BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031588
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 272 bits (696), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 128/149 (85%), Positives = 141/149 (94%), Gaps = 2/149 (1%)
Query: 1 MASTGQPPSLKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS+ SLKRR+ P+SR+GDQL + PLGAG+EVGRSCVYMS++GK ILFDCGIHPAYS
Sbjct: 1 MASSST--SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYS 58
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF+GRVFMTHATKAIYKLLLT
Sbjct: 59 GMAALPYFDEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLT 118
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDRIEV 149
DYVKVSKVSVEDMLFDEQDIN+SMD+IEV
Sbjct: 119 DYVKVSKVSVEDMLFDEQDINKSMDKIEV 147
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 192 bits (489), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 84/131 (64%), Positives = 104/131 (79%)
Query: 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDRIE 148
D+ SMD+IE
Sbjct: 126 TDLEESMDKIE 136
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
Query: 13 RDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
D PV D L I LGAGNEVGRSC + YKGKT++ D G+HPAY+G++ALP+FDE D
Sbjct: 9 EDAPVD-PSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFD 67
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED
Sbjct: 68 LSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMED 127
Query: 133 MLFDEQDINRSMDRIEVC 150
L+DE+D+ + DRIE
Sbjct: 128 QLYDEKDLLAAFDRIEAV 145
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
Query: 10 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L I P+G+G+EVGRSCV + YKGK ++FDCG+HPAYSG+ +LP+FD
Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81
Query: 70 EI--DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK 127
I D ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS
Sbjct: 82 SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141
Query: 128 VSV-EDMLFDEQDINRSMDRIE 148
++ +DMLFD+ D++RS+++IE
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIE 163
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 97/134 (72%), Gaps = 7/134 (5%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L LG NEVGRSC + YKGKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI
Sbjct: 12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLI 71
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDML 134
+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + S D L
Sbjct: 72 SHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNL 131
Query: 135 FDEQDINRSMDRIE 148
+ ++D+ S DRIE
Sbjct: 132 YSDEDLAESFDRIE 145
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 99/138 (71%), Gaps = 6/138 (4%)
Query: 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V +Q LG GNEVGRSC + +KGKTI+ D GIHPAY GMA+LP++D+ D S +
Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIV 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SV 130
DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + +
Sbjct: 63 DVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAE 122
Query: 131 EDMLFDEQDINRSMDRIE 148
+D L+ +D+ S D+IE
Sbjct: 123 DDNLYSNEDLIESFDKIE 140
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ D + + LG G EVGRSC +S+KGKTI+ D G+HPA+SG+A+LP++DE D S ID+L
Sbjct: 33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDIL 92
Query: 80 LITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQ 138
LI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+ + D L+ E
Sbjct: 93 LISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEA 152
Query: 139 DINRSMDRIE 148
D+ S ++IE
Sbjct: 153 DLTASFNKIE 162
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/132 (55%), Positives = 99/132 (75%), Gaps = 3/132 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQLTI LGAG EVGRSC + Y+GKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFS---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDRIEVC 150
++ S +IE
Sbjct: 142 EMLASWRQIEAV 153
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 96/130 (73%), Gaps = 8/130 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDRIEVC 150
S D+IE
Sbjct: 134 VDSFDKIETV 143
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 96/129 (74%), Gaps = 7/129 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-------LFDEQDIN 141
AASLPY +++T F GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLA 135
Query: 142 RSMDRIEVC 150
S DRIE
Sbjct: 136 ESFDRIETV 144
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 75/132 (56%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
Query: 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDRIEV 149
+D ++ IE
Sbjct: 141 EDHLKTFPMIEA 152
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 92/131 (70%), Gaps = 3/131 (2%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDRIEV 149
D + +IE
Sbjct: 143 DHLNTFPQIEA 153
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 83/108 (76%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+VS +
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTA 130
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
Query: 14 DVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS 129
S +D+LLI+HFH+DH+++LPY L KT F GRVFMTHATKAIYK L+ D V+V+ +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTA 129
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 16/144 (11%)
Query: 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D LG NEVGRSC + YK K I+ D G+HP G+++LP++DE D S +D+LL+
Sbjct: 12 DDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLSKVDILLV 71
Query: 82 THFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------------- 128
+HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LL+D+VKV+ +
Sbjct: 72 SHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDP 131
Query: 129 ---SVEDMLFDEQDINRSMDRIEV 149
+ L+ + D+ RS DRIE
Sbjct: 132 NANTGSSNLYTDDDLMRSFDRIET 155
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 92/130 (70%), Gaps = 10/130 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDRIE 148
DI +S DRIE
Sbjct: 225 DIMKSFDRIE 234
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 5/134 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + LTI LGAG EVGRSC + ++GK I+ D G+HPA G+ ALP+ DE+D S
Sbjct: 21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST 80
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVS--V 130
+D +LITHFH+DHAA+LPY +EKT F +G+V+MTHATKAIY L + D V+++ +
Sbjct: 81 VDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDT 140
Query: 131 EDMLFDEQDINRSM 144
L+DE D+ S
Sbjct: 141 SGRLYDEADVQSSW 154
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 5/134 (3%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + LTI LGAG EVGRSC + ++GK I+ D G+HPA G+ ALP+ DE+D S
Sbjct: 21 PPDEDAPSLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST 80
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVS--V 130
+D +LITHFH+DHAA+LPY +EKT F +G+V+MTHATKAIY L + D V+++ +
Sbjct: 81 VDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNPDT 140
Query: 131 EDMLFDEQDINRSM 144
L+DE D+ S
Sbjct: 141 SGRLYDEADVQSSW 154
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ ++PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID
Sbjct: 3 IKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDC 62
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F
Sbjct: 63 VIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTA 122
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 123 QMIKDCMKKV 132
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
+ + PLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDE 137
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 138 QDINRSMDRI 147
Q I M ++
Sbjct: 124 QMIKDCMKKV 133
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDRI 147
Q I M ++
Sbjct: 123 SQMIKDCMKKV 133
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FH+DH +LPYF E ++G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDRI 147
M ++
Sbjct: 128 CMKKV 132
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D +++TH HL
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLDAVIVTHAHL 243
Query: 87 DHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
DH +P + + G V+ T T+ + LL DY++++K +++ + +DI
Sbjct: 244 DHCGFIPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTSKDIK 297
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ I+P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP + + G V+ T AT + +++L D +KV +++ F +D+ +
Sbjct: 60 AHLDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEA 114
Query: 144 MDRI 147
+ +
Sbjct: 115 LGHL 118
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ II GA EVGRSC+ + IL DCG+ P D +D + I+H
Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISH 57
Query: 84 FHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP + V T +K + K+LL D VK+++ + + ++ D+ +
Sbjct: 58 AHLDHSGALPVLFHR-KMDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEA 116
Query: 144 M 144
+
Sbjct: 117 I 117
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + +L DCG+ P +P ++D A+D ++++H HLDH
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKAVDAVIVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIE 148
++P++ K +++ TH T + + D + ++K + E+DI +M+ IE
Sbjct: 62 GAIPFYKFK-----KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQHAMENIE 109
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 36/150 (24%)
Query: 39 CVYMSYKGKTILFDCGIH---------------------PAYS---GMAALPYFDEIDPS 74
C + +K TI+ DCG+ P +S G A L + ID S
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSSLPGWSLKDGNAFLDKTELIDLS 73
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV----KVSKVSV 130
+DV+LI+++H A LPY E T F+G V+ T T I +LL+ + V +V K
Sbjct: 74 TVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQS 131
Query: 131 EDMLFDEQDINRSM-----DRIEVCFLSCC 155
L+ +DI R + D +EV C
Sbjct: 132 AS-LWKNKDIQRLLPSPLKDAVEVSTWRRC 160
>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=Cgl1970 PE=3 SV=2
Length = 718
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 11 KRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA----LP 66
+R P + L I LG +E+GR+ Y + ++ DCG+ SG LP
Sbjct: 142 QRLPEPPKAPANGLRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILP 201
Query: 67 YFDEIDP--SAIDVLLITHFHLDHAASLPYFLE 97
F I+ +D L++TH H DH ++P+ L+
Sbjct: 202 DFGPIEDHLHRVDALVVTHGHEDHIGAIPWLLK 234
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV- 123
LP + ID S +DV+LI+++H A LPY E T F+G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTMQIGRLLMEELVN 142
Query: 124 ---KVSKVSVEDMLFDEQDINRSM-----DRIEVCFLSCC 155
+V K L+ +DI R + D +EV C
Sbjct: 143 FIERVPKAQSAS-LWKNKDIQRLLPSPLKDAVEVSTWRRC 181
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV- 123
LP + ID S +DV+LI+++H A LPY E T F+G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 124 ---KVSKVSVEDMLFDEQDINRSM-----DRIEVCFLSCC 155
+V K L+ +DI R + D +EV C
Sbjct: 143 FIERVPKAQSAS-LWKNKDIQRLLPSPLKDAVEVSTWRRC 181
>sp|Q0TQN4|RNZ_CLOP1 Ribonuclease Z OS=Clostridium perfringens (strain ATCC 13124 / NCTC
8237 / Type A) GN=rnz PE=3 SV=1
Length = 316
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 24 LTIIPLGAGNEVGR-----SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
L +I LG G + S V M++KG+ IL DCG G + +ID+
Sbjct: 2 LNVILLGTGGGMPMPNRFLSSVVMNFKGRKILLDCG-----EGTQVTMRVNGTGFKSIDI 56
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGRV 105
+ I+H H DH LP L SGRV
Sbjct: 57 ICISHLHGDHIYGLPGLLSTIGNSGRV 83
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYV- 123
LP + ID S +DV+LI+++H A LPY E T F+G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 124 ---KVSKVSVEDMLFDEQDINRSM-----DRIEVCFLSCC 155
+V K L+ +DI R + D +EV C
Sbjct: 143 FIERVPKAQSAS-LWKNKDIQRLLPSPLKDAVEVSTWRRC 181
>sp|A6UUY8|RNZ_META3 Ribonuclease Z OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnz PE=3 SV=1
Length = 322
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 24 LTIIPLGAGNEV-----GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+ II LG G + S V + Y G+ LFDCG G + +I P I+
Sbjct: 1 MKIIFLGTGAAIPTKHRNHSSVGIKYDGEVFLFDCG-----EGTQRQMIYTDISPMKINN 55
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGR 104
+ I+H H DH L L+ F+GR
Sbjct: 56 IFISHLHGDHILGLAGLLQSIGFNGR 81
>sp|Q58897|RNZ_METJA Ribonuclease Z OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rnz
PE=1 SV=2
Length = 317
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 24 LTIIPLGAGNEV---GRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+ +I LG G V R+ + +++K G+ LFDCG + F E+ P I+
Sbjct: 4 MKLIFLGTGAAVPSKNRNHIGIAFKFGGEVFLFDCG-----ENIQRQMLFTEVSPMKINH 58
Query: 79 LLITHFHLDHAASLPYFLEKTTFSGR-----VFMTHATKAI 114
+ ITH H DH +P L+ F GR +F TK I
Sbjct: 59 IFITHLHGDHILGIPGLLQSMGFFGREKELKIFGPEGTKEI 99
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL---LTD 121
LP + ID S +DV+LI+++H A LPY E+T F+G V+ T T I +LL L +
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITERTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 122 YVKVSKVSVEDMLFDEQDINRSM-----DRIEVCFLSCC 155
+++ + ++ +D+ R + D +EV C
Sbjct: 143 FIERVPKAQSATVWKHKDVQRLLPAPLKDAVEVFTWKKC 181
>sp|Q892B5|RNZ_CLOTE Ribonuclease Z OS=Clostridium tetani (strain Massachusetts / E88)
GN=rnz PE=3 SV=2
Length = 312
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 24 LTIIPLGAG---NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
+T++ G G E S ++YKG+ IL DCG S + F ID ++
Sbjct: 4 ITLLGTGGGMPTPERNLSAAILNYKGRKILIDCGEGTQVSMKISKTGFKNID-----IIC 58
Query: 81 ITHFHLDHAASLPYFLEKTTFSGR 104
ITH+H DH LP L SGR
Sbjct: 59 ITHWHGDHIVGLPGLLATMGNSGR 82
>sp|Q0ST77|RNZ_CLOPS Ribonuclease Z OS=Clostridium perfringens (strain SM101 / Type A)
GN=rnz PE=3 SV=1
Length = 316
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 38 SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97
S V M++KG+ IL DCG G + +ID++ I+H H DH LP L
Sbjct: 21 SSVVMNFKGRKILLDCG-----EGTQVSMRVNGTGFKSIDIICISHLHGDHIYGLPGLLS 75
Query: 98 KTTFSGRV 105
SGRV
Sbjct: 76 TIGNSGRV 83
>sp|A5MZX7|RNZ_CLOK5 Ribonuclease Z OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555
/ NCIMB 10680) GN=rnz PE=3 SV=1
Length = 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 38 SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97
+ + +SY+G+ +L DCG S + L + IDV+L THFH DH A LP L
Sbjct: 21 TAMIVSYQGRKLLIDCGEGTQVS-LKILGW----KIRNIDVILFTHFHADHIAGLPGLLL 75
Query: 98 KTTFSGRV 105
SGR+
Sbjct: 76 TIANSGRL 83
>sp|B9E3V3|RNZ_CLOK1 Ribonuclease Z OS=Clostridium kluyveri (strain NBRC 12016) GN=rnz
PE=3 SV=1
Length = 303
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 38 SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97
+ + +SY+G+ +L DCG S + L + IDV+L THFH DH A LP L
Sbjct: 21 TAMIVSYQGRKLLIDCGEGTQVS-LKILGW----KIRNIDVILFTHFHADHIAGLPGLLL 75
Query: 98 KTTFSGRV 105
SGR+
Sbjct: 76 TIANSGRL 83
>sp|Q6LYT2|RNZ_METMP Ribonuclease Z OS=Methanococcus maripaludis (strain S2 / LL) GN=rnz
PE=3 SV=1
Length = 308
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 39 CVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98
+ + + G+ LFDCG + + F ++ P I+ + ITH H DH LP L+
Sbjct: 21 SISLKFDGEIFLFDCGENTQRQII-----FTDVSPMKINNIFITHLHGDHVLGLPGLLQS 75
Query: 99 TTFSGR 104
F GR
Sbjct: 76 IAFQGR 81
>sp|Q8XKN1|RNZ_CLOPE Ribonuclease Z OS=Clostridium perfringens (strain 13 / Type A)
GN=rnz PE=3 SV=1
Length = 316
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 38 SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97
S V M++ G+ IL DCG G + +ID++ I+H H DH LP L
Sbjct: 21 SSVVMNFNGRKILLDCG-----EGTQVSMRVNGTGFKSIDIICISHLHGDHIYGLPGLLS 75
Query: 98 KTTFSGRV 105
SGRV
Sbjct: 76 TIGNSGRV 83
>sp|O33294|Y2752_MYCTU Putative ribonuclease J Rv2752c OS=Mycobacterium tuberculosis
GN=Rv2752c PE=1 SV=1
Length = 558
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query: 16 PVSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGI-HPAYSGMAALPYFDEIDPS 74
P++ G L + LG NE+GR+ + G+ ++ DCG+ P + P D I P
Sbjct: 10 PLTSGG--LRVTALGGINEIGRNMTVFEHLGRLLIIDCGVLFPGHDE----PGVDLILPD 63
Query: 75 A---------IDVLLITHFHLDHAASLPYFLE 97
I+ L++TH H DH ++P+ L+
Sbjct: 64 MRHVEDRLDDIEALVLTHGHEDHIGAIPFLLK 95
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 66 PYFDEIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVK 124
P F+ ID S ID++LI+++ + +LP+ E T F G+++ T T I KLLL + V+
Sbjct: 106 PQFEMIDDFSTIDMILISNY--TNIYALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQ 163
Query: 125 VSK 127
+ K
Sbjct: 164 MDK 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,373,628
Number of Sequences: 539616
Number of extensions: 2335838
Number of successful extensions: 7538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 7242
Number of HSP's gapped (non-prelim): 317
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)