+ TK++ +LL+D K+
Sbjct: 63 IDLVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKI 112
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI----DP----SA 75
++IIPLGAG +VGRSC+ KT++FDCG+H + P F I DP
Sbjct: 5 ISIIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIINEY 64
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
ID+++I+H+HLDH +LP+F EK + G + MT+ TK++ +LL+D K+
Sbjct: 65 IDLVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKI 114
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 29 LGAGNEVGRSCVYMSYKG-KTILFDCGIHPAYSGMAALPYFDEI-------DPSAIDVLL 80
LGAG EVG+SCV +++ G K ++FDCG+H + P FD + +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G V+MT+ TKA+ L+L DY KV E+ + +D
Sbjct: 68 ITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSYED 127
Query: 140 INRSMDRI 147
I R M ++
Sbjct: 128 ILRCMRKV 135
>gi|449532563|ref|XP_004173250.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like, partial [Cucumis sativus]
Length = 200
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 50/51 (98%)
Query: 99 TTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
TTF GRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDINRSMD+IEV
Sbjct: 11 TTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEV 61
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S + ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
FHLDH +LPYF E ++G ++MT+ T A+ + L DY KV
Sbjct: 68 FHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKV 109
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-------MAALPYFDEID-PSAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y AL + D +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDRI 147
I R M ++
Sbjct: 128 ILRCMKKV 135
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDRI 147
I R M ++
Sbjct: 128 ILRCMKKV 135
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDRI 147
I R M ++
Sbjct: 128 ILRCMKKV 135
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-------- 75
+ +IPLGAG +VGRSCV + G+ ++FDCGIH P F + S
Sbjct: 3 IKVIPLGAGQDVGRSCVIVELGGRRLMFDCGIH--MVNQQQFPDFHFLQGSQQQPLDFTN 60
Query: 76 -IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
ID +LITHFHLDH +L YF E + G + T TKAI L+L D+ KVS +
Sbjct: 61 HIDCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLEDFRKVSSM 114
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 11/115 (9%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-------- 73
D + + PLGAG +VGRSC+ + K I+ DCG+H + + P F++I
Sbjct: 8 DCIEVYPLGAGQDVGRSCILIKIYDKIIMLDCGLHMGVNDLTRYPDFEKIKQIWNIPEKR 67
Query: 74 ---SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
ID++LI+HFHLDH +LPYF E + G ++MT TKA+ + D+ KV
Sbjct: 68 KWDQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKV 122
>gi|307595786|ref|YP_003902103.1| KH-domain/beta-lactamase-domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550987|gb|ADN51052.1| KH-domain/beta-lactamase-domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 643
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV ++ ++T+ LGA EVGRS + + K +IL DCG+ P+ SG A P DE+D
Sbjct: 178 PVYKDA-RITVTGLGAQMEVGRSAILVRTKESSILLDCGVKPSSSGDEA-PLLDEVDLDT 235
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH H+DH +PY K + G V+MT TK + ++LLTDY++ ++ +
Sbjct: 236 LDAVVITHAHMDHIGYVPYLF-KYGYKGPVYMTEPTKYLMEVLLTDYIEQAESEGRVPPY 294
Query: 136 DEQDINRSM 144
QD+ +++
Sbjct: 295 SRQDLAQAL 303
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 20/119 (16%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGAG EVGRSC + Y+GKT++ D G+HPA+SG+A+LP+ DE+D S +D +L+T +
Sbjct: 2 LGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWSTVDAILVTQY---- 57
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRI 147
SL G+V+MTH TKA+YK ++T + + L+ D++ S+ I
Sbjct: 58 -VSL-------QGKGKVYMTHPTKAVYKYIIT--------AGNESLYTPLDVSLSLSHI 100
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--------- 74
L + PLGAG EVGRSC+ + K I+ DCG+H + + P F++I
Sbjct: 7 LQVYPLGAGQEVGRSCIIIKIFDKLIMLDCGLHMSMTDQTRYPDFEKIKQKFNFPANTQY 66
Query: 75 --AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
ID++LI+HFHLDH +LPYF E + G ++MT TKA++ + DY KV
Sbjct: 67 TDIIDLVLISHFHLDHIGALPYFSEIYQYDGPIYMTAPTKALFPYMCEDYRKV 119
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----I 76
+++ + PLGAG +VGRSC+ ++ + I+ DCG+H Y P F I I
Sbjct: 5 NRIIVTPLGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITDII 64
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK 124
D ++I+HFHLDH +L Y E + G ++MTH TKAI +LL D K
Sbjct: 65 DCVIISHFHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDMRK 112
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 129 GAGQDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 188
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MT T+AI +LL DY K++ E F Q I
Sbjct: 189 HLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 248
Query: 144 MDRI 147
M ++
Sbjct: 249 MKKV 252
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 24/141 (17%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + + PLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 24 KPNDHVKLTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 83
Query: 69 DEID-PSAIDVLLITHFHLDHAASLPYFL----EKTTFSGR--------VFMTHATKAIY 115
D D S + ++LITHFH DH A+LPY L ++ G+ V+MT T I+
Sbjct: 84 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 116 KLLLTDYVKVSKV-SVEDMLF 135
K +TD + +K+ + ED+ F
Sbjct: 144 KESVTDVISQTKLYTHEDVEF 164
>gi|385811246|ref|YP_005847642.1| RNA-processing exonuclease [Ignavibacterium album JCM 16511]
gi|383803294|gb|AFH50374.1| Putative RNA-processing exonuclease [Ignavibacterium album JCM
16511]
Length = 461
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
++ + +G GNE+G +C Y++ G I+ DCGIHP G+ +LP F+ ++ +D LI+H
Sbjct: 2 ISFLSVGGGNEIGANCFYLNINGNGIILDCGIHPQKVGIESLPKFELLENKTLDHALISH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
H DH A+LP+ ++K + ++F T T+A+ +L L + V + K ++D F+
Sbjct: 62 AHQDHIAALPFLIKKFPYI-KIFTTPQTRALAELTLHNAVSILKKEIKDEQFE 113
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 33 NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLD 87
++VGRSC+ +S GK I+ DCG+H Y+ P F I S +D ++I+HFHLD
Sbjct: 4 SDVGRSCILVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLD 63
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS---KVSVEDMLFDEQDINRSM 144
H LPY E + G ++MTH TKAI +LL DY K++ K + F Q I M
Sbjct: 64 HCGCLPYMTEMVGYDGPIYMTHPTKAICPILLEDYRKITVDRKGESQANFFTSQMIKDCM 123
Query: 145 DRI 147
++
Sbjct: 124 KKV 126
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 24/141 (17%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + + PLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 2 KANDHVKLTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 61
Query: 69 DEID-PSAIDVLLITHFHLDHAASLPYFL----EKTTFSGR--------VFMTHATKAIY 115
D D S + ++LITHFH DH A+LPY L ++ G+ ++MT T I+
Sbjct: 62 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPIYMTAPTLKIF 121
Query: 116 KLLLTDYVKVSKV-SVEDMLF 135
K +TD + +K+ + ED+ F
Sbjct: 122 KESVTDVISQTKLYTHEDVDF 142
>gi|300176709|emb|CBK24374.2| unnamed protein product [Blastocystis hominis]
Length = 711
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Query: 42 MSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT-T 100
MSYKGK ILFDCG+ P G LPY D I+ +D++LI+HFHLDH +LP +T
Sbjct: 1 MSYKGKVILFDCGVLPDGVGKGTLPYLDAINDDYVDLVLISHFHLDHCGALPVLPRETGQ 60
Query: 101 FSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCF 151
R+FMT TK I + +L DY+ ++ DE+D S+ ++E C
Sbjct: 61 RRTRIFMTPPTKEIMESILRDYLAITATE------DEEDSIYSVSQLEKCI 105
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SC ++ GK I+FDCG+H Y P F I S AID ++ITH
Sbjct: 8 LGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMT 108
FHLDH +LPYF E +SG ++MT
Sbjct: 68 FHLDHVGALPYFTEVCGYSGPIYMT 92
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 31 AGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITHFH 85
AG EVG+SCV ++ GK I+FDCG+H Y P F I S + ++ITHFH
Sbjct: 42 AGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFH 101
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
LDH +LPYF E ++G ++MT+ T A+ + L DY KV
Sbjct: 102 LDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKV 141
>gi|390358942|ref|XP_001200107.2| PREDICTED: uncharacterized protein LOC763955 [Strongylocentrotus
purpuratus]
Length = 1471
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ ++ K I+ DCG+H ++ P F I+ + +D ++I+HF
Sbjct: 114 GAGQDVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDAVIISHF 173
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
HLDH +LP+ E + G ++MT TKAI +LL DY K++
Sbjct: 174 HLDHCGALPHMSEIVGYDGPIYMTQPTKAICPILLEDYRKIT 215
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 24/141 (17%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + + PLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 24 KANDHVKVTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 83
Query: 69 DEIDPSA-IDVLLITHFHLDHAASLPYFL----EKTTFSGR--------VFMTHATKAIY 115
D D A + ++LITHFH DH A+LPY L ++ G+ V+MT T I+
Sbjct: 84 DLEDYVANLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 116 KLLLTDYVKVSKV-SVEDMLF 135
K + D + +K+ + ED+ F
Sbjct: 144 KESVADVISQTKLYTHEDVEF 164
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 33 NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLD 87
+VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HFHLD
Sbjct: 1 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 60
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDR 146
H +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I M +
Sbjct: 61 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKK 120
Query: 147 I 147
+
Sbjct: 121 V 121
>gi|119719226|ref|YP_919721.1| beta-lactamase domain-containing protein [Thermofilum pendens Hrk
5]
gi|119524346|gb|ABL77718.1| beta-lactamase domain protein [Thermofilum pendens Hrk 5]
Length = 639
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDV 78
D++ I+ LGA +EVGRS V + IL D G+ P +G LP FD E D ++D
Sbjct: 177 ADRVRIVSLGAFHEVGRSAVLVQTPEANILLDAGLKPTGNG-DELPLFDLPEFDLESLDA 235
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++ITH HLDH +LP L K + G V+MT T + KLL DY+KV++ ++ L+ +
Sbjct: 236 VVITHAHLDHVGALP-VLFKYGYKGPVYMTEPTLHLSKLLFEDYIKVAQREGKNELYSMR 294
Query: 139 DIN 141
D+N
Sbjct: 295 DVN 297
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
+ ++PLGAG +VGRSCV +S K I+FDCG+H Y P F I + +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVLDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
++ITHFHLDH +LPYF E + G ++MT K + + + Y
Sbjct: 63 VIITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKY 106
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 8/126 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SC ++ GK I+FDCG+H Y P F I S AID ++ITH
Sbjct: 8 LGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATK---AIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDH +LPYF E +SG ++MT K A+Y + + K ++ E++ I
Sbjct: 68 FHLDHVGALPYFTEVCGYSGPIYMTVIPKQGGAVYSVRGYRFGKQKDINGENLRGSSGAI 127
Query: 141 NRSMDR 146
+R
Sbjct: 128 KGERER 133
>gi|299116291|emb|CBN76099.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 108
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ + I+P+GAGNEVGRSCV + Y GKTI+ DCGIHP Y+G+AALP+FD IDPS +
Sbjct: 19 ETMRIMPIGAGNEVGRSCVILKYMGKTIMLDCGIHPGYNGIAALPFFDAIDPSEV 73
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 18/118 (15%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF------------------DE 70
LGAG +VGRSCV ++ G+ ++FDCG H Y+ P F ++
Sbjct: 10 LGAGQDVGRSCVIVTIGGRKVMFDCGAHSGYNDNRRYPLFSLLESKESPITVNSSNKTEK 69
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
I ID +++THFH+DH +LPYF E + G + M++ TKA+ +LL D +V +
Sbjct: 70 ISNFDIDCIILTHFHIDHCGALPYFTENLGYDGPILMSYPTKALTPILLKDSCRVQSL 127
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
L I LGAG +VGRS VY+ + +LFDCG H P FD++ P A+D
Sbjct: 75 LHITVLGAGQDVGRSAVYVRLGRRCVLFDCGCHLGMKDARRFPLFDKLAPRGILTHAVDA 134
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+++HFHLDH +LP E + G V MT TKA+ LLL D +V +
Sbjct: 135 CVVSHFHLDHCGALPTLTEFLQYRGPVLMTFPTKALSPLLLLDCARVGR 183
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 63/141 (44%), Gaps = 56/141 (39%)
Query: 55 IHPAYSGMAALPYFDEIDPSAIDVLLITH------------------------------- 83
+HPA G AALP+FD+ D S +D+LLI+
Sbjct: 1 MHPAKDGFAALPFFDDFDLSTVDILLISQYVHPPLHVRVISATTPLVSHAQMDIQTDIQT 60
Query: 84 ---------------------FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDY 122
FHLDH+ SLPY L KT F GRVFMTHATKAIYK L+ D
Sbjct: 61 FFSLPFLHVQTCEIRQLTDGSFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDN 120
Query: 123 VKVSKVSVED----MLFDEQD 139
V+VS S L++E D
Sbjct: 121 VRVSNTSSSSDQRTSLYNEHD 141
>gi|302412665|ref|XP_003004165.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356741|gb|EEY19169.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 84
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 TH 83
+
Sbjct: 83 SQ 84
>gi|238585297|ref|XP_002390824.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
gi|215454706|gb|EEB91754.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
Length = 220
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLL 118
MA+LP+ D++D S +D +LITHFHLDHAA+L Y EKT F G+V+MTH TKA++K +
Sbjct: 1 MASLPFIDDLDWSTVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFM 60
Query: 119 LTDYVKVSKVSVEDMLFDEQDINRSMDRI 147
+ D++++S S D LF D+ S+ I
Sbjct: 61 MQDFLRMSSSSS-DALFSPLDMTMSLSSI 88
>gi|20094663|ref|NP_614510.1| metal-dependent RNase [Methanopyrus kandleri AV19]
gi|19887824|gb|AAM02440.1| Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [Methanopyrus kandleri AV19]
Length = 652
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRS +++ + +L DCG++ A +G A P+F+ E +D ++ITH HL
Sbjct: 199 LGGFQEVGRSSLFLHTEESRVLLDCGVNVAANGTDAYPHFNVPEFRMDDLDAIVITHAHL 258
Query: 87 DHAASLPYFLEKTTFSGR--VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
DH LPYF R V+ T T+ + LLLTDY+KV + ++ + E+D+ + +
Sbjct: 259 DHCGFLPYFYRHKVIESRVPVYCTPPTRDLMYLLLTDYIKVLEKRGQEPPYTEKDVKKVI 318
Query: 145 DR 146
R
Sbjct: 319 KR 320
>gi|440783043|ref|ZP_20960854.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
gi|440219618|gb|ELP58829.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
Length = 828
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLD 87
LG NEVG SC+ +S K IL DCGI + S LP F I D +D ++I+H H+D
Sbjct: 6 LGGANEVGGSCILISVSNKNILLDCGIRQS-SSKDPLPDFKTIQDKGGLDAIIISHAHMD 64
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDR 146
H SLP ++ F+ +++ T TK + K+LL D +K+ + +E L+ E D+ M+R
Sbjct: 65 HIGSLPIISKEYPFA-KIYTTIMTKDLMKVLLYDSLKIMNNRELEIPLYAEADVENMMNR 123
Query: 147 I 147
I
Sbjct: 124 I 124
>gi|389843051|ref|YP_006345131.1| exonuclease [Mesotoga prima MesG1.Ag.4.2]
gi|387857797|gb|AFK05888.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Mesotoga prima MesG1.Ag.4.2]
Length = 443
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+T+ PLG G E+G + +S GK IL D G HP G +LP D+I+ +DV++I+H
Sbjct: 1 MTLTPLGGGREIGANSYLLSLDGKNILIDAGRHPVKEGYESLPEIDKIN--DLDVIMISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-----SKVSVEDMLFDEQ 138
H DH +SLPY ++ + + M K + +L + V+V +K VE +L++
Sbjct: 59 SHYDHLSSLPYISQRWP-NAPILMAQENKGLALRILQNSVEVMKKKNAKDGVEPILYNHG 117
Query: 139 DINRSMDRI 147
++N RI
Sbjct: 118 EVNELKRRI 126
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella
vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 9 SLKRR--DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ V E D L I PLG+G EVGRSC + +KGK ++ DCGIHP +G+ +LP
Sbjct: 4 SVKRKADSVIPPEESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLP 63
Query: 67 YFDEIDPSAIDVLL 80
+ DEID + ID+LL
Sbjct: 64 FLDEIDTAEIDLLL 77
>gi|409039929|gb|EKM49418.1| hypothetical protein PHACADRAFT_167242 [Phanerochaete carnosa
HHB-10118-sp]
Length = 702
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 34/136 (25%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI--HPAYSGMAALPYFDEI 71
DVP L+I LGAG EVGRSC + Y+G+ I+ D G+ HP
Sbjct: 4 DVPT------LSITLLGAGQEVGRSCCVLQYRGRAIVCDTGVPVHPV------------- 44
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
FHL+HAA+L Y +EK G+++MTH TKA++K ++ D+V++ S
Sbjct: 45 ------------FHLNHAAALTYIMEKVDGKGKIYMTHPTKALHKFMMQDFVRMDS-SSS 91
Query: 132 DMLFDEQDINRSMDRI 147
D LF +++ S+ I
Sbjct: 92 DALFSPMELSVSLASI 107
>gi|159041038|ref|YP_001540290.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919873|gb|ABW01300.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 636
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGA EVGRS + + +L D G+ P+ GM P+FD ID +D ++I+H HLDH
Sbjct: 185 LGACFEVGRSALLIETSESRVLLDAGVKPS-GGMDEAPFFDVIDVDNLDAVVISHAHLDH 243
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
LPY L K + G V+MT TK + ++LLTDY+ +S
Sbjct: 244 IGMLPY-LYKYGYKGPVYMTEPTKYLMEILLTDYIDLS 280
>gi|297545551|ref|YP_003677853.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843326|gb|ADH61842.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 829
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAIIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHATK + ++LL D +K+ + E ++ E + +DR+
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDRV- 123
Query: 149 VCF 151
+C+
Sbjct: 124 LCY 126
>gi|361127418|gb|EHK99386.1| putative endoribonuclease ysh-1 [Glarea lozoyensis 74030]
Length = 83
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G+H Y G+AALP++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHILQYKGKTVMLDAGMHAGYEGLAALPFYDDFDLSTVDVLLI 81
Query: 82 TH 83
+
Sbjct: 82 SQ 83
>gi|289579410|ref|YP_003478037.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
gi|289529123|gb|ADD03475.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
Length = 829
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAVIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHATK + ++LL D +K+ + E ++ E + +DR+
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDRV- 123
Query: 149 VCF 151
+C+
Sbjct: 124 LCY 126
>gi|333910182|ref|YP_004483915.1| KH-domain/beta-lactamase-domain-containing protein [Methanotorris
igneus Kol 5]
gi|333750771|gb|AEF95850.1| KH-domain/beta-lactamase-domain protein [Methanotorris igneus Kol
5]
Length = 635
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--E 70
RD+ + RE + + LG EVGR+C+Y+ +L DCGI+ A G A P+FD E
Sbjct: 170 RDIKI-REDYWVRVSFLGGAREVGRTCLYLQTPDSRVLIDCGINIAVEGDRAYPHFDAPE 228
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
ID ++ITH HLDH +P + + G V+ T T+ + LL DY+ +++
Sbjct: 229 FSIEEIDAVVITHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLFKDYLDIAEKEG 287
Query: 131 EDMLFDEQDIN 141
+D+ + +DI
Sbjct: 288 KDVPYTAKDIK 298
>gi|345018855|ref|YP_004821208.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344034198|gb|AEM79924.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 829
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ +GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLEGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAIIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHATK + ++LL D +K+ + E ++ E + +DR
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDR-A 123
Query: 149 VCF 151
+C+
Sbjct: 124 LCY 126
>gi|374636367|ref|ZP_09707940.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
gi|373559249|gb|EHP85554.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
Length = 635
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--E 70
RD+ + R+ + + LG EVGR+C+Y+ IL DCGI+ A G A P+FD E
Sbjct: 170 RDIKI-RDDYWIRVSFLGGAREVGRTCLYLQTPDSRILIDCGINIAVEGDRAYPHFDAPE 228
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
ID ++ITH HLDH +P + + G V+ T T+ + LL DY+ +++
Sbjct: 229 FSIEGIDAVVITHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLFKDYLDIAEKEG 287
Query: 131 EDMLFDEQDIN 141
+D+ + +DI
Sbjct: 288 KDVPYASKDIK 298
>gi|18312205|ref|NP_558872.1| mRNA 3'-end processing factor [Pyrobaculum aerophilum str. IM2]
gi|18159643|gb|AAL63054.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 634
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S +L DCG+ PA + P D ID
Sbjct: 167 PVVKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPAQND-EEFPLLDLIDIDR 224
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+D +++TH H+DH LP FL K + G V+MT TK +LL+DYV++ +
Sbjct: 225 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLSDYVELKE 275
>gi|352683091|ref|YP_004893615.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
gi|350275890|emb|CCC82537.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
Length = 635
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P+ REG +TI LGA EVGRS + + IL DCG+ P+ P +++D
Sbjct: 168 PIVREG-AITISFLGASMEVGRSAILVDTTESKILLDCGLKPSQYE-EEFPLLEQVDLDE 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+D ++++H H+DH LPY L K + G V+MT TK + +LLTDYV++ +
Sbjct: 226 LDAVVLSHAHMDHVGCLPY-LYKYGYKGPVYMTDPTKYLTYILLTDYVELKE 276
>gi|170291024|ref|YP_001737840.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175104|gb|ACB08157.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 624
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGA EVGRS V ++ +L DCGI + S +A P D ID +D ++ITH HLDH
Sbjct: 180 LGAAREVGRSSVLITTDESNVLLDCGI--SLSSRSAFPRLDLIDIDELDAVIITHAHLDH 237
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+ +LP L K + G V++T T+ + LLL DY+ +S+ F +D+ M+
Sbjct: 238 SGALP-LLFKYGYRGPVYLTRPTRDLMMLLLYDYINLSQRVGSIPFFSWRDVVNMMN 293
>gi|159904868|ref|YP_001548530.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886361|gb|ABX01298.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 433
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+P + K ++ T TKAI K LL D +K++ V +D+ +D D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGVEGQDIPYDRADVNKSLN 117
>gi|187736366|ref|YP_001878478.1| beta-lactamase [Akkermansia muciniphila ATCC BAA-835]
gi|187426418|gb|ACD05697.1| beta-lactamase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 456
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
++ + E+G +C + G I+ D G+HP G AA+P FD ++P++++ + ++H
Sbjct: 2 ISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLSH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS------VEDMLFDE 137
HLDH +LP EK + VFMT A A+ +++L + V V VE F
Sbjct: 62 SHLDHLGTLPVLQEKQP-AAEVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTH 120
Query: 138 QDINRSMD 145
D++R D
Sbjct: 121 NDLDRLSD 128
>gi|45357994|ref|NP_987551.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
S2]
gi|44920751|emb|CAF29987.1| Rhodopsin-like GPCR superfamily:Beta-lactamase-like [Methanococcus
maripaludis S2]
Length = 433
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVELKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLN 117
>gi|333897915|ref|YP_004471789.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113180|gb|AEF18117.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 820
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 4/122 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI A SG LP F I + +DV+LI+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMA-SGKDNLPDFQLIQENGGVDVILISHAHMDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP L + +++MTHA K + ++LL D +K+ + E + E + ++RI
Sbjct: 66 IGALP-ILSRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRI- 123
Query: 149 VC 150
+C
Sbjct: 124 IC 125
>gi|325969789|ref|YP_004245981.1| beta-lactamase [Vulcanisaeta moutnovskia 768-28]
gi|323708992|gb|ADY02479.1| beta-lactamase domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 650
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV ++ ++T+ LGA EVGRS + + K +IL DCG+ P+ SG A P DE+D
Sbjct: 185 PVYKDA-RITVTGLGAQMEVGRSAILIRTKESSILLDCGVKPSSSGDEA-PLLDELDLDT 242
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH H+DH +PY K + G V+MT TK + ++LLTDY++ ++ +
Sbjct: 243 LDAIVITHAHMDHIGFVPYLF-KYGYKGPVYMTEPTKYLMEVLLTDYIEQAESEGRVPPY 301
Query: 136 DEQDINRSM 144
QD+ +++
Sbjct: 302 SRQDLAQAL 310
>gi|134046233|ref|YP_001097718.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663858|gb|ABO35504.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 433
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLN 117
>gi|335436298|ref|ZP_08559097.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|335438977|ref|ZP_08561703.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|334889315|gb|EGM27602.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
gi|334897911|gb|EGM36036.1| metal-dependent RNase [Halorhabdus tiamatea SARL4B]
Length = 523
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+ I P G EVGRSC + + L DCG+ +++ A P F ++P ID + IT
Sbjct: 3 EFEITPRGGVEEVGRSCYQVQAGDRDYLVDCGLKQSHT--AEFPTFRGLEPGQIDAVFIT 60
Query: 83 HFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFD 136
H H+DH LP ++ F+ + MT T A+ +LL D +++ K E++ F
Sbjct: 61 HAHIDHIGGLPVAEQRGLFADDASIIMTRPTNALATILLHDSLQIHKQEAEELGRPQEFT 120
Query: 137 EQDINRSMDRI 147
D+ R +DR+
Sbjct: 121 SDDVERVLDRV 131
>gi|448714461|ref|ZP_21702184.1| metal-dependent RNase [Halobiforma nitratireducens JCM 10879]
gi|445788610|gb|EMA39318.1| metal-dependent RNase [Halobiforma nitratireducens JCM 10879]
Length = 613
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 14 DVPVS---REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
DVP++ EG +IP G EVGRSC + K T L D G++ G P F
Sbjct: 23 DVPLAVDPGEGTPFIVIPRGGVQEVGRSCYQLETKFGTYLVDAGLNQGDGGQ--FPDFRG 80
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGR--VFMTHATKAIYKLLLTDYVKVSKV 128
ID ID + +TH H+DH +LP + S R + T T+A+ LL D +K+ K
Sbjct: 81 IDEGQIDAVFLTHAHIDHVGALPVIESRNLLSPRAPIITTRPTEALASTLLKDSLKIHKE 140
Query: 129 SVE----DMLFDEQDINRSMDR 146
E + L+ + D+ + +DR
Sbjct: 141 KAEKPGREQLYTDADVRKVLDR 162
>gi|150403348|ref|YP_001330642.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034378|gb|ABR66491.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 433
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ + S + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLS-SEESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPVLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLN 117
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 43/153 (28%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAY---------------SGMAALPYFDEIDP 73
LGAG VGRSCV + + + I+FDCG H Y S M P DE +
Sbjct: 15 LGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNMEGAPKIDEENN 74
Query: 74 ----------------------------SAIDVLLITHFHLDHAASLPYFLEKTTFSGRV 105
ID ++I+HFH+DH +LP+F E + G +
Sbjct: 75 LNVEVNISIVNSNISDKEKLINNLKKINEIIDCVIISHFHMDHIGALPFFTEILQYKGTI 134
Query: 106 FMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
M++ TKA+ +LL D K+S + E ++Q
Sbjct: 135 IMSYPTKALSPVLLLDGCKISDIKWEKKNLEKQ 167
>gi|150400309|ref|YP_001324076.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150013012|gb|ABR55464.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 635
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCIYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSIDEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
DH +P + + G V+ T T+ + LL DYV++S+ +++ + +DI ++
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVEISEKEGKNVPYSSKDIKNAI 301
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H Y+ P FD I S +D +LI+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRI 147
++MTH TKAI +LL DY K++ + E F Q I M ++
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKV 104
>gi|239617786|ref|YP_002941108.1| beta-lactamase domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506617|gb|ACR80104.1| beta-lactamase domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 441
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ +PLG G E+G + + GK IL DCG HP G +LP DEID +D + I+H
Sbjct: 1 MRFVPLGGGKEIGANSYLLQVDGKNILIDCGRHPIKEGYESLPAIDEID--KLDYVFISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQD 139
H DH +SLP+ + K + RV + K + +L + V+V K E +L++ D
Sbjct: 59 SHYDHLSSLPHLV-KFFPNVRVLTSRENKKLSVRILRNSVEVMKKKNEKDGEPILYNHSD 117
Query: 140 INRSMDRI 147
+ ++ R+
Sbjct: 118 VKKAKKRM 125
>gi|327311459|ref|YP_004338356.1| beta-lactamase domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947938|gb|AEA13044.1| beta-lactamase domain protein [Thermoproteus uzoniensis 768-20]
Length = 635
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + + +L DCG+ P+ P +++D +
Sbjct: 168 PVVKEG-PITVSFLGASMEVGRSAILVDTTESKVLLDCGLKPS-QYEEEFPLLEQVDLDS 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H H+DH LPY L K + G V+MT TK + +LLTDYV++ + + +
Sbjct: 226 LDAVVLSHAHMDHVGCLPY-LYKYGYRGPVYMTDPTKYLTYILLTDYVELKEREGQIPPY 284
Query: 136 DEQDINRSM 144
+ DI M
Sbjct: 285 TKSDIETLM 293
>gi|305662491|ref|YP_003858779.1| KH-domain/beta-lactamase-domain-containing protein [Ignisphaera
aggregans DSM 17230]
gi|304377060|gb|ADM26899.1| KH-domain/beta-lactamase-domain protein [Ignisphaera aggregans DSM
17230]
Length = 641
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
Query: 13 RDVPVSREG-DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD- 69
RDV +++ G + + + LG EVGRS + + +L D G++P S A P D
Sbjct: 168 RDVLLAKNGSNYVRVTFLGGAQEVGRSAILVETAESRVLLDFGLNPGRSLSPNAFPRIDL 227
Query: 70 -EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
I+P ID +++TH HLDH +PY K F G V+ T AT+ + LLL DY+++S+
Sbjct: 228 LNIEPDDIDAVIVTHAHLDHCGLVPYLF-KYGFRGAVYTTDATRDLMVLLLKDYLEISER 286
Query: 129 SVEDMLFDEQDINRSM 144
+ F +D+ + +
Sbjct: 287 EGTEPPFTLRDVEQML 302
>gi|119872614|ref|YP_930621.1| beta-lactamase domain-containing protein [Pyrobaculum islandicum
DSM 4184]
gi|119674022|gb|ABL88278.1| beta-lactamase domain protein [Pyrobaculum islandicum DSM 4184]
Length = 640
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S IL DCG+ P P D +D
Sbjct: 173 PVVKEG-AITVTFLGAAMEVGRSAILVSTTESNILLDCGLKPGQYD-EDFPLLDAVDIDR 230
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K + G V+MT TK +LL DY+++ + + F
Sbjct: 231 LDAVVLTHAHMDHVGCLP-FLYKYGYRGPVYMTDPTKYQTFILLMDYIELKEREGLEPAF 289
Query: 136 DEQDIN 141
D+
Sbjct: 290 SRADVE 295
>gi|300856380|ref|YP_003781364.1| metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
gi|300436495|gb|ADK16262.1| putative metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
Length = 825
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLD 87
LG EVG SC+ ++ K IL DCGI + S LP F I D +DV++++H H+D
Sbjct: 6 LGGAREVGGSCILLNIYNKNILLDCGIRQS-SSKDTLPDFKSIQDQGGVDVIIVSHAHMD 64
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDR 146
H SLP + K R++ T TK + K+LL D +K+ K ++ L+ E D+ ++R
Sbjct: 65 HIGSLP-IISKEYPGARIYTTRMTKDLMKVLLYDSLKIMKNREGEIPLYAEGDVISMLNR 123
Query: 147 I 147
+
Sbjct: 124 V 124
>gi|171184545|ref|YP_001793464.1| beta-lactamase domain-containing protein [Pyrobaculum neutrophilum
V24Sta]
gi|170933757|gb|ACB39018.1| beta-lactamase domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 634
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S +L DCG+ P P D +D
Sbjct: 167 PVVKEG-AITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYD-EDFPMLDAVDIDR 224
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K + G V+MT TK +LL DY+++ + + F
Sbjct: 225 LDAVVLTHAHMDHVGCLP-FLYKYGYRGPVYMTDPTKYQAFILLMDYIELKEREGLEPAF 283
Query: 136 DEQDIN 141
+ D+
Sbjct: 284 SKADVE 289
>gi|255513745|gb|EET90010.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 655
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-----------YSGMAALPYFD- 69
+ L LG EVGRSC+ + I+ DCGI P G A PY D
Sbjct: 188 EWLKATALGGFREVGRSCLLLETPNSKIIIDCGISPEPGIKGLDANANQEGNKAFPYIDS 247
Query: 70 -EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
I + ID +++TH H+DH +PY K + G V+ T T+ + LLLTDY ++ +
Sbjct: 248 ANISINEIDAVILTHGHMDHMGFVPYLF-KYGYEGPVYCTPPTRDLAALLLTDYTRLVQK 306
Query: 129 SVEDMLFDEQDINR 142
S L+ E+DI +
Sbjct: 307 SGGTPLYGEKDIKK 320
>gi|145590331|ref|YP_001152333.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145282099|gb|ABP49681.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 635
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S +L DCG+ P+ P D +D
Sbjct: 168 PVLKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYD-EDFPMLDLVDIDR 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+D +++TH H+DH LP FL K + G V+MT TK +LLTDYV++ +
Sbjct: 226 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLTDYVELKE 276
>gi|340623619|ref|YP_004742072.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
X1]
gi|339903887|gb|AEK19329.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
X1]
Length = 433
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
G +EVGRSCV + + T+LFDCG+ P S P D ++ D + +H HLD
Sbjct: 7 GGASEVGRSCVELKTEKSTVLFDCGVKLSPEES---EYPILDNLNA---DCVFASHAHLD 60
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
H +P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 61 HTGGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLN 117
>gi|379005388|ref|YP_005261060.1| universal KH-domain/beta-lactamase-domain protein [Pyrobaculum
oguniense TE7]
gi|375160841|gb|AFA40453.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Pyrobaculum oguniense TE7]
Length = 635
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S +L DCG+ P+ P D +D
Sbjct: 168 PVLKEG-PITVAFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYD-EDFPMLDLVDIDR 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+D +++TH H+DH LP FL K + G V+MT TK +LLTDYV++ +
Sbjct: 226 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLTDYVELKE 276
>gi|448732507|ref|ZP_21714783.1| beta-lactamase [Halococcus salifodinae DSM 8989]
gi|445804621|gb|EMA54862.1| beta-lactamase [Halococcus salifodinae DSM 8989]
Length = 541
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ I+P G EVGRSC + +T L DCGI Y P F + P +D + +T
Sbjct: 24 EMQILPRGGVREVGRSCFEIDVGDRTYLVDCGIKQGYK--TEYPLFRGLGPGEVDAVFLT 81
Query: 83 HFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFD 136
H H+DH +LP ++ + + T T A+ +LL D +K+ K+ E++ F
Sbjct: 82 HAHVDHIGALPVAEQRGLLADDAPIIATRPTNALAHILLHDSLKIHKLQAEELGEPQQFT 141
Query: 137 EQDINRSMDRIE 148
+D+ + ++R E
Sbjct: 142 AEDVEKVLNRFE 153
>gi|336121952|ref|YP_004576727.1| KH-domain/beta-lactamase-domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856473|gb|AEH06949.1| KH-domain/beta-lactamase-domain protein [Methanothermococcus
okinawensis IH1]
Length = 635
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--E 70
RDV + RE + + LG EVGR+C Y+ IL DCGI+ A G A P+FD E
Sbjct: 170 RDVKL-REDCWIRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAIDGDKAFPHFDAPE 228
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
ID ++ITH HLDH +P + + G V+ + T+ + LL DY+ +++
Sbjct: 229 FSIEEIDAVVITHAHLDHCGFVPGLF-RYGYDGPVYCSKPTRDLMTLLQKDYLDIAEKEG 287
Query: 131 EDMLFDEQDINR 142
+ M + +DI +
Sbjct: 288 KVMPYSSKDIKK 299
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 43/153 (28%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD------------------- 69
LGAG VGRSCV + + + I+FDCG H Y P F+
Sbjct: 15 LGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNLEGAPKIDEENN 74
Query: 70 ---EIDPS---------------------AIDVLLITHFHLDHAASLPYFLEKTTFSGRV 105
E++ S ID ++I+HFH+DH +LP+F E + G +
Sbjct: 75 LNVEVNISIVNSNIADKEKLINNLKKINEMIDCVIISHFHMDHIGALPFFTEILQYKGTI 134
Query: 106 FMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
M++ TKA+ +LL D K+S + E ++Q
Sbjct: 135 IMSYPTKALSPVLLLDGCKISDMKWEKKNLEKQ 167
>gi|150400487|ref|YP_001324253.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013190|gb|ABR55641.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 635
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--E 70
RDV + RE + + LG EVGR+C Y+ IL DCGI+ A G A P+FD E
Sbjct: 170 RDVKL-REDSWIRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAMDGDRAFPHFDAPE 228
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
ID +++TH HLDH +P + + G ++ + T+ + LL DY+ +++
Sbjct: 229 FAVEEIDAVVVTHAHLDHCGFVPGLF-RYGYDGPIYCSKPTRDLMTLLQKDYIDIAEKEG 287
Query: 131 EDMLFDEQDINRSMDRI 147
+ + + +DI + + I
Sbjct: 288 KVVPYSSKDIKKCVKHI 304
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 49/165 (29%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA---- 75
++ I LGAG VGRSCV + + + ++FDCG H Y P F+ + DP A
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDPYAVERE 67
Query: 76 ------------------------------------------IDVLLITHFHLDHAASLP 93
ID ++I+HFH+DH +LP
Sbjct: 68 KGMGEANIYEHNLNTEVNITIVNSSISEKEKLIKNLSRINEIIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+F E + G + M++ TKA+ LL D +V+ + E F+ Q
Sbjct: 128 FFTEILKYRGTIIMSYPTKALSPTLLLDGCRVADIKWEKQNFERQ 172
>gi|70952759|ref|XP_745526.1| cleavage and polyadenylation specificity factor protein [Plasmodium
chabaudi chabaudi]
gi|56525876|emb|CAH78255.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 327
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 43/153 (28%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD------------------- 69
LGAG VGRSCV + + + I+FDCG H Y P F+
Sbjct: 15 LGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNNNMEGGPKIDEENN 74
Query: 70 ---EIDPSA---------------------IDVLLITHFHLDHAASLPYFLEKTTFSGRV 105
E++ S ID ++I+HFH+DH +LP+F E + G +
Sbjct: 75 LNVEVNISIVNSNIADKEKLINNLKRINEIIDCVIISHFHMDHIGALPFFTETLQYKGTI 134
Query: 106 FMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
M++ TKA+ +LL D K+S E ++Q
Sbjct: 135 IMSYPTKALSPVLLLDGCKISDQKWEKKNLEKQ 167
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI + S LP F I + +DV++I+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQLIQENGGVDVIVISHAHMDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHA K + ++LL D +K+ + E ++ E + ++RI
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEKEAEIPVYAEIHVREMLNRI- 123
Query: 149 VCF 151
+C+
Sbjct: 124 ICY 126
>gi|392409495|ref|YP_006446102.1| putative metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain protein [Desulfomonile tiedjei DSM 6799]
gi|390622631|gb|AFM23838.1| putative metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain protein [Desulfomonile tiedjei DSM 6799]
Length = 474
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
++I LG G E+G + + +KG IL DCG+ G +LP FD + +D +++TH
Sbjct: 7 ISITVLGGGREIGANSYLLDWKGSRILLDCGLDVTKKGYESLPRFDALGKRGVDAVIVTH 66
Query: 84 FHLDHAASLPYFLEKTTFSG-RVFMTHATKAIYKLLLTDYVKV 125
H+DH SLP ++ G RV +T +K + L+L D K+
Sbjct: 67 AHIDHVGSLPIIMDAYLGRGRRVHVTVPSKKLIPLMLMDSAKM 109
>gi|45358257|ref|NP_987814.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|44921014|emb|CAF30250.1| Beta-lactamase-like:KH domain [Methanococcus maripaludis S2]
Length = 635
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDI 297
>gi|159904583|ref|YP_001548245.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886076|gb|ABX01013.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 635
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDI 297
>gi|150403634|ref|YP_001330928.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034664|gb|ABR66777.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 635
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDI 297
>gi|340623726|ref|YP_004742179.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|339903994|gb|AEK19436.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 635
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDI 297
>gi|150400157|ref|YP_001323924.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150012860|gb|ABR55312.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 433
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G EVGRSCV + T+LFDCG+ + G+ P D+++ D + +H HLDH
Sbjct: 7 GGAFEVGRSCVEVKSDKSTVLFDCGVKLSPKGIE-YPILDDLNA---DCVFPSHSHLDHV 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
S+P + K ++ T TKAI K LL D +K+S+V ++ +D++D N S+
Sbjct: 63 GSIPVLIRKGMVPA-IYATPITKAITKELLRDSLKISQVEGHELPYDKEDFNTSL 116
>gi|134045919|ref|YP_001097405.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663544|gb|ABO35190.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 635
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDI 297
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDPSAIDVLLITHF 84
+I GAG EVGRS + + K +L DCG++ A LP + + P +D++LI+H
Sbjct: 15 LICFGAGGEVGRSSILVEIGSKKVLLDCGVNFTATDEKDRLPAYQDPFPK-VDLVLISHI 73
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
H DH A++PY E V+MT A++ + ++L D++KV+ E+ + +D+
Sbjct: 74 HTDHLAAVPYLTEVLKCQAPVYMTRASQMMMPIMLDDFLKVT----ENPPYKAEDLTNCK 129
Query: 145 DRIEV 149
+I+V
Sbjct: 130 PKIKV 134
>gi|320449268|ref|YP_004201364.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
gi|320149437|gb|ADW20815.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
Length = 431
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 6/127 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV SC + +G+ IL DCG+ F DP A+D +++TH
Sbjct: 1 MRIVPFGAAREVTGSCHLLLAEGRKILLDCGMFQGREEEKNHTPFG-FDPQAVDAVVLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +E F+E+D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATQATFLLMQIILQDALKV----METPFFEEEDVEEA 114
Query: 144 MDRIEVC 150
+ + +
Sbjct: 115 LRHVRLL 121
>gi|304317834|ref|YP_003852979.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779336|gb|ADL69895.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 820
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI + S LP F I + +DV++I+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQHIQENGGVDVIVISHAHMDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHA K + ++LL D +K+ + E + E + ++RI
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRI- 123
Query: 149 VC 150
+C
Sbjct: 124 IC 125
>gi|374327735|ref|YP_005085935.1| mRNA 3'-end processing factor [Pyrobaculum sp. 1860]
gi|356643004|gb|AET33683.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum sp. 1860]
Length = 644
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LGA EVGRS + +S +L DCG+ P P D +D
Sbjct: 177 PVVKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYD-EDFPLLDLVDIDK 234
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+D +++TH H+DH LP L K + G V+MT TK +LL+DYV++ +
Sbjct: 235 LDAVVLTHAHMDHVGCLP-LLFKYGYRGPVYMTDPTKYQAFILLSDYVELKE 285
>gi|13541495|ref|NP_111183.1| metal-dependent RNase [Thermoplasma volcanium GSS1]
gi|14324879|dbj|BAB59805.1| cleavage and polyadenylation specificity factor [Thermoplasma
volcanium GSS1]
Length = 639
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYF--DEIDP-SAIDVLLIT 82
LG +EVGRS +S K +L DCG + P A PY E+ P S+ID +++T
Sbjct: 185 LGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLSSIDAVILT 244
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV 128
H HLDH+ LP L K + G V+MT T+ + LL DY+KV+++
Sbjct: 245 HAHLDHSGLLP-LLFKYGYDGPVYMTQPTRDLAVLLQDDYIKVARM 289
>gi|390933363|ref|YP_006390868.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568864|gb|AFK85269.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 820
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC + GK IL DCGI + S LP F I + +DV+LI+H H+DH
Sbjct: 7 GGASEVGASCYLANIDGKNILLDCGIRMS-SNKDNLPDFQLIQENGGVDVILISHAHMDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP + + +++MTHA K + ++LL D +K+ + E + E + ++RI
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRI- 123
Query: 149 VC 150
+C
Sbjct: 124 IC 125
>gi|347522769|ref|YP_004780339.1| KH-domain/beta-lactamase-domain containing protein [Pyrolobus
fumarii 1A]
gi|343459651|gb|AEM38087.1| KH-domain/beta-lactamase-domain protein [Pyrolobus fumarii 1A]
Length = 649
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
E + I+ LG EVGRS + + +L D G++P +G P D EI P +D
Sbjct: 178 ENRYVRIVALGGFMEVGRSAILVETSESRVLLDLGVNPGGTGYDMYPRLDIDEIRPEELD 237
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH +P FL K F G V++T T+ + L L D++ V F +
Sbjct: 238 AVIITHAHLDHMGLVP-FLFKYGFKGPVYVTKPTRDLMVLSLFDFLDVVTKEGRKPPFSQ 296
Query: 138 QDINR 142
DI +
Sbjct: 297 HDIRK 301
>gi|256810348|ref|YP_003127717.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus fervens AG86]
gi|256793548|gb|ACV24217.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus fervens
AG86]
Length = 634
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+Y+ +L DCGI+ A+ A P+FD E +D +++TH HL
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVAFED-KAFPHFDAPEFSIEDLDAVIVTHAHL 243
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
DH +P + + G V+ T T+ + LL DY++++K +++ + +DI
Sbjct: 244 DHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIK 297
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 49/165 (29%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD------------- 69
++ I LGAG VGRSCV + + + ++FDCG H Y P F+
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNLLVSSEAHAEERE 67
Query: 70 ---------------EIDPS---------------------AIDVLLITHFHLDHAASLP 93
E++ S ID ++I+HFH+DH +LP
Sbjct: 68 KEKGEANIYEHHLNTEVNISIVNSSISEKEKLINNLKRINEMIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+F E + G + M++ TKA+ +LL D +V+ + E F+ Q
Sbjct: 128 FFTEILKYRGTILMSYPTKALSPILLLDGCRVADLKWEKQNFERQ 172
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 30/133 (22%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----- 75
+ + + PLGAG +VGRSC+ ++ F I P
Sbjct: 2 ANDIKVTPLGAGQDVGRSCILLN------------------------FSFISPEGPITNF 37
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
ID ++I+HFHLDH +LPY E ++G ++MTH TKAI +LL D K+S + E
Sbjct: 38 IDCVIISHFHLDHCGALPYLTEMVGYNGPIYMTHPTKAISPILLEDMRKISVEKKGEVNF 97
Query: 135 FDEQDINRSMDRI 147
F Q I M ++
Sbjct: 98 FTSQMIKDCMKKV 110
>gi|332712233|ref|ZP_08432161.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
gi|332349039|gb|EGJ28651.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
Length = 867
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSAI 76
S+ D+L + PLGA +G SC + ++ DCG P Y + AL Y D +P
Sbjct: 273 SQSYDRLIVTPLGAARSIGASCFKILIGPYEVVLDCGTRPKGYDPLPALDYLD--NP--- 327
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLF 135
++LLI+H H DH ++P F + R+ TH T+ I ++L D +K+ +++ + LF
Sbjct: 328 NLLLISHSHQDHLGAVPVFHSRYP-GARMISTHGTREIAHVMLRDGLKIQQLNEDSPELF 386
Query: 136 DEQDINRSMDRIE 148
DE D+ +++ ++E
Sbjct: 387 DEADLEQTLFQLE 399
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EIDPSAI 76
E D I LG EVGRSC+Y+ IL DCG++ A + A PY + E I
Sbjct: 191 ENDWARITALGGFREVGRSCLYLQTPNSKILLDCGVNVAANDEKNAYPYLNIPEFILDEI 250
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
+ ++I+H HLDH+ +PY L + G V+ + T+ + LL D++ +++ ++ F+
Sbjct: 251 EAVVISHAHLDHSGFVPY-LYHYGYRGPVYCSAPTRDLMALLQLDHIDIAEREGRELPFN 309
Query: 137 EQDINRSM 144
+D+N+ +
Sbjct: 310 AKDVNKCL 317
>gi|10639780|emb|CAC11752.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 497
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYF--DEIDP-SAIDVLLIT 82
LG +EVGRS +S K +L DCG + P A PY E+ P S ID +++T
Sbjct: 185 LGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLSTIDAVILT 244
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
H HLDH+ LP L K + G V+MT T+ + LL DY+KV+++
Sbjct: 245 HAHLDHSGLLP-LLFKYGYDGPVYMTPPTRDLAALLQNDYIKVARME 290
>gi|16082538|ref|NP_394086.1| metal-dependent RNase [Thermoplasma acidophilum DSM 1728]
Length = 639
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 7/107 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYF--DEIDP-SAIDVLLIT 82
LG +EVGRS +S K +L DCG + P A PY E+ P S ID +++T
Sbjct: 185 LGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLSTIDAVILT 244
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
H HLDH+ LP L K + G V+MT T+ + LL DY+KV+++
Sbjct: 245 HAHLDHSGLLP-LLFKYGYDGPVYMTPPTRDLAALLQNDYIKVARME 290
>gi|300867486|ref|ZP_07112137.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
gi|300334480|emb|CBN57305.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
Length = 871
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSAIDV 78
E L + PLGA +G SC + ++ DCG P Y + AL Y + +P D+
Sbjct: 297 ENTHLVVTPLGAARGIGASCFRIEIGPYEVVLDCGSRPKGYDPLPALEYLN--NP---DL 351
Query: 79 LLITHFHLDHAASLPYFLEKTTFSG-RVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFD 136
L+++H HLDH ++P F + + G R+ T T+ I ++L D +KV ++ + LFD
Sbjct: 352 LIVSHAHLDHLGAVPVFHNR--YPGVRIICTQGTREIAHIMLRDCLKVQSLNEDSTPLFD 409
Query: 137 EQDINRSMDRIEV 149
+ D+ R++ R+E
Sbjct: 410 DVDLERTLFRLET 422
>gi|255524630|ref|ZP_05391583.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
gi|255511654|gb|EET87941.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
Length = 827
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLD 87
LG +EVG SC+ + K IL DCGI S LP F I + ID ++I+H H+D
Sbjct: 6 LGGAHEVGGSCILLKIYNKNILLDCGIRQGAS-KDPLPDFRTIQEQGGIDAIIISHAHMD 64
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQDINRSMDR 146
H SLP + K +++ + TK + K+LL D +K+ K E L+ E D+ ++R
Sbjct: 65 HIGSLP-IISKEYPGAKIYANNMTKDLMKVLLYDSLKIMKNREAEIPLYAEVDVENMLNR 123
Query: 147 I 147
I
Sbjct: 124 I 124
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 49/165 (29%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA---- 75
++ I LGAG VGRSCV + + + ++FDCG H Y P F+ + D S+
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDTSSVEKE 67
Query: 76 ------------------------------------------IDVLLITHFHLDHAASLP 93
ID ++I+HFH+DH +LP
Sbjct: 68 KGMGEGNMYEHHLNTEVNITIVNSSISEKEKLIEKLSRINEIIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+F E + G + M++ TKA+ +LL D +V+ + E F+ Q
Sbjct: 128 FFTEILKYRGTIIMSYPTKALSPILLLDGCRVADLKWEKKNFERQ 172
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFD--EIDPSAI 76
E D + +G EVGRSC+Y+ +L DCG++ A + PY + E ++
Sbjct: 176 ENDWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDRNSYPYLNVPEFTLDSL 235
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH+ LPY L + G V+ T T+ + LL D++ ++ E + F+
Sbjct: 236 DAVIITHAHLDHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFN 294
Query: 137 EQDINRSM 144
+ + +S+
Sbjct: 295 VKHVKKSV 302
>gi|261402298|ref|YP_003246522.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus vulcanius M7]
gi|261369291|gb|ACX72040.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
vulcanius M7]
Length = 634
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D ++ITH HL
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIITHAHL 243
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
DH +P + + G V+ T T+ + LL DY++++K +++ + +DI
Sbjct: 244 DHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYSSKDIK 297
>gi|315425373|dbj|BAJ47039.1| mRNA 3'-end processing factor [Candidatus Caldiarchaeum
subterraneum]
Length = 638
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + I LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 178 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 237
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K + G V+ T + L +TDYV V+ +
Sbjct: 238 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 296
Query: 137 EQDINRSM 144
E DI ++
Sbjct: 297 ESDIRLAL 304
>gi|315426553|dbj|BAJ48183.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485301|dbj|BAJ50955.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + I LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 175 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K + G V+ T + L +TDYV V+ +
Sbjct: 235 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 293
Query: 137 EQDINRSM 144
E DI ++
Sbjct: 294 ESDIRLAL 301
>gi|315426611|dbj|BAJ48239.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + I LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 175 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K + G V+ T + L +TDYV V+ +
Sbjct: 235 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 293
Query: 137 EQDINRSM 144
E DI ++
Sbjct: 294 ESDIRLAL 301
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLIT 82
+ +I G EVG SC ++ GK IL DCGI S LP F I + ID ++I+
Sbjct: 1 MKLIFCGGAQEVGASCYLVTIDGKNILLDCGIRLT-SSKDTLPDFRLIQENGGIDAIIIS 59
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H H DH +LP + + + ++MTH +K + ++LL D +K+ + E ++ E +
Sbjct: 60 HAHTDHTGALPA-ISRQFPNALIYMTHMSKDLTRVLLYDSLKIMEREPEIPIYAENHVQE 118
Query: 143 SMDRIEVCF 151
+ R VCF
Sbjct: 119 MLGRT-VCF 126
>gi|156936804|ref|YP_001434600.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565788|gb|ABU81193.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 652
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDPS 74
P+ + + + I LGA EVGRS + + K +L D G + +Y P +E+
Sbjct: 174 PLLFKTNYVRITALGAFKEVGRSAILLETKESKVLLDFGANVGSYDPQKHFPKVEEVPID 233
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
+D +++TH HLDH +P+ L K + G V++T T+ + L+ DY++V++ + +
Sbjct: 234 ELDAVIVTHAHLDHCGLVPW-LYKYGYRGPVYVTQPTRDLMYLVQKDYIEVARKEGKPVP 292
Query: 135 FDEQDINRSMDR 146
+ E DIN + R
Sbjct: 293 YTESDINSMLLR 304
>gi|196229668|ref|ZP_03128532.1| beta-lactamase domain protein [Chthoniobacter flavus Ellin428]
gi|196225994|gb|EDY20500.1| beta-lactamase domain protein [Chthoniobacter flavus Ellin428]
Length = 284
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
LT L E+G +C + GK I+ D G+HP + G AALP F + D ++++H
Sbjct: 4 LTFTNLTRQIEIGANCYCLDLAGKRIVLDSGLHPRFDGTAALPDFSRLPDGTADAIILSH 63
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
H DH S+P + + VFMT AT+ + ++L + V V
Sbjct: 64 AHQDHVGSMPVLMRRQP-QAPVFMTEATRLLSDVMLHNSVNV 104
>gi|15669421|ref|NP_248231.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
gi|2496166|sp|Q58633.1|Y1236_METJA RecName: Full=Uncharacterized protein MJ1236
gi|1591868|gb|AAB99240.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
Length = 634
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D +++TH HL
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIVTHAHL 243
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
DH +P + + G V+ T T+ + LL DY++++K +++ + +DI
Sbjct: 244 DHCGFIPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIK 297
>gi|118392416|ref|XP_001028800.1| putative FEG protein [Tetrahymena thermophila]
gi|89282491|gb|EAR81137.1| putative FEG protein [Tetrahymena thermophila SB210]
Length = 178
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 24/115 (20%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-------- 73
D + + PLGAG +VGRS CG+H + + P F++I
Sbjct: 8 DCIEVYPLGAGQDVGRSY-------------CGLHMGVNDLTRYPDFEKIKQIWNIPEKR 54
Query: 74 ---SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
ID++LI+HFHLDH +LPYF E + G ++MT TKA+ + D+ KV
Sbjct: 55 KWDQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKV 109
>gi|385806123|ref|YP_005842521.1| beta-lactamase [Fervidicoccus fontis Kam940]
gi|383795986|gb|AFH43069.1| beta-lactamase domain protein [Fervidicoccus fontis Kam940]
Length = 619
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL-PYF--DEIDPSAIDV 78
+ + II LG EVGRS + + IL D G++P S ++ P F DE +D
Sbjct: 157 NSIRIIALGGFQEVGRSAILVETNESKILLDAGVNPGSSSFPSIAPRFDVDEFKIEELDA 216
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
++ITH HLDH LP FL K ++G V+MT AT+ I L D++ +
Sbjct: 217 IVITHAHLDHVGMLP-FLFKYGYNGPVYMTKATRDIMVLSQLDFLDI 262
>gi|289192183|ref|YP_003458124.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938633|gb|ADC69388.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
Length = 634
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D +++TH HL
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIVTHAHL 243
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
DH +P + + G V+ T T+ + LL DY++++K +++ + +DI
Sbjct: 244 DHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIK 297
>gi|448739986|ref|ZP_21721976.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
gi|445797770|gb|EMA48216.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
Length = 588
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 2 ASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG 61
A+T P L D P L + P G EVGRSC + T L DCG++ G
Sbjct: 23 AATTPPHELVDGDTP-------LVVHPRGGAREVGRSCYQVETADGTYLVDCGLNQGSGG 75
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLL 119
P F + AID + +TH H+DH +LP + S V T AT AI LLL
Sbjct: 76 Q--FPDFRGLGTEAIDAVFLTHAHIDHIGALPVLEHRNLLSRDATVICTQATAAIAHLLL 133
Query: 120 TDYVKV----SKVSVEDMLFDEQDINRSMDRIE 148
D +K+ +K + F+ D+ + R +
Sbjct: 134 HDSLKIHLEETKKPGRERQFERTDVEEVLARFD 166
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H YS P F I+ ++D ++ITHFHLDH SLP+ E + G
Sbjct: 1 MLDCGMHMGYSDERRFPDFSFINGGGSLTESLDCVIITHFHLDHCGSLPHMSEVVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDRI 147
++MT+ TKAI +LL DY KV ++ + F Q I M ++
Sbjct: 61 IYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFTSQMIKNCMKKV 104
>gi|408404949|ref|YP_006862932.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365545|gb|AFU59275.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 628
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDE--IDPSAI 76
E + +++ LG EVGRSC+ ++ +L DCG++ A +AA+P FD I I
Sbjct: 182 ESAEASLMTLGGFAEVGRSCMLLTTSESKVLLDCGLNIYAKDSLAAMPRFDAAGIGMEEI 241
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H H+DH LP K +SG V+ T T + +L DYV+ S + L+
Sbjct: 242 DAVVLSHAHMDHTGFLPALF-KYGYSGPVYCTEPTLLLMSMLQRDYVRRSGNAA---LYS 297
Query: 137 EQDINRSM 144
E+DI+ ++
Sbjct: 298 EKDIDSAV 305
>gi|254444557|ref|ZP_05058033.1| RNA-metabolising metallo-beta-lactamase family [Verrucomicrobiae
bacterium DG1235]
gi|198258865|gb|EDY83173.1| RNA-metabolising metallo-beta-lactamase family [Verrucomicrobiae
bacterium DG1235]
Length = 453
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I L +G + + + + D G+HP GMAA+P F+ I ID +++TH
Sbjct: 1 MRITDLNREGGIGSNSLLVEAGEFNFVVDAGLHPKMVGMAAVPEFEHIGDRQIDFVIVTH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------LFDE 137
HLDH SLP L+K RVFM+ ++ + + +L + V K E+ LF
Sbjct: 61 CHLDHIGSLPVLLQKHP-KARVFMSLPSQMLVERMLHNSCNVMKRQKEEKRIPEYPLFTH 119
Query: 138 QDINRSMDRIE 148
+DI + DR E
Sbjct: 120 EDIEQIADRFE 130
>gi|153955532|ref|YP_001396297.1| hypothetical protein CKL_2915 [Clostridium kluyveri DSM 555]
gi|219855928|ref|YP_002473050.1| hypothetical protein CKR_2585 [Clostridium kluyveri NBRC 12016]
gi|146348390|gb|EDK34926.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569652|dbj|BAH07636.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 832
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLD 87
LG EVG SC+ + + IL DCGI + S ALP F I + ID ++I+H H+D
Sbjct: 10 LGGAREVGGSCILVKIYNRNILMDCGIRQS-SSKDALPDFKSIQEQGGIDAIIISHSHMD 68
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDR 146
H SLP + K R++ T TK + ++LL D +K+ + E L+ E D+ ++
Sbjct: 69 HIGSLP-IISKEYPLARIYATKMTKDLMRVLLYDSLKIMNNREGEIPLYAESDVKNMLNS 127
Query: 147 I 147
I
Sbjct: 128 I 128
>gi|424814262|ref|ZP_18239440.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
gi|339757878|gb|EGQ43135.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
Length = 544
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGM-AALPYFD--EIDPSAI 76
G+ + I LG+ +VGRSC + + +L DCGI+P A SG PY + E+D +
Sbjct: 170 GEWIRISTLGSCRQVGRSCFLLQTEESNVLLDCGINPSAESGSPENFPYLNAPELDLQQL 229
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H H+DH +PY L K + G ++ T T+ + +L DY+ ++ + +D
Sbjct: 230 DAVILSHAHMDHCGMIPY-LYKMGYDGPLYCTEPTRDLMIMLALDYIGLAHGEGGNAPYD 288
Query: 137 EQDINRSMDR 146
I +++ R
Sbjct: 289 SSHIKKAVKR 298
>gi|340345702|ref|ZP_08668834.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520843|gb|EGP94566.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 645
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS 74
P + ++++I LG ++VGRSC+ +S IL DCGI+P A M + P D +D +
Sbjct: 180 PRLAQKSEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDIT 239
Query: 75 --AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I H HLDH LP L K + G ++ T T + L+ D +KV+
Sbjct: 240 LDELDAIVIGHAHLDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRT 298
Query: 133 MLFDEQDINRSMDR 146
++ E+D+ + M +
Sbjct: 299 PIYSERDVKQIMKQ 312
>gi|297619164|ref|YP_003707269.1| KH-domain/beta-lactamase-domain-containing protein [Methanococcus
voltae A3]
gi|297378141|gb|ADI36296.1| KH-domain/beta-lactamase-domain protein [Methanococcus voltae A3]
Length = 635
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y I+ DCGI+ A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRIMIDCGINVGMDDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
DH +P + + G V+ T T+ + LL DY+ +++ + + + +D+ ++
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYIDIAEKEGKPVPYTSRDVKNAI 301
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-------IDVLLITHFHLDHAASLPYFLEKTTFS 102
+ DCG+H Y+ P F I +D ++I+HFHLDH +LPY E +
Sbjct: 1 MLDCGMHMGYNDERRFPDFTYITDEEGDKLTDHLDCVIISHFHLDHCGALPYMSEMVGYD 60
Query: 103 GRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRIEVCFL 152
G ++MTH TKAI +LL DY K++ + E+ F + I M ++ V L
Sbjct: 61 GPIYMTHPTKAICPILLEDYRKITVERKGEENFFTSEMIKNCMKKVVVVNL 111
>gi|329766104|ref|ZP_08257663.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137375|gb|EGG41652.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 645
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS 74
P + ++++I LG ++VGRSC+ +S IL DCGI+P A M + P D +D +
Sbjct: 180 PRLAQKSEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDIT 239
Query: 75 --AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I H HLDH LP L K + G ++ T T + L+ D +KV+
Sbjct: 240 LDELDAVVIGHAHLDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRT 298
Query: 133 MLFDEQDINRSMDR 146
++ E+D+ + M +
Sbjct: 299 PMYAERDVKQIMKQ 312
>gi|393794892|ref|ZP_10378256.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 658
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS 74
P + ++++I LG ++VGRSC+ +S IL DCGI+P A M + P D +D +
Sbjct: 193 PRLAQKSEVSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDIT 252
Query: 75 --AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I H HLDH LP L K + G ++ T T + L+ D +KV+
Sbjct: 253 LDELDAVVIGHAHLDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRT 311
Query: 133 MLFDEQDINRSMDR 146
++ E+D+ + M +
Sbjct: 312 PMYAERDVKQIMKQ 325
>gi|448726928|ref|ZP_21709309.1| metal-dependent RNase [Halococcus morrhuae DSM 1307]
gi|445792857|gb|EMA43457.1| metal-dependent RNase [Halococcus morrhuae DSM 1307]
Length = 646
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 2 ASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG 61
A+T P L D P L + P G EVGRSC + T L DCG++ G
Sbjct: 23 AATTPPHELVDGDTP-------LVVHPRGGAREVGRSCYQVETADGTYLVDCGLNQGSGG 75
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLL 119
P F + AID + +TH H+DH +LP + S V T AT AI LLL
Sbjct: 76 Q--FPDFRGLGTEAIDAVFLTHAHIDHIGALPVLEHRNLLSRDATVICTQATAAIAHLLL 133
Query: 120 TDYVKV----SKVSVEDMLFDEQDINRSMDRIE 148
D +K+ +K + F+ D+ + R +
Sbjct: 134 HDSLKIHLEETKKPGRERQFERTDVEEVLARCD 166
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H ++ P F I +D ++I+HFHLDH +LPY E +SG
Sbjct: 1 MLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDCVIISHFHLDHCGALPYMTEMVGYSGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS 126
++MTH TKAI +LL DY K++
Sbjct: 61 IYMTHPTKAICPILLEDYRKIT 82
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP- 73
P++ + + I LG EVGRS +S IL DCG++ A S Y E+ P
Sbjct: 173 PITSKEQWIRITTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
S+ID +++TH HLDH+ +P L K + G V+MT T+ + LL DY++V+
Sbjct: 233 SSIDAVVLTHAHLDHSGMIP-LLFKYGYDGPVYMTPPTRDLMALLQLDYIEVAN 285
>gi|397690632|ref|YP_006527886.1| beta-lactamase domain protein [Melioribacter roseus P3M]
gi|395812124|gb|AFN74873.1| beta-lactamase domain protein [Melioribacter roseus P3M]
Length = 454
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ + +G EVG + Y+ G IL DCGIHP G+ +LP FD ++ +D ++I+H
Sbjct: 2 IKFLSIGGAREVGANSYYLQIDGTGILLDCGIHPRKKGLDSLPLFDLLENYPLDFVIISH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
H DH +LP+ ++K ++ T TK + + L + V + K
Sbjct: 62 AHQDHVGALPFLIKKFPHV-IIYTTPYTKELVSVTLHNAVNILK 104
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRI 147
++MTH T+AI +LL DY K++ E F Q I M ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKV 104
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRI 147
++MTH T+AI +LL DY K++ E F Q I M ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKV 104
>gi|118431090|ref|NP_147298.2| exonuclease [Aeropyrum pernix K1]
gi|116062416|dbj|BAA79487.2| putative exonuclease [Aeropyrum pernix K1]
Length = 671
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDPSAIDVLL 80
+ ++ LG+ EVGRS + + +L D G+ P+ G + PY+ E +D ++
Sbjct: 191 HVRVVGLGSFGEVGRSAILVDTGESKVLLDAGLSPSGYGPDSYPYYWSPEFRVDELDAVV 250
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+H HLDH +LP L K F G V+ T T+ I ++L D + + + + + F+ +D+
Sbjct: 251 ISHAHLDHVGTLP-LLFKYGFRGPVYATPPTRDIMIIVLRDLINLMRKAQGEPPFEPRDV 309
Query: 141 NRSMDRI 147
+++ R+
Sbjct: 310 EKALTRL 316
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLIT 82
+ +I G EVG SC ++ GK IL DCGI S LP F I + ID ++I+
Sbjct: 1 MKLIFCGGAQEVGASCYLVTIDGKNILLDCGIR-LTSSKDTLPDFRLIQENGGIDAIIIS 59
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H H DH +LP + + + ++MTH +K + ++LL D +K+ + E ++ E +
Sbjct: 60 HAHTDHTGALPA-ISRQFPNALIYMTHMSKDLTRVLLYDSLKIMEREPEIPIYAENHVQE 118
Query: 143 SMDRIEVCF 151
+ R VCF
Sbjct: 119 MLGRT-VCF 126
>gi|410721908|ref|ZP_11361230.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
gi|410598026|gb|EKQ52618.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
Length = 634
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EID 72
P+S E + + + LG EVGRS ++M IL DCG++ A S ++ PY + E
Sbjct: 171 PLSMENEWVRLTALGGFREVGRSSIFMQTSNSKILLDCGVNVAGSDDKSSYPYLNVPEFV 230
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I+H HLDH+ LPY + G V+ T T+ + LL D++ ++
Sbjct: 231 LDNLDAVIISHAHLDHSGFLPYLFH-YGYEGPVYCTTPTRDLMTLLQLDHIDIAHREDSP 289
Query: 133 MLFDEQDINRSM 144
+ F+ + + +S+
Sbjct: 290 LPFNVKHVKKSI 301
>gi|124485834|ref|YP_001030450.1| ADP-ribosylation/crystallin J1 [Methanocorpusculum labreanum Z]
gi|124363375|gb|ABN07183.1| beta-lactamase domain protein [Methanocorpusculum labreanum Z]
Length = 636
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 10 LKRRDVPVSREGDQ-LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ R + R+ DQ L + LG +VGR+ +S +L DCG P +G A+ PY
Sbjct: 168 IHRDSIYTGRDHDQWLRLTTLGCCRQVGRAAFLLSTPESKVLIDCGESPGATGAASSPYL 227
Query: 69 D--EIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+ EI P + +D +++TH HLDH+A +P L + + G V+ T AT+ + +L DY+ V
Sbjct: 228 NVPEIYPFTNLDAVVLTHAHLDHSAFIP-LLYRYGYDGPVYTTPATRDLATMLQLDYLDV 286
Query: 126 SK 127
+
Sbjct: 287 NN 288
>gi|385803384|ref|YP_005839784.1| beta-lactamase [Haloquadratum walsbyi C23]
gi|339728876|emb|CCC40055.1| beta-lactamase domain protein [Haloquadratum walsbyi C23]
Length = 538
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L + P G G+EVGRSC ++ DCG+ S P F+++ ID + ITH
Sbjct: 4 LIVTPRGGGDEVGRSCYHLQAGDYDYFIDCGLKQ--SETPEYPLFEDVSQGQIDAVFITH 61
Query: 84 FHLDHAASLPYFLEKTTF--SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDE 137
H+DH LP +FMT T A+ +LL D +++ K ++ F
Sbjct: 62 AHIDHIGGLPVAEHHGLLDDDASIFMTRPTNALASILLHDSLQIHKQETAELNQPQQFTA 121
Query: 138 QDINRSMDRI 147
DI + + RI
Sbjct: 122 TDIEQVLSRI 131
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFSGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDRI 147
++MTH T+AI +LL DY K++ E F Q I M ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKV 104
>gi|408404164|ref|YP_006862147.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364760|gb|AFU58490.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 700
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-Y 59
A+ +P S K + S+E ++ + LG +VGRSC + ++ DCGI+P
Sbjct: 225 QAAVSEPGSAKPQSWSTSKE--EVMLFCLGGVKQVGRSCFIVVTPESKVMLDCGINPGEM 282
Query: 60 SGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKL 117
SG+ A P D D +D ++I H H+DH LP K + G V+ T T + L
Sbjct: 283 SGLNAYPRLDWFNFDLDDLDAVIIGHAHIDHQGFLPALF-KYGYKGPVYCTEPTLPLMTL 341
Query: 118 LLTDYVKVSKVSVEDMLFDEQDIN 141
L D VK++ + + ++ +D+N
Sbjct: 342 LQMDSVKIANSNGTYLPYEARDVN 365
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP- 73
PVS + + + LG EVGRS +S IL DCG++ A S Y E+ P
Sbjct: 173 PVSTKDQWIRVTTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S+ID ++ITH HLDH +P L K + G ++ T T+ + LL DY++V+ +
Sbjct: 233 SSIDAVVITHAHLDHCGIVP-LLFKYGYEGPIYATPPTRDLSALLQLDYIEVANREGKRP 291
Query: 134 LFDEQDINRSMDR 146
+D I ++ R
Sbjct: 292 PYDSALIREALKR 304
>gi|433591224|ref|YP_007280720.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Natrinema pellirubrum DSM 15624]
gi|433306004|gb|AGB31816.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Natrinema pellirubrum DSM 15624]
Length = 612
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 7 PPSLKRRDVPVSREGDQ-LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
PPS DV S +G+ + ++P G EVGRSC + + T L DCG+ +G
Sbjct: 24 PPS--PIDVSDSVDGENPMVVLPRGGAREVGRSCYQVETQQGTYLVDCGLKQGKNGQ--F 79
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYV 123
P ++P +I+ + +TH H+DH+ LP + + ++ T T A+ +LL D +
Sbjct: 80 PDLCGLEPESINAVFLTHAHIDHSGGLPVLESRNLLAPDAKIICTRGTAALTHVLLHDSL 139
Query: 124 KV----SKVSVEDMLFDEQDINRSMDRIE 148
K+ +K D F D+ + R E
Sbjct: 140 KIHQEEAKKPGRDSRFTRNDVEDVLARFE 168
>gi|410697892|gb|AFV76960.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus oshimai JL-2]
Length = 430
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV SC + +G+ +L DCG+ P DP ++D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSCHLLLAEGRRVLLDCGMFQQKEERNRGPL--GFDPRSLDAVLLTH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
HLDH LP + + G V+ T T + +++L D ++V +E+ F+E+D+
Sbjct: 59 AHLDHVGRLPRLF-REGYRGPVYATRGTLLLMRIVLEDALRV----MEEPFFEEKDLE 111
>gi|110667945|ref|YP_657756.1| metal-dependent RNase [Haloquadratum walsbyi DSM 16790]
gi|109625692|emb|CAJ52124.1| beta-lactamase domain protein [Haloquadratum walsbyi DSM 16790]
Length = 538
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L + P G G+EVGRSC ++ DCG+ S P F+++ ID + ITH
Sbjct: 4 LIVTPRGGGDEVGRSCYHLQAGDYDYFIDCGLKQ--SETPEYPLFEDVSQGQIDAVFITH 61
Query: 84 FHLDHAASLPYFLEKTTF--SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDE 137
H+DH LP +FMT T A+ +LL D +++ K ++ F
Sbjct: 62 AHIDHIGGLPVAEHHGLLDDDASIFMTRPTNALASILLHDSLQIHKQETAELNQPQQFTA 121
Query: 138 QDINRSMDRI 147
DI + + RI
Sbjct: 122 TDIEQVLSRI 131
>gi|341581963|ref|YP_004762455.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
gi|340809621|gb|AEK72778.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
Length = 651
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------I 71
+ D + I LG EVGRS + + +L D G++ A A P+F+ +
Sbjct: 185 KSDWIRITGLGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFEAPEFRYVL 244
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ K++
Sbjct: 245 DAGLLDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQKMNGV 304
Query: 132 DMLFDEQDI 140
+ L+ +DI
Sbjct: 305 EPLYRPRDI 313
>gi|390960706|ref|YP_006424540.1| hypothetical protein CL1_0538 [Thermococcus sp. CL1]
gi|390519014|gb|AFL94746.1| hypothetical protein containing KH domain /beta-lactamase-domain
protein [Thermococcus sp. CL1]
Length = 648
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ + + I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 182 KSEWIRITGLGGFREVGRSALLVQTNESYVLVDFGVNIAAMKDPKKAFPHFDAPEFRYVL 241
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ K++
Sbjct: 242 DAGLLDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQKMNGV 301
Query: 132 DMLFDEQDI 140
+ L+ +DI
Sbjct: 302 EPLYRPRDI 310
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 17/103 (16%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ ++PLGAG +G S D P +S ++ F +I ID ++I+H
Sbjct: 3 IEVVPLGAGMHMGYS-------------DARRFPDFSYISKTGNFTDI----IDAVIISH 45
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
FHLDH +LP+F E + G ++MTH TKAI +LL DY K++
Sbjct: 46 FHLDHCGALPFFTEMLGYDGPIYMTHPTKAICPILLEDYRKIT 88
>gi|383451524|ref|YP_005358245.1| hypothetical protein KQS_11340 [Flavobacterium indicum GPTSA100-9]
gi|380503146|emb|CCG54188.1| Protein of unknown function [Flavobacterium indicum GPTSA100-9]
Length = 451
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHF 84
LGA + V S + + +G IL DCG+ + G+ L + + PS ID +L+TH
Sbjct: 6 LGAASTVTGSKILVETQGLKILIDCGM---FQGLKILRELNREPLAVPPSTIDFVLLTHG 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
HLDH LP + F+G++F TH TK I KL+L D K+ + E
Sbjct: 63 HLDHCGWLPKLV-ADGFNGKIFCTHPTKEITKLILEDSAKIQEEEAE 108
>gi|288930974|ref|YP_003435034.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
gi|288893222|gb|ADC64759.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
Length = 617
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGA EV S + IL DCG+ + + DPS ID ++++H H+DH
Sbjct: 7 LGACREVTGSMHLLDTGKTKILLDCGMRQGVDSVEREKHIP-FDPSEIDYIILSHAHIDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDEQDINRSM 144
+ +PY + F GRV T AT+AI +LLL D K+ K E LFDE+D+ M
Sbjct: 66 SGLIPYLYLR-GFRGRVVTTTATRAIAELLLLDSAKIMKEEYEKSNIPPLFDERDVVEVM 124
>gi|448334769|ref|ZP_21523930.1| metal-dependent RNase [Natrinema pellirubrum DSM 15624]
gi|445618672|gb|ELY72230.1| metal-dependent RNase [Natrinema pellirubrum DSM 15624]
Length = 573
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ ++P G EVGRSC + + T L DCG+ +G P ++P +I+ + +TH
Sbjct: 1 MVVLPRGGAREVGRSCYQVETQQGTYLVDCGLKQGKNGQ--FPDLCGLEPESINAVFLTH 58
Query: 84 FHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKV----SKVSVEDMLFDE 137
H+DH+ LP + + ++ T T A+ +LL D +K+ +K D F
Sbjct: 59 AHIDHSGGLPVLESRNLLAPDAKIICTRGTAALTHVLLHDSLKIHQEEAKKPGRDSRFTR 118
Query: 138 QDINRSMDRIE 148
D+ + R E
Sbjct: 119 NDVEDVLARFE 129
>gi|223478352|ref|YP_002582770.1| RNA-metabolising metallo-beta-lactamase family protein
[Thermococcus sp. AM4]
gi|214033578|gb|EEB74405.1| RNA-metabolising metallo-beta-lactamase family [Thermococcus sp.
AM4]
Length = 648
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A + A P+FD +D
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 246 LDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGMEPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 RPRDI 310
>gi|240103777|ref|YP_002960086.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
gi|239911331|gb|ACS34222.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
Length = 651
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A + A P+FD +D
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDEGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 249 LDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGMEPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 RPRDI 313
>gi|116753406|ref|YP_842524.1| beta-lactamase domain-containing protein [Methanosaeta thermophila
PT]
gi|116664857|gb|ABK13884.1| beta-lactamase domain protein [Methanosaeta thermophila PT]
Length = 635
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP- 73
++ + + I LG EVGRSC+ +S I+ DCGI+ S +A PY E+ P
Sbjct: 174 IASKDQWVRISTLGGCREVGRSCMLLSTPESKIIVDCGINVG-SDDSATPYLYVPEVYPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S ID +++TH HLDH+ +P L K + G ++ T T+ +Y LL DY++V+ + +
Sbjct: 233 SQIDAVVLTHAHLDHSGLVP-MLYKYGYEGPIYCTPPTRDLYVLLQLDYIEVAGREGKRL 291
Query: 134 LFDEQDINRSM 144
+D I ++
Sbjct: 292 PYDSSMIREAL 302
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAI 76
+ D + +G EVGRSC+Y+ +L DCG++ A + PY + E ++
Sbjct: 176 DNDWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSL 235
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH+ LPY L + G V+ T T+ + LL D++ ++ E + F+
Sbjct: 236 DAVIITHAHLDHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFN 294
Query: 137 EQDINRSM 144
+ + +S+
Sbjct: 295 VKHVKKSV 302
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDM-LFDEQDI 140
+FHLDH LPY L KT + +MTHATKAIY+ LL D+V+VS S V D L+ ++DI
Sbjct: 13 NFHLDHCGGLPYLLLKTGVRAKCYMTHATKAIYRYLLADFVRVSNSSGVPDQSLYTDRDI 72
Query: 141 NRSMDRIE 148
S+DRI+
Sbjct: 73 IASLDRID 80
>gi|408382616|ref|ZP_11180159.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
gi|407814692|gb|EKF85316.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
Length = 634
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EID 72
PV+ E + + + LG EVGRS ++M IL DCG++ A S ++ PY + E
Sbjct: 171 PVTMENEWVRLTALGGFREVGRSSLFMQTSNSKILMDCGVNVAGSDDKSSYPYLNVPEFV 230
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I+H HLDH+ LPY + G V+ T T+ + LL D++ ++
Sbjct: 231 LDDLDAVIISHAHLDHSGFLPYLFH-YGYEGPVYCTTPTRDLMTLLQLDHIDIAHREDSP 289
Query: 133 MLFDEQDINRSM 144
+ F+ + + +S+
Sbjct: 290 LPFNVKHVKKSI 301
>gi|407465689|ref|YP_006776571.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407048877|gb|AFS83629.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 646
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVL 79
++++ LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D +
Sbjct: 188 EVSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAI 247
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 248 VIGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRTPIYSERD 306
Query: 140 INRSM 144
+ + M
Sbjct: 307 VKQIM 311
>gi|451818434|ref|YP_007454635.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784413|gb|AGF55381.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 851
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLD 87
LG EVG S + + K ILFD GI S ++P F +I +D ++I+H HLD
Sbjct: 9 LGGALEVGGSSILIKINNKNILFDAGIRQNAS-KDSMPNFRDIQTYGGLDAIIISHAHLD 67
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDR 146
H LP + K + +++M + TK + K+LL D +K+ S E L+ E D+ +++R
Sbjct: 68 HIGCLP-IISKEYPNAKIYMNNMTKDLVKVLLYDSLKIMSNREAEIPLYAEVDVENTLNR 126
Query: 147 I 147
I
Sbjct: 127 I 127
>gi|434385192|ref|YP_007095803.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
gi|428016182|gb|AFY92276.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
Length = 885
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 21/152 (13%)
Query: 9 SLKRRDVPV----------SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA 58
SL R +PV +R+ D+L + PLGA +G SC + I+ D G P
Sbjct: 263 SLDRSSIPVDGEASVTPESNRDPDRLIVTPLGAARGIGASCFRVQIGPYEIVMDAGTRP- 321
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL 118
G LP F+ +D +++LITH HLDH +LP F + + TH T+ I ++
Sbjct: 322 -KGSDPLPAFELLDRP--NLILITHAHLDHIGALPIF-HRDFPEVPMICTHGTREIAHVM 377
Query: 119 LTDYVKV----SKVSVED--MLFDEQDINRSM 144
LTD +KV + ED +F D++R++
Sbjct: 378 LTDGLKVQAAQQRQGNEDFGQVFTANDLDRTL 409
>gi|384440508|ref|YP_005655232.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
gi|359291641|gb|AEV17158.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
Length = 431
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDPSAIDVLLIT 82
+ I+P GA EV SC + +G+ +L DCG+ G P+ PS + ++++
Sbjct: 1 MRIVPFGAAREVTGSCHLLLAEGRQVLLDCGMFQGREEGKNQEPF--GFQPSRLAAVVLS 58
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
H HLDH LP + + G V+ T AT + +++L D +KV +E+ FDE+D+
Sbjct: 59 HAHLDHVGRLPKLF-REGYRGPVYATRATALLMRIVLEDALKV----MEEPFFDEEDLE 112
>gi|374633580|ref|ZP_09705945.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Metallosphaera yellowstonensis MK1]
gi|373523368|gb|EHP68288.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Metallosphaera yellowstonensis MK1]
Length = 421
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
Q T+ LG G EVGR+ + +S ++I+ D G++ P + PS + +I+
Sbjct: 2 QYTVKILGGGQEVGRAGIEISNSSESIILDYGVNFNQKDEPNFPLQE--SPSKVSGFVIS 59
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +LP + TT +++ T TK I +L+L D++K+S V F+ ++ +
Sbjct: 60 HAHLDHIGALPIYQISTT--KKIYGTGITKYITELMLKDFIKLSGQKVP---FEWVEVKK 114
Query: 143 SMDRIE 148
+MD E
Sbjct: 115 TMDNFE 120
>gi|254168266|ref|ZP_04875112.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|254168398|ref|ZP_04875243.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289595800|ref|YP_003482496.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
gi|197622679|gb|EDY35249.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|197622775|gb|EDY35344.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289533587|gb|ADD07934.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
Length = 647
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA----ALPY------FDEIDPSA--- 75
LG EVGRS + + +L DCG++ A S A PY +D DP
Sbjct: 185 LGGYREVGRSATLIMTRTSRVLVDCGLNVAVSDKADPWSGAPYLYVPEVWDASDPEKPFK 244
Query: 76 -IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
ID +++TH HLDH +P L K + G V+MT T+ + +LL DYVKV++ + +
Sbjct: 245 HIDAVVVTHAHLDHVGLVP-LLFKYNYDGPVYMTAPTRDLAAMLLIDYVKVAQSEGKKVP 303
Query: 135 FDEQDI 140
++ + I
Sbjct: 304 YESKHI 309
>gi|389852761|ref|YP_006354995.1| mRNA 3'-end processing factor [Pyrococcus sp. ST04]
gi|388250067|gb|AFK22920.1| putative mRNA 3'-end processing factor [Pyrococcus sp. ST04]
Length = 651
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG--MAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKEGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 RPKDI 313
>gi|332159620|ref|YP_004424899.1| mRNA 3'-end processing factor [Pyrococcus sp. NA2]
gi|331035083|gb|AEC52895.1| mRNA 3'-end processing factor, putative [Pyrococcus sp. NA2]
Length = 651
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D GI+ A A P+FD +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLREGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 RPRDI 313
>gi|167045029|gb|ABZ09693.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_APKG8G15]
Length = 643
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFD--EIDPSAIDVL 79
+++++ LG +VGRSC+ ++ +L DCGI+P A S A P D I +D +
Sbjct: 185 EVSLLTLGGFGQVGRSCMLLTTPDSKVLVDCGINPGARSPREAFPRLDWANITLDELDAV 244
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP L K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 245 VIGHAHLDHTGFLPVLL-KYGYKGPIYCTEPTLPMMNLIQLDAIKVAVAQGRTPMYAERD 303
Query: 140 INRSM 144
+ + M
Sbjct: 304 VFQVM 308
>gi|374724464|gb|EHR76544.1| putative metal-dependent RNase [uncultured marine group II
euryarchaeote]
Length = 634
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF---DEIDPSAIDVLLIT 82
+ LG+ EVGR+C +++ I+ D G++ A S +PYF + + +D +++T
Sbjct: 180 VTALGSYREVGRACHFVTTNESRIMIDVGVNIA-SDTDPMPYFTAPEALPLEKLDAVVLT 238
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDHA LP K + G V+ T T+ + LL TDY+KV + +D +DI
Sbjct: 239 HSHLDHAGMLPVLF-KYGYRGPVYCTPPTRDLMLLLQTDYLKVGGAEGKRAPYDMEDIRT 297
Query: 143 SMDRI 147
M +
Sbjct: 298 CMKHV 302
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 RPRDI 313
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 246 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 RPRDI 310
>gi|45358944|ref|NP_988501.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|340624691|ref|YP_004743144.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|45047810|emb|CAF30937.1| Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
gi|339904959|gb|AEK20401.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 422
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I+ S +D ++++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DINDSDVDAVVVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++PYF K ++F T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYFNFK-----KIFCNPPTADLMYNVWKDTVSLSKT------YKEEDIKKSMDVIK 109
>gi|407463310|ref|YP_006774627.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046932|gb|AFS81685.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 646
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSA--IDVL 79
++++ LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D +
Sbjct: 188 EVSLFTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDDLDAV 247
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 248 VIGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYSERD 306
Query: 140 INRSM 144
+ + M
Sbjct: 307 VKQIM 311
>gi|448414471|ref|ZP_21577540.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
gi|445682037|gb|ELZ34461.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
Length = 634
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP-S 74
+ E + + + LG EVGR+ +S IL DCG P G +PY E +P +
Sbjct: 172 THETEWVRVTTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLQAPEANPIA 229
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
A+D +++TH HLDH+A LP L K + G V++T T+ + LL DY+ V+
Sbjct: 230 ALDAVVLTHAHLDHSALLP-LLFKYGYDGPVYLTQPTRDLMGLLQLDYLDVA 280
>gi|212223311|ref|YP_002306547.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
gi|212008268|gb|ACJ15650.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
Length = 648
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------I 71
+ + + I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 182 KSEWIRITGLGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFDAPEFRYVL 241
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ +++
Sbjct: 242 DAGLLDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQQMNGV 301
Query: 132 DMLFDEQDI 140
+ L+ +DI
Sbjct: 302 EPLYRPRDI 310
>gi|386875398|ref|ZP_10117572.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
gi|386806797|gb|EIJ66242.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
Length = 646
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVL 79
++++ LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D +
Sbjct: 188 EVSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAI 247
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 248 VIGHAHLDHTGFLPALC-KYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYAERD 306
Query: 140 INRSM 144
+ + M
Sbjct: 307 VKQIM 311
>gi|255505677|ref|ZP_05347507.3| metallo-beta-lactamase family protein [Bryantella formatexigens DSM
14469]
gi|255266491|gb|EET59696.1| metallo-beta-lactamase domain protein [Marvinbryantia formatexigens
DSM 14469]
Length = 537
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L + +GA +EV SC ++ GK IL DCG+ + +P + + ID++ +TH
Sbjct: 4 LKLTFIGATHEVTGSCTFLEACGKNILIDCGMEQGINSFENVPL--PVAAADIDMVFLTH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
H+DH+ LP L K F G++F T AT+ + +++L D + +F+ + NR
Sbjct: 62 AHIDHSGKLP-LLYKNGFRGQIFATCATERLCRIMLRDSAHI-------QMFEAEWRNRK 113
Query: 144 MDR 146
R
Sbjct: 114 AKR 116
>gi|282165070|ref|YP_003357455.1| hypothetical protein MCP_2400 [Methanocella paludicola SANAE]
gi|282157384|dbj|BAI62472.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 636
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP- 73
P++ + + I LG EVGRS +S IL DCG+ A + Y E+ P
Sbjct: 173 PITSKEQWIRITTLGGCKEVGRSSFLLSTPETRILIDCGVSTGAEANGTPYLYVPEVSPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
S ID +++TH HLDH +P L K + G V+MT T+ + LL DY++V+
Sbjct: 233 SNIDAVVLTHAHLDHCGMIP-LLYKYGYEGPVYMTPPTRDLMALLQLDYIEVAN 285
>gi|397651897|ref|YP_006492478.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
gi|393189488|gb|AFN04186.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
Length = 648
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D GI+ A A P+FD +
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D+V++ + + ++ L+
Sbjct: 246 LDAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 KPKDI 310
>gi|448685512|ref|ZP_21693504.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445782123|gb|EMA32974.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 640
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|18977777|ref|NP_579134.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
gi|18893520|gb|AAL81529.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
Length = 651
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D GI+ A A P+FD +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKEGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D+V++ + + ++ L+
Sbjct: 249 LDAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 KPKDI 313
>gi|345867698|ref|ZP_08819703.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
gi|344047865|gb|EGV43484.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
Length = 461
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSA 75
++ +Q+ + LGA V S + G +L DCG+ + L + D ID A
Sbjct: 2 INNTENQVKVTFLGASQVVTGSKYLLETYGLNVLIDCGMFQGLKELRELNWRDLSIDVPA 61
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
IDV+L+TH HLDH LP + K FSG++ T T AI +++L D K+ + S E
Sbjct: 62 IDVVLLTHGHLDHVGYLPRLV-KQGFSGKIIGTAPTLAIAEIILKDSAKIHEESAE 116
>gi|384914765|ref|ZP_10015517.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Methylacidiphilum fumariolicum SolV]
gi|384527382|emb|CCG91385.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Methylacidiphilum fumariolicum SolV]
Length = 457
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSY-KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+ I L NE+G + ++ + + I+ D G+HP G A P F ++ +D LLI+
Sbjct: 1 MKFINLTRSNEIGANSYFLDFGQDGRIILDAGLHPKIEGELATPNFQSLEDYPVDCLLIS 60
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-----SKVSVEDM-LFD 136
H H DH SLP FL K +VF++ T + LL + V+V +++ + + L+
Sbjct: 61 HAHHDHTGSLPLFLRKYP-KLKVFLSEPTYYLTPPLLHNSVEVMLKQRAELQIPEYPLYT 119
Query: 137 EQDINRSMDRIEVCFLS 153
++I+R +R + C ++
Sbjct: 120 HKEIDRCTERWQACHIN 136
>gi|448681732|ref|ZP_21691823.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445767602|gb|EMA18705.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|448636727|ref|ZP_21675175.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|445765033|gb|EMA16172.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|14591202|ref|NP_143278.1| mRNA 3'-end processing factor [Pyrococcus horikoshii OT3]
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
gi|3257827|dbj|BAA30510.1| 651aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 651
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGL 248
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 249 LDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
Query: 136 DEQDI 140
+DI
Sbjct: 309 RPRDI 313
>gi|161529235|ref|YP_001583061.1| beta-lactamase domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160340536|gb|ABX13623.1| beta-lactamase domain protein [Nitrosopumilus maritimus SCM1]
Length = 646
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSA--IDVL 79
++++ LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D +
Sbjct: 188 EVSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNLTLDDLDAV 247
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 248 VIGHAHLDHTGFLPTLC-KYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYSERD 306
Query: 140 INRSM 144
+ + M
Sbjct: 307 VKQIM 311
>gi|78484370|ref|YP_390295.1| beta-lactamase-like [Thiomicrospira crunogena XCL-2]
gi|78362656|gb|ABB40621.1| beta-lactamase-like protein [Thiomicrospira crunogena XCL-2]
Length = 465
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 26 IIPLGAGNEVGRSCVYMSYK-GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHF 84
I GA V SC ++ K G IL DCG+ Y+ A F DP +DVLLITH
Sbjct: 4 IQSFGAAETVTGSCHFLQLKQGPQILVDCGMFQGYAEKRAYEDFG-FDPKKVDVLLITHA 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
HLDH +P + K F GR+ AT I +++L D K+
Sbjct: 63 HLDHVGRIPKLV-KEGFKGRIISLRATIDIMEVILMDSAKI 102
>gi|55378101|ref|YP_135951.1| mRNA 3'-end processing factor-like protein [Haloarcula marismortui
ATCC 43049]
gi|448648471|ref|ZP_21679602.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
gi|55230826|gb|AAV46245.1| mRNA 3'-end processing factor-like [Haloarcula marismortui ATCC
43049]
gi|445775572|gb|EMA26582.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|448629175|ref|ZP_21672574.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445757741|gb|EMA09082.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|344212168|ref|YP_004796488.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
gi|343783523|gb|AEM57500.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
Length = 640
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P+++D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSLDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|330508618|ref|YP_004385046.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
gi|328929426|gb|AEB69228.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
Length = 635
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP- 73
++ + + I LG EVGRSC+ +S I+ DCGI+ S +A PY E+ P
Sbjct: 174 IASKDQWVRITTLGGCREVGRSCMLLSTPESRIIIDCGINVG-SDDSATPYLYVPEVYPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+ ID +++TH HLDHA +P L K + G ++ T T+ ++ LL DY++++ +
Sbjct: 233 NQIDAVVLTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIEIAGREGNRL 291
Query: 134 LFDEQDINRSM 144
+D I ++
Sbjct: 292 PYDSGMIREAL 302
>gi|57641363|ref|YP_183841.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus kodakarensis KOD1]
gi|57159687|dbj|BAD85617.1| cleavage and polyadenylation specficity factor subunit homolog
[Thermococcus kodakarensis KOD1]
Length = 648
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +D
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 246 LDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 RPKDI 310
>gi|296109857|ref|YP_003616806.1| KH-domain/beta-lactamase-domain protein [methanocaldococcus
infernus ME]
gi|295434671|gb|ADG13842.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
infernus ME]
Length = 631
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+ + +L DCG++ AY P FD E +D ++ITH HL
Sbjct: 182 LGGAREVGRSCLLLQTPDTKVLLDCGVNIAYE-EKMYPQFDAPEFSIEDLDAVIITHAHL 240
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH LP + + G V+ T T+ + LL DY+ +++ + + F ++I +
Sbjct: 241 DHCGFLPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLDIAEKEGKPVPFSSKEIKECVKH 299
Query: 147 I 147
+
Sbjct: 300 V 300
>gi|312621851|ref|YP_004023464.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202318|gb|ADQ45645.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 821
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + GK IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTH-ATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDIN 141
HLDH SLP + + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLPLIARE--YPNIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVE 116
Query: 142 RSMDR 146
+DR
Sbjct: 117 DLLDR 121
>gi|254444141|ref|ZP_05057617.1| RNA-metabolising metallo-beta-lactamase family [Verrucomicrobiae
bacterium DG1235]
gi|198258449|gb|EDY82757.1| RNA-metabolising metallo-beta-lactamase family [Verrucomicrobiae
bacterium DG1235]
Length = 466
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGI--HPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA V S + +GK IL DCG+ P + + F +DP+ IDV+L+TH H+
Sbjct: 8 LGAAGTVTGSRHLVETRGKRILVDCGLFQGPKRNRLKNWDPF-PVDPNTIDVVLLTHAHV 66
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------------SKVSVEDM 133
DH LP + + F GR++ TH T + ++LL D + SK S
Sbjct: 67 DHIGYLPRLV-RDGFHGRIYATHPTVELVRILLADTAHLQEEEAKYANKKGYSKHSPALP 125
Query: 134 LFDEQDINRSMD 145
LF ++D R+MD
Sbjct: 126 LFTQRDAERAMD 137
>gi|336122441|ref|YP_004577216.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856962|gb|AEH07438.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 427
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI-----HPAYSGMAALPYFDEIDPSAIDV 78
+ I+ G EVGRSC+ + I DCG+ +P Y P FD+I P A+
Sbjct: 1 MDILFRGGAMEVGRSCIEVRSDKSNIFLDCGVKLSEDNPEY------PVFDKIHPDAV-- 52
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++H HLDH SLP L V+ T TKAI K LL D +K+ ++ F++
Sbjct: 53 -FVSHAHLDHTGSLP-ILSHLHMHCPVYTTSMTKAITKELLRDSLKIGIEENRELPFNKG 110
Query: 139 DINR 142
DIN
Sbjct: 111 DINN 114
>gi|294495430|ref|YP_003541923.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666429|gb|ADE36278.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
Length = 637
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLITHFHL 86
LG EVGRSC +S I+ DCG++ M Y E+ P + ID ++ITH HL
Sbjct: 186 LGGCREVGRSCFLLSTPESKIMIDCGVNVGSDDDMTPYLYIPEVQPLNQIDAVVITHAHL 245
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
DH +P L K + G ++ TH T+ + LL D++ V+ + + ++ D+ ++
Sbjct: 246 DHQGLVP-LLYKYGYDGPIYCTHPTRDLMVLLELDFIDVAAKDGKRIPYESADVRNAL 302
>gi|134045242|ref|YP_001096728.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132662867|gb|ABO34513.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 422
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K +L DCG+ P+ +G+ +I+ S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKVLIDCGMDPSDNGLP------DINDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++PYF K +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYFNFK-----KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIK 109
>gi|150388612|ref|YP_001318661.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
gi|149948474|gb|ABR47002.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
Length = 543
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
GA V S V +S IL DCG+ + + AL Y + DP ID LL++H H+D
Sbjct: 6 FGAAKVVTGSNVLISTDKHKILLDCGMFQGSNELEALNYEPFQYDPKEIDFLLLSHTHID 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+ +P + K F+G++F T ATK + +++L D + + VE
Sbjct: 66 HSGRIPKLV-KEGFNGKIFCTKATKDLSEIMLVDSGHIQQSDVE 108
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 53/156 (33%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI------- 76
+ + LGAG +VGRSCV +++ + ++ DCG H + P + P +
Sbjct: 1 MKVTILGAGQDVGRSCVLLTFPTRRLILDCGAHCGFVDHKRYPALQMLGPDGVYEHQLEI 60
Query: 77 ----------------------------------------------DVLLITHFHLDHAA 90
D +I+HFHLDH
Sbjct: 61 LEKTYLGSQTERQGGASDGPIEDPTQKAVLMRVAMERTLNDLTNTLDCAIISHFHLDHVG 120
Query: 91 SLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+LP+ E+ F+G V+MT TKA+ +LL D +V+
Sbjct: 121 ALPFLTEQLKFNGPVYMTWPTKALSPILLRDSAQVT 156
>gi|302348117|ref|YP_003815755.1| exonuclease [Acidilobus saccharovorans 345-15]
gi|302328529|gb|ADL18724.1| Putative exonuclease [Acidilobus saccharovorans 345-15]
Length = 674
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I LG+ EVGRSC+ + IL D G + G A P FD E+ +D ++I+H
Sbjct: 197 ITGLGSFGEVGRSCILIDTSESKILLDVGFAQSGFGPDAYPMFDAPELRLDELDAVVISH 256
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
H+DH P L K + G ++MT AT+ I L+L D++ +
Sbjct: 257 AHMDHVGLAP-MLYKYGYRGPIYMTPATRDIATLMLQDFINL 297
>gi|257388099|ref|YP_003177872.1| beta-lactamase [Halomicrobium mukohataei DSM 12286]
gi|257170406|gb|ACV48165.1| beta-lactamase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 640
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILERVGRQINRPTTDDADWVRLTTLGCCREVGRAAFILSTPDSRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P +ID +++TH HLDH+A +P K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPQSIDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVS 126
LL DY+ V+
Sbjct: 276 GLLQLDYLDVA 286
>gi|315231930|ref|YP_004072366.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
gi|315184958|gb|ADT85143.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
Length = 648
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ + + I LG EVGRS + + +L D GI+ A A P+FD +
Sbjct: 182 KSEWIRITGLGGFREVGRSALLVQTNESFVLVDFGINVAALNDPKKAFPHFDAPEFRYVL 241
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+ +D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + +
Sbjct: 242 NEGLLDAIIITHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGA 301
Query: 132 DMLFDEQDI 140
+ L+ +DI
Sbjct: 302 EPLYKPKDI 310
>gi|386854313|ref|YP_006258693.1| Beta-lactamase domain protein [Deinococcus gobiensis I-0]
gi|380002642|gb|AFD27829.1| Beta-lactamase domain protein [Deinococcus gobiensis I-0]
Length = 541
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I LG +EVG S K +L D G+ P G AALP + + +++TH
Sbjct: 1 MQFIGLGGTDEVGASSYLYLLKEGNLLIDAGLRPGQVGEAALPKLEILGEHPPTAMVLTH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH A +P + + R++ T AT I L+L D +KVS M F +++ R+
Sbjct: 61 AHLDHVAGIPVVIRRFP-DLRIYCTEATARIAGLVLADTLKVSTEQGFPM-FSPEELKRT 118
Query: 144 MDRI 147
++R+
Sbjct: 119 LERL 122
>gi|337284211|ref|YP_004623685.1| mRNA 3'-end processing factor [Pyrococcus yayanosii CH1]
gi|334900145|gb|AEH24413.1| mRNA 3'-end processing factor, putative [Pyrococcus yayanosii CH1]
Length = 648
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG--MAALPYFDE------IDPSA 75
+ I LG EVGRS + + +L D G++ A A P+FD +
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + ++ L+
Sbjct: 246 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQEPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 RPRDI 310
>gi|409095356|ref|ZP_11215380.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus zilligii AN1]
Length = 648
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSA 75
+ + LG EVGRS + + +L D G++ A A P+FD +D
Sbjct: 186 IRVTGLGGFREVGRSALLVQTDESYVLVDFGVNIASLKDPTKAYPHFDAPEFRYVLDEGL 245
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 246 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLY 305
Query: 136 DEQDI 140
+DI
Sbjct: 306 RPRDI 310
>gi|392417361|ref|YP_006453966.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Mycobacterium chubuense NBB4]
gi|390617137|gb|AFM18287.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Mycobacterium chubuense NBB4]
Length = 464
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAI 76
+R G +LT+ LGA V S + G+ IL DCG+ + L + +DPS I
Sbjct: 8 ARNG-ELTLRSLGAAGTVTGSKHLLESNGRRILVDCGLFQGVKNLRELNWEPLAVDPSGI 66
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV------------- 123
D +++TH HLDH LP + +T F G + T AT A+ ++L D
Sbjct: 67 DAVVVTHAHLDHTGYLPRLV-RTGFRGPILCTEATAAVADIILRDSAYLQERDAAFLNKH 125
Query: 124 KVSKVSVEDMLFDEQDINRSMD 145
K SK L+D D R+++
Sbjct: 126 KASKHHPALPLYDSDDARRAIE 147
>gi|150401471|ref|YP_001325237.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150014174|gb|ABR56625.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 426
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 24 LTIIPLGAG-NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+TI+ G +++G SCV + K IL DCG++P+ + +LP +I+P+ ID ++++
Sbjct: 1 MTIVRFHGGCHQIGMSCVEIDTKKSKILVDCGMNPSDN---SLP---KINPNDIDAVVVS 54
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH ++PYF F ++ T + + +L D K+SK + E++I +
Sbjct: 55 HSHLDHCGAVPYF----NFKNPIYSTIPSVDLMYILWKDISKLSKT------YPEENIQK 104
Query: 143 SMDRIEVC 150
+M+ I+
Sbjct: 105 AMNNIKAV 112
>gi|424811901|ref|ZP_18237141.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756123|gb|EGQ39706.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 619
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 17 VSREGDQ---LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD-- 69
+ RE D + + LG +VGRSCV + + +L DCGI P+ P+ D
Sbjct: 159 IRRESDDEEWVRVSSLGGFRQVGRSCVLVQSETSNVLLDCGIDPSAEEGSRNNFPHLDAP 218
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E+D A+D ++++H H+DH +PY L + + G ++ T T+ + + DY+ +S
Sbjct: 219 ELDIPALDAVVLSHAHMDHMGMIPY-LYRMGYDGPLYCTAPTRDLMIMQTLDYIDISHSE 277
Query: 130 VEDMLFDEQDINRSMDR 146
++ + I +++ R
Sbjct: 278 QASAPYESKHIKQAVKR 294
>gi|336121871|ref|YP_004576646.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856392|gb|AEH06868.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 422
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 71/126 (56%), Gaps = 18/126 (14%)
Query: 24 LTIIPLGAG-NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+TII G +++G SCV + K IL DCG++P+ + + + I+PS +D ++++
Sbjct: 1 MTIIRFHGGCHQIGMSCVEIDTKKSKILLDCGMNPSDNRLPS------INPSDMDAVVVS 54
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH ++PYF K +++ T T + ++ D K+SK + E+DI +
Sbjct: 55 HAHLDHCGAVPYFNFK-----KIYCTVPTVDLMYIVWKDISKLSKT------YGEKDIKQ 103
Query: 143 SMDRIE 148
+M+ IE
Sbjct: 104 AMESIE 109
>gi|257075969|ref|ZP_05570330.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Ferroplasma acidarmanus fer1]
Length = 637
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI-------HPAYSGMAALPYFDEIDP-SA 75
+ I LG EVGRS +S +L DCG+ HP A Y EI P ++
Sbjct: 177 IRITALGGHREVGRSATLISTNNSKVLVDCGMININDPEHPWEE--APYLYAPEIQPFTS 234
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH HLDH+ LP L K ++G V+ T T+ + LL DY+KVS + +
Sbjct: 235 LDAVVLTHAHLDHSGLLP-LLFKYGYTGPVYSTAPTRDLAALLQNDYLKVSHSENHKLSY 293
Query: 136 DEQDINRSM 144
+ + + +
Sbjct: 294 ESKHVREEL 302
>gi|218134096|ref|ZP_03462900.1| hypothetical protein BACPEC_01986 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991471|gb|EEC57477.1| metallo-beta-lactamase domain protein [[Bacteroides] pectinophilus
ATCC 43243]
Length = 535
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+ GK IL DCG+ LP I + +D LL+TH H+
Sbjct: 6 LGADHEVTGSCHYLQACGKNILVDCGMEQGNDVYENQELP----IPAADVDYLLLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ +P K F GR+F T+ATK + ++L D + +F+ + NR +R
Sbjct: 62 DHSGLIPLLYAK-GFRGRIFTTNATKQLCDIMLRDSAHI-------QMFEAEWRNRKAER 113
>gi|159905675|ref|YP_001549337.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159887168|gb|ABX02105.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 422
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DIKDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++PYF K +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYFNFK-----KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIK 109
>gi|432328821|ref|YP_007246965.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
gi|432135530|gb|AGB04799.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
Length = 647
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPA-------YSGMAAL---PYFDEIDPSA--- 75
LG EVGRS + + +L DCG+ A +SG L +D+ DP
Sbjct: 185 LGGYREVGRSATLLMTRTSRVLVDCGLDVAAVNQEGPWSGAPYLYVPEVWDQSDPENPFK 244
Query: 76 -IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
ID +++TH HLDH +P L K + G V+MT T+ + +LL DYVKV++ + +
Sbjct: 245 HIDAVVVTHAHLDHVGLVP-LLFKYNYDGAVYMTAPTRDLAAMLLIDYVKVAQSEGKKVP 303
Query: 135 FDEQDI 140
++ + I
Sbjct: 304 YESKHI 309
>gi|84489102|ref|YP_447334.1| exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372421|gb|ABC56691.1| predicted exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 635
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFD--EIDPSAI 76
+ D + + LG EVGRSC+++ ++ DCG++ A A P+ + E + +
Sbjct: 175 DNDWVRLTSLGGFREVGRSCLFLQTPNSKVILDCGVNVAGIDEKTAYPFLNVPEFNLQDL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH +PY L + G + T T+ + LL D++ +S + + F+
Sbjct: 235 DAVIITHAHLDHTGFVPY-LYHYGYDGPTYCTTPTRDMMTLLQQDHLDISHREDKPLPFN 293
Query: 137 EQDINRSMDR 146
+D+ ++++
Sbjct: 294 IKDVKETINK 303
>gi|312135668|ref|YP_004003006.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
gi|311775719|gb|ADQ05206.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
Length = 821
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + GK IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTH-ATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDIN 141
HLDH SLP + + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLPLIARE--YPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVE 116
Query: 142 RSMDR 146
+DR
Sbjct: 117 DLLDR 121
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLD 87
LG EVGRSC + IL DCG++ + + Y E+ P +ID ++ITH HLD
Sbjct: 185 LGGSREVGRSCYLLQTPESKILIDCGVNVSNIQHSPYLYVPEVQPLDSIDAVVITHAHLD 244
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
H +P L K + G ++MT T+ + LL D+++V+
Sbjct: 245 HCGLVP-ILYKYGYKGPIYMTPPTRDLMVLLQLDFIEVA 282
>gi|448671829|ref|ZP_21687634.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
gi|445764965|gb|EMA16108.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
Length = 640
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 18/149 (12%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + D + + LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDILQRVGRQINRPTTADEDWVRLTTLGCCREVGRASFILSTPESRILIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P++ID +++TH HLDH+A +P K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPNSIDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLM 275
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
LL DY+ V+ ++ Q + ++
Sbjct: 276 GLLQLDYLDVASKEGRTPPYESQQVRDAL 304
>gi|456735966|gb|EMF60692.1| Metallo-beta-lactamase family protein, RNA-specific
[Stenotrophomonas maltophilia EPM1]
Length = 466
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM---AALPYFDEIDPSAI 76
+ +L++ LG + V S + G ++ DCG+ Y + LP+ +DP++I
Sbjct: 9 DATRLSVSFLGGTDTVTGSRYLIEAGGARVMVDCGLFQGYKPLRLRNWLPF--PVDPASI 66
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV----------- 125
D +++TH HLDH+ LP + K F G V+ T AT+ + ++LL D ++
Sbjct: 67 DAVVLTHAHLDHSGYLPRLM-KQGFHGSVWCTPATRDLCRILLPDAARLLEEEARHANQR 125
Query: 126 --SKVSVEDMLFDEQDINRSMDRIEVCFLS 153
SK + L+ E+D R +D + V + S
Sbjct: 126 GSSKHHPAEPLYTEEDAQRCLDLMRVVYFS 155
>gi|302872375|ref|YP_003841011.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575234|gb|ADL43025.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
Length = 821
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + GK IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQVLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTH-ATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDIN 141
HLDH SLP + + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLPLIARE--YPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVE 116
Query: 142 RSMDR 146
+DR
Sbjct: 117 DLLDR 121
>gi|150402550|ref|YP_001329844.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150033580|gb|ABR65693.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 422
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DITDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++PYF K +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYFNFK-----KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIK 109
>gi|365169819|ref|ZP_09360966.1| hypothetical protein HMPREF1006_01842 [Synergistes sp. 3_1_syn1]
gi|363618539|gb|EHL69886.1| hypothetical protein HMPREF1006_01842 [Synergistes sp. 3_1_syn1]
Length = 551
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE---IDPSAIDVLLITHFH 85
LGA EV S + G +L DCG H GM + +E P+ ID +L+TH H
Sbjct: 6 LGAAGEVTGSNYMIETDGYKVLVDCGTH---QGMDEEKHEEEKFPFSPADIDAVLLTHAH 62
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+DH+ +P L K F G+V+ THAT + ++LL D + + E
Sbjct: 63 IDHSGKIP-LLVKQGFKGKVYCTHATSQLIEILLRDSAHIMREDAE 107
>gi|375082947|ref|ZP_09729988.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
gi|374742377|gb|EHR78774.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
Length = 651
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ D + I LG EVGRS + + +L D G++ A P+FD +
Sbjct: 185 KSDWIRITGLGGFREVGRSALLLQTNESFVLVDFGVNVAALNDPKKGFPHFDAPEFTYVL 244
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + +
Sbjct: 245 KEGLLDAIIITHAHLDHSGLLPYLFRYNLFDGPIYATPPTRDLMVLLQKDFIEIQQSNGI 304
Query: 132 DMLFDEQDI 140
D L+ +DI
Sbjct: 305 DPLYRMRDI 313
>gi|269102108|ref|ZP_06154805.1| metallo-beta-lactamase family protein RNA-specific [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162006|gb|EEZ40502.1| metallo-beta-lactamase family protein RNA-specific [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 475
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKG----KTILFDCGIHPAYSGMAALPYFD-EIDPSAI 76
D++ II GA + V SC + + ++L DCG+ + G + P D E D S +
Sbjct: 2 DKIDIIHHGAKDGVTGSCHQLQIEQDGFTSSLLIDCGL---FQGRESRPNLDIEFDISTV 58
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
+ LLITH H+DH +P+ L K F+G +F T A+ A+ L+L D +K+ + +
Sbjct: 59 EALLITHCHIDHIGRIPWLLAK-GFTGPIFTTEASAALLPLMLEDSLKLQ------LGLN 111
Query: 137 EQDINRSMDRIE 148
++ + ++RIE
Sbjct: 112 KKQCQKFIERIE 123
>gi|226323676|ref|ZP_03799194.1| hypothetical protein COPCOM_01451 [Coprococcus comes ATCC 27758]
gi|225207860|gb|EEG90214.1| metallo-beta-lactamase domain protein [Coprococcus comes ATCC
27758]
Length = 539
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC Y+ GK IL DCG+ P +P I+PS ID +L+TH H+
Sbjct: 6 IGAAHEVTGSCHYLEACGKHILIDCGLEQGPDLYENQEIP----INPSMIDYILLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ +P L K F G + T AT + ++L D + + E
Sbjct: 62 DHSGKIP-LLVKNGFKGEIICTFATSDLCSIMLRDSAHIQESEAE 105
>gi|428308354|ref|YP_007119299.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249902|gb|AFZ15677.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 822
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L++ PLGA +G SC + I+ D G P G LP F+ + +P ++
Sbjct: 243 EQDKLSVTPLGAARGIGASCFRVLIGPYEIVLDAGTRP--KGDKPLPAFEYLRNP---NL 297
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFD 136
+LI+H H DH +LP F K + + T T+ I ++LTD +K+ + + ED LFD
Sbjct: 298 ILISHAHQDHIGALPTF-HKMFPACPMICTVGTRQIADVMLTDCLKIQQHN-EDFQELFD 355
Query: 137 EQDINRSMDRIE 148
E D+N+++ +++
Sbjct: 356 ENDLNQTIFQLQ 367
>gi|428304113|ref|YP_007140938.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245648|gb|AFZ11428.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 804
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L++ PLGA +G SC + I+ D G P G LP F+ + +P ++
Sbjct: 225 EQDKLSVTPLGAARGIGASCFRVLIGPYEIVLDAGTRP--KGDKPLPAFEYLRNP---NL 279
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFD 136
+LI+H H DH +LP F K + + T T+ I ++LTD +K+ + + ED LFD
Sbjct: 280 ILISHAHQDHIGALPTF-HKMFPACPMICTVGTRQIADVMLTDCLKIQQHN-EDFQELFD 337
Query: 137 EQDINRSMDRIE 148
E D+N+++ +++
Sbjct: 338 ENDLNQTIFQLQ 349
>gi|357419642|ref|YP_004932634.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
gi|355397108|gb|AER66537.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
Length = 537
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
LGA EV S + G+ +L DCG++ A SG +P + DPS ID +L+TH HLD
Sbjct: 6 LGAAQEVTGSNYLLEVDGRRVLVDCGLYQGANSGDNHVPL--DYDPSTIDAVLLTHAHLD 63
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE--------------DM 133
H +P L K + G V+ T T + +L D + K E +
Sbjct: 64 HTGKVP-LLVKQGYKGPVYGTRPTLELCDILWRDAAHIQKEDAEWQSRKNMRKGLPPVEP 122
Query: 134 LFDEQDINRSMDRI 147
L+ +D+ RS++R+
Sbjct: 123 LYTLEDVERSLERL 136
>gi|222529916|ref|YP_002573798.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456763|gb|ACM61025.1| beta-lactamase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 821
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + GK IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
HLDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVED 117
Query: 143 SMDR 146
+DR
Sbjct: 118 LLDR 121
>gi|291295570|ref|YP_003506968.1| beta-lactamase domain-containing protein [Meiothermus ruber DSM
1279]
gi|290470529|gb|ADD27948.1| beta-lactamase domain protein [Meiothermus ruber DSM 1279]
Length = 447
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE---IDPSAIDVLL 80
+ I P GA V SC + ++ +L DCG AY G A +E DP +D +L
Sbjct: 1 MRITPFGAAQTVTGSCHLVEHQNYRLLLDCG---AYQG-ADEERNEEPFGFDPRTVDAVL 56
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML------ 134
I+H H DH LP + + F+GRV++T T+ I ++L D +K+ + E ++
Sbjct: 57 ISHAHNDHIGRLPMLI-RQGFAGRVYVTEPTRLILPVILEDALKLMQEERERLVRKGREA 115
Query: 135 ----FDEQDINRSMDRIEVC 150
++E D+ R+EV
Sbjct: 116 PPLPWNESDLAELYTRLEVV 135
>gi|48477759|ref|YP_023465.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
gi|48430407|gb|AAT43272.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
Length = 638
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI-------HPAYSGMAALPYFDEIDP-SA 75
+ I LG EVGRS +S IL DCG+ HP A Y EI P S+
Sbjct: 179 IRITALGGHREVGRSATLISTNNSKILVDCGMINVNDPDHPWEE--APYLYVPEIQPFSS 236
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+D +++TH HLDH+ +P L K + G ++ T T+ + LL DY+KV+
Sbjct: 237 LDAVILTHAHLDHSGLVP-LLYKYGYDGPLYTTAPTRDLAALLQNDYIKVA 286
>gi|152993758|ref|YP_001359479.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. NBC37-1]
gi|151425619|dbj|BAF73122.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. NBC37-1]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 25 TIIPLGAGNEVGRSC-VYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
T++ GA V SC ++ G IL DCG+ FD +PS +D LL+TH
Sbjct: 3 TVVSYGAAEVVTGSCHLFTIDGGPQILVDCGMFQGQEEERNYGPFD-FNPSEVDYLLVTH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
HLDH +P + K F+G+++ THAT + +++L D K+ K
Sbjct: 62 AHLDHVGRIPKLV-KEGFTGKIYATHATHDLAEIILLDSAKIMK 104
>gi|448302487|ref|ZP_21492466.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
gi|445581153|gb|ELY35515.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
Length = 637
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-IDV 78
E D + + LG EVGR+ +S IL DCG P G E +P A +D
Sbjct: 178 ETDWVRVTTLGCCREVGRASFVLSTPETRILVDCGDKPGAEGDVPHLQVPEANPIADLDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A LP L K + G V+MT T+ + LL DY+ V+
Sbjct: 238 VVLTHAHLDHSALLP-LLFKYGYDGPVYMTAPTRDLIGLLQLDYLDVA 284
>gi|428304260|ref|YP_007141085.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245795|gb|AFZ11575.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 782
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPS 74
P S ++L + PLGA +G SC + I+ D G P G LP F+ + +P
Sbjct: 188 PDSPHKNRLIVTPLGAARSIGASCFRVLIGPYEIVLDAGTRP--KGSNPLPAFEHLKNP- 244
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE-DM 133
+++LITH H DH +LP F ++ + + T T+ I ++LTD +KV + + + +
Sbjct: 245 --NLILITHAHQDHIGALPVFHQRFPATP-MICTAGTREIAHVMLTDCLKVQQSNEDFEQ 301
Query: 134 LFDEQDINRSMDRIEV 149
LFDE D+++++ +++
Sbjct: 302 LFDEIDLDQTLFQLQT 317
>gi|385806125|ref|YP_005842523.1| putative exonuclease [Fervidicoccus fontis Kam940]
gi|383795988|gb|AFH43071.1| putative exonuclease [Fervidicoccus fontis Kam940]
Length = 428
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+E +++ I LG+G EVGR+ + + Y +++L D G++ + +P I P +D
Sbjct: 2 KEREKMQIKILGSGKEVGRAAISVEYNNRSVLLDYGVNFDENDNPVMPL--HISPIKLDG 59
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
++++H HLDH + P ++ + F T T+ + +L+L D++K+S
Sbjct: 60 VVLSHVHLDHIGAAPLLY--SSVKPKAFSTRVTRHLARLMLEDFLKLS 105
>gi|429217522|ref|YP_007175512.1| KH-domain/beta-lactamase-domain-containing protein [Caldisphaera
lagunensis DSM 15908]
gi|429134051|gb|AFZ71063.1| KH-domain/beta-lactamase-domain protein [Caldisphaera lagunensis
DSM 15908]
Length = 667
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLI 81
+ +I LG+ EVGRS + + IL D G + + A P+FD E +D ++I
Sbjct: 182 IRVIGLGSFGEVGRSSILLDTGESKILLDAGFAQSGYSVDAYPHFDAPEFRLEDLDAIVI 241
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+H H+DH LP L K + G +MT T+ I L+L D++ + ++ F +DIN
Sbjct: 242 SHAHMDHMGLLP-ILYKYGYRGPAYMTPPTRDITVLMLKDFMDLFVREGKEPPFTMKDIN 300
Query: 142 RSMDR 146
+ R
Sbjct: 301 TMLTR 305
>gi|160933971|ref|ZP_02081358.1| hypothetical protein CLOLEP_02833 [Clostridium leptum DSM 753]
gi|156866644|gb|EDO60016.1| metallo-beta-lactamase domain protein [Clostridium leptum DSM 753]
Length = 539
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDV 78
G + + LGA +EV SC + GKTIL DCG+ P +P + PS+ID
Sbjct: 5 GFSMKLTFLGAAHEVTGSCYLLEACGKTILIDCGMEQGPDEYENQEIP----VSPSSIDW 60
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+L+TH H+DH+ LP L F G++F T AT + ++L D + +F+ +
Sbjct: 61 VLLTHAHIDHSGRLP-LLYAHGFRGKIFATGATCDLCDIMLRDSAHI-------QMFEAE 112
Query: 139 DINRSMDR 146
NR R
Sbjct: 113 WRNRKAKR 120
>gi|339442748|ref|YP_004708753.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium sp. SY8519]
gi|338902149|dbj|BAK47651.1| predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Clostridium sp. SY8519]
Length = 531
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+S +L DCG+ P +P ++PS+ID + +TH H+
Sbjct: 6 LGAAHEVTGSCHYLSIGDYNVLVDCGMEQGPDIYENQDIP----VNPSSIDYIFVTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP ++ F GR+F + AT + ++L D + + E
Sbjct: 62 DHSGLLPLITQR-GFRGRIFASTATAQLCNIMLKDSAHIQETEAE 105
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----IDV 78
Q+++ LG G +G+SC +S + +L DCG ALP F ++ S I
Sbjct: 2 QISLTVLGGGQSIGKSCFLLSVGDQHVLLDCGSFVGKDTKKALPDFSKLPKSMTVNDITA 61
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
+LI+HFH+DH L Y E+ + G ++ + T+A+
Sbjct: 62 VLISHFHMDHIGGLLYLTEQLKYKGDIYASSPTRAV 97
>gi|386359601|ref|YP_006057846.1| beta-lactamase fold exonuclease [Thermus thermophilus JL-18]
gi|383508628|gb|AFH38060.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus thermophilus JL-18]
Length = 431
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV SC + + +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSCHLLLAGSRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFSPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|432331211|ref|YP_007249354.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
gi|432137920|gb|AGB02847.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
Length = 636
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 13 RDVP-----VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
RD+P +R+ + LG EVGR+ +S +L DCG P +G Y
Sbjct: 170 RDLPARGDETARKDQWARVTTLGCCREVGRAAFLLSTPDSKVLIDCGEKPDNAGATPYIY 229
Query: 68 FDEIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
EI P S++D +++TH HLDH A +P L K + G V+ T T+ + +L DY+ V
Sbjct: 230 VPEIYPLSSLDAVVLTHAHLDHCALVP-LLYKYGYEGPVYSTPPTRDLSAMLQLDYLDV 287
>gi|119773637|ref|YP_926377.1| metallo-beta-lactamase family protein [Shewanella amazonensis SB2B]
gi|119766137|gb|ABL98707.1| metallo-beta-lactamase family protein [Shewanella amazonensis SB2B]
Length = 484
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL---PYFDEIDPSAIDVLL 80
+T+ GA EV SC + GK +L DCG+ A P+ DP+++D ++
Sbjct: 3 MTLTFWGATEEVTGSCHLLELNGKRLLLDCGLLQGGKQQEARNREPF--PFDPASLDAVV 60
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE--------- 131
++H H+DH+ LP L K FSG ++ AT + +LL D + E
Sbjct: 61 LSHAHIDHSGRLP-LLVKQGFSGPIYTHSATLDLCAILLKDAAMLQGRDTERQNKKRLKQ 119
Query: 132 -----DMLFDEQDINRSMDR 146
+ LFDEQD++ +M R
Sbjct: 120 GLEPLEALFDEQDVDIAMTR 139
>gi|223936291|ref|ZP_03628204.1| beta-lactamase domain protein [bacterium Ellin514]
gi|223895153|gb|EEF61601.1| beta-lactamase domain protein [bacterium Ellin514]
Length = 459
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ L +++G S ++ +G +L D G+HP G A+LP ++ +D +D + ITH
Sbjct: 1 MRIVNLNPDSDIGASAWFLELEGHRLLMDAGVHPKREGRASLPLYNLVDKEEVDAIAITH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
H DH SLP L + V MT + + + +L + V V ++M E
Sbjct: 61 CHHDHVGSLPVAL-RYFPKAHVLMTELSYFLVERVLHNSVNVMTRQRDEMGIKE 113
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP-SAIDVLLITHFH 85
LG EVGRSC + IL DCG++ S +++ PY E+ P A+D ++ITH H
Sbjct: 183 LGGSREVGRSCYLLQTPESRILIDCGVN--VSNLSSTPYLYVPEVQPLDALDAVVITHAH 240
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
LDH +P L K + G +++T T+ + LL D+++V+
Sbjct: 241 LDHCGLVP-LLYKFGYRGPIYLTPPTRDLMVLLQLDFLEVA 280
>gi|428307781|ref|YP_007144606.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249316|gb|AFZ15096.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 894
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
++ ++L + PLGA +G SC + I+ D G P G LP F+ + +P +
Sbjct: 305 KDKNRLIVTPLGAARSIGASCFRVLIGPYEIVLDAGTRP--KGSNPLPAFEHLKNP---N 359
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE-DMLFD 136
++LITH H DH +LP F ++ + + T T+ I ++LTD +KV + + + + LFD
Sbjct: 360 LILITHAHQDHIGALPVFHQRFPATP-MICTAGTREIAHVMLTDCLKVQQSNEDFEQLFD 418
Query: 137 EQDINRSMDRIE 148
E D+++++ +++
Sbjct: 419 EIDLDQTLFQLQ 430
>gi|386002906|ref|YP_005921205.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
gi|357210962|gb|AET65582.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
Length = 635
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP- 73
V+ + + I LG EVGRSC+ +S I+ DCG++ S +A PY E P
Sbjct: 174 VASKDQWVRITTLGGCREVGRSCMLLSTPESKIIVDCGVNVG-SDDSATPYLYVPEAYPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+ ID +++TH HLDHA +P L K + G ++ T T+ ++ LL DY+ ++ + M
Sbjct: 233 NQIDAVVLTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIDIAGREGKRM 291
Query: 134 LFDEQDINRSM 144
++ I ++
Sbjct: 292 PYESAMIREAL 302
>gi|448437483|ref|ZP_21587486.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
gi|445680702|gb|ELZ33144.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
Length = 497
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-IDVLL 80
+ + + LG EVGR+ +S IL DCG P G E +P A +D ++
Sbjct: 40 EWVRVTTLGCCREVGRASFILSTPESRILVDCGDKPGAEGEVPYLQIPEANPIADLDAVV 99
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+TH HLDH+A LP L K + G V+ T AT+ + LL DY+ V+
Sbjct: 100 LTHAHLDHSALLP-LLFKYGYDGPVYTTQATRDLMGLLQLDYLDVA 144
>gi|260655485|ref|ZP_05860973.1| metallo-beta-lactamase family protein [Jonquetella anthropi E3_33
E1]
gi|260629933|gb|EEX48127.1| metallo-beta-lactamase family protein [Jonquetella anthropi E3_33
E1]
Length = 629
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDV 78
G ++ + LGA EV SC + G +L D G+H + A +D + DP++ID
Sbjct: 5 GGKMRLKFLGATQEVTGSCYLIEVGGHRVLVDFGMHQGENEEAN---YDPLSFDPTSIDA 61
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK----------- 127
LL+TH H+DH+ +P L ++ F G+V+ T T + +LL D + K
Sbjct: 62 LLLTHAHIDHSGRIP-LLARSGFKGKVYCTLPTAELVELLWADSANLMKEDAAWRSRKNL 120
Query: 128 ---VSVEDMLFDEQDINRSM 144
+ + L+DE DI ++
Sbjct: 121 RKGLPAVEPLYDETDIGNAL 140
>gi|448406221|ref|ZP_21572743.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
gi|445678060|gb|ELZ30555.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
Length = 640
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 11 KRRDV----------PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
+RRD+ P + + + I LG EVGR+ +S +L DCG P
Sbjct: 159 ERRDILEDVGRQIHRPTTADNQWVRITTLGCCREVGRAAFLLSTPETRVLIDCGDKPGAE 218
Query: 61 GMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIY 115
G +PY + P +ID +++TH HLDH+A +P K + G ++ T T+ +
Sbjct: 219 G--EVPYLQAPEALAAGPDSIDAVVLTHAHLDHSALIPILF-KYGYDGPIYATEPTRDLM 275
Query: 116 KLLLTDYVKVS 126
LL DY+ V+
Sbjct: 276 GLLQLDYLDVA 286
>gi|406919983|gb|EKD58130.1| hypothetical protein ACD_57C00022G0009, partial [uncultured
bacterium]
Length = 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITHF 84
GA EV S + + GK IL DCGI + Y +P ID ++I H
Sbjct: 7 GACREVTGSNILVETAGKKILLDCGIFQGLKLSEERNFSPFAY----NPKEIDFVIIGHA 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDEQDI 140
HLDH LP + K F GR++ T TK + +L+L D K+++ E LF + DI
Sbjct: 63 HLDHTGKLPKLV-KEGFRGRIYATAPTKELTRLVLEDSAKLAREEAEKNNHPPLFTDDDI 121
Query: 141 NRSM 144
+ ++
Sbjct: 122 DNAI 125
>gi|357974067|ref|ZP_09138038.1| beta-lactamase-like protein [Sphingomonas sp. KC8]
Length = 452
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVL 79
LT+ LGA V S + + GK IL DCG+ + GM L + + P++I+ +
Sbjct: 2 LTMTSLGAAGTVTGSKHLLEHDGKRILIDCGL---FQGMKNLRELNWEPLPVPPASINAV 58
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
++TH HLDH+ LP + + F GR++ T AT+ + L+L D
Sbjct: 59 ILTHAHLDHSGYLPRLV-RDGFRGRIYATAATRDVAALILKD 99
>gi|325958080|ref|YP_004289546.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329512|gb|ADZ08574.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
AL-21]
Length = 634
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD-- 69
R++P E +LT LG EVGRS +++ I+ DCG++ A S ++ PY +
Sbjct: 170 RELPSENEWTRLT--SLGGFREVGRSSLFLQTSNSKIMLDCGVNVAGSDDKSSYPYLNVP 227
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E +D ++I+H HLDH+ LPY L + G V+ T T+ + LL D++ ++
Sbjct: 228 EFVLDDLDAVIISHAHLDHSGFLPY-LYHYGYEGPVYCTTPTRDLMTLLQLDHIDIAHRE 286
Query: 130 VEDMLFDEQDINRSM 144
+ F+ + + +S+
Sbjct: 287 DNPLPFNIKHVKKSI 301
>gi|435851175|ref|YP_007312761.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
gi|433661805|gb|AGB49231.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
Length = 636
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S ++ DCG++ + M Y E+ P S +D ++I
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESCVMIDCGVNVGSEEHMTPYLYVPEVSPFSKLDAVVI 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH LP L + F G V+ T T+ + LL DY+ V+
Sbjct: 241 THAHLDHQGLLP-LLYRYGFEGPVYCTPPTRDLMALLQLDYIDVA 284
>gi|325289911|ref|YP_004266092.1| RNA-metabolising metallo-beta-lactamase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965312|gb|ADY56091.1| RNA-metabolising metallo-beta-lactamase [Syntrophobotulus
glycolicus DSM 8271]
Length = 554
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
GA V SC + G IL DCG+ + L Y D DP +ID +++TH H+D
Sbjct: 6 FGASGTVTGSCYLVEASGFRILIDCGMFQGSKIIKELNYGDFPFDPLSIDAVILTHAHID 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+ +P + K+ ++G+V+ T ATKA +++L D + ++ +E
Sbjct: 66 HSGLIPKLI-KSGYNGKVYATPATKAFCEVMLPDSGHIQEMEIE 108
>gi|290559801|gb|EFD93125.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 629
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I LGA VGRS V + ++L D G+ + S +P D E D S ++ ++ITH
Sbjct: 178 ISALGAFRHVGRSAVLVQTPISSVLLDAGVDVSNS-REPVPRVDAPEFDISKLNAVVITH 236
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
HLDH LP L K + G V+ T T+ + LL DY+ ++ + +LFD DI
Sbjct: 237 SHLDHCGFLP-VLYKYGYKGPVYSTAPTRDVMTLLHLDYINLASKTNGKLLFDVDDI 292
>gi|70606450|ref|YP_255320.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449066664|ref|YP_007433746.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449068938|ref|YP_007436019.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
gi|68567098|gb|AAY80027.1| hypothetical metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035172|gb|AGE70598.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449037446|gb|AGE72871.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
Length = 631
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPY--FDEIDPSAIDVLLIT 82
I LG NEVGRS V + IL D G++P+ S G P D++ ID ++IT
Sbjct: 178 ITGLGGFNEVGRSAVLVETPESKILLDVGLNPSVSYGEKLFPRIDIDQVKLEDIDAVVIT 237
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +P L K + G V+MT T+ I L D + V++ + + +++ R
Sbjct: 238 HAHLDHCGMVP-LLFKYGYEGPVYMTPPTRDIMALAQLDALDVAEKEGRPIPYTAKEVRR 296
Query: 143 SM 144
+
Sbjct: 297 EL 298
>gi|397691837|ref|YP_006529091.1| RNA-metabolising metallo-beta-lactamase [Melioribacter roseus P3M]
gi|395813329|gb|AFN76078.1| RNA-metabolising metallo-beta-lactamase [Melioribacter roseus P3M]
Length = 465
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 9/108 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY-----FDEIDPSAIDVLLITH 83
+GA V S Y+ GK L DCG+ Y G L + F+ +P ID ++++H
Sbjct: 6 IGAAQTVTGSMHYVEACGKKFLIDCGL---YQGKRKLAFELNRTFEYFNPEEIDFVILSH 62
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+DH+ +LP ++K F+G++F T AT+ + ++L D + + VE
Sbjct: 63 AHIDHSGNLPTLVKK-GFNGKIFATFATRDLASIMLLDSAHIQEKDVE 109
>gi|46200035|ref|YP_005702.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
gi|46197663|gb|AAS82075.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
Length = 431
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|384430336|ref|YP_005639696.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
gi|333965804|gb|AEG32569.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
Length = 431
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|206890479|ref|YP_002249123.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742417|gb|ACI21474.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 459
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGI----HPAYSGMAALPYFDEIDPSAIDVLLITHF 84
GA V SC + + + IL +CG+ + P+ +P ID++++TH
Sbjct: 23 FGATKTVTGSCFLLEIEKQNILIECGLFQENDKEFLNYEPFPF----NPRKIDLVILTHA 78
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQDINRS 143
HLDH+A +P + K R+ T ATK + +++L D +KV K + + +L+DE++I ++
Sbjct: 79 HLDHSALIPKLV-KEGLRCRIITTPATKDLLEIMLFDALKVQKNENHKQLLYDEENIYKA 137
Query: 144 MDRIE 148
+ +IE
Sbjct: 138 LKQIE 142
>gi|91772428|ref|YP_565120.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91711443|gb|ABE51370.1| RNA-metabolizing metallo-beta-lactamase protein [Methanococcoides
burtonii DSM 6242]
Length = 636
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S I+ DCG++ M Y E+ P + ID ++I
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESKIMIDCGVNVGSDDNMTPYLYLPEVQPLNQIDAVVI 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K + G ++ T T+ I LL D++ V+
Sbjct: 241 THAHLDHQGLVP-LLYKYGYEGPIYCTSPTRDIMTLLQLDFIDVA 284
>gi|374633103|ref|ZP_09705470.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
gi|373524587|gb|EHP69464.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
Length = 639
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYF--DEIDPSAIDVLLIT 82
I LGA EVGRS V + +L D G++P+ SG P D++ +D +++T
Sbjct: 181 ITALGAFQEVGRSAVLVETPESRVLLDVGVNPSVNSGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K + G V+ T T+ I L+ D + +S+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYEGPVYATQPTRDIMALMQLDMLDISEKEGRPLPYSAKEVRK 299
Query: 143 SM 144
+
Sbjct: 300 EL 301
>gi|374315148|ref|YP_005061576.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sphaerochaeta pleomorpha str. Grapes]
gi|359350792|gb|AEV28566.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Sphaerochaeta pleomorpha str. Grapes]
Length = 559
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 10/112 (8%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY----SGMAALPYFDEIDPSAIDVL 79
+ I LGA +V SC + G IL DCG+ SGM LP+ +P +ID +
Sbjct: 1 MDITFLGAAQQVTGSCTLLESAGLKILVDCGLPQGNDERESGMD-LPF----NPESIDYV 55
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
L+TH H+DH+ +P L K F G++F T AT + +++L D + ++ E
Sbjct: 56 LLTHAHIDHSGRIP-LLVKNGFRGKIFTTPATIDLCEIMLADSGHIQEMEAE 106
>gi|257439905|ref|ZP_05615660.1| metallo-beta-lactamase family protein [Faecalibacterium prausnitzii
A2-165]
gi|257197633|gb|EEU95917.1| metallo-beta-lactamase domain protein [Faecalibacterium prausnitzii
A2-165]
Length = 535
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGA +EV SC + G+ L DCG+ P+ + P ID +L+TH H+DH
Sbjct: 6 LGANHEVTGSCTLLEAAGQRYLIDCGMEQGKDVYENQPF--PVAPGEIDGVLVTHAHIDH 63
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LP L + F GR++ T T + ++L D + + E
Sbjct: 64 TGQLP-LLVRNGFRGRIYATKPTTQLCSIMLRDSAHIQEFEAE 105
>gi|381189581|ref|ZP_09897107.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
gi|380452551|gb|EIA40149.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
Length = 431
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|288931295|ref|YP_003435355.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
gi|288893543|gb|ADC65080.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLD 87
LG EVGRSC + I+ DCG++ + Y E+ P +ID +++TH HLD
Sbjct: 185 LGGSREVGRSCYLLQTPESKIMIDCGVNVSNLNQTPYLYVPEVTPLDSIDAVVVTHAHLD 244
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
H +P L K + G +++T T+ + LL D++ V+
Sbjct: 245 HCGLIP-ILYKYGYKGPIYLTQPTRDLMVLLQLDFIDVA 282
>gi|297619493|ref|YP_003707598.1| beta-lactamase domain-containing protein [Methanococcus voltae A3]
gi|297378470|gb|ADI36625.1| beta-lactamase domain protein [Methanococcus voltae A3]
Length = 422
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV + K IL DCG+ P+ + A+P ++D S ID ++++H HLDH
Sbjct: 8 GGCHQIGKSCVEIETKKSRILVDCGMDPSNN---AIP---DVDASKIDAVVVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
++P+F K ++ T + + D V +SK + E+DI RSM I +
Sbjct: 62 GAVPHFDFKN-----IYCNAPTADLMYNVWKDTVNLSKS------YKEEDIQRSMKNINI 110
>gi|359415409|ref|ZP_09207872.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
gi|358034266|gb|EHK02708.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
Length = 623
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 21 GDQ-LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSA 75
GD+ + I LG +VGRSCV + + +L D GI+P PY + E+D
Sbjct: 169 GDEWIRISSLGGFRQVGRSCVLVQTEESNVLMDAGINPGAEPGSQDNFPYLNAPELDLRD 228
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H H+DH +PY L K + G ++ T T+ + +L DY+ ++ +
Sbjct: 229 LDAVVLSHAHMDHCGMIPY-LYKMGYDGPLYCTKPTRDMMIMLTLDYIGLAHSENNRAPY 287
Query: 136 DEQDINRSMDR 146
D I +++ R
Sbjct: 288 DSSAIKKAVKR 298
>gi|313680726|ref|YP_004058465.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
gi|313153441|gb|ADR37292.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
Length = 447
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLL 80
QLT GA V SC + ++G +L DCG+ Y G +D DP A+D ++
Sbjct: 2 QLTT--WGACGTVTGSCHLLEHQGFKLLLDCGM---YQGEPRSDNYDPFGFDPRAVDAVV 56
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK----------VSV 130
++H HLDH +P L + F GRV+ T T + + +L D +K+ K + V
Sbjct: 57 LSHAHLDHVGRIPR-LYRLGFEGRVYATAPTLKLIRPILEDALKLMKEDIKRARRKGLPV 115
Query: 131 EDMLFDEQDINRSMDR 146
++L+DE D++ + R
Sbjct: 116 PELLWDEADVHALLGR 131
>gi|150399442|ref|YP_001323209.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150012145|gb|ABR54597.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 421
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ + +LP +I S D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEVNTKKSKILLDCGMDPSDN---SLP---DIKDSEYDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++PYF K +V+ T + + D V +SK+ + E+DI ++MD I+
Sbjct: 62 GAIPYFNFK-----KVYCNPPTADLMYNVWKDTVNLSKI------YKEEDIKKTMDVIK 109
>gi|19881000|gb|AAM00627.1| unknown [Legionella pneumophila]
Length = 470
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPS 74
G ++ + LGA V S ++ K IL DCG+ Y A LP IDP
Sbjct: 14 NGGKMKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPH 69
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
ID ++ITH H+DH+ LP L K F G+++ T TKA+ +LL D
Sbjct: 70 DIDAVIITHAHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPD 115
>gi|410672076|ref|YP_006924447.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409171204|gb|AFV25079.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 636
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ I LG EVGRSC +S I+ DCG++ A M Y E P + ID +++
Sbjct: 181 VRITSLGGAKEVGRSCFIISTPESRIMVDCGVNVASDDNMTPYLYVPEAFPINQIDAVVL 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K F G V+ T T+ + LL DY+ V+
Sbjct: 241 THAHLDHQGLVP-LLYKYGFEGPVYCTPPTRDLMALLQLDYIDVA 284
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD-- 69
R++P E +LT LG EVGRS +++ IL DCG++ A + ++ PY +
Sbjct: 170 REMPSENEWTRLT--SLGGFREVGRSSLFLQTTNSKILLDCGVNVAGTDDKSSYPYLNVP 227
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E +D ++I+H HLDH+ LPY L + G V+ T T+ + LL D++ ++
Sbjct: 228 EFVLDDLDAVVISHAHLDHSGFLPY-LYHYGYEGPVYCTTPTRDLMTLLQLDHIDIAHRE 286
Query: 130 VEDMLFDEQDINRSM 144
+ + F+ + + +S+
Sbjct: 287 DKPLPFNIKHVKKSI 301
>gi|54298302|ref|YP_124671.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
gi|53752087|emb|CAH13513.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
Length = 470
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPS 74
G ++ + LGA V S ++ K IL DCG+ Y A LP IDP
Sbjct: 14 NGGKMKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPH 69
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
ID ++ITH H+DH+ LP L K F G+++ T TKA+ +LL D
Sbjct: 70 DIDAVIITHAHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPD 115
>gi|389860541|ref|YP_006362780.1| beta-lactamase [Thermogladius cellulolyticus 1633]
gi|388525444|gb|AFK50642.1| beta-lactamase domain protein [Thermogladius cellulolyticus 1633]
Length = 653
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAI-----DV 78
+ LG EVGRS + + K +L D GI+ + + A P EID AI D
Sbjct: 190 VTALGGFMEVGRSAILVETKESRVLLDLGINVGAIHDPLKAYP---EIDLDAIRVDELDA 246
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K + G +MT T+ + +++ D ++V++ D+ F E+
Sbjct: 247 VIVTHSHLDHVGVVP-LLYKYGYRGPTYMTKPTRELSAIMIQDLIQVARREGRDIPFGEK 305
Query: 139 DIN 141
D++
Sbjct: 306 DLS 308
>gi|242398880|ref|YP_002994304.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
gi|242265273|gb|ACS89955.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
Length = 648
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ D + I LG EVGRS + + +L D G++ A LP+F+ +
Sbjct: 182 KSDWIRITALGGFREVGRSALLLQTNESFVLVDFGVNVAELNDPKKGLPHFEAPEFTYVL 241
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+D +++TH HLDH+ LPY F G ++ T T+ + LL D++++ + +
Sbjct: 242 KERLLDAIIVTHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMILLQKDFIEIQQSNGV 301
Query: 132 DMLFDEQDI 140
+ L+ +DI
Sbjct: 302 EPLYRMKDI 310
>gi|298247547|ref|ZP_06971352.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
gi|297550206|gb|EFH84072.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
Length = 776
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFDEIDPSAIDVLLITHFHLD 87
LG +EVG SC + G+ +L D G+ PA G + LP +D + L+ITH H+D
Sbjct: 6 LGGASEVGASCTLLQVVGRKLLVDGGMRPAAREGQSRLPDLSLLDKQPPEALIITHAHID 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-----KVSVEDMLFDEQDINR 142
H +LP + ++ T +T+ + ++LL D V++ + E L++ + ++
Sbjct: 66 HTGALP-LIASLLPHIPIYATESTRVLTEVLLRDSVRIMEQEHLRPDGETPLYNAEQVDA 124
Query: 143 SMDRIEV 149
+ RI+V
Sbjct: 125 FLGRIQV 131
>gi|197302590|ref|ZP_03167645.1| hypothetical protein RUMLAC_01319 [Ruminococcus lactaris ATCC
29176]
gi|197298488|gb|EDY33033.1| metallo-beta-lactamase domain protein [Ruminococcus lactaris ATCC
29176]
Length = 534
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC ++ GK IL DCG+ P LP I + +D + +TH H+
Sbjct: 6 VGAAHEVTGSCHFLQTAGKNILIDCGMEQGPDLYENPGLP----IPANEVDYVFLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP L K F G++F T+AT + ++L D + + E
Sbjct: 62 DHSGMLPR-LAKDGFKGQIFTTYATADLCNIMLRDSAHIQEFEAE 105
>gi|255311938|pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311939|pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311940|pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311941|pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|320352973|ref|YP_004194312.1| RNA-metabolising metallo-beta-lactamase [Desulfobulbus propionicus
DSM 2032]
gi|320121475|gb|ADW17021.1| RNA-metabolising metallo-beta-lactamase [Desulfobulbus propionicus
DSM 2032]
Length = 462
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GA V SC + + K IL DCG++ M D DP++ID LL+TH HLDH
Sbjct: 7 GAARNVTGSCHLVECRDKRILIDCGLYQGNREMDEENSNDFGFDPASIDYLLLTHGHLDH 66
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+P L + F G V T AT+ + +L++ D ++ +
Sbjct: 67 CGRIP-LLHRLGFRGTVLTTAATRELARLVMLDSARIQE 104
>gi|55980221|ref|YP_143518.1| metallo-beta-lactamase [Thermus thermophilus HB8]
gi|81600562|sp|Q5SLP1.1|RNSE_THET8 RecName: Full=Ribonuclease TTHA0252
gi|301598475|pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598476|pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598477|pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598478|pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598479|pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598480|pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598481|pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598482|pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598483|pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598484|pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598485|pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598486|pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|55771634|dbj|BAD70075.1| metallo-beta-lactamase superfamily protein [Thermus thermophilus
HB8]
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|255311946|pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311947|pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311948|pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311949|pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|118443365|ref|YP_878383.1| metallo-beta-lactamase family protein [Clostridium novyi NT]
gi|118133821|gb|ABK60865.1| metallo-beta-lactamase family protein, putative [Clostridium novyi
NT]
Length = 512
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPA----YSGMAALPYFDEIDPSAIDVLLITHFH 85
GA V SC M + KTIL DCG+ G P+ DP ID ++++H H
Sbjct: 7 GAAKCVTGSCHIMKFNDKTILLDCGLFQGKDEKVRGNDEFPF----DPKKIDYVILSHAH 62
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+DH+ +P L K F G V T ATK + ++L D + + E + + I + +D
Sbjct: 63 IDHSGRIP-LLYKKGFKGEVICTRATKQLCSIMLPDSGYIQETETE--WKNRKRIRQGLD 119
Query: 146 RIE 148
IE
Sbjct: 120 TIE 122
>gi|255311954|pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311955|pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311956|pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311957|pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|153814533|ref|ZP_01967201.1| hypothetical protein RUMTOR_00747 [Ruminococcus torques ATCC 27756]
gi|145848027|gb|EDK24945.1| metallo-beta-lactamase domain protein [Ruminococcus torques ATCC
27756]
Length = 534
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC ++ GK IL DCG+ P LP I + ID + +TH H+
Sbjct: 6 VGAAHEVTGSCHFLQAAGKNILIDCGMEQGPDLYENPGLP----IPENEIDYVFLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP L K F G++F T AT + ++L D + + E
Sbjct: 62 DHSGMLPK-LAKNGFKGQIFTTFATADLCNIMLRDSAHIQEFEAE 105
>gi|448377860|ref|ZP_21560556.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
gi|445655804|gb|ELZ08649.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
Length = 645
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRDV + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDV-LERVGRQIHREEMSDDEYVRITTLGCSREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + P ID +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLHAPEALGAGPQTIDAVVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|317500576|ref|ZP_07958797.1| metallo-beta-lactamase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089323|ref|ZP_08338224.1| hypothetical protein HMPREF1025_01807 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438720|ref|ZP_08618345.1| hypothetical protein HMPREF0990_00739 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898009|gb|EFV20059.1| metallo-beta-lactamase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330405504|gb|EGG85036.1| hypothetical protein HMPREF1025_01807 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336018313|gb|EGN48064.1| hypothetical protein HMPREF0990_00739 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 534
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC ++ GK IL DCG+ P LP I + ID + +TH H+
Sbjct: 6 VGAAHEVTGSCHFLQAAGKNILIDCGMEQGPDLYENPGLP----IPENEIDYVFLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP L K F G++F T AT + ++L D + + E
Sbjct: 62 DHSGMLPK-LAKNGFKGQIFTTFATADLCNIMLRDSAHIQEFEAE 105
>gi|255311942|pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311943|pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311944|pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311945|pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>gi|261402359|ref|YP_003246583.1| beta-lactamase [Methanocaldococcus vulcanius M7]
gi|261369352|gb|ACX72101.1| beta-lactamase domain protein [Methanocaldococcus vulcanius M7]
Length = 428
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ II GA EVGRSC+ + IL DCG+ P D ID + ++H
Sbjct: 1 MEIIFRGAALEVGRSCIEVKTDKSKILLDCGVKLGKD--IEYPLLDN-SIKDIDKVFVSH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ SLP K + T TK + K+LL D +++S+ + ++ DI +
Sbjct: 58 AHLDHSGSLPILFSK-RIDVPIITTELTKKLVKVLLKDMIRISETENRKIPYNYHDIKET 116
Query: 144 M 144
M
Sbjct: 117 M 117
>gi|433638879|ref|YP_007284639.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
gi|433290683|gb|AGB16506.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
Length = 645
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRDV + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDV-LERVGRQIHREEMSDDEYVRITTLGCSREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + P ID +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLHAPEALGAGPQTIDAVVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|284161558|ref|YP_003400181.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
gi|284011555|gb|ADB57508.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
Length = 631
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLD 87
LG EVGRSC + IL +CGI+ + + L Y EI P +ID ++ITH HLD
Sbjct: 183 LGGAREVGRSCYLLQTPNSKILVECGINVSGNQPPYL-YIPEIQPLDSIDAVVITHAHLD 241
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
H +P K + G V++T T+ + LL D+++V+
Sbjct: 242 HCGLVPVLF-KYGYRGPVYLTPPTRDLMVLLQLDFIEVA 279
>gi|374628280|ref|ZP_09700665.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
gi|373906393|gb|EHQ34497.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
Length = 630
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SA 75
++ + L + LG EVGR+ MS IL DCG P + Y EI P ++
Sbjct: 172 ITSKDKWLRVTTLGCCREVGRAAFLMSTPESKILIDCGEKPGNNDGYPYLYVPEIYPLNS 231
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH HLDH A +P L K + G V+ T AT+ + +L DY+ V + +
Sbjct: 232 LDAVVITHAHLDHCALVP-LLYKYGYEGPVYSTPATRDLSVMLQLDYLDVVANETSKVPY 290
Query: 136 DEQDINR 142
+++ +
Sbjct: 291 SSKEVQQ 297
>gi|146296048|ref|YP_001179819.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409624|gb|ABP66628.1| beta-lactamase domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 821
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + GK IL D GI + L E+ DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILLDSGIRMKEDKLPNLQLLREL--GGADVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTH-ATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDIN 141
HLDH SLP + + F T+ TK + K+LL D +K+ +++ ++ E+++
Sbjct: 59 AHLDHIGSLPLIARE--YPHIFFYTNQPTKDLIKVLLYDSLKIMDAKEDEIPIYAEKNVE 116
Query: 142 RSMDR 146
+DR
Sbjct: 117 DLLDR 121
>gi|14600511|ref|NP_147027.1| exonuclease [Aeropyrum pernix K1]
gi|5103572|dbj|BAA79093.1| putative exonuclease [Aeropyrum pernix K1]
Length = 420
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG+G EVGR+ + + G+ +L D G++ + P ++ P +D L++TH HLDH
Sbjct: 7 LGSGREVGRAAILVESGGRGLLLDYGVNFDENDRPVFP--GDVRPRDLDGLVLTHSHLDH 64
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDML 134
+ PY + +VF T T + +LLL D +K++ SVEDML
Sbjct: 65 IGAAPYLY--VSQGPKVFGTRVTLHVSRLLLYDMIKLNGAYLPYDERSVEDML 115
>gi|448726634|ref|ZP_21709028.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
gi|445793964|gb|EMA44528.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
Length = 636
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP-SAI 76
+G+ + I LG EVGR+ +S IL DCG P G PY E +P ++I
Sbjct: 178 DGEWVRITTLGCCREVGRASFILSTPETRILIDCGDKP---GSDDAPYLQVPEANPLNSI 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
D +++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 235 DAVVLTHAHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMGLLQLDYLDVA 283
>gi|256810384|ref|YP_003127753.1| beta-lactamase [Methanocaldococcus fervens AG86]
gi|256793584|gb|ACV24253.1| beta-lactamase domain protein [Methanocaldococcus fervens AG86]
Length = 428
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ II GA EVGRSC+ + IL DCG+ P DE +D + ++H
Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDE-SIRDVDKVFVSH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP K + T +K + K+LL D VK+++ + + ++ D+ +
Sbjct: 58 AHLDHSGALPILFHK-RIDVPIITTELSKKLIKILLKDMVKIAETESKKIPYNGHDVKET 116
Query: 144 M 144
M
Sbjct: 117 M 117
>gi|407783412|ref|ZP_11130613.1| Beta-lactamase domain protein [Oceanibaculum indicum P24]
gi|407202137|gb|EKE72132.1| Beta-lactamase domain protein [Oceanibaculum indicum P24]
Length = 537
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
+T+ GA V SC + GKT+L DCG+ + L Y DP +D +++T
Sbjct: 3 ITLTFHGAAGTVTGSCYRLEADGKTLLIDCGMFQGDKTLKQLNYEPWPFDPRGVDAVVMT 62
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H H+DH+ +P L K + G V T T + + +L D + ++ VE +
Sbjct: 63 HAHIDHSGLIPR-LTKAGYKGPVIATEGTAELLRFMLPDSGSIQEMEVERLNRRNQRRGL 121
Query: 134 -----LFDEQDINRSMDRIE 148
++ +QD +++++E
Sbjct: 122 PSLRPIYTQQDAQDALEQLE 141
>gi|225850137|ref|YP_002730371.1| metallo-beta-lactamase family protein [Persephonella marina EX-H1]
gi|225645326|gb|ACO03512.1| metallo-beta-lactamase family protein [Persephonella marina EX-H1]
Length = 468
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVL 79
+++T+ GA V SC ++ IL DCG+ + G+ +D DP ID L
Sbjct: 3 EKITVQSFGAAKTVTGSCHLITAGKLKILVDCGL---FQGIDEERNYDPFLFDPKDIDYL 59
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---------- 129
++TH HLDH +P L K F G++ T T+ I +++L D KV +
Sbjct: 60 IVTHAHLDHIGRIP-LLVKNGFRGKIISTKPTRIISRIMLLDAAKVMEEEYRVEYRKALR 118
Query: 130 ------VEDMLFDEQDINRSMDRIEV 149
V+ LFDE D+ +M+ +
Sbjct: 119 RGEPEKVKPPLFDEDDVYEAMEHFRI 144
>gi|120405075|ref|YP_954904.1| beta-lactamase domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119957893|gb|ABM14898.1| beta-lactamase domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 457
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLI 81
+LT LG + V S + G IL DCG+ + L + +DPS+ID +++
Sbjct: 5 ELTFRSLGGASTVTGSKHLLESDGTRILVDCGLFQGVKNLRELNWAPLAVDPSSIDAVVV 64
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-------- 133
TH HLDH LP + + F G + T AT A+ ++L D K+ + E +
Sbjct: 65 THAHLDHTGYLPRLV-RDGFRGPIVSTEATAAVADIILRDSAKLQERDAEFLNRHKATKH 123
Query: 134 -----LFDEQDINRSMD 145
L+D D R+++
Sbjct: 124 HPALPLYDSDDAQRALE 140
>gi|429735291|ref|ZP_19269260.1| metallo-beta-lactamase domain protein [Selenomonas sp. oral taxon
138 str. F0429]
gi|429159403|gb|EKY01918.1| metallo-beta-lactamase domain protein [Selenomonas sp. oral taxon
138 str. F0429]
Length = 550
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 13 RDVPVSREGDQLTIIP-LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-E 70
RD V +EG L + LGA + V SC + + L DCG++ + + Y D
Sbjct: 3 RDTTVYQEGGYLMRLEFLGAAHVVTGSCYLLHVGDHSYLVDCGMYQGTRRLREMNYEDFP 62
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
+P+ ID + +TH H+DH +P + + F G+++ T +T + +++L D + +
Sbjct: 63 FNPAEIDAVFLTHAHIDHCGRIPRLV-REGFRGKIYATRSTCDLVRIMLPDSAHIQESDA 121
Query: 131 EDMLFDEQDINRS 143
E LF+ ++ RS
Sbjct: 122 E--LFNRKNARRS 132
>gi|255513971|gb|EET90235.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 453
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
GA EVGRSC+ +S IL D G ++ +P + +ID +++TH HL
Sbjct: 28 GAAEEVGRSCLMVSTGNANILLDAGLGNVNEQEGSEMRMPEITDETLGSIDAIVVTHAHL 87
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
DH + + + FSG+V+ T T + KL + DYV++SK
Sbjct: 88 DHCCFVAHAYARG-FSGKVYATKPTVELMKLQVADYVRISK 127
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
+D ++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ + E
Sbjct: 130 LDCVIISHFHLDHCGALPYMTEIVGYDGPIYMTHPTKAICPILLDDYRKITVERRGEQNF 189
Query: 135 FDEQDINRSMDRIEVCFL 152
F + I R M +++ ++
Sbjct: 190 FTSEMIYRCMSKVKCVYV 207
>gi|145507230|ref|XP_001439570.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406765|emb|CAK72173.1| unnamed protein product [Paramecium tetraurelia]
Length = 484
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA----IDVLLITHFHLDHAASLPYFLE--KTTFSG 103
+ DCG+H + P F I+ +D++LITHFHLDH +LPYF E ++G
Sbjct: 1 MLDCGLHMTHQDNRRFPDFSLIEEKLGRKYVDLVLITHFHLDHCGALPYFTELYGNGYNG 60
Query: 104 RVFMTHATKAIYKLLLTDYVKVSKVSVED 132
V M+ TKA+ +L DY ++ + ED
Sbjct: 61 PVVMSMPTKALLPYMLEDYRRIWTMPKED 89
>gi|417926423|ref|ZP_12569822.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
gi|341589273|gb|EGS32555.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
Length = 539
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY--FDEIDPSAIDVLLI 81
+ I LGA EV SC + + + DCG+ + G L DEID S ++ +L+
Sbjct: 1 MKITFLGAAQEVTGSCYVVETEKHKFMVDCGL---FQGSKELEQKNHDEIDFSDVEFMLL 57
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH +P L K F ++ T ATK + +++L D K+ + VE
Sbjct: 58 THAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE 106
>gi|169824737|ref|YP_001692348.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
gi|167831542|dbj|BAG08458.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
Length = 539
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY--FDEIDPSAIDVLLI 81
+ I LGA EV SC + + + DCG+ + G L DEID S ++ +L+
Sbjct: 1 MKITFLGAAQEVTGSCYVVETEKHKFMVDCGL---FQGSKELEQKNHDEIDFSDVEFMLL 57
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH +P L K F ++ T ATK + +++L D K+ + VE
Sbjct: 58 THAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE 106
>gi|304310918|ref|YP_003810516.1| Metallo-beta-lactamase superfamily protein [gamma proteobacterium
HdN1]
gi|301796651|emb|CBL44863.1| Metallo-beta-lactamase superfamily protein [gamma proteobacterium
HdN1]
Length = 473
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE---IDPSAIDVLLITHFHL 86
GA EV SC + + IL +CG+H G AA DE DP +ID ++++H H+
Sbjct: 8 GAAKEVTGSCYLLETRHSRILMECGMHQG--GNAAERRNDEPFPFDPRSIDAVVLSHAHM 65
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ LP + K F G ++ T AT+ + ++L D + L D ++ NR + R
Sbjct: 66 DHSGLLPKLV-KEGFHGPIYATDATRRLLAIMLRDGANL-------YLRDLENHNRRLQR 117
>gi|302380226|ref|ZP_07268698.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|303235047|ref|ZP_07321671.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
gi|302312009|gb|EFK94018.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|302493902|gb|EFL53684.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
Length = 539
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY--FDEIDPSAIDVLLI 81
+ I LGA EV SC + + + DCG+ + G L DEID S ++ +L+
Sbjct: 1 MKITFLGAAQEVTGSCYIVETEKHKFMVDCGL---FQGSKELEQKNHDEIDFSDVEFMLL 57
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH +P L K F ++ T ATK + +++L D K+ + VE
Sbjct: 58 THAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE 106
>gi|388455603|ref|ZP_10137898.1| metallo-beta lactamase [Fluoribacter dumoffii Tex-KL]
Length = 453
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A+LP IDP ID ++ITH
Sbjct: 6 LGATQTVTGSKYLLTIDSKKILIDCGLFQGYKELRLRNWASLP----IDPRDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLP-LLVKNEFQGKIYATPGTKALCAILLPD 98
>gi|388258553|ref|ZP_10135728.1| metallo-beta-lactamase superfamily protein [Cellvibrio sp. BR]
gi|387937312|gb|EIK43868.1| metallo-beta-lactamase superfamily protein [Cellvibrio sp. BR]
Length = 467
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+I LGA EV SC + GK L DCGI G + DP+AID ++++H H
Sbjct: 9 LIFLGAAQEVTGSCHLLETAGKRYLLDCGI---LQGEGSEEQAFSFDPAAIDAVILSHVH 65
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
LDH+ LP + + F G ++ T T + +LL D
Sbjct: 66 LDHSGRLPRLV-RGGFRGSIYCTEGTARLLPILLKD 100
>gi|255020925|ref|ZP_05292981.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus ATCC 51756]
gi|340781543|ref|YP_004748150.1| metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus SM-1]
gi|254969716|gb|EET27222.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus ATCC 51756]
gi|340555696|gb|AEK57450.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus SM-1]
Length = 460
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC + +GK +L DCG+ + G L + DP +ID+LL+TH H
Sbjct: 7 GADRNVTGSCHLLEARGKRVLIDCGM---FQGGRELDEENADDFGFDPRSIDLLLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
LDH +P L K F G + T AT+ + +++L D + + ED ++ NR
Sbjct: 64 LDHCGRIP-LLAKRGFRGEIITTAATRELTRVVLLDSAHLQE---EDAERRQRHANR 116
>gi|398809311|ref|ZP_10568161.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Variovorax sp. CF313]
gi|398085786|gb|EJL76428.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Variovorax sp. CF313]
Length = 450
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVLLITHF 84
LG V S ++++G+ +L DCG+ + G+ L + +D +AID +L+TH
Sbjct: 6 LGGTGTVTGSKYLLTHEGRRLLVDCGL---FQGLKQLRLRNWEALPVDAAAIDAVLLTHA 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------------SKVSVE 131
H+DH+ +P ++ F GRV+ T AT+ + +LLL D ++ SK
Sbjct: 63 HMDHSGFVPRLVQ-LGFKGRVYCTSATRELCELLLPDSGRLQEEDADFANRHGHSKHKPA 121
Query: 132 DMLFDEQDINRSMDRIEV 149
L+ EQD ++ R EV
Sbjct: 122 LPLYTEQDARAALKRFEV 139
>gi|292490277|ref|YP_003525716.1| beta-lactamase [Nitrosococcus halophilus Nc4]
gi|291578872|gb|ADE13329.1| beta-lactamase domain protein [Nitrosococcus halophilus Nc4]
Length = 482
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI---HPAYSGMAALPYFDEIDP 73
+SRE L I LGA EV SC + K IL DCG+ P P+ DP
Sbjct: 1 MSREQRTLQIQFLGAAGEVTGSCHLVQVGEKKILLDCGLIQGRPKDEARNREPF--PFDP 58
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
ID ++++H H+DH+ LP L K+ +SG V+ AT + + +L D
Sbjct: 59 ETIDAVVLSHAHIDHSGRLP-LLIKSGYSGPVYTHRATADLCRTMLRD 105
>gi|119357569|ref|YP_912213.1| beta-lactamase domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354918|gb|ABL65789.1| beta-lactamase domain protein [Chlorobium phaeobacteroides DSM 266]
Length = 465
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 24/137 (17%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITHF 84
GA V SC + K TIL DCG+ S AA P+ DP++IDV++++H
Sbjct: 7 GATERVTGSCHIIRTKQATILLDCGLIQGSSDEEQLNRAAFPF----DPASIDVVVLSHG 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
H+DH+ LP +++ FSG ++ AT + ++LL D +++ E
Sbjct: 63 HIDHSGRLPLLVQR-GFSGSIYTHEATLDLCRVLLLDSASLAERDAEYQRKHPVTRQDKH 121
Query: 132 -DMLFDEQDINRSMDRI 147
+ L+ +++ R++DR+
Sbjct: 122 AEPLYTRKEVLRTLDRM 138
>gi|2129074|pir||G64305 hypothetical protein YLR277c homolog - Methanococcus jannaschii
Length = 435
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+++ G + II GA EVGRSC+ + IL DCG+ P D +
Sbjct: 1 MNKNGGIMEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDV 57
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D + I+H HLDH+ +LP + V T +K + K+LL D VK+++ + + ++
Sbjct: 58 DKVFISHAHLDHSGALPVLFHR-KMDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYN 116
Query: 137 EQDINRSM 144
D+ ++
Sbjct: 117 NHDVKEAI 124
>gi|448655418|ref|ZP_21682228.1| metal-dependent RNase [Haloarcula californiae ATCC 33799]
gi|445764618|gb|EMA15764.1| metal-dependent RNase [Haloarcula californiae ATCC 33799]
Length = 600
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ + P G G EVGRSC + + T L DCG+ + G P + P +D + +TH
Sbjct: 32 IAVTPRGGGREVGRSCYQLDTQYGTYLIDCGL--SQGGGDKFPDLRGLSPDDVDSVFLTH 89
Query: 84 FHLDHAASLPYFLEKTTF--SGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
H+DH+ LP + ++F T T I + LL D +K+ D F E
Sbjct: 90 AHIDHSGGLPVLENRGLLDDDAKIFATEPTIQIAQTLLQDSLKLHLRETTDGPAEQQFTE 149
Query: 138 QDINRSMDR 146
D+ R
Sbjct: 150 ADVESVFRR 158
>gi|291550015|emb|CBL26277.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Ruminococcus torques L2-14]
Length = 534
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC ++ GK +L DCG+ P LP I + +D + +TH H+
Sbjct: 6 VGAAHEVTGSCHFLQVAGKNVLVDCGMEQGPDLYENPGLP----ISATEVDYVFLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP L K F G++F T+AT + ++L D + + E
Sbjct: 62 DHSGMLPK-LAKDGFKGQIFTTYATADLCGIMLRDSAHIQEFEAE 105
>gi|424845294|ref|ZP_18269905.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Jonquetella anthropi DSM 22815]
gi|363986732|gb|EHM13562.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Jonquetella anthropi DSM 22815]
Length = 620
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 20/132 (15%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITHFHL 86
LGA EV SC + G +L D G+H + A +D + DP++ID LL+TH H+
Sbjct: 6 LGATQEVTGSCYLIEVGGHRVLVDFGMHQGENEEAN---YDPLSFDPTSIDALLLTHAHI 62
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK--------------VSVED 132
DH+ +P L ++ F G+V+ T T + +LL D + K + +
Sbjct: 63 DHSGRIP-LLVRSGFKGKVYCTLPTAELVELLWADSANLMKEDAAWRSRKNLRKGLPAVE 121
Query: 133 MLFDEQDINRSM 144
L+D+ DI+ ++
Sbjct: 122 PLYDQTDIDNAL 133
>gi|397665132|ref|YP_006506670.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395128543|emb|CCD06759.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A+LP IDP ID ++ITH
Sbjct: 6 LGATQTVTGSKYLLTIDSKKILIDCGLFQGYKELRLRNWASLP----IDPRDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLP-LLVKNGFQGKIYATPGTKALCAILLPD 98
>gi|312127068|ref|YP_003991942.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777087|gb|ADQ06573.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
Length = 822
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + K IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
HLDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLP-LIAREYPQIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVED 117
Query: 143 SMDR 146
+DR
Sbjct: 118 LLDR 121
>gi|288574417|ref|ZP_06392774.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570158|gb|EFC91715.1| beta-lactamase domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 533
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGA EV S + G IL DCG+H + DP ++DV+L+TH H+DH
Sbjct: 6 LGAAEEVTGSSYMLEVAGHRILIDCGLHQGRNEDERNREPFHFDPLSLDVVLLTHAHIDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE--------------DML 134
+P L K FSG+V T T + ++L D ++ K E + L
Sbjct: 66 TGRVP-LLVKQGFSGKVMSTLPTVELTEVLWRDSARLMKEEAEWKTKKNARKGLPAVEPL 124
Query: 135 FDEQDINRSMD 145
F+++D++ +++
Sbjct: 125 FEDEDVSEALN 135
>gi|154150928|ref|YP_001404546.1| beta-lactamase domain-containing protein [Methanoregula boonei 6A8]
gi|153999480|gb|ABS55903.1| beta-lactamase domain protein [Methanoregula boonei 6A8]
Length = 639
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+D P R+ + + LG EVGR+ ++ +L DCG P +G Y EI
Sbjct: 180 KDAP--RKDQWVRVTTLGCCREVGRAAFLLTTPDSRVLIDCGEKPDNAGGTPYLYVPEIH 237
Query: 73 PSA-IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
P A +D +++TH HLDH A +P L K + G V+ T T+ + +L DY+ V
Sbjct: 238 PLAQLDAVVLTHAHLDHCALIP-LLYKYGYEGPVYSTPPTRDLSAMLQLDYLDV 290
>gi|399024279|ref|ZP_10726323.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
gi|398080819|gb|EJL71614.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
Length = 455
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAID 77
+ + I LG V S + TIL DCG+ + G+ AL + ID + ID
Sbjct: 2 NTMIIKSLGGAGTVTGSKHLLKTSELTILIDCGL---FQGVKALREQNWESLSIDLAEID 58
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
++++TH HLDH +P L K F G+V+MT TK + KL+L D K+ + E
Sbjct: 59 IVILTHAHLDHCGYIP-LLVKNGFKGKVYMTEPTKELAKLILLDSAKLQEEDAE 111
>gi|193084111|gb|ACF09778.1| beta-lactamase domain protein [uncultured marine crenarchaeote
KM3-153-F8]
Length = 422
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I LGA EVGRS + + K I+ D GI + P + +P +D ++++H
Sbjct: 1 MNITTLGASREVGRSAFLVEIEDKKIILDFGIMVKRPTL--FPLY--TNPKEVDAVILSH 56
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQDINR 142
HLDH+ ++P F V+ T A+ I KLL+ D++ +S V+ + + F ++ +
Sbjct: 57 AHLDHSGAIPSFFVSNNID--VYCTSASADISKLLIDDFINLSNDVTKQYIPFQHLELKK 114
Query: 143 SMDRIEVCFLS 153
MD I+ L+
Sbjct: 115 MMDNIKRVELN 125
>gi|301058011|ref|ZP_07199066.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
gi|300447837|gb|EFK11547.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
Length = 432
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG V SC + G IL DCG+ + + + + P+ +D L +TH
Sbjct: 1 MKIVHLGGEKTVTGSCHLLQVNGLNILVDCGLAQGRDHLLPMDCW-PVKPADVDFLFLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
H+DH +P ++K F G + THATKA+ + +L D S ++
Sbjct: 60 AHIDHVGRVPELVQK-GFRGEILTTHATKALLEPMLKDAAGFSHLT 104
>gi|448630398|ref|ZP_21673053.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445756321|gb|EMA07696.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 638
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDV 78
+ I LGA EVGRS +S IL DCG P +G PY D + ID
Sbjct: 182 VRITTLGACREVGRSAFILSTPDTRILIDCGNKPGANGEQ--PYLDIPEAFGAGTNGIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P E + G ++ T T+ + LL DY+ +
Sbjct: 240 VVLTHAHLDHSALVPLLFE-YGYDGPIYCTEPTRDLMGLLTLDYLDTA 286
>gi|167043166|gb|ABZ07875.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW141J13]
Length = 643
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVL 79
+++++ LG +VGRSC+ ++ +L DCGI+P A P D I +D +
Sbjct: 185 EVSLLTLGGFGQVGRSCMLLTTPDSKVLVDCGINPGTRIPRDAYPRLDWANITLDDLDAV 244
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP L K + G ++ T T + L+ D +KVS ++ ++D
Sbjct: 245 VIGHAHLDHTGFLPVLL-KYGYKGPIYCTEPTLPMMNLIQLDAIKVSVAQGRTPMYADRD 303
Query: 140 INRSM 144
+ + M
Sbjct: 304 VFQVM 308
>gi|194333560|ref|YP_002015420.1| beta-lactamase domain-containing protein [Prosthecochloris
aestuarii DSM 271]
gi|194311378|gb|ACF45773.1| beta-lactamase domain protein [Prosthecochloris aestuarii DSM 271]
Length = 465
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL---PYFDEIDPSAIDVLLITHFHL 86
GA + SC + G TIL DCG+ + AL P+ DP AID +++TH H+
Sbjct: 7 GATGRITGSCHILRSSGYTILVDCGLIQGSAEEEALNREPF--PFDPRAIDAVVLTHGHI 64
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF-DEQDINRSMD 145
DH+ LP L K F G VF AT+ + +LL D ++ + +D + + Q + +D
Sbjct: 65 DHSGRLP-LLVKEGFRGPVFTQQATRDLSLVLLQDSARLGE---QDARYKNRQRAKKKLD 120
Query: 146 RIEVCF 151
IE +
Sbjct: 121 PIEPLY 126
>gi|336477059|ref|YP_004616200.1| KH-domain/beta-lactamase-domain-containing protein [Methanosalsum
zhilinae DSM 4017]
gi|335930440|gb|AEH60981.1| KH-domain/beta-lactamase-domain protein [Methanosalsum zhilinae DSM
4017]
Length = 636
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVL 79
+ + I LG EVGRSC +S ++ DCG++ M Y E P + +D +
Sbjct: 179 EWVRITSLGGCREVGRSCFVLSTPESRVMVDCGVNVGSDENMTPYLYVPEAYPLNQLDAV 238
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+ITH HLDH +P L K + G ++ T T+ + LL DY+ V+ + ++ D
Sbjct: 239 VITHAHLDHQGLVP-LLYKYGYEGPIYCTPPTRDLMALLQLDYIDVAARDARKIPYESAD 297
Query: 140 I 140
I
Sbjct: 298 I 298
>gi|381150272|ref|ZP_09862141.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Methylomicrobium album BG8]
gi|380882244|gb|EIC28121.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Methylomicrobium album BG8]
Length = 474
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA---ALPYFDEIDPSAIDVLLITHFHL 86
GA V SC + GK +L DCG++ M A P+ DP+ ID LL+TH HL
Sbjct: 7 GADQNVTGSCHLLEAAGKKMLIDCGLYQGGREMEEENAEPF--GFDPAGIDYLLLTHAHL 64
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
DH +P L K F G + T AT + +++L D K+
Sbjct: 65 DHCGRIP-LLVKQGFKGEIIATAATCELARIVLLDSAKL 102
>gi|312792978|ref|YP_004025901.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180118|gb|ADQ40288.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 822
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + K IL D GI + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
HLDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVED 117
Query: 143 SMDR 146
+DR
Sbjct: 118 LLDR 121
>gi|70608064|ref|YP_256934.1| hypothetical protein Saci_2362 [Sulfolobus acidocaldarius DSM 639]
gi|449068310|ref|YP_007435392.1| hypothetical protein SacN8_11500 [Sulfolobus acidocaldarius N8]
gi|449070628|ref|YP_007437709.1| hypothetical protein SacRon12I_11745 [Sulfolobus acidocaldarius
Ron12/I]
gi|68568712|gb|AAY81641.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
gi|449036818|gb|AGE72244.1| hypothetical protein SacN8_11500 [Sulfolobus acidocaldarius N8]
gi|449039136|gb|AGE74561.1| hypothetical protein SacRon12I_11745 [Sulfolobus acidocaldarius
Ron12/I]
Length = 422
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG G EVGR+ + +S I+ D G++ + LP + P+ + +++H HLDH
Sbjct: 9 LGGGREVGRAAIEVSKGDSAIILDYGVNFDQNDNPNLPL--QETPNRVKGFVVSHSHLDH 66
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
SLP + + + S VF T TK I +L+L D++K+S + F+ ++ R+MD
Sbjct: 67 VGSLPLY--QISGSYPVFGTMMTKLITELMLKDFLKLSGAR---LPFEWMEVKRTMDNFR 121
Query: 149 VC 150
Sbjct: 122 TV 123
>gi|330836718|ref|YP_004411359.1| beta-lactamase domain-containing protein [Sphaerochaeta coccoides
DSM 17374]
gi|329748621|gb|AEC01977.1| beta-lactamase domain protein [Sphaerochaeta coccoides DSM 17374]
Length = 560
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITHFHLD 87
GA V SC +S G IL DCG+ G DE+ +DV+L+TH H+D
Sbjct: 7 GAARHVTGSCFMLSADGMNILIDCGL---AQGTDERVQGDELPFKAETVDVMLLTHAHID 63
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+ +P L K FSG ++ T AT+ + +++L D + ++ E
Sbjct: 64 HSGRIP-LLVKEGFSGAIYATEATRNLCEIMLADSAHIQQMETE 106
>gi|325284382|ref|YP_004256922.1| beta-lactamase domain protein [Deinococcus proteolyticus MRP]
gi|324316446|gb|ADY27559.1| beta-lactamase domain protein [Deinococcus proteolyticus MRP]
Length = 526
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG +EVG S + +L D G+ P G AALP D ++ + +++TH HLDH
Sbjct: 8 LGGTDEVGASSYLYHFTEGRLLIDAGLRPGMIGDAALPQLDVLNDAPPGAVILTHAHLDH 67
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
++LP L + ++ T AT + L L D +++ + + ML+ +D+ R+ +
Sbjct: 68 VSALPVVLRRYP-KLHIYCTPATAHLAALTLADSLRIMEAQGQ-MLYSPEDMKRTFE 122
>gi|52841255|ref|YP_095054.1| metallo-beta lactamase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52628366|gb|AAU27107.1| metallo-beta lactamase family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 453
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A LP IDP ID ++ITH
Sbjct: 6 LGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH+ LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPD 98
>gi|406909978|gb|EKD50113.1| hypothetical protein ACD_62C00649G0003 [uncultured bacterium]
Length = 452
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVL 79
L++ LGA V S ++ K +L DCG+ + G+ L + +DP +D +
Sbjct: 3 LSVQFLGATGTVTGSRYLLTNNNKRVLIDCGM---FQGLKDLRLRNWTPFPVDPKTLDAI 59
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LITH HLDH+ LP + K F+GR+ T AT A+ K+LL D + + E
Sbjct: 60 LITHAHLDHSGYLPRLV-KHGFAGRIIATEATCALLKILLPDAAYLQEEDAE 110
>gi|448647157|ref|ZP_21679441.1| metal-dependent RNase [Haloarcula sinaiiensis ATCC 33800]
gi|445754714|gb|EMA06115.1| metal-dependent RNase [Haloarcula sinaiiensis ATCC 33800]
Length = 600
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ + P G G EVGRSC + + T L DCG + G P + P +D + +TH
Sbjct: 32 MAVTPRGGGREVGRSCYQLDTQYGTYLIDCGF--SQGGDDKFPDLRGLSPDDVDSVFLTH 89
Query: 84 FHLDHAASLPYFLEKTTF--SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
H+DH+ LP + ++F T T I + LL D +K+ D ++Q
Sbjct: 90 AHIDHSGGLPVLENRGLLDDDAKIFATEPTIQIAQTLLQDSLKLHLRETADGAAEQQ 146
>gi|20092670|ref|NP_618745.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
gi|19917954|gb|AAM07225.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
Length = 637
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S IL DCG++ M Y E+ P + ID +++
Sbjct: 181 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIV 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K + G V+ T T+ + LL DY+ V+
Sbjct: 241 THAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVA 284
>gi|21226797|ref|NP_632719.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452209278|ref|YP_007489392.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
gi|20905093|gb|AAM30391.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452099180|gb|AGF96120.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
Length = 637
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S IL DCG++ M Y E+ P + ID +++
Sbjct: 181 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIV 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K + G V+ T T+ + LL DY+ V+
Sbjct: 241 THAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVA 284
>gi|15922516|ref|NP_378185.1| cleavage and polyadenylation specificity factor small subunit
[Sulfolobus tokodaii str. 7]
gi|342306664|dbj|BAK54753.1| ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 422
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+ +I LG G EVGR+ + ++ ++I+ D G++ + LP E+ PS + +++
Sbjct: 2 EYSIKILGGGKEVGRAAIEVTTSSESIILDYGVNFDANDNPNLP-LQEV-PSRVKGFIVS 59
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +LP + F +F T T+ I +L+L D++K+S V F+ ++ +
Sbjct: 60 HSHLDHVGALPLYQISGNFP--IFGTRLTRLITELMLKDFLKLSGAKVP---FEWTEVRK 114
Query: 143 SMDR 146
MD
Sbjct: 115 VMDN 118
>gi|359402110|ref|ZP_09195054.1| beta-lactamase-like protein [Novosphingobium pentaromativorans
US6-1]
gi|357596513|gb|EHJ58287.1| beta-lactamase-like protein [Novosphingobium pentaromativorans
US6-1]
Length = 452
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
LT+ LG V S ++ K IL DCG+ + L + I PS+ID +++T
Sbjct: 2 LTLTSLGGAGTVTGSKHLLTCGNKHILVDCGLFQGLKNLRELNWQTLPIKPSSIDAVILT 61
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H HLDH+ LP + + F GR++ T AT+ + +L+L D
Sbjct: 62 HAHLDHSGYLPKLV-RDGFRGRIYSTDATRDVAELILKD 99
>gi|296135595|ref|YP_003642837.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
gi|295795717|gb|ADG30507.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
Length = 476
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY----FDEIDPSAIDVLLITHF 84
LGA EV SC + L DCG+ G AL FD DP +ID +L+TH
Sbjct: 6 LGAAREVTGSCFLIETADTRFLVDCGM--VQGGRDALARNHNPFD-FDPKSIDFVLLTHA 62
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+DH+ LP L + F G ++MT AT + +++L D + + VE
Sbjct: 63 HIDHSGLLPK-LTRAGFEGPIYMTSATADLLQVMLPDSAHIQESDVE 108
>gi|153854688|ref|ZP_01995938.1| hypothetical protein DORLON_01936 [Dorea longicatena DSM 13814]
gi|149752792|gb|EDM62723.1| metallo-beta-lactamase domain protein [Dorea longicatena DSM 13814]
Length = 535
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
GA +EV SC + GK IL DCG+ P LP + P +D +L+TH H+
Sbjct: 6 FGAAHEVTGSCHLLEACGKNILIDCGMEQGPDLYENQELP----VTPGEVDYILLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ ++P ++K FSG + T AT + ++L D + + E
Sbjct: 62 DHSGNIPLLVKK-GFSGEIITTFATADLCDIMLRDSAHIQEFEAE 105
>gi|399024769|ref|ZP_10726797.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
gi|398079754|gb|EJL70595.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chryseobacterium sp. CF314]
Length = 455
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAID 77
D + + LG V S + TIL DCG+ + G+ +L + +D + ID
Sbjct: 2 DTIILKSLGGAETVTGSKHLLKTSELTILVDCGL---FQGIKSLREQNWESLNVDVAEID 58
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
++++TH HLDH +P L K F G+++MT TK + KL+L D K+ + E F
Sbjct: 59 IVILTHAHLDHCGYIP-LLVKNGFKGKIYMTEPTKELAKLILLDSAKLQEEDAEKANF 115
>gi|73667742|ref|YP_303757.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
gi|72394904|gb|AAZ69177.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
Length = 637
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S IL DCG++ M Y E+ P + ID +++
Sbjct: 181 VRVTSLGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIV 240
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K + G V+ T T+ + LL DY+ V+
Sbjct: 241 THAHLDHQGLVP-LLFKFGYEGPVYCTPPTRDLMVLLQLDYIDVA 284
>gi|333910143|ref|YP_004483876.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333750732|gb|AEF95811.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 426
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA EVGRSC+ + IL DCG+ G P + +D +D + ++H HLDH
Sbjct: 7 GAAMEVGRSCIEIDSGESKILLDCGVKLTGEG----PKYPILDNIKVDGVFVSHAHLDHV 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+LP L + + T TK I K+LL D +K+ V F+ DI + ++
Sbjct: 63 GALP-ILTHNQINAPIHSTPLTKEITKVLLKDSLKIEMVEHISPKFNMHDIKKCIN 117
>gi|308198432|pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
gi|308198433|pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLI 81
+ + LG EVGRSC +S IL DCG++ M Y E+ P + ID +++
Sbjct: 184 VRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIV 243
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
TH HLDH +P L K + G V+ T T+ + LL DY+ V+
Sbjct: 244 THAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVA 287
>gi|359414339|ref|ZP_09206804.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
gi|357173223|gb|EHJ01398.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
Length = 863
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
+E + I LG EVG S + + K IL D GI + S ++P F I + +D
Sbjct: 11 KEWSYININFLGGALEVGGSSILVKINNKNILLDAGIRQSAS-KDSVPNFRAIQNYGGLD 69
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++I+H HLDH LP + K +++M + TK + ++LL D +K+ + E L+
Sbjct: 70 AIIISHAHLDHIGCLP-IISKEYPEAKIYMNNMTKDLVRVLLYDSLKIMNNRDAEIPLYA 128
Query: 137 EQDINRSMDRI 147
E D+ +++RI
Sbjct: 129 EGDVVSTLNRI 139
>gi|119389195|pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389196|pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389197|pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389198|pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I+P GA EV S + G+ +L DCG F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGXFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + + G V+ T AT + +++L D +KV ++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLXEIVLEDALKVX----DEPFFGPEDVEEALG 116
Query: 146 RI 147
+
Sbjct: 117 HL 118
>gi|148360321|ref|YP_001251528.1| metallo-beta lactamase family transporter protein [Legionella
pneumophila str. Corby]
gi|296106617|ref|YP_003618317.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
gi|148282094|gb|ABQ56182.1| metallo-beta lactamase family [Legionella pneumophila str. Corby]
gi|295648518|gb|ADG24365.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
Length = 453
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A LP IDP ID ++ITH
Sbjct: 6 LGATQTVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLP-LLVKNGFQGKIYATPGTKALCSILLPD 98
>gi|146304363|ref|YP_001191679.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145702613|gb|ABP95755.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 421
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGR+ + +S ++++ D G++ P + PS + +++H HLDH
Sbjct: 8 LGGGNEVGRAGIEISNSSESLILDYGVNFNQKDEPNFPLQE--SPSKVKGFVVSHAHLDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
+LP + + + S V+ T +K I +L+L D++K+S V F+ ++ ++MD
Sbjct: 66 VGALPIY--QISSSKPVYGTGISKYITELMLKDFIKLSGPKVP---FEWVEVKKTMDN 118
>gi|225389087|ref|ZP_03758811.1| hypothetical protein CLOSTASPAR_02833 [Clostridium asparagiforme
DSM 15981]
gi|225044851|gb|EEG55097.1| hypothetical protein CLOSTASPAR_02833 [Clostridium asparagiforme
DSM 15981]
Length = 535
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
Q+ + +GA +EV SC Y+ +L DCG+ + P + + ID +L+T
Sbjct: 2 QMKLTFIGADHEVTGSCHYLEVGNTKLLVDCGMEQGNNVYENAPL--PVPYNQIDYVLLT 59
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H H+DHA LP+ K F GR+ T+AT + ++L D + ++ E
Sbjct: 60 HAHIDHAGLLPWLYAK-GFKGRIITTYATADLCNIMLVDSAHIQEMESE 107
>gi|355571913|ref|ZP_09043121.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
gi|354825009|gb|EHF09244.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
Length = 629
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
RDV + ++T+ LG EVGR+ +S +L DCG P S Y EI
Sbjct: 170 RDVIARDQWVRVTM--LGCCREVGRAAFLLSTPESRVLIDCGEKPDNSASTPYLYVPEIH 227
Query: 73 P-SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
P S +D +++TH HLDH A +P L K + G V+ T T+ + +L DY+ V VS E
Sbjct: 228 PLSQLDAVVLTHAHLDHCALVP-LLFKYGYDGPVYSTPPTRDLSAMLQLDYLDV--VSKE 284
Query: 132 D 132
D
Sbjct: 285 D 285
>gi|330835859|ref|YP_004410587.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329567998|gb|AEB96103.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 638
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYF--DEIDPSAIDVLLIT 82
+ LGA EVGRS V + IL D G++P+ + G P D++ +D +++T
Sbjct: 181 VTALGAFQEVGRSAVLVETPESRILMDVGVNPSVNFGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K + G V+ T T+ I L+ D + V+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYEGPVYTTQPTRDIMALMQLDMLDVADKEGRPLPYSAKEVRK 299
Query: 143 SM 144
+
Sbjct: 300 EL 301
>gi|386284273|ref|ZP_10061495.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. AR]
gi|385344558|gb|EIF51272.1| RNA-metabolising metallo-beta-lactamase [Sulfurovum sp. AR]
Length = 466
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 25 TIIPLGAGNEVGRSCVYMSYK-GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
T+ GA V SC ++ + G IL DCG+ F DPS ID LLITH
Sbjct: 3 TVTSHGAAKVVTGSCHLLAIEHGPRILIDCGMFQGPEEDRNYSAFG-FDPSEIDYLLITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLL------------TDYVKVSKVSVE 131
HLDH +P + K F G ++ T AT+ I +++L T+Y K + E
Sbjct: 62 AHLDHVGRIPKLV-KEGFRGVIYATEATRDIAEIILLDSAKIMKEDFETNYRKAQRKGKE 120
Query: 132 DM----LFDEQDINRSMD 145
D L+DE D+ + D
Sbjct: 121 DEVMAPLYDEDDVEAAFD 138
>gi|374636818|ref|ZP_09708366.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557805|gb|EHP84189.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 426
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA EVGRSC+ + IL DCG+ +G+ P D+I +D + ++H HLDH
Sbjct: 7 GAAMEVGRSCIEIDSGESKILLDCGVKLTGNGI-EYPILDDI---KVDGVFVSHAHLDHV 62
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+LP K + + T TK I K+LL D +K+ + F+ DI + ++
Sbjct: 63 GALPVLTHK-QINVPIHSTPLTKEITKILLKDSLKIGMIEHISQKFNMHDIKKCIN 117
>gi|448736741|ref|ZP_21718828.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
gi|445805838|gb|EMA56034.1| metal-dependent RNase [Halococcus thailandensis JCM 13552]
Length = 606
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
L DV + E + + P G EVGRSC + + T+L DCG++ + P F
Sbjct: 22 LAHADVEIDAE-TPIAVTPRGGAREVGRSCYQVDTEFSTVLVDCGLNQGTGD--SFPDFR 78
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKV-- 125
++P ++ + +TH H+DH+ LP + + + T T I K LL D +K+
Sbjct: 79 GLEPGSVGAVFLTHAHIDHSGGLPILEARGLLADDAPIIATPPTIEIAKTLLEDSLKIHR 138
Query: 126 --SKVSVEDMLFDEQDINRSMDRIE 148
S+ + E+ + E + +R E
Sbjct: 139 RESRHAGEEQQYVEAHVEAIFERFE 163
>gi|397666698|ref|YP_006508235.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130109|emb|CCD08342.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A LP IDP ID ++ITH
Sbjct: 6 LGATETVTGSKYLLTVGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLP-LLVKNGFQGKIYATPGTKALCSILLPD 98
>gi|110598396|ref|ZP_01386669.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Chlorobium ferrooxidans DSM 13031]
gi|110340005|gb|EAT58507.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Chlorobium ferrooxidans DSM 13031]
Length = 463
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAY---SGMAALPYFDEIDPSAIDVLLITHFHL 86
GA V SC + G T+L DCG+ + A P+ DPSA+D +++TH H+
Sbjct: 7 GATGRVTGSCHILRVGGATVLLDCGLIQGSREDEALNAEPF--PFDPSAVDAVVLTHGHI 64
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ LP L K F+G V+ AT + ++LL D + + D +F ++ + DR
Sbjct: 65 DHSGRLP-LLVKKGFAGPVYTQQATVDLCRVLLLDSASLGE---RDAIFRQKHPQSAGDR 120
>gi|448298653|ref|ZP_21488681.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
gi|445591323|gb|ELY45529.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
Length = 645
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|429192458|ref|YP_007178136.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|448325869|ref|ZP_21515248.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|429136676|gb|AFZ73687.1| KH-domain/beta-lactamase-domain protein [Natronobacterium gregoryi
SP2]
gi|445614014|gb|ELY67697.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
Length = 644
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSM 144
+ ++
Sbjct: 299 QVREAI 304
>gi|118576728|ref|YP_876471.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
gi|118195249|gb|ABK78167.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
Length = 645
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDE--IDPSAIDVL 79
++++ LG +VGRSC+ +S +L DCG++P A + P D I +D +
Sbjct: 187 EISLTALGGFGQVGRSCMLLSTLDSKVLVDCGVNPGAAHPSESYPRLDWAGITLDDLDAV 246
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP L K + G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 247 VIGHAHLDHTGFLP-VLAKYGYRGPIYCTEPTLPMMNLIQLDAIKVATAQGRVPVYAERD 305
Query: 140 INRSM 144
+ + M
Sbjct: 306 VRQIM 310
>gi|383621866|ref|ZP_09948272.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|448702794|ref|ZP_21700151.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|445776887|gb|EMA27863.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
Length = 644
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSM 144
+ ++
Sbjct: 299 QVREAI 304
>gi|397667286|ref|YP_006508823.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130697|emb|CCD08943.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A LP IDP ID ++ITH
Sbjct: 6 LGATETVTGSKYLLTVGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP L K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLP-LLVKNGFRGKIYATPGTKALCSILLPD 98
>gi|225375610|ref|ZP_03752831.1| hypothetical protein ROSEINA2194_01235 [Roseburia inulinivorans DSM
16841]
gi|225212589|gb|EEG94943.1| hypothetical protein ROSEINA2194_01235 [Roseburia inulinivorans DSM
16841]
Length = 534
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+++ K +L DCG+ P +P ++ +A+D + +TH H+
Sbjct: 6 LGAAHEVTGSCHYVTFGDKHVLVDCGMEQGPDLYVNQEIP----VNAAAVDYVFVTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ LP L F G++F T AT + ++L D + +F+ + NR R
Sbjct: 62 DHSGLLP-LLYNHGFRGQIFATEATTQLCNIMLKDSAHIQ-------MFEAEWRNRKAKR 113
>gi|448346325|ref|ZP_21535211.1| KH-domain/beta-lactamase-domain protein [Natrinema altunense JCM
12890]
gi|445632914|gb|ELY86120.1| KH-domain/beta-lactamase-domain protein [Natrinema altunense JCM
12890]
Length = 644
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|169338048|ref|ZP_02863185.1| metallo-beta-lactamase family protein [Clostridium botulinum C str.
Eklund]
gi|169295238|gb|EDS77371.1| metallo-beta-lactamase family protein [Clostridium botulinum C str.
Eklund]
Length = 116
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAY----SGMAALPYFDEIDPSAIDVLLITHFH 85
GA V SC M + KTIL DCG+ G P+ DP ID ++++H H
Sbjct: 7 GAAKCVTGSCHIMRFNKKTILLDCGLFQGKDEKIRGNDEFPF----DPKKIDYVILSHAH 62
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+DH+ +P L K F G V T ATK + ++L D + + E
Sbjct: 63 IDHSGRIP-LLYKKGFKGEVICTRATKELCNIMLPDSGYIQETETE 107
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
+D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E
Sbjct: 40 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 99
Query: 135 FDEQDINRSMDRI 147
F Q I M ++
Sbjct: 100 FTSQMIKDCMKKV 112
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG------MAALPYFDEIDPSA 75
D + + +G EVGRSC+ + +L DCG++ A M +P F D
Sbjct: 178 DWVRLTAMGGFKEVGRSCMLLQTPNSRVLLDCGVNVAGQDDKTSFPMLGVPEFSIQD--- 234
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H HLDH +PY L + G V+ T AT+ + LL DY+ ++ + F
Sbjct: 235 LDAVVLSHAHLDHCGFIPY-LYHYGYEGPVYCTSATRDLMTLLQMDYIDIAHRDNNPLPF 293
Query: 136 DEQDINRSM 144
+ + + + +
Sbjct: 294 NAKHVQKEV 302
>gi|448313752|ref|ZP_21503464.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
gi|445597062|gb|ELY51140.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
Length = 644
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFIISTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSM 144
+ ++
Sbjct: 299 QVREAI 304
>gi|296242984|ref|YP_003650471.1| KH-domain/beta-lactamase-domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296095568|gb|ADG91519.1| KH-domain/beta-lactamase-domain protein [Thermosphaera aggregans
DSM 11486]
Length = 651
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFD--EIDPSAIDVLLI 81
I LG EVGRS + + + +L D GI+ A PY D + +D +++
Sbjct: 190 ITALGGFREVGRSSILVETRESRLLLDMGINTGVMDDPFKAFPYIDVDSLKLEELDGVIV 249
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
TH HLDH +P L K + G +++T T+ + ++L D ++VS+ S + F E+D+
Sbjct: 250 THSHLDHVGLVP-ILYKYGYRGPLYVTKPTRELMIVMLKDLIEVSRRSGRYLPFTEKDL 307
>gi|448391639|ref|ZP_21566734.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
salina JCM 13891]
gi|445665051|gb|ELZ17729.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
salina JCM 13891]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|347532112|ref|YP_004838875.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia hominis A2-183]
gi|345502260|gb|AEN96943.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia hominis A2-183]
Length = 535
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+ + K +L DCG+ P +P ++ S ID + +TH H+
Sbjct: 6 LGAAHEVTGSCHYLEFADKHVLVDCGMEQGPDLYVNQEIP----VNASTIDYVFVTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ LP L F G++F T AT + +++L D + +F+ + NR R
Sbjct: 62 DHSGLLP-MLYNHGFRGQIFTTTATHQLCEIMLKDSAHIQ-------MFEAEWKNRKAKR 113
>gi|284165869|ref|YP_003404148.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
turkmenica DSM 5511]
gi|284015524|gb|ADB61475.1| KH-domain/beta-lactamase-domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|258514362|ref|YP_003190584.1| beta-lactamase domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778067|gb|ACV61961.1| beta-lactamase domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 522
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
LGA V SC +S GK I+ DCG+ + Y D I P ++ +++TH H+D
Sbjct: 6 LGAAQTVTGSCHLLSVDGKNIMIDCGMFQGTKAIKERNYQDFLIPPKSLACVILTHAHID 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+ LP + K + G V++T AT + +++L D + + VE
Sbjct: 66 HSGLLPKLV-KQGYKGPVYVTEATGDLLEVMLPDSGHIQETEVE 108
>gi|448330809|ref|ZP_21520085.1| KH-domain/beta-lactamase-domain-containing protein [Natrinema
versiforme JCM 10478]
gi|445610645|gb|ELY64414.1| KH-domain/beta-lactamase-domain-containing protein [Natrinema
versiforme JCM 10478]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVA 286
>gi|433590934|ref|YP_007280430.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448334467|ref|ZP_21523642.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448385409|ref|ZP_21563915.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305714|gb|AGB31526.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445619799|gb|ELY73316.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445656904|gb|ELZ09736.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVA 286
>gi|319763536|ref|YP_004127473.1| RNA-metabolising metallo-beta-lactamase [Alicycliphilus
denitrificans BC]
gi|317118097|gb|ADV00586.1| RNA-metabolising metallo-beta-lactamase [Alicycliphilus
denitrificans BC]
Length = 470
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL---PYFDEIDPSAIDVLLITHFH 85
LGA EV SC + G L DCG+ S AA P+ DP+AID +L+TH H
Sbjct: 6 LGAAREVTGSCFLVEAAGLRFLVDCGMVQGGSAAAARNREPF--PFDPAAIDFVLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+DH+ LP L + F G ++ T AT + ++L D + E D RS
Sbjct: 64 IDHSGLLPK-LTRAGFKGAIYTTPATVDLLGVMLPDSAHIQ----------ESDAKRSAK 112
Query: 146 R 146
R
Sbjct: 113 R 113
>gi|167770103|ref|ZP_02442156.1| hypothetical protein ANACOL_01446 [Anaerotruncus colihominis DSM
17241]
gi|167667735|gb|EDS11865.1| metallo-beta-lactamase domain protein [Anaerotruncus colihominis
DSM 17241]
Length = 544
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+ GK IL DCG+ P +P + P +D +L+TH H+
Sbjct: 16 LGAAHEVTGSCHYLQACGKKILIDCGMQQGPDEYEHQEMP----LAPGEVDFVLLTHAHI 71
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ LP L K F G + T AT + ++L D + + E
Sbjct: 72 DHSGRLP-LLAKNGFHGTICATDATCDLCGIMLRDSAHIQEFEAE 115
>gi|448448791|ref|ZP_21591376.1| beta-lactamase [Halorubrum litoreum JCM 13561]
gi|445814265|gb|EMA64232.1| beta-lactamase [Halorubrum litoreum JCM 13561]
Length = 641
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVILTHAHLDHSALVP-LLYKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|448424329|ref|ZP_21582379.1| beta-lactamase [Halorubrum terrestre JCM 10247]
gi|448506359|ref|ZP_21614469.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|448524796|ref|ZP_21619438.1| beta-lactamase [Halorubrum distributum JCM 10118]
gi|445682322|gb|ELZ34741.1| beta-lactamase [Halorubrum terrestre JCM 10247]
gi|445700009|gb|ELZ52027.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|445700162|gb|ELZ52173.1| beta-lactamase [Halorubrum distributum JCM 10118]
Length = 641
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVILTHAHLDHSALVP-LLYKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|134298573|ref|YP_001112069.1| beta-lactamase domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134051273|gb|ABO49244.1| beta-lactamase domain protein [Desulfotomaculum reducens MI-1]
Length = 525
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
LGA V SC + +L DCG+ + Y + + PS++D +L+TH H+D
Sbjct: 6 LGAAQTVTGSCFLVEAGATRLLVDCGLFQGSKEIKERNYRNFPLAPSSVDFILLTHAHID 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
H+ LP F+ K F G+V T AT + ++LL D + ++ VE
Sbjct: 66 HSGLLPKFI-KQGFKGKVIATSATVDLCEILLPDCGHIQEMEVE 108
>gi|448400247|ref|ZP_21571314.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
limicola JCM 13563]
gi|445667787|gb|ELZ20427.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
limicola JCM 13563]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|266624290|ref|ZP_06117225.1| metallo-beta-lactamase family protein [Clostridium hathewayi DSM
13479]
gi|288863871|gb|EFC96169.1| metallo-beta-lactamase family protein [Clostridium hathewayi DSM
13479]
Length = 533
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDEIDPSAIDVLLI 81
+ ++ +GA +EV SC Y+ G IL DCG+ Y A LP + S ID +L+
Sbjct: 1 MKLMFIGADHEVTGSCHYLEAAGLKILVDCGMKQGVDYFENAELP----VSYSEIDYVLL 56
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DHA +P F+ F G + T AT + ++L D + + E
Sbjct: 57 THAHIDHAGMIP-FIYARGFRGEIITTEATADLCNIMLKDSAHIQESEAE 105
>gi|440781793|ref|ZP_20960021.1| metallo-beta-lactamase family protein [Clostridium pasteurianum DSM
525]
gi|440220511|gb|ELP59718.1| metallo-beta-lactamase family protein [Clostridium pasteurianum DSM
525]
Length = 511
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA V SC + KTIL DCG++ DP +D ++++H H+DH+
Sbjct: 7 GAAGCVTGSCHILRVSNKTILLDCGLYQGKDEKEIGNDGFNFDPKKVDYVILSHAHIDHS 66
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+P L K F G+VF T+AT+ + +L D + ++ VE +++ R +D IE
Sbjct: 67 GRIP-LLYKKGFKGQVFCTNATRDLCSAMLVDSGYIQEMEVE--WKNKKRRRRGLDAIE 122
>gi|210608670|ref|ZP_03287947.1| hypothetical protein CLONEX_00126 [Clostridium nexile DSM 1787]
gi|210152927|gb|EEA83933.1| hypothetical protein CLONEX_00126 [Clostridium nexile DSM 1787]
Length = 535
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
+GA +EV SC + GK IL DCG+ P LP I P ID +L+TH H+
Sbjct: 6 IGAAHEVTGSCHLLETNGKHILIDCGMEQGPDLYENQELP----IAPGDIDFILLTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DH+ +P + K F G++ T AT + ++L D + + E
Sbjct: 62 DHSGLIPLMV-KNGFKGQIVTTFATADLCDIMLRDSAHIQEFEAE 105
>gi|344996811|ref|YP_004799154.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965030|gb|AEM74177.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 822
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+ LG EVG SCV + K IL D G+ + L E+ +DV LI+H
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGMRMKEDKLPNLQLLREL--GGVDVCLISH 58
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
HLDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 59 AHLDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVED 117
Query: 143 SMDR 146
+DR
Sbjct: 118 LLDR 121
>gi|163783204|ref|ZP_02178198.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
gi|159881538|gb|EDP75048.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
Length = 458
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I P GA V SC + +G +L DCG+ F +P ID L++TH
Sbjct: 3 IRITPCGAARTVTGSCHLVEVEGTKLLIDCGMFQGEEEEKNYEPFP-FEPGEIDFLILTH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
H+DH +P L K F G++ T T I K++L D KV
Sbjct: 62 AHIDHCGRIP-LLVKEGFKGKILCTRPTAQIAKIMLLDAAKV 102
>gi|399074890|ref|ZP_10751269.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Caulobacter sp. AP07]
gi|398039894|gb|EJL33017.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Caulobacter sp. AP07]
Length = 553
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GA V SC + + TIL DCG+ + AL Y + DPS ID +L+TH H+DH
Sbjct: 9 GAAGCVTGSCARLQTQEATILVDCGMFQGSKTLKALNYGEFPFDPSQIDAVLLTHAHVDH 68
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
LP + F G ++ T AT+ + ++L D
Sbjct: 69 CGLLPKLM-LAGFEGPIYATAATRDLCAVMLAD 100
>gi|307353378|ref|YP_003894429.1| KH-domain/beta-lactamase-domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156611|gb|ADN35991.1| KH-domain/beta-lactamase-domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 629
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SA 75
V+ + + + LG EVGR+ +S IL DCG P + Y EI P +
Sbjct: 172 VTSKDKWVRVTTLGCCREVGRAAFLLSTPESKILIDCGEKPGSTEGVPYLYVPEIYPLNT 231
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+D +++TH HLDH A +P L + F G V+ T AT+ + +L DY++V
Sbjct: 232 LDAVVLTHAHLDHCALVP-LLYRYGFEGPVYSTPATRDLAVMLQLDYLEV 280
>gi|448735735|ref|ZP_21717923.1| metal-dependent RNase [Halococcus salifodinae DSM 8989]
gi|445797313|gb|EMA47789.1| metal-dependent RNase [Halococcus salifodinae DSM 8989]
Length = 603
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
L D+ + E + + P G EVGRSC + + T L DCG++ + P F
Sbjct: 15 LAHADIEIDTE-TPIAVTPRGGAREVGRSCYQVDTEFSTTLVDCGLNQGTGD--SFPDFR 71
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS--GRVFMTHATKAIYKLLLTDYVKV-- 125
++P +I + +TH H+DH+ LP + + + T T I K LL D +K+
Sbjct: 72 GLEPGSIGAVFLTHAHIDHSGGLPILEARGLLADDAPIIATPPTIEIAKTLLEDSLKIHR 131
Query: 126 --SKVSVEDMLFDEQDINRSMDRIE 148
S+ + E+ + E + +R E
Sbjct: 132 RESRHAGEEQQYVESHVEDVFERFE 156
>gi|336252222|ref|YP_004595329.1| KH-domain/beta-lactamase-domain-containing protein [Halopiger
xanaduensis SH-6]
gi|335336211|gb|AEH35450.1| KH-domain/beta-lactamase-domain protein [Halopiger xanaduensis
SH-6]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSM 144
+ ++
Sbjct: 299 QVREAI 304
>gi|330834491|ref|YP_004409219.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329566630|gb|AEB94735.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 425
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+ +I LG GNEVGR+ + +S ++++ D G++ P E+ PS + +++
Sbjct: 6 EYSIKILGGGNEVGRAGIEVSNSNESVILDYGVNFNQKDEPNFP-LQEV-PSKVSGFVVS 63
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +LP + + + + ++ T +K I +L+L D++K+S V ++ ++ +
Sbjct: 64 HAHLDHVGALPIY--QISSTKPIYGTGISKYITELMLKDFIKLSGPKVP---YEWVEVKK 118
Query: 143 SMDR 146
SMD
Sbjct: 119 SMDN 122
>gi|289192409|ref|YP_003458350.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
gi|288938859|gb|ADC69614.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
Length = 427
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ II GA EVGRSC+ + IL DCG+ P D +D + I+H
Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP + V T +K + K+LL D V++++ + + ++ D+ +
Sbjct: 58 AHLDHSGALPILFHR-RIDVPVITTELSKKLIKILLKDMVRIAETENKKIPYNNHDVKEA 116
Query: 144 M 144
M
Sbjct: 117 M 117
>gi|237653830|ref|YP_002890144.1| RNA procession exonuclease-like protein [Thauera sp. MZ1T]
gi|237625077|gb|ACR01767.1| exonuclease of the beta-lactamase fold involved in RNA
processing-like protein [Thauera sp. MZ1T]
Length = 140
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 21/125 (16%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGK--TILFDCGIH------PAYSGMAALPYFDEIDPSAID 77
+ PLG +V SC ++ +G+ + L DCG+ P ++ P+ PS I
Sbjct: 6 VGPLG---KVTGSCAWLRDEGRKWSFLVDCGMQQGEYDAPRWNRGELWPF----KPSDIQ 58
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH H+DH+ LP L + F G+VF T AT+ I ++LL D + S +DE
Sbjct: 59 FVILTHAHIDHSGLLPE-LYRQGFKGQVFCTRATRKIAEVLLRDAARFSATP-----YDE 112
Query: 138 QDINR 142
D++R
Sbjct: 113 GDVDR 117
>gi|357416437|ref|YP_004929457.1| beta-lactamase-like protein [Pseudoxanthomonas spadix BD-a59]
gi|355334015|gb|AER55416.1| beta-lactamase-like protein [Pseudoxanthomonas spadix BD-a59]
Length = 451
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GAG G S +S+ GK IL DCG+ + L + + P A+D +++TH HLDH
Sbjct: 8 GAGTVTG-SKHLLSHNGKHILVDCGLFQGLKNLRELNWEPLPVAPKALDAVVLTHAHLDH 66
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
+ LP + + F GR++ T AT+ + +L+L D
Sbjct: 67 SGYLPKLV-RDGFRGRIYATAATRDVAELILKD 98
>gi|410692494|ref|YP_003623115.1| putative mRNA cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
gi|294338918|emb|CAZ87258.1| putative mRNA cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
Length = 460
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC + +GK +L DCG+ + G L + DP +ID+LL+TH H
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHELDEENAEDFGFDPKSIDLLLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LDH +P L K F G + T AT+ + +++L D + + E
Sbjct: 64 LDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAE 108
>gi|225155848|ref|ZP_03724334.1| beta-lactamase domain protein [Diplosphaera colitermitum TAV2]
gi|224803398|gb|EEG21635.1| beta-lactamase domain protein [Diplosphaera colitermitum TAV2]
Length = 452
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 35 VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPY 94
+G +C + ++ D G+HP +G A+P F ++ ID++L+TH HLDH SLP
Sbjct: 12 IGANCTLLQIGDINLVIDSGLHPKIAGRQAVPDFAKLRNLEIDLILVTHCHLDHIGSLPV 71
Query: 95 FLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED------MLFDEQDINRSMDR 146
+ + V M+ A++ + + +L + V K E+ LF +DI+R R
Sbjct: 72 LMREHPRPP-VMMSTASQMLVERMLHNSANVMKRQKEEDNIPEYPLFTHEDIDRLAPR 128
>gi|159901774|ref|YP_001548019.1| beta-lactamase domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159894813|gb|ABX07891.1| beta-lactamase domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 830
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFDEIDPSAIDVLLITHFHL 86
P G EVG SC + + IL D G+ PA G + P + + +D +LITH H+
Sbjct: 50 PFGGAQEVGASCGILKLGMRHILVDAGMRPAARPGQSRTPDLEALKGFPLDAILITHAHI 109
Query: 87 DHAASLPYFLEKTTF-SGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDEQDI 140
DH LP L + F + ++ T +T A+ ++LL D ++ + +E L+D+ +
Sbjct: 110 DHTGCLP--LVASLFPTVPIYATESTIALMRILLLDSARIMEQEHLAHELETPLYDQAMV 167
Query: 141 NRSMDRI 147
++ RI
Sbjct: 168 TETLARI 174
>gi|296134936|ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
gi|295795058|gb|ADG29848.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
Length = 460
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC + +GK +L DCG+ + G L + DP +ID+LL+TH H
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHELDEENAEDFGFDPKSIDLLLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LDH +P L K F G + T AT+ + +++L D + + E
Sbjct: 64 LDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAE 108
>gi|448301186|ref|ZP_21491181.1| beta-lactamase [Natronorubrum tibetense GA33]
gi|445584700|gb|ELY39015.1| beta-lactamase [Natronorubrum tibetense GA33]
Length = 648
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLL 80
D + + LG EVGR+ + IL DCG P G + E P + +D ++
Sbjct: 194 DWVRVTTLGCCREVGRASFVLHTPNTKILIDCGDKPGAEGEVPYLHVPEAMPLTELDAVV 253
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+TH HLDH+A LP L K + G ++ T T+ + LL DY+ V+
Sbjct: 254 LTHAHLDHSALLP-LLFKYGYDGPIYTTEPTRDLMGLLQLDYLDVA 298
>gi|448358886|ref|ZP_21547560.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445644566|gb|ELY97579.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 644
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|448306255|ref|ZP_21496164.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
gi|445598669|gb|ELY52724.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
Length = 645
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|410693709|ref|YP_003624330.1| putative mRNA Cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
gi|294340133|emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
Length = 460
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC + +GK +L DCG+ + G L + DP +ID+LL+TH H
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHELDEENAEDFGFDPKSIDLLLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LDH +P L K F G + T AT+ + +++L D + + E
Sbjct: 64 LDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAE 108
>gi|357974294|ref|ZP_09138265.1| beta-lactamase-like protein [Sphingomonas sp. KC8]
Length = 572
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC+ +++ G++IL DCG+ + G +L + + P ID +++TH H
Sbjct: 36 GAAQTVTGSCMEVAHGGRSILVDCGL---FQGSRSLEHLNHQPFRFSPDKIDAVILTHAH 92
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
+DH+ LP L FSG ++ T AT+ + +L D ++ +
Sbjct: 93 IDHSGLLPR-LAADGFSGPIWCTEATRDLLVYMLADAARIQE 133
>gi|296135911|ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
gi|295796033|gb|ADG30823.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
Length = 460
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHFH 85
GA V SC + +GK +L DCG+ + G L + DP +ID+LL+TH H
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHELDEENAEDFGFDPKSIDLLLLTHAH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LDH +P L K F G + T AT+ + +++L D + + E
Sbjct: 64 LDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAE 108
>gi|295107897|emb|CBL21850.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Ruminococcus obeum A2-162]
Length = 539
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLI 81
+ I +GA +EV SC Y+ GK L DCG+ P Y +P + S +D +L+
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGKKFLVDCGMEQGPDYYENQEIP----VKGSDLDFVLL 56
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH+ +LP K F G V+ T AT + ++L D + E
Sbjct: 57 THAHMDHSGNLPAIYAK-GFQGPVYATQATCHLCDIMLRDSAHIQMFEAE 105
>gi|332530295|ref|ZP_08406241.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
gi|332040281|gb|EGI76661.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
Length = 452
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
LGA V S + ++G +L DCG+ Y + L + D DP+ +D +++TH HLD
Sbjct: 6 LGAAGTVTGSRYLLEHEGHRLLVDCGLFQGYKNLRELNWEDFPFDPATLDAVVLTHAHLD 65
Query: 88 HAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+ +LP L + F G + T AT + LLL D
Sbjct: 66 HSGALPLLLRR-GFRGPMHATPATIELCHLLLPD 98
>gi|225572894|ref|ZP_03781649.1| hypothetical protein RUMHYD_01085 [Blautia hydrogenotrophica DSM
10507]
gi|225039759|gb|EEG50005.1| metallo-beta-lactamase domain protein [Blautia hydrogenotrophica
DSM 10507]
Length = 532
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLI 81
+ I +GA +EV SC Y+ GK L DCG+ P Y +P ++ +D LL+
Sbjct: 1 MKITFIGATHEVTGSCYYLEAAGKKFLVDCGMEQGPDYYENVEIP----VNLGEVDFLLL 56
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH+ ++P K F G V+ T AT + ++L D + E
Sbjct: 57 THAHIDHSGNIPAIYAK-GFQGPVYATEATCDLCDIMLRDSAHIQMFEAE 105
>gi|365092630|ref|ZP_09329716.1| beta-lactamase domain-containing protein [Acidovorax sp. NO-1]
gi|363415261|gb|EHL22390.1| beta-lactamase domain-containing protein [Acidovorax sp. NO-1]
Length = 452
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVL 79
+ I LGA V S + + GK +L DCG+ + G+ L + + P ID +
Sbjct: 1 MRITFLGAAGTVTGSKYLLEHGGKRVLVDCGL---FQGLKQLRLRNWDVFPLQPETIDAV 57
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
++TH H+DH+ LP L + FSG VF T AT+ + LLL D + + ED L+
Sbjct: 58 VLTHAHIDHSGYLPA-LARQGFSGSVFCTEATRDLCALLLPDSGHLQE---EDALY 109
>gi|357406777|ref|YP_004918701.1| ribonuclease of the metallo-beta-lactamase superfamily
[Methylomicrobium alcaliphilum 20Z]
gi|351719442|emb|CCE25118.1| putative ribonuclease of the metallo-beta-lactamase superfamily
[Methylomicrobium alcaliphilum 20Z]
Length = 467
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHF 84
LGA +V SC + K IL DCGI + G A + +PS+ID ++++H
Sbjct: 7 LGATGQVTGSCYLLESNAKRILIDCGI---FQGGKAADKQNRSRFPFNPSSIDAVVLSHA 63
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH+ LP L K F G +F+T + + +LLL D + + + D ++ + RS
Sbjct: 64 HLDHSGRLPQ-LYKDGFRGDLFLTEGSVRLVELLLKD---AALLQLRDTEWENKRRQRSG 119
Query: 145 DRI 147
++
Sbjct: 120 KKL 122
>gi|39937209|ref|NP_949485.1| beta-lactamase-like protein [Rhodopseudomonas palustris CGA009]
gi|39651067|emb|CAE29590.1| Beta-lactamase-like [Rhodopseudomonas palustris CGA009]
Length = 542
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
+TI GA V SC KGK L DCG+ + + L Y PS ID +L+T
Sbjct: 3 VTIRFCGAARTVTGSCYLFETKGKRFLVDCGLFQGHKTLKELNYGAFPFRPSEIDAVLLT 62
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H H+DH LP + + F GR+ T T + +L D + + V M+ + ++ R
Sbjct: 63 HAHIDHCGLLPKLV-REGFKGRILATRGTIDLCSYMLPDAGSIQEAEV--MMLNRRNAAR 119
Query: 143 S 143
Sbjct: 120 G 120
>gi|448435791|ref|ZP_21586859.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
gi|445683226|gb|ELZ35626.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
Length = 641
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVILTHAHLDHSALVP-LLFKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|126458658|ref|YP_001054936.1| beta-lactamase domain-containing protein [Pyrobaculum calidifontis
JCM 11548]
gi|126248379|gb|ABO07470.1| beta-lactamase domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 634
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG +T+ LG EVGRS V +S +L DCG+ P
Sbjct: 167 PVVKEG-PITVTFLGGAMEVGRSAVLVSTGESNVLLDCGLKPVQDDEDFPLLDMLDLDRL 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
V+L TH H+DH LP L K + G V+ T TK +LL DYV++ +
Sbjct: 226 DAVVL-THAHMDHVGCLP-LLYKYGYRGPVYATDPTKYQAYILLMDYVELKE 275
>gi|448502560|ref|ZP_21612673.1| beta-lactamase [Halorubrum coriense DSM 10284]
gi|445694055|gb|ELZ46190.1| beta-lactamase [Halorubrum coriense DSM 10284]
Length = 641
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVILTHAHLDHSALVP-LLFKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|319790325|ref|YP_004151958.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
gi|317114827|gb|ADU97317.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
Length = 457
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL-PYFDEIDPSAIDVLLITHFHLDH 88
GA V SC + G L DCG+ + L P F DPS +D ++++H HLDH
Sbjct: 7 GAARVVTGSCHLVEAGGVRFLLDCGLFQGSEELEDLNPKFT-FDPSEVDFVILSHGHLDH 65
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
LPY ++K F+G+++ T T I L+L D +V + V+
Sbjct: 66 CGRLPYLVKK-GFNGKIYATSGTVDIAHLILLDAAQVQEEHVK 107
>gi|146305000|ref|YP_001192316.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145703250|gb|ABP96392.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 642
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
+ LGA EVGRS V + +L D G++P+ + G P D ++ +D +++T
Sbjct: 181 VTALGAFQEVGRSAVLVETPESRVLMDVGVNPSVNFGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K + G V+ T T+ I L+ D + V+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYDGPVYTTQPTRDIMALMQLDLLDVADKEGRPLPYSAKEVRK 299
Query: 143 SM 144
+
Sbjct: 300 EL 301
>gi|261403765|ref|YP_003247989.1| beta-lactamase [Methanocaldococcus vulcanius M7]
gi|261370758|gb|ACX73507.1| beta-lactamase domain protein [Methanocaldococcus vulcanius M7]
Length = 421
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + IL DCG+ P +P ++D +ID ++I+H HLDH
Sbjct: 8 GGCQQIGMSCVEVESQKGKILLDCGLSP---DTGEIP---KVDDKSIDAVIISHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
+LP++ K +++ TH T + + D + + K F E+DI +M +E
Sbjct: 62 GALPFYKFK-----KIYCTHPTADLMFITWRDTLNLKKA------FGEEDIQNAMSSVE 109
>gi|187928791|ref|YP_001899278.1| beta-lactamase domain-containing protein [Ralstonia pickettii 12J]
gi|241114316|ref|YP_002973791.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
gi|309783428|ref|ZP_07678134.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|404397273|ref|ZP_10989064.1| hypothetical protein HMPREF0989_04691 [Ralstonia sp. 5_2_56FAA]
gi|187725681|gb|ACD26846.1| beta-lactamase domain protein [Ralstonia pickettii 12J]
gi|240868889|gb|ACS66547.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
gi|308917827|gb|EFP63518.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|348610414|gb|EGY60107.1| hypothetical protein HMPREF0989_04691 [Ralstonia sp. 5_2_56FAA]
Length = 454
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY----FDEIDPSAIDVLLITHFH 85
GA V S + ++G+ +L DCG+ Y + L + F D ID +++TH H
Sbjct: 7 GAAGTVTGSKYLVEHQGQRLLVDCGLFQGYKQLRLLNWEPLPFSAAD---IDAVVLTHSH 63
Query: 86 LDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-------------SKVSVED 132
LDHA +LP L K F GR+ T +T + LLL D ++ SK +
Sbjct: 64 LDHAGALP-LLVKQGFRGRILATPSTIELCGLLLPDSGRIQEEDAAYANRHHTSKHATAL 122
Query: 133 MLFDEQDINRSMDRIEVCFLSCC 155
L+ E D R+M+++ C
Sbjct: 123 PLYTEDDARRAMEQLHRLPFDQC 145
>gi|297588707|ref|ZP_06947350.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
gi|297574080|gb|EFH92801.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
Length = 539
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY--FDEIDPSAIDVLLI 81
+ I LGA EV SC + + + DCG+ + G L D+ID + ++ +L+
Sbjct: 1 MKITFLGAAQEVTGSCYLVETEKHKFMVDCGL---FQGSKELEQKNHDDIDFNEVEFMLL 57
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH +P L K F ++ T ATK + +++L D K+ + VE
Sbjct: 58 THAHIDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE 106
>gi|448529176|ref|ZP_21620435.1| beta-lactamase [Halorubrum hochstenium ATCC 700873]
gi|445709609|gb|ELZ61435.1| beta-lactamase [Halorubrum hochstenium ATCC 700873]
Length = 641
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVILTHAHLDHSALVP-LLFKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|317470615|ref|ZP_07930001.1| metallo-beta-lactamase superfamily protein [Anaerostipes sp.
3_2_56FAA]
gi|316901906|gb|EFV23834.1| metallo-beta-lactamase superfamily protein [Anaerostipes sp.
3_2_56FAA]
Length = 535
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFDEIDPSAIDVLLI 81
+ ++ +GA +EV SC Y+ GK L D G+ + A LP ++PS ID +L+
Sbjct: 3 MKLMFIGADHEVTGSCHYVEACGKRFLVDYGMEQGKNVYENAELP----VNPSEIDFVLL 58
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH+ LP L F G V T ATK + ++L D + + E
Sbjct: 59 THAHIDHSGLLP-LLYANGFRGSVIATKATKDLCDIMLRDSAHIQEFEAE 107
>gi|240144183|ref|ZP_04742784.1| metallo-beta-lactamase family protein [Roseburia intestinalis
L1-82]
gi|257203787|gb|EEV02072.1| metallo-beta-lactamase family protein [Roseburia intestinalis
L1-82]
gi|291536438|emb|CBL09550.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia intestinalis M50/1]
gi|291538694|emb|CBL11805.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Roseburia intestinalis XB6B4]
Length = 536
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA +EV SC Y+S+ K IL DCG+ P +P ++ + ID + +TH H+
Sbjct: 6 LGAAHEVTGSCHYLSFGDKHILVDCGMEQGPDLYTNQEIP----VNAAMIDYVFVTHAHI 61
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDR 146
DH+ LP L F G+++ T AT + ++L D + +F+ + NR R
Sbjct: 62 DHSGLLP-LLYNHGFRGKIYCTLATNELCNIMLKDSAHIQ-------MFEAEWRNRKAKR 113
>gi|374636870|ref|ZP_09708413.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557613|gb|EHP84014.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 419
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 18/120 (15%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SC+ + K IL DCG+ P + A+P DE +D ++++H HLDH
Sbjct: 8 GGCHQIGMSCIEIDTKKSKILLDCGMDPTNN---AIPKVDE----NVDAVVVSHAHLDHC 60
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
++P++ + +++ T T + + D + +SK + E+DI RS++ EV
Sbjct: 61 GAIPFYKFR-----KIYCTTPTADLMYITWKDTLNLSKS------YKEEDIQRSLNNTEV 109
>gi|182414994|ref|YP_001820060.1| beta-lactamase domain-containing protein [Opitutus terrae PB90-1]
gi|177842208|gb|ACB76460.1| beta-lactamase domain protein [Opitutus terrae PB90-1]
Length = 452
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ +I L +G + + + + +L DCG+HP G AA P + + +D++LITH
Sbjct: 1 MKLIDLNRDGGIGANSLLVQFGDLRVLVDCGLHPKKVGRAATPDLTLLRGTPLDLILITH 60
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV--SKVSVEDM----LFDE 137
HLDH SLP + + + V MT A++ + + +L + V + E++ LF
Sbjct: 61 CHLDHIGSLPVVMREHPNTP-VLMTAASRMLIERMLHNSANVMMRQRETENIPDYPLFTH 119
Query: 138 QDINRSMDR 146
++I R + R
Sbjct: 120 EEIERCVGR 128
>gi|448737127|ref|ZP_21719179.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
gi|445804340|gb|EMA54597.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
Length = 636
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDQWVRITTLGCCREVGRASFILSTPETRILIDCGDKP-- 215
Query: 60 SGMAALPYFD--EIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYK 116
G PY E +P ++ID +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 216 -GSDDAPYLQVPEANPLNSIDAVVLTHAHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMG 273
Query: 117 LLLTDYVKVS 126
LL DY+ V+
Sbjct: 274 LLQLDYLDVA 283
>gi|448473369|ref|ZP_21601511.1| beta-lactamase [Halorubrum aidingense JCM 13560]
gi|445818881|gb|EMA68730.1| beta-lactamase [Halorubrum aidingense JCM 13560]
Length = 641
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEIDP-----SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + ID +++TH HLDH+A LP L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATIDAVILTHAHLDHSALLP-LLFKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|298674377|ref|YP_003726127.1| KH-domain/beta-lactamase-domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287365|gb|ADI73331.1| KH-domain/beta-lactamase-domain protein [Methanohalobium
evestigatum Z-7303]
Length = 638
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDP-SAIDVLLITH 83
I LG EVGRSC +S ++ DCG++ + M Y E P S +D +++TH
Sbjct: 183 ITSLGGCKEVGRSCFILSTPESRVMIDCGVNIGSDENMTPYLYVPEAYPLSQLDAVILTH 242
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
HLDH+ +P L K + G V+ T T+ + LL DY+ V+
Sbjct: 243 AHLDHSGFIP-LLYKYGYQGPVYCTLPTRDLSALLQLDYIDVA 284
>gi|448479273|ref|ZP_21604125.1| beta-lactamase [Halorubrum arcis JCM 13916]
gi|445822551|gb|EMA72315.1| beta-lactamase [Halorubrum arcis JCM 13916]
Length = 641
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 11 KRRDVPVSREGDQL-----------TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+RRD+ + R G Q+ I LG EVGR+ +S IL DCG P
Sbjct: 159 ERRDI-LERVGRQIHREEMSDDEWVRITTLGCCREVGRAAFILSTPETRILIDCGDKPGA 217
Query: 60 SGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114
G +PY + + +D +++TH HLDH+A +P L K + G ++ T T+ +
Sbjct: 218 EG--EVPYLQVPEALGAGAATLDAVVLTHAHLDHSALVP-LLFKYGYDGPIYTTEPTRDL 274
Query: 115 YKLLLTDYVKVS 126
LL DY+ V+
Sbjct: 275 MGLLTLDYLDVA 286
>gi|395645476|ref|ZP_10433336.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
gi|395442216|gb|EJG06973.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
Length = 629
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
+ LG EVGR+ ++ +L DCG P + Y EI P S++D +++TH
Sbjct: 181 VTTLGCCREVGRAAFLLTTPESRVLIDCGEKPGSTTSTPYLYVPEISPLSSLDAVVLTHA 240
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
HLDH A +P L K + G V+ T T+ + +L DY+ V K
Sbjct: 241 HLDHCALVP-LLFKYGYDGPVYSTPPTRDLAAMLQLDYLDVVK 282
>gi|167748552|ref|ZP_02420679.1| hypothetical protein ANACAC_03324 [Anaerostipes caccae DSM 14662]
gi|167652025|gb|EDR96154.1| metallo-beta-lactamase domain protein [Anaerostipes caccae DSM
14662]
Length = 535
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFDEIDPSAIDVLLI 81
+ ++ +GA +EV SC Y+ GK L D G+ + A LP ++PS ID +L+
Sbjct: 3 MKLMFIGADHEVTGSCHYVEACGKRFLVDYGMEQGKNVYENAELP----VNPSEIDFVLL 58
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
TH H+DH+ LP L F G V T ATK + ++L D + + E
Sbjct: 59 THAHIDHSGLLP-LLYANGFRGSVIATKATKDLCDIMLRDSAHIQEFEAE 107
>gi|441516633|ref|ZP_20998381.1| putative ribonuclease [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456686|dbj|GAC56342.1| putative ribonuclease [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 463
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVL 79
LT+ LG V S + G+T+L DCG+ + G+ L + I +ID +
Sbjct: 4 LTLTSLGGAGTVTGSKHLLQGGGRTVLVDCGL---FQGIKNLREANWRPLPIAADSIDAV 60
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
++TH HLDH LP + + F+GR++ T AT+A+ +++L D + +
Sbjct: 61 IVTHGHLDHVGYLPRLV-REGFTGRIYATPATRAVAEIILRDSAHIQQ 107
>gi|448302982|ref|ZP_21492932.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445593989|gb|ELY48156.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 645
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRITTLGCCREVGRASFIISTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|148980244|ref|ZP_01815952.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Vibrionales bacterium SWAT-3]
gi|145961338|gb|EDK26647.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Vibrionales bacterium SWAT-3]
Length = 446
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ +I G + V SC + G+++L DCG+ + G A P + + S ++ LL+TH
Sbjct: 1 MEVIHHGGKHTVTGSCHELRDSGQSVLIDCGL---FQGSDARPLDIDFETSHLNALLLTH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
H+DH LP+ L T F+ ++ T AT + L++ D +K+ +S
Sbjct: 58 THIDHIGRLPWLL-ATGFNQPIYCTQATAELAPLMIEDGLKLQGLS 102
>gi|289580012|ref|YP_003478478.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
gi|448281251|ref|ZP_21472558.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
gi|289529565|gb|ADD03916.1| KH-domain/beta-lactamase-domain protein [Natrialba magadii ATCC
43099]
gi|445579181|gb|ELY33577.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
Length = 644
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVA 286
>gi|442611779|ref|ZP_21026482.1| Metallo-beta-lactamase family protein,RNA-specific
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441746524|emb|CCQ12544.1| Metallo-beta-lactamase family protein,RNA-specific
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 466
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 30 GAGNEVGRSC-VYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
GA +V SC + S IL DCGI + +P AID ++++H HLDH
Sbjct: 8 GAAQQVTGSCHLIESPAVGKILLDCGIEQGGDDRELYEKQFDFNPQAIDAVILSHAHLDH 67
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV 125
+ LP + + F G ++ THATKA+ ++LL D V +
Sbjct: 68 SGMLPKLV-RQGFHGIIYCTHATKALLEILLKDAVSI 103
>gi|312880691|ref|ZP_07740491.1| RNA-metabolising metallo-beta-lactamase [Aminomonas paucivorans DSM
12260]
gi|310783982|gb|EFQ24380.1| RNA-metabolising metallo-beta-lactamase [Aminomonas paucivorans DSM
12260]
Length = 536
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 23/138 (16%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA----LPYFDEIDPSAIDVLLITHF 84
LGA EV S + + IL DCG+H A PY +P ++D +L+TH
Sbjct: 6 LGAAGEVTGSNYLLETENSRILVDCGLHQGRDEEAQNRDEFPY----NPGSVDAVLLTHA 61
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
H+DH+ LP L K F GR++ T AT ++L D + + E
Sbjct: 62 HMDHSGLLP-LLAKRGFKGRIWATTATVEFCEVLWRDSAHLMEEEAEWKTRKNARKGLPP 120
Query: 132 -DMLFDEQDINRSMDRIE 148
+ L+D +D+ R++ ++
Sbjct: 121 VEPLYDLEDVERAISLLQ 138
>gi|15668217|ref|NP_247010.1| putative mRNA 3'-end processing factor 1 [Methanocaldococcus
jannaschii DSM 2661]
gi|3915921|sp|Q60355.2|Y047_METJA RecName: Full=Uncharacterized protein MJ0047
gi|2826239|gb|AAB98027.1| putative mRNA 3'-end processing factor 1 [Methanocaldococcus
jannaschii DSM 2661]
Length = 428
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ II GA EVGRSC+ + IL DCG+ P D +D + I+H
Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP + V T +K + K+LL D VK+++ + + ++ D+ +
Sbjct: 58 AHLDHSGALPVLFHR-KMDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEA 116
Query: 144 M 144
+
Sbjct: 117 I 117
>gi|373469892|ref|ZP_09561050.1| metallo-beta-lactamase domain protein [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
gi|371763509|gb|EHO51980.1| metallo-beta-lactamase domain protein [Lachnospiraceae bacterium
oral taxon 082 str. F0431]
Length = 382
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI--------HPAYSGMAALPYFDEIDPSA 75
+ IPLG G VG SC Y+ I+ D GI P + + P+ + +
Sbjct: 5 IIFIPLGGGQRVGASCYYLKVGDANIILDAGIGIDDGLEFGPDFQFLIRTPFIQSM--TQ 62
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
I+ + I+H H+DH L + +T+++G V+MT TK + + L D + + K S E+
Sbjct: 63 INNIFISHAHMDHVGYLLKLMNQTSYAG-VYMTEITKVLSEYQLYDRLFIGKSSDEN 118
>gi|110636203|ref|YP_676411.1| beta-lactamase-like protein [Chelativorans sp. BNC1]
gi|110287187|gb|ABG65246.1| beta-lactamase-like protein [Chelativorans sp. BNC1]
Length = 452
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
LT+ LG V S ++ + IL DCG+ + L + + PS+ID +++T
Sbjct: 2 LTLTSLGGAGTVTGSKHLLTNGDRRILIDCGLFQGLKNLRELNWEPLPVAPSSIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H HLDH+ LP + + F GR++ T AT+ + +L+L D
Sbjct: 62 HAHLDHSGYLPKLV-RDGFKGRIYATAATRDVAELILKD 99
>gi|448361792|ref|ZP_21550405.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445649472|gb|ELZ02409.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 644
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSM 144
+ ++
Sbjct: 299 RVREAI 304
>gi|41614872|ref|NP_963370.1| hypothetical protein NEQ076 [Nanoarchaeum equitans Kin4-M]
gi|40068596|gb|AAR38931.1| NEQ076 [Nanoarchaeum equitans Kin4-M]
Length = 635
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH----PAYSGMAALPYFDEIDPSAIDVLLITHF 84
LG ++VGRS + + K IL D G+ P + E D +D ++ITH
Sbjct: 194 LGGASQVGRSALLLQTKESRILLDFGVDLSLPPNNKNAYPIVELPEFDVKELDAVVITHA 253
Query: 85 HLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
HLDH +P FL K + G V++T T I L L DY++++
Sbjct: 254 HLDHVGFVP-FLYKMGYKGPVYLTPPTLDIATLSLLDYLRIA 294
>gi|307610917|emb|CBX00534.1| metallo-beta lactamase family [Legionella pneumophila 130b]
Length = 453
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-----GMAALPYFDEIDPSAIDVLLITH 83
LGA V S ++ K IL DCG+ Y A LP ++P ID ++ITH
Sbjct: 6 LGATETVTGSKYLLTVDSKKILIDCGLFQGYKELRLRNWAPLP----VNPRDIDAVIITH 61
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTD 121
H+DH LP + K F G+++ T TKA+ +LL D
Sbjct: 62 AHIDHTGYLPLLI-KNGFQGKIYATTGTKALCSILLPD 98
>gi|448348697|ref|ZP_21537545.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445642358|gb|ELY95426.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 644
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDV 78
+ I LG EVGR+ +S IL DCG P G +PY + P ID
Sbjct: 182 VRISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS 126
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 240 VVLTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVA 286
>gi|269986876|gb|EEZ93153.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 629
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I LGA VGRS V + +IL D G+ + + +P D E D S + ++ITH
Sbjct: 178 ISALGAFRHVGRSAVLVQTPISSILLDAGVDVS-NPKEPVPRVDAPEFDISKLAAVVITH 236
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP L K ++G V+ T T+ + LL DY+ ++ + +LFD D+ +
Sbjct: 237 SHLDHCGFLPA-LYKYGYNGPVYSTAPTRDVMTLLHLDYINLASRTNSKLLFDVDDVKKM 295
Query: 144 M 144
+
Sbjct: 296 L 296
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,439,291,185
Number of Sequences: 23463169
Number of extensions: 96381863
Number of successful extensions: 293058
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 4545
Number of HSP's that attempted gapping in prelim test: 287149
Number of HSP's gapped (non-prelim): 6032
length of query: 157
length of database: 8,064,228,071
effective HSP length: 119
effective length of query: 38
effective length of database: 9,567,078,256
effective search space: 363548973728
effective search space used: 363548973728
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)