Query 031588
Match_columns 157
No_of_seqs 165 out of 1453
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1782 Predicted metal-depend 99.9 3E-22 6.5E-27 160.5 13.2 137 18-155 175-313 (637)
2 TIGR03675 arCOG00543 arCOG0054 99.9 1.2E-21 2.6E-26 165.0 15.0 138 17-155 168-307 (630)
3 KOG1136 Predicted cleavage and 99.9 4.9E-21 1.1E-25 147.4 11.8 135 22-156 2-142 (501)
4 KOG1137 mRNA cleavage and poly 99.8 1.7E-21 3.6E-26 157.2 6.8 136 20-155 10-145 (668)
5 COG1236 YSH1 Predicted exonucl 99.8 2.4E-18 5.2E-23 139.7 13.2 128 24-156 1-128 (427)
6 KOG1135 mRNA cleavage and poly 99.7 7.5E-17 1.6E-21 133.2 11.9 131 24-156 2-132 (764)
7 PRK00055 ribonuclease Z; Revie 99.7 1.3E-16 2.9E-21 121.7 6.0 92 23-119 1-102 (270)
8 TIGR00649 MG423 conserved hypo 99.6 2.6E-15 5.7E-20 122.0 10.8 95 24-119 1-101 (422)
9 TIGR02651 RNase_Z ribonuclease 99.6 3.8E-15 8.3E-20 115.7 5.3 90 25-119 1-100 (299)
10 COG0595 mRNA degradation ribon 99.6 3E-14 6.5E-19 118.2 10.3 100 20-120 5-110 (555)
11 TIGR02649 true_RNase_BN ribonu 99.5 1.4E-14 3E-19 113.0 5.8 89 26-119 1-103 (303)
12 PRK05184 pyrroloquinoline quin 99.5 2.8E-14 6.1E-19 111.3 6.7 78 37-117 39-120 (302)
13 PRK02113 putative hydrolase; P 99.5 5E-14 1.1E-18 107.0 7.9 87 24-117 1-109 (252)
14 COG1234 ElaC Metal-dependent h 99.5 2.2E-14 4.8E-19 111.4 5.6 93 23-120 1-103 (292)
15 PRK11244 phnP carbon-phosphoru 99.5 9.8E-14 2.1E-18 105.4 8.4 80 24-112 1-103 (250)
16 TIGR02108 PQQ_syn_pqqB coenzym 99.5 7.4E-14 1.6E-18 108.9 6.0 78 37-117 38-119 (302)
17 COG1237 Metal-dependent hydrol 99.4 1.5E-13 3.2E-18 103.2 5.2 75 37-113 22-96 (259)
18 smart00849 Lactamase_B Metallo 99.4 4.5E-13 9.7E-18 95.9 4.4 78 35-117 4-81 (183)
19 PF00753 Lactamase_B: Metallo- 99.4 1.4E-13 2.9E-18 98.5 1.5 76 36-113 5-80 (194)
20 PRK02126 ribonuclease Z; Provi 99.3 5.4E-12 1.2E-16 99.7 8.8 87 23-120 4-95 (334)
21 PRK00685 metal-dependent hydro 99.3 1.2E-11 2.5E-16 92.5 9.5 79 24-116 1-79 (228)
22 PRK04286 hypothetical protein; 99.3 7.3E-12 1.6E-16 97.6 5.5 72 24-95 1-85 (298)
23 TIGR03307 PhnP phosphonate met 99.2 4.8E-11 1E-15 90.0 7.7 69 35-112 25-93 (238)
24 PRK11921 metallo-beta-lactamas 99.2 1.8E-11 4E-16 98.8 5.8 77 36-116 32-109 (394)
25 PLN02469 hydroxyacylglutathion 99.2 2.8E-11 6.1E-16 92.5 4.4 78 24-110 1-80 (258)
26 PRK05452 anaerobic nitric oxid 99.1 5.1E-11 1.1E-15 98.4 5.4 77 36-116 34-111 (479)
27 TIGR03413 GSH_gloB hydroxyacyl 99.1 4.2E-11 9.1E-16 91.1 3.4 67 37-111 10-77 (248)
28 PRK10241 hydroxyacylglutathion 99.1 7.8E-11 1.7E-15 89.8 4.0 79 24-111 1-80 (251)
29 PLN02398 hydroxyacylglutathion 99.1 2.5E-10 5.5E-15 89.8 5.6 81 23-113 75-157 (329)
30 PLN02962 hydroxyacylglutathion 99.0 3.2E-10 7E-15 86.3 5.2 82 22-109 9-94 (251)
31 PRK11539 ComEC family competen 99.0 3.9E-10 8.3E-15 97.8 6.3 84 21-109 498-584 (755)
32 TIGR00361 ComEC_Rec2 DNA inter 99.0 5.9E-10 1.3E-14 95.4 6.5 84 22-110 438-524 (662)
33 COG1235 PhnP Metal-dependent h 99.0 3.7E-10 7.9E-15 86.8 4.0 79 22-109 2-94 (269)
34 COG2333 ComEC Predicted hydrol 99.0 2.1E-09 4.6E-14 83.3 7.4 81 24-110 44-124 (293)
35 COG0491 GloB Zn-dependent hydr 98.9 1.7E-09 3.6E-14 80.7 5.1 86 24-113 12-99 (252)
36 KOG1138 Predicted cleavage and 98.9 3.9E-09 8.4E-14 85.7 7.4 83 72-156 93-204 (653)
37 KOG2121 Predicted metal-depend 98.9 4.4E-10 9.6E-15 94.4 1.1 105 14-118 433-552 (746)
38 PF12706 Lactamase_B_2: Beta-l 98.9 8E-10 1.7E-14 80.1 1.6 69 48-117 2-72 (194)
39 COG0426 FpaA Uncharacterized f 98.9 2E-09 4.3E-14 85.8 3.9 87 33-123 32-119 (388)
40 COG2220 Predicted Zn-dependent 98.8 8.1E-08 1.8E-12 73.3 9.9 85 20-111 3-88 (258)
41 PRK11709 putative L-ascorbate 98.7 7.1E-08 1.5E-12 76.9 9.5 91 21-117 35-153 (355)
42 PF13483 Lactamase_B_3: Beta-l 98.7 6E-08 1.3E-12 69.0 6.3 52 25-91 1-52 (163)
43 KOG0813 Glyoxylase [General fu 98.7 1.7E-08 3.6E-13 76.8 3.5 73 37-109 13-85 (265)
44 TIGR02650 RNase_Z_T_toga ribon 98.5 1.6E-07 3.5E-12 72.2 4.9 70 42-119 14-90 (277)
45 COG2248 Predicted hydrolase (m 98.1 1.9E-06 4.2E-11 64.9 1.9 68 24-91 1-81 (304)
46 PF13691 Lactamase_B_4: tRNase 98.0 8E-06 1.7E-10 49.1 3.6 49 38-91 13-63 (63)
47 PF02112 PDEase_II: cAMP phosp 98.0 2E-05 4.3E-10 62.4 6.6 94 25-118 2-126 (335)
48 COG2015 Alkyl sulfatase and re 97.7 1.5E-05 3.2E-10 65.2 0.9 75 37-111 126-203 (655)
49 PF14597 Lactamase_B_5: Metall 96.5 0.0014 3E-08 47.4 1.8 83 23-115 9-91 (199)
50 COG5212 PDE1 Low-affinity cAMP 95.7 0.0062 1.3E-07 46.9 1.9 50 74-123 111-162 (356)
51 KOG3592 Microtubule-associated 95.5 0.0082 1.8E-07 51.6 2.1 65 26-98 40-104 (934)
52 KOG0814 Glyoxylase [General fu 95.5 0.0077 1.7E-07 43.5 1.6 60 37-100 21-82 (237)
53 KOG1137 mRNA cleavage and poly 95.5 0.2 4.4E-06 42.2 10.0 108 19-129 146-266 (668)
54 KOG4736 Uncharacterized conser 95.0 0.023 5E-07 44.0 3.0 53 37-97 95-147 (302)
55 KOG1361 Predicted hydrolase in 94.3 0.086 1.9E-06 43.8 5.0 42 75-120 112-153 (481)
56 KOG3798 Predicted Zn-dependent 90.5 0.41 8.9E-06 36.8 3.8 56 36-92 87-149 (343)
57 KOG2121 Predicted metal-depend 80.8 0.33 7.1E-06 42.1 -1.1 96 17-117 42-144 (746)
58 PF06415 iPGM_N: BPG-independe 41.3 15 0.00033 27.6 1.3 24 83-107 42-65 (223)
59 COG1107 Archaea-specific RecJ- 40.0 15 0.00032 31.8 1.1 38 48-90 421-458 (715)
60 COG0622 Predicted phosphoester 27.0 48 0.0011 23.8 1.9 30 78-107 83-116 (172)
61 PF13911 AhpC-TSA_2: AhpC/TSA 24.4 1.5E+02 0.0033 19.0 3.9 42 73-118 11-52 (115)
62 PF03527 RHS: RHS protein; In 23.6 22 0.00048 19.2 -0.3 18 81-98 1-18 (41)
63 PF00797 Acetyltransf_2: N-ace 20.9 1.2E+02 0.0027 22.4 3.2 23 36-58 87-109 (240)
No 1
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.89 E-value=3e-22 Score=160.50 Aligned_cols=137 Identities=29% Similarity=0.533 Sum_probs=120.1
Q ss_pred CCCCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCC--CCCCCCccEEEecCCchhhhCChhHH
Q 031588 18 SREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPYF 95 (157)
Q Consensus 18 ~~~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~--~~~~~~i~~I~iTH~H~DH~gg~~~l 95 (157)
...+.-++++.||+..++|.+|+++.+++..||+|||......+....+++. ++....+|+|+|||+|.||+|-+|+|
T Consensus 175 ~~~~~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~L 254 (637)
T COG1782 175 LVKDRWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLL 254 (637)
T ss_pred cccCceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhh
Confidence 3456679999999999999999999999999999999976554344444443 45555899999999999999999999
Q ss_pred HhhcCCCceEEechHHHHHHHHhHHHHHHhhhcccCCCCCCHHHHHHHHhcceEecccee
Q 031588 96 LEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCFLSCC 155 (157)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~v~~~~~ 155 (157)
.+ ++++.|||++++|.+++-.+..|++++....+..+.|+..+|++++.+-+++.|+..
T Consensus 255 fk-Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgev 313 (637)
T COG1782 255 FK-YGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEV 313 (637)
T ss_pred hh-cCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcc
Confidence 85 678999999999999999999999999999999999999999999999999999864
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.88 E-value=1.2e-21 Score=164.97 Aligned_cols=138 Identities=27% Similarity=0.475 Sum_probs=111.7
Q ss_pred CCCCCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCC--CCCCCCCccEEEecCCchhhhCChhH
Q 031588 17 VSREGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDPSAIDVLLITHFHLDHAASLPY 94 (157)
Q Consensus 17 ~~~~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~--~~~~~~~i~~I~iTH~H~DH~gg~~~ 94 (157)
+...++.|+|++||+.+++|.||++|+.++..+|||||...........+.+ ......+||+|||||+|.||+|++++
T Consensus 168 ~~~~~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~ 247 (630)
T TIGR03675 168 PIFKDRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPL 247 (630)
T ss_pred CCCCCCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHH
Confidence 3345668999999999999999999999999999999986532111222221 23446789999999999999999999
Q ss_pred HHhhcCCCceEEechHHHHHHHHhHHHHHHhhhcccCCCCCCHHHHHHHHhcceEecccee
Q 031588 95 FLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCFLSCC 155 (157)
Q Consensus 95 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~v~~~~~ 155 (157)
+.+. +++.+||++.+|.+++..++.++.+........+.|+.++++.++.+...++|++.
T Consensus 248 L~k~-g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~ 307 (630)
T TIGR03675 248 LFKY-GYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEV 307 (630)
T ss_pred HHHh-CCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCe
Confidence 9864 45789999999999999888888877655545578999999999999999999875
No 3
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.86 E-value=4.9e-21 Score=147.39 Aligned_cols=135 Identities=41% Similarity=0.746 Sum_probs=114.6
Q ss_pred CeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCC-----CCCCCCccEEEecCCchhhhCChhHHH
Q 031588 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDVLLITHFHLDHAASLPYFL 96 (157)
Q Consensus 22 ~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~-----~~~~~~i~~I~iTH~H~DH~gg~~~l~ 96 (157)
..|++++||.|+.+|.+|+++..++++|++|||....+...++++.+. +.-...||.|+|||.|.||+|++|++.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 358899999999999999999999999999999976555444444332 222346999999999999999999999
Q ss_pred hhcCCCceEEechHHHHHHHHhHHHHHHhhhccc-CCCCCCHHHHHHHHhcceEeccceec
Q 031588 97 EKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSV-EDMLFDEQDINRSMDRIEVCFLSCCL 156 (157)
Q Consensus 97 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~i~~v~~~~~~ 156 (157)
+..+++.|||++.+|+++...++.|+.++.-... ...+|+.++|.+++.++.++..+|..
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~ 142 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTI 142 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheE
Confidence 9989999999999999999999999998876543 44699999999999999999888753
No 4
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.85 E-value=1.7e-21 Score=157.25 Aligned_cols=136 Identities=66% Similarity=1.067 Sum_probs=128.7
Q ss_pred CCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc
Q 031588 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT 99 (157)
Q Consensus 20 ~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~ 99 (157)
+++.+.+++||+|.++|.+|.+++..+++|++|||....+.+...++.+..++...+|.++|||+|.||++.+|++.++.
T Consensus 10 ~~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkT 89 (668)
T KOG1137|consen 10 NSDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKT 89 (668)
T ss_pred CCCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeec
Confidence 36789999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred CCCceEEechHHHHHHHHhHHHHHHhhhcccCCCCCCHHHHHHHHhcceEecccee
Q 031588 100 TFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCFLSCC 155 (157)
Q Consensus 100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~v~~~~~ 155 (157)
.+..++|++.+|+..++.++.++.+.......+.+|+..|+.+.+++|+.+.|.+.
T Consensus 90 sf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~ 145 (668)
T KOG1137|consen 90 SFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHET 145 (668)
T ss_pred cccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccc
Confidence 88899999999999999999999999988877799999999999999999999874
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.4e-18 Score=139.67 Aligned_cols=128 Identities=37% Similarity=0.619 Sum_probs=108.8
Q ss_pred EEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCc
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSG 103 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~ 103 (157)
|.+.++|+..++|.+|.+++.++..+|+|||....... ...+... ..+ ++|+++|||+|.||+|+++++.... ++.
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~-~~~-~vDavllTHaHlDH~g~lp~l~~~~-~~~ 76 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLP-PFP-KVDAVLLTHAHLDHIGALPYLVRNG-FEG 76 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCC-CCC-CcCEEEeccCchhhhcccHHHHHhc-cCC
Confidence 56889999999999999999999999999999765543 3443332 222 7999999999999999999998754 468
Q ss_pred eEEechHHHHHHHHhHHHHHHhhhcccCCCCCCHHHHHHHHhcceEeccceec
Q 031588 104 RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCFLSCCL 156 (157)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~v~~~~~~ 156 (157)
+||++.+|.++++.++.+..+.... ...+.|+.+|++.+++++.+++|++.+
T Consensus 77 ~v~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~ 128 (427)
T COG1236 77 PVYATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPV 128 (427)
T ss_pred ceeeccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCce
Confidence 9999999999999999999988755 445899999999999999999999864
No 6
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.72 E-value=7.5e-17 Score=133.17 Aligned_cols=131 Identities=21% Similarity=0.366 Sum_probs=106.7
Q ss_pred EEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCc
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSG 103 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~ 103 (157)
++++.+-+....+.-||+++.++.+||||||+...+. ...+..+. .-...||+|++||...-|+||++|.....++++
T Consensus 2 i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~-~~~i~~l~-~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~ 79 (764)
T KOG1135|consen 2 IKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFD-MSMIKELK-PVIPTIDAILLSHPDILHLGALPYAVGKLGLNA 79 (764)
T ss_pred eeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhc-cchhhhhh-cccccccEEEecCCChHHhccchhhHhhCCccc
Confidence 3444544444456889999999999999999976543 22222222 235689999999999999999999999988899
Q ss_pred eEEechHHHHHHHHhHHHHHHhhhcccCCCCCCHHHHHHHHhcceEeccceec
Q 031588 104 RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVCFLSCCL 156 (157)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~v~~~~~~ 156 (157)
+||++-+...+.+..+.|.......-+....|+.+|+..+|++|.+++|||..
T Consensus 80 ~VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v 132 (764)
T KOG1135|consen 80 PVYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPV 132 (764)
T ss_pred eEEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceE
Confidence 99999999999999999988776554456799999999999999999999975
No 7
>PRK00055 ribonuclease Z; Reviewed
Probab=99.66 E-value=1.3e-16 Score=121.74 Aligned_cols=92 Identities=30% Similarity=0.461 Sum_probs=70.3
Q ss_pred eEEEEEecCCCCc-----cccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 23 QLTIIPLGAGNEV-----GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 23 ~~~i~~lg~~~~~-----~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
||+|++||+|+.. +++|++|+.++..+|||||.+. .......+++..++++||+||.|+||++|++.+..
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~-----~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~ 75 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGT-----QRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLS 75 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHH-----HHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHH
Confidence 6999999998864 5889999999999999999742 11111124566789999999999999999998874
Q ss_pred hc-----CCCceEEechHHHHHHHHhH
Q 031588 98 KT-----TFSGRVFMTHATKAIYKLLL 119 (157)
Q Consensus 98 ~~-----~~~~~i~~~~~~~~~~~~~~ 119 (157)
.+ ..+.+||+++.+.+.++...
T Consensus 76 ~~~~~~~~~~l~iy~p~~~~~~~~~~~ 102 (270)
T PRK00055 76 TRSLSGRTEPLTIYGPKGIKEFVETLL 102 (270)
T ss_pred HhhhcCCCceEEEECCccHHHHHHHHH
Confidence 32 12467999988887766543
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.63 E-value=2.6e-15 Score=121.98 Aligned_cols=95 Identities=25% Similarity=0.435 Sum_probs=72.3
Q ss_pred EEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCC----CCCCC--CCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA----LPYFD--EIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~----~~~~~--~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
++++++|+.+++|.|||+++.++..+|||||.......... ++.+. .....++++||+||+|.||++|++.+.+
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 47899999999999999999999999999998532111100 01111 1134689999999999999999999987
Q ss_pred hcCCCceEEechHHHHHHHHhH
Q 031588 98 KTTFSGRVFMTHATKAIYKLLL 119 (157)
Q Consensus 98 ~~~~~~~i~~~~~~~~~~~~~~ 119 (157)
.++ ..+||+++.+..+++..+
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~ 101 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKI 101 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHH
Confidence 653 368999999988876543
No 9
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.56 E-value=3.8e-15 Score=115.67 Aligned_cols=90 Identities=28% Similarity=0.397 Sum_probs=67.6
Q ss_pred EEEEecCCCC-----ccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc
Q 031588 25 TIIPLGAGNE-----VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT 99 (157)
Q Consensus 25 ~i~~lg~~~~-----~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~ 99 (157)
+|++||+++. .+.+|++|+.++..+|||||.+. .......+++..++++|||||.|+||++|++.++...
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~-----~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~ 75 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT-----QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTM 75 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH-----HHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhh
Confidence 4789999885 46789999999999999999742 1111111345678999999999999999999887532
Q ss_pred C-----CCceEEechHHHHHHHHhH
Q 031588 100 T-----FSGRVFMTHATKAIYKLLL 119 (157)
Q Consensus 100 ~-----~~~~i~~~~~~~~~~~~~~ 119 (157)
. .+.+||++..+.+.++...
T Consensus 76 ~~~~~~~~i~Iy~p~~~~~~l~~~~ 100 (299)
T TIGR02651 76 SFQGRKEPLTIYGPPGIKEFIETSL 100 (299)
T ss_pred ccCCCCceEEEECCccHHHHHHHHH
Confidence 1 1467999998887766543
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.55 E-value=3e-14 Score=118.19 Aligned_cols=100 Identities=25% Similarity=0.463 Sum_probs=80.4
Q ss_pred CCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCC---C-CCCCC--CCCCCCCccEEEecCCchhhhCChh
Q 031588 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM---A-ALPYF--DEIDPSAIDVLLITHFHLDHAASLP 93 (157)
Q Consensus 20 ~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~---~-~~~~~--~~~~~~~i~~I~iTH~H~DH~gg~~ 93 (157)
+++.+++..||+-++.|.||++++.++..+++|||........ . .++.. ......++++|||||+|.||+||+|
T Consensus 5 ~~~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip 84 (555)
T COG0595 5 KKAKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALP 84 (555)
T ss_pred CCCceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchH
Confidence 3468999999999999999999999999999999995432211 0 01222 1234469999999999999999999
Q ss_pred HHHhhcCCCceEEechHHHHHHHHhHH
Q 031588 94 YFLEKTTFSGRVFMTHATKAIYKLLLT 120 (157)
Q Consensus 94 ~l~~~~~~~~~i~~~~~~~~~~~~~~~ 120 (157)
+++.+.. .+|||+++.+..+++..+.
T Consensus 85 ~ll~~~~-~~piy~s~lt~~Li~~k~~ 110 (555)
T COG0595 85 YLLKQVL-FAPIYASPLTAALIKEKLK 110 (555)
T ss_pred HHHhcCC-cCceecCHhhHHHHHHHHH
Confidence 9998764 4999999999999887766
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.52 E-value=1.4e-14 Score=113.04 Aligned_cols=89 Identities=21% Similarity=0.374 Sum_probs=65.3
Q ss_pred EEEecCCCC-----ccccEEEEEEC----CeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHH
Q 031588 26 IIPLGAGNE-----VGRSCVYMSYK----GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFL 96 (157)
Q Consensus 26 i~~lg~~~~-----~~~~~~li~~~----~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~ 96 (157)
|++||+++. .+.+|++++.. +..+|||||.+. .......++++.+|++|||||.|+||++|++.++
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~-----~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll 75 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT-----QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLL 75 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccH-----HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHH
Confidence 578998874 36889999864 368999999843 2211112456789999999999999999999876
Q ss_pred hhc-----CCCceEEechHHHHHHHHhH
Q 031588 97 EKT-----TFSGRVFMTHATKAIYKLLL 119 (157)
Q Consensus 97 ~~~-----~~~~~i~~~~~~~~~~~~~~ 119 (157)
... ..+.+||++..+.+.++..+
T Consensus 76 ~~~~~~~~~~~l~Iygp~~~~~~l~~~~ 103 (303)
T TIGR02649 76 CSRSMSGIIQPLTIYGPQGIREFVETAL 103 (303)
T ss_pred HHHHhcCCCCCeEEEechhHHHHHHHHH
Confidence 431 12468999999888766543
No 12
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.51 E-value=2.8e-14 Score=111.34 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=56.3
Q ss_pred ccEEEEEECC-eEEEEecCCCCCcCCCCCC---CCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHH
Q 031588 37 RSCVYMSYKG-KTILFDCGIHPAYSGMAAL---PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATK 112 (157)
Q Consensus 37 ~~~~li~~~~-~~iLiD~G~~~~~~~~~~~---~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~ 112 (157)
.+|++|+.++ ..+|||||.+.... +.+. ....+++..+||+|||||.|+||++|++.+... .+.+||++..+.
T Consensus 39 ~ss~li~~~g~~~iLiD~G~g~~~q-l~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~--~~l~Vyg~~~~~ 115 (302)
T PRK05184 39 QSSIAVSADGEDWVLLNASPDIRQQ-IQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG--QPFPVYATPAVL 115 (302)
T ss_pred ccEEEEEcCCCEEEEEECChhHHHH-HHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccC--CCeEEEeCHHHH
Confidence 5678887655 46999999843221 1111 111245667899999999999999999999653 368999999988
Q ss_pred HHHHH
Q 031588 113 AIYKL 117 (157)
Q Consensus 113 ~~~~~ 117 (157)
+.++.
T Consensus 116 ~~l~~ 120 (302)
T PRK05184 116 EDLST 120 (302)
T ss_pred HHHHh
Confidence 77654
No 13
>PRK02113 putative hydrolase; Provisional
Probab=99.51 E-value=5e-14 Score=107.04 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=64.0
Q ss_pred EEEEEecCCCCcc---------------------ccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEec
Q 031588 24 LTIIPLGAGNEVG---------------------RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82 (157)
Q Consensus 24 ~~i~~lg~~~~~~---------------------~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iT 82 (157)
|++++||+|++.| .+|++|+.++..+|||||.+... ++ ......++|+||||
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~----~l---~~~~~~~id~I~lT 73 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFRE----QM---LRLPFGKIDAVLIT 73 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHH----HH---HhcCccccCEEEEC
Confidence 6788898776432 46789999999999999973211 11 11246789999999
Q ss_pred CCchhhhCChhHHHhhc-CCCceEEechHHHHHHHH
Q 031588 83 HFHLDHAASLPYFLEKT-TFSGRVFMTHATKAIYKL 117 (157)
Q Consensus 83 H~H~DH~gg~~~l~~~~-~~~~~i~~~~~~~~~~~~ 117 (157)
|.|+||++|++.+.... ..+.+||+++.+.+.+..
T Consensus 74 H~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 109 (252)
T PRK02113 74 HEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred CCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHh
Confidence 99999999999886421 125789999887776654
No 14
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.51 E-value=2.2e-14 Score=111.39 Aligned_cols=93 Identities=29% Similarity=0.476 Sum_probs=71.4
Q ss_pred eEEEEEecCCCC-----ccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 23 QLTIIPLGAGNE-----VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 23 ~~~i~~lg~~~~-----~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
+|++++||+++. .+.++++++.++..+|||||.+ ........++.+.+|++|||||.|.||+.|++.++.
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeG-----t~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~ 75 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEG-----TQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLV 75 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHh-----HHHHHHHhcCChhhccEEEeeccccchhcCcHHHHH
Confidence 589999999987 5788999998889999999974 322222235666799999999999999999998765
Q ss_pred hcCC-----CceEEechHHHHHHHHhHH
Q 031588 98 KTTF-----SGRVFMTHATKAIYKLLLT 120 (157)
Q Consensus 98 ~~~~-----~~~i~~~~~~~~~~~~~~~ 120 (157)
...+ +..||.+....+++...+.
T Consensus 76 ~~~~~~~~~~l~iygP~g~~~~~~~~~~ 103 (292)
T COG1234 76 SRSFRGRREPLKIYGPPGIKEFVETSLR 103 (292)
T ss_pred HhhccCCCCceeEECCcchhhhhhhhhh
Confidence 5321 2578999887777665543
No 15
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.50 E-value=9.8e-14 Score=105.43 Aligned_cols=80 Identities=21% Similarity=0.399 Sum_probs=61.3
Q ss_pred EEEEEecCCCCc-----------------------cccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEE
Q 031588 24 LTIIPLGAGNEV-----------------------GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80 (157)
Q Consensus 24 ~~i~~lg~~~~~-----------------------~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~ 80 (157)
|++++||+++.. ..+|++|+.++..+|||||... ... .....+||+||
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~----~~~-----~~~~~~i~~i~ 71 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPD----LAE-----RFPPGSLQQIL 71 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChH----Hhh-----cCCcccCCEEE
Confidence 789999988871 3678999999999999999631 111 13467999999
Q ss_pred ecCCchhhhCChhHHHhhcCCCceEEechHHH
Q 031588 81 ITHFHLDHAASLPYFLEKTTFSGRVFMTHATK 112 (157)
Q Consensus 81 iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~ 112 (157)
|||.|.||++|+..+......+.+||++..+.
T Consensus 72 iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~ 103 (250)
T PRK11244 72 LTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPE 103 (250)
T ss_pred EccCchhhhccHHHHHhhcCCceeEEeCCchh
Confidence 99999999999988754332357899987654
No 16
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.47 E-value=7.4e-14 Score=108.90 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred ccEEEEEE-CCeEEEEecCCCCCcCCCCCCCC---CCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHH
Q 031588 37 RSCVYMSY-KGKTILFDCGIHPAYSGMAALPY---FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATK 112 (157)
Q Consensus 37 ~~~~li~~-~~~~iLiD~G~~~~~~~~~~~~~---~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~ 112 (157)
.+|++|+. ++.+||||||.+.... +..... ..+++..+|++||+||.|.||+.|++.|.+. .+.+||+++.+.
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r~q-l~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~--~~lpVya~~~t~ 114 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIRQQ-IQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREG--QPFTLYATEMVL 114 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHHHH-HHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCC--CCceEEECHHHH
Confidence 56788865 5568999999843211 111111 1156678999999999999999999999754 379999999988
Q ss_pred HHHHH
Q 031588 113 AIYKL 117 (157)
Q Consensus 113 ~~~~~ 117 (157)
+.++.
T Consensus 115 ~~L~~ 119 (302)
T TIGR02108 115 QDLSD 119 (302)
T ss_pred HHHHh
Confidence 87753
No 17
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.43 E-value=1.5e-13 Score=103.20 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=58.2
Q ss_pred ccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHH
Q 031588 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKA 113 (157)
Q Consensus 37 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~ 113 (157)
+-|+||+.++.+||||+|..... +.......++++.+||+++|||.|+||+||++++.+....+.++|+++....
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~--ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDV--LLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHH--HHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 34578899999999999974321 1111223478899999999999999999999999886544789999887765
No 18
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.38 E-value=4.5e-13 Score=95.88 Aligned_cols=78 Identities=31% Similarity=0.460 Sum_probs=59.2
Q ss_pred ccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHH
Q 031588 35 VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114 (157)
Q Consensus 35 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~ 114 (157)
.+.||++|+.++..+|||||..... ..+..+......++++|++||.|.||++|++.+.+.. ++++|++....+.
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~---~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~--~~~i~~~~~~~~~ 78 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE---DLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAP--GAPVYAPEGTAEL 78 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH---HHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCC--CCcEEEchhhhHH
Confidence 3579999999999999999964321 1111122233679999999999999999999998763 6889999888876
Q ss_pred HHH
Q 031588 115 YKL 117 (157)
Q Consensus 115 ~~~ 117 (157)
++.
T Consensus 79 ~~~ 81 (183)
T smart00849 79 LKD 81 (183)
T ss_pred Hhc
Confidence 653
No 19
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.37 E-value=1.4e-13 Score=98.46 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=54.6
Q ss_pred cccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHH
Q 031588 36 GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKA 113 (157)
Q Consensus 36 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~ 113 (157)
+.|||+|+.++..+|||||.......... ....+....+|++||+||.|.||+||+..+.+... ...++.......
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~-~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~ 80 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELE-LALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAK 80 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHH-HHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhh-hhHhhccCCCeEEEEECcccccccccccccccccc-eeeeeccccccc
Confidence 57999999999999999998543221110 01235677899999999999999999999998864 233444433333
No 20
>PRK02126 ribonuclease Z; Provisional
Probab=99.34 E-value=5.4e-12 Score=99.74 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred eEEEEEecCCCCccccEEEEEEC--CeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc-
Q 031588 23 QLTIIPLGAGNEVGRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT- 99 (157)
Q Consensus 23 ~~~i~~lg~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~- 99 (157)
+++.++..+.. ..|||++..+ +..+|||||. ...+ ...+..+|++||+||.|.||++|++.|+...
T Consensus 4 ~~~~~~~~g~~--~dn~~~l~~~~~~~~iLiD~G~------~~~l---~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~ 72 (334)
T PRK02126 4 LLEPRLVNGPF--DDPGLYVDFLFERRALLFDLGD------LHHL---PPRELLRISHIFVSHTHMDHFIGFDRLLRHCL 72 (334)
T ss_pred cceeEEecCCC--CCcEEEEEECCCCeEEEEcCCC------HHHH---hhcCCCccCEEEEcCCChhHhCcHHHHHHHhc
Confidence 44444444333 3799998764 7889999996 1111 1235678999999999999999999998754
Q ss_pred --CCCceEEechHHHHHHHHhHH
Q 031588 100 --TFSGRVFMTHATKAIYKLLLT 120 (157)
Q Consensus 100 --~~~~~i~~~~~~~~~~~~~~~ 120 (157)
..+++||++..+.+.++..+.
T Consensus 73 ~r~~~l~iygp~~~~~~l~~~~~ 95 (334)
T PRK02126 73 GRPRRLRLFGPPGFADQVEHKLA 95 (334)
T ss_pred cCCCCeEEEECHHHHHHHHHHhc
Confidence 124789999999998887654
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.32 E-value=1.2e-11 Score=92.52 Aligned_cols=79 Identities=25% Similarity=0.291 Sum_probs=58.7
Q ss_pred EEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCc
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSG 103 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~ 103 (157)
|+|+++| ++|++|+.++.++|||++..... ... + .....++|+|++||.|.||++++..+.... ++
T Consensus 1 m~i~~lG------~s~~li~~~~~~iLiDP~~~~~~--~~~---~-~~~~~~id~vliTH~H~DH~~~~~~~~~~~--~~ 66 (228)
T PRK00685 1 MKITWLG------HSAFLIETGGKKILIDPFITGNP--LAD---L-KPEDVKVDYILLTHGHGDHLGDTVEIAKRT--GA 66 (228)
T ss_pred CEEEEEc------ceEEEEEECCEEEEECCCCCCCC--CCC---C-ChhcCcccEEEeCCCCccccccHHHHHHhC--CC
Confidence 6888998 68899999999999998763211 101 1 112238999999999999999988876543 68
Q ss_pred eEEechHHHHHHH
Q 031588 104 RVFMTHATKAIYK 116 (157)
Q Consensus 104 ~i~~~~~~~~~~~ 116 (157)
++|++....+.++
T Consensus 67 ~v~~~~~~~~~~~ 79 (228)
T PRK00685 67 TVIANAELANYLS 79 (228)
T ss_pred EEEEeHHHHHHHH
Confidence 8999887766654
No 22
>PRK04286 hypothetical protein; Provisional
Probab=99.26 E-value=7.3e-12 Score=97.63 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=50.6
Q ss_pred EEEEEecCCCC-ccccEEEEEECCeEEEEecCCCCCcCC--CC----------CCCCCCCCCCCCccEEEecCCchhhhC
Q 031588 24 LTIIPLGAGNE-VGRSCVYMSYKGKTILFDCGIHPAYSG--MA----------ALPYFDEIDPSAIDVLLITHFHLDHAA 90 (157)
Q Consensus 24 ~~i~~lg~~~~-~~~~~~li~~~~~~iLiD~G~~~~~~~--~~----------~~~~~~~~~~~~i~~I~iTH~H~DH~g 90 (157)
|++.+||+++. ..+||++|+.++.+||||+|....... .. ...........++|+||+||.|+||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 67889998663 346999999999999999996421110 00 000001234568999999999999999
Q ss_pred ChhHH
Q 031588 91 SLPYF 95 (157)
Q Consensus 91 g~~~l 95 (157)
|+..+
T Consensus 81 g~~~~ 85 (298)
T PRK04286 81 PFYED 85 (298)
T ss_pred Ccccc
Confidence 87765
No 23
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.21 E-value=4.8e-11 Score=90.03 Aligned_cols=69 Identities=20% Similarity=0.368 Sum_probs=52.7
Q ss_pred ccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHH
Q 031588 35 VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATK 112 (157)
Q Consensus 35 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~ 112 (157)
...+|++|+.++..+|||||... ... .....+|++|||||.|.||++|+..+......+.+||++..+.
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~----~~~-----~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~ 93 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTD----LAE-----RFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEE 93 (238)
T ss_pred CcceEEEEEECCcEEEEECCChh----Hhh-----ccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHh
Confidence 45678899999999999999632 111 2345789999999999999999987755433367899988764
No 24
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.21 E-value=1.8e-11 Score=98.75 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=56.8
Q ss_pred cccEEEEEECCeEEEEecCCCCCcCCCCCCCCC-CCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHH
Q 031588 36 GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF-DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114 (157)
Q Consensus 36 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~-~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~ 114 (157)
..|||+|.. +..+|||+|......... ..+ ...+..+|++|++||.|+||+||++.+.+.++ ++++|+++.+.+.
T Consensus 32 ~~NsyLI~~-~~~vLIDtg~~~~~~~~~--~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~ 107 (394)
T PRK11921 32 SYNSYLIKD-EKTVLIDTVWQPFAKEFV--ENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKS 107 (394)
T ss_pred EEEEEEEeC-CCEEEEeCCCCCcHHHHH--HHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHH
Confidence 469999975 568999999743211111 111 12456789999999999999999999998765 6899999887766
Q ss_pred HH
Q 031588 115 YK 116 (157)
Q Consensus 115 ~~ 116 (157)
++
T Consensus 108 l~ 109 (394)
T PRK11921 108 LK 109 (394)
T ss_pred HH
Confidence 54
No 25
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.16 E-value=2.8e-11 Score=92.53 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred EEEEEecCCCCccccEEEEEEC--CeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCC
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF 101 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~ 101 (157)
|++..++.... +.||+|..+ +..+|||+|... .+ +..++. ...+|++|++||.|+||+||+..|.+.++
T Consensus 1 ~~i~~~~~~~d--Ny~Yli~d~~~~~~vlIDp~~~~---~i--l~~l~~-~g~~l~~Il~TH~H~DH~gG~~~l~~~~~- 71 (258)
T PLN02469 1 MKIIPVPCLED--NYAYLIIDESTKDAAVVDPVDPE---KV--LQAAHE-HGAKIKLVLTTHHHWDHAGGNEKIKKLVP- 71 (258)
T ss_pred CeEEEeccccc--eEEEEEEeCCCCeEEEECCCChH---HH--HHHHHH-cCCcccEEEecCCCCccccCHHHHHHHCC-
Confidence 35666665542 338999765 378999999521 11 111112 23579999999999999999999998764
Q ss_pred CceEEechH
Q 031588 102 SGRVFMTHA 110 (157)
Q Consensus 102 ~~~i~~~~~ 110 (157)
+++||++..
T Consensus 72 ~~~V~~~~~ 80 (258)
T PLN02469 72 GIKVYGGSL 80 (258)
T ss_pred CCEEEEech
Confidence 589998754
No 26
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.15 E-value=5.1e-11 Score=98.36 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=56.8
Q ss_pred cccEEEEEECCeEEEEecCCCCCcCCC-CCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHH
Q 031588 36 GRSCVYMSYKGKTILFDCGIHPAYSGM-AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAI 114 (157)
Q Consensus 36 ~~~~~li~~~~~~iLiD~G~~~~~~~~-~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~ 114 (157)
..|||||.. +..+|||+|........ ..+. ...++.+|++|++||.|.||+||++.|++.++ +++||+++.+...
T Consensus 34 t~NsYLI~~-~~~vLIDtg~~~~~~~~l~~l~--~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~ 109 (479)
T PRK05452 34 SYNSYLIRE-EKNVLIDTVDHKFSREFVQNLR--NEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDS 109 (479)
T ss_pred EEEEEEEEC-CCEEEEeCCCcccHHHHHHHHH--hcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHH
Confidence 369999984 57899999963211111 1111 12445789999999999999999999998764 6899999988766
Q ss_pred HH
Q 031588 115 YK 116 (157)
Q Consensus 115 ~~ 116 (157)
+.
T Consensus 110 l~ 111 (479)
T PRK05452 110 IN 111 (479)
T ss_pred HH
Confidence 54
No 27
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.11 E-value=4.2e-11 Score=91.08 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=48.6
Q ss_pred ccEEEEEECC-eEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHH
Q 031588 37 RSCVYMSYKG-KTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHAT 111 (157)
Q Consensus 37 ~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~ 111 (157)
+++|++..++ ..+|||+|... ..+..++.. ..++++|++||.|.||+||+..+.+.+ +++||++..+
T Consensus 10 N~~yli~~~~~~~ilID~g~~~-----~i~~~l~~~-g~~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~ 77 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE-----PVLDALEAR-GLTLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEE 77 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH-----HHHHHHHHc-CCeeeEEEeCCCCccccCCHHHHHHHC--CCeEEecccc
Confidence 5677877665 79999999632 111111122 236899999999999999999998876 4889987654
No 28
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.09 E-value=7.8e-11 Score=89.78 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=54.1
Q ss_pred EEEEEecCCCCccccEEEEEEC-CeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCC
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYK-GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS 102 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~-~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~ 102 (157)
|+|+.+..... +.+|++..+ +..+|||+|... ..+..+... ..++++|++||.|.||+||+..+.+.++ .
T Consensus 1 ~~i~~~~~~~d--Ny~~li~~~~~~~ilIDpg~~~-----~vl~~l~~~-g~~l~~IllTH~H~DHigG~~~l~~~~~-~ 71 (251)
T PRK10241 1 MNLNSIPAFDD--NYIWVLNDEAGRCLIVDPGEAE-----PVLNAIAEN-NWQPEAIFLTHHHHDHVGGVKELVEKFP-Q 71 (251)
T ss_pred CeeEEeeeecc--eEEEEEEcCCCcEEEECCCChH-----HHHHHHHHc-CCccCEEEeCCCCchhhccHHHHHHHCC-C
Confidence 45666666553 455777554 568999999632 111111122 2367899999999999999999998865 5
Q ss_pred ceEEechHH
Q 031588 103 GRVFMTHAT 111 (157)
Q Consensus 103 ~~i~~~~~~ 111 (157)
++||++...
T Consensus 72 ~~V~~~~~~ 80 (251)
T PRK10241 72 IVVYGPQET 80 (251)
T ss_pred CEEEecccc
Confidence 889987543
No 29
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.06 E-value=2.5e-10 Score=89.84 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=58.5
Q ss_pred eEEEEEecCCCCccccEEEEEEC--CeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcC
Q 031588 23 QLTIIPLGAGNEVGRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT 100 (157)
Q Consensus 23 ~~~i~~lg~~~~~~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~ 100 (157)
.|+|+.+..... +++|+|..+ +..++||+|... ..+..+. ....+|++|++||.|+||+||+..|.+.+
T Consensus 75 ~~~i~~ip~l~d--Ny~Yli~d~~t~~~~vVDP~~a~-----~vl~~l~-~~g~~L~~ILlTH~H~DH~GG~~~L~~~~- 145 (329)
T PLN02398 75 SLQIELVPCLKD--NYAYLLHDEDTGTVGVVDPSEAV-----PVIDALS-RKNRNLTYILNTHHHYDHTGGNLELKARY- 145 (329)
T ss_pred CcEEEEEeeeCc--eEEEEEEECCCCEEEEEcCCCHH-----HHHHHHH-hcCCCceEEEECCCCchhhCCHHHHHHhc-
Confidence 567777776443 568998654 468999998522 1111111 22457999999999999999999998876
Q ss_pred CCceEEechHHHH
Q 031588 101 FSGRVFMTHATKA 113 (157)
Q Consensus 101 ~~~~i~~~~~~~~ 113 (157)
+++||++..+.+
T Consensus 146 -ga~V~g~~~~~~ 157 (329)
T PLN02398 146 -GAKVIGSAVDKD 157 (329)
T ss_pred -CCEEEEehHHhh
Confidence 589999877554
No 30
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.03 E-value=3.2e-10 Score=86.34 Aligned_cols=82 Identities=15% Similarity=0.111 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCCccccEEEEEE----CCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 22 DQLTIIPLGAGNEVGRSCVYMSY----KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 22 ~~~~i~~lg~~~~~~~~~~li~~----~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
+.|.++.+-..+ .+.+||++.. .+.++|||+|..... .+ +..++.. ..+|.+||+||.|.||++|+..|.+
T Consensus 9 ~~m~~~~~~~~~-~~~~~Yll~d~~~~~~~avlIDP~~~~~~-~~--l~~l~~~-g~~i~~Il~TH~H~DHigg~~~l~~ 83 (251)
T PLN02962 9 SKLLFRQLFEKE-SSTYTYLLADVSHPDKPALLIDPVDKTVD-RD--LSLVKEL-GLKLIYAMNTHVHADHVTGTGLLKT 83 (251)
T ss_pred CceEEEEeecCC-ceeEEEEEEeCCCCCCEEEEECCCCCcHH-HH--HHHHHHC-CCeeEEEEcCCCCchhHHHHHHHHH
Confidence 336655554333 2479999865 357899999852111 11 1111122 2468899999999999999999987
Q ss_pred hcCCCceEEech
Q 031588 98 KTTFSGRVFMTH 109 (157)
Q Consensus 98 ~~~~~~~i~~~~ 109 (157)
.++ ++++|+..
T Consensus 84 ~~~-~a~v~~~~ 94 (251)
T PLN02962 84 KLP-GVKSIISK 94 (251)
T ss_pred HCC-CCeEEecc
Confidence 754 57888754
No 31
>PRK11539 ComEC family competence protein; Provisional
Probab=99.03 E-value=3.9e-10 Score=97.76 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=62.3
Q ss_pred CCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCC---CCCCCCCCCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 21 GDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM---AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 21 ~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~---~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
+...+++++..|+ +.|++++.+++++|||+|........ ...++++..+. ++|.+++||.|.||+||++.+.+
T Consensus 498 ~~~~~v~~lDVGq---G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~ 573 (755)
T PRK11539 498 EYEWRVDMLDVGH---GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLH 573 (755)
T ss_pred CCcEEEEEEEccC---ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHH
Confidence 4668999999998 47888999999999999974221111 11123333444 59999999999999999999998
Q ss_pred hcCCCceEEech
Q 031588 98 KTTFSGRVFMTH 109 (157)
Q Consensus 98 ~~~~~~~i~~~~ 109 (157)
.++ ..+++.+.
T Consensus 574 ~~~-~~~i~~~~ 584 (755)
T PRK11539 574 AWP-MAWIRSPL 584 (755)
T ss_pred hCC-cceeeccC
Confidence 865 56777653
No 32
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.01 E-value=5.9e-10 Score=95.39 Aligned_cols=84 Identities=18% Similarity=0.370 Sum_probs=61.6
Q ss_pred CeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCC---CCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhh
Q 031588 22 DQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM---AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98 (157)
Q Consensus 22 ~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~---~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~ 98 (157)
...+++++..|+ +.|++|+.+++.+|||+|........ ...++++..+.+ ||.+++||.|.||+||++.+.+.
T Consensus 438 ~~~~v~~lDVGq---Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 438 SSWQVDMLDVGQ---GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred CCEEEEEEecCC---ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh
Confidence 368999999998 47899999889999999974211111 112233344555 99999999999999999999988
Q ss_pred cCCCceEEechH
Q 031588 99 TTFSGRVFMTHA 110 (157)
Q Consensus 99 ~~~~~~i~~~~~ 110 (157)
++ ..+++.+..
T Consensus 514 ~~-v~~i~~~~~ 524 (662)
T TIGR00361 514 HP-VKRLVIPKG 524 (662)
T ss_pred CC-ccEEEeccc
Confidence 64 346776543
No 33
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.99 E-value=3.7e-10 Score=86.85 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=50.0
Q ss_pred CeEEEEEecCCCCc-----cccE-------EEEEE--CCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchh
Q 031588 22 DQLTIIPLGAGNEV-----GRSC-------VYMSY--KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87 (157)
Q Consensus 22 ~~~~i~~lg~~~~~-----~~~~-------~li~~--~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~D 87 (157)
..|++++||+|+.. +.+| ..+.. ...+++||+|... ..+. ......++|+||+||.|+|
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~-----~~~~--~~~~~~~idai~~TH~H~D 74 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDL-----RDQG--LRLGVSDLDAILLTHEHSD 74 (269)
T ss_pred CceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhH-----Hhhh--hcccccccCeEEEecccHH
Confidence 46899999988753 2233 22221 2335677777632 1111 1122368999999999999
Q ss_pred hhCChhHHHhhcCCCceEEech
Q 031588 88 HAASLPYFLEKTTFSGRVFMTH 109 (157)
Q Consensus 88 H~gg~~~l~~~~~~~~~i~~~~ 109 (157)
|+.|++.|.+.+. .+++...
T Consensus 75 Hi~Gl~~l~~~~~--~~~~~~~ 94 (269)
T COG1235 75 HIQGLDDLRRAYT--LPIYVNP 94 (269)
T ss_pred hhcChHHHHHHhc--CCccccc
Confidence 9999999998653 4444433
No 34
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=83.29 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=64.1
Q ss_pred EEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCc
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSG 103 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~ 103 (157)
.++.++..|+ +.+++++.++..+++|+|... .....+++++..+..+||.+++||.|.||+||++.+++.+. -.
T Consensus 44 ~~~~~lDvGq---g~a~li~~~~~~~l~dtg~~~--~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~-v~ 117 (293)
T COG2333 44 WKVHMLDVGQ---GLATLIRSEGKTILYDTGNSM--GQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK-VP 117 (293)
T ss_pred ceEEEEEcCC---CeEEEEeeCCceEEeecCccc--CceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC-CC
Confidence 7888898888 477999999999999999852 23345667777888999999999999999999999999653 23
Q ss_pred eEEechH
Q 031588 104 RVFMTHA 110 (157)
Q Consensus 104 ~i~~~~~ 110 (157)
++|+...
T Consensus 118 ~~~i~~~ 124 (293)
T COG2333 118 ELWIYAG 124 (293)
T ss_pred cEEEeCC
Confidence 4554433
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.92 E-value=1.7e-09 Score=80.74 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=53.0
Q ss_pred EEEEEecCCCCccccEEEEEECC-eEEEEecCCCCCcCCCCCCC-CCCCCCCCCccEEEecCCchhhhCChhHHHhhcCC
Q 031588 24 LTIIPLGAGNEVGRSCVYMSYKG-KTILFDCGIHPAYSGMAALP-YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF 101 (157)
Q Consensus 24 ~~i~~lg~~~~~~~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~-~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~ 101 (157)
+.....+.......+++++..++ ..+|||+|..... ...+. .+..... +|+.|++||.|+||+||+..+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~liD~G~~~~~--~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~- 87 (252)
T COG0491 12 ITAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDAD--AEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG- 87 (252)
T ss_pred cEEEEecCcccccccEEEEEcCCCceEEEeCCCCchH--HHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC-
Confidence 34444443333345566666655 7999999985421 01111 1112222 89999999999999999999988753
Q ss_pred CceEEechHHHH
Q 031588 102 SGRVFMTHATKA 113 (157)
Q Consensus 102 ~~~i~~~~~~~~ 113 (157)
.++++.......
T Consensus 88 ~~~~~~~~~~~~ 99 (252)
T COG0491 88 AAPVIAPAEVPL 99 (252)
T ss_pred CceEEccchhhh
Confidence 367754444433
No 36
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.92 E-value=3.9e-09 Score=85.66 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=73.2
Q ss_pred CCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHHHHHhHHHHHHhhh------------------------
Q 031588 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSK------------------------ 127 (157)
Q Consensus 72 ~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------------ 127 (157)
+...||+|+||..| ...|+|++-+..+|..+||+++++.++.+.++.+.+.+..
T Consensus 93 d~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpspl 170 (653)
T KOG1138|consen 93 DASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPL 170 (653)
T ss_pred cccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCc
Confidence 45689999999999 6999999999999999999999999999999988776632
Q ss_pred -----cccCCCCCCHHHHHHHHhcceEeccceec
Q 031588 128 -----VSVEDMLFDEQDINRSMDRIEVCFLSCCL 156 (157)
Q Consensus 128 -----~~~~~~~~~~~~v~~~~~~i~~v~~~~~~ 156 (157)
...|+..|+.+|++.++.++..+.|+|.+
T Consensus 171 k~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~eki 204 (653)
T KOG1138|consen 171 KKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKI 204 (653)
T ss_pred hhhccccceeeeeehhHHHHHHHhheecccceee
Confidence 12588999999999999999999999863
No 37
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.89 E-value=4.4e-10 Score=94.42 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCCCCCCCCeEEEEEecCCCCc-----cccEEEEEECCe-EEEEecCCCCCcCCCCCCC-CCCCCCCCCccEEEecCCch
Q 031588 14 DVPVSREGDQLTIIPLGAGNEV-----GRSCVYMSYKGK-TILFDCGIHPAYSGMAALP-YFDEIDPSAIDVLLITHFHL 86 (157)
Q Consensus 14 ~~~~~~~~~~~~i~~lg~~~~~-----~~~~~li~~~~~-~iLiD~G~~~~~~~~~~~~-~~~~~~~~~i~~I~iTH~H~ 86 (157)
..|...+++.++|.+||+|+.. +.++++++.+.. .||+|||.+....-.++.. .....-.+++.+|+|||.|.
T Consensus 433 ~~P~~~e~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHA 512 (746)
T KOG2121|consen 433 HFPNFAEKKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHA 512 (746)
T ss_pred CCCCccccCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcc
Confidence 4466677789999999999963 678899988654 5999999965332111211 11122356899999999999
Q ss_pred hhhCChhHHHhhcCC--C----ce--EEechHHHHHHHHh
Q 031588 87 DHAASLPYFLEKTTF--S----GR--VFMTHATKAIYKLL 118 (157)
Q Consensus 87 DH~gg~~~l~~~~~~--~----~~--i~~~~~~~~~~~~~ 118 (157)
||..|+..+++++.. + -+ +.++....++++.+
T Consensus 513 DHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y 552 (746)
T KOG2121|consen 513 DHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEY 552 (746)
T ss_pred cccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHH
Confidence 999999999876421 1 12 44555555555544
No 38
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.86 E-value=8e-10 Score=80.14 Aligned_cols=69 Identities=29% Similarity=0.393 Sum_probs=43.5
Q ss_pred EEEEecCCCCCcC-CCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcC-CCceEEechHHHHHHHH
Q 031588 48 TILFDCGIHPAYS-GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT-FSGRVFMTHATKAIYKL 117 (157)
Q Consensus 48 ~iLiD~G~~~~~~-~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~-~~~~i~~~~~~~~~~~~ 117 (157)
++|||||.+.. + .+............++|+|||||.|.||+.|++.+..... ...++|+++.+.+.++.
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 72 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLRE 72 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHH
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHh
Confidence 69999998432 0 0110000001122399999999999999999888876531 11289999999888774
No 39
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.86 E-value=2e-09 Score=85.79 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCccccEEEEEECCeEEEEecCCCCCcCCC-CCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHH
Q 031588 33 NEVGRSCVYMSYKGKTILFDCGIHPAYSGM-AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHAT 111 (157)
Q Consensus 33 ~~~~~~~~li~~~~~~iLiD~G~~~~~~~~-~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~ 111 (157)
.+..-|+|||. +++.+|||++.......+ ..+ ...+++++||+|+++|..+||+|+++.+++..+ +++|+++...
T Consensus 32 ~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l--~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~ 107 (388)
T COG0426 32 RGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENL--SKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLA 107 (388)
T ss_pred CCceeeeEEEe-CCcEEEECCCCcchHHHHHHHH--HhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHH
Confidence 33457999999 889999999975432211 111 113678899999999999999999999998876 8999999999
Q ss_pred HHHHHHhHHHHH
Q 031588 112 KAIYKLLLTDYV 123 (157)
Q Consensus 112 ~~~~~~~~~~~~ 123 (157)
..+++.......
T Consensus 108 ~~~L~~~~~~~~ 119 (388)
T COG0426 108 ARFLKGFYHDPE 119 (388)
T ss_pred HHHHHHhcCCcc
Confidence 999888766554
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.76 E-value=8.1e-08 Score=73.32 Aligned_cols=85 Identities=26% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc
Q 031588 20 EGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT 99 (157)
Q Consensus 20 ~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~ 99 (157)
...+|+|+++| .+|++|+.++.+||+|+......................+|+|++||.|.||++.-.......
T Consensus 3 ~~~~m~itwlG------ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~ 76 (258)
T COG2220 3 SAEDMKITWLG------HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRT 76 (258)
T ss_pred CCcCceEEEec------ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhc
Confidence 34689999999 889999999999999999854322111000011233567999999999999997655444332
Q ss_pred CCCceE-EechHH
Q 031588 100 TFSGRV-FMTHAT 111 (157)
Q Consensus 100 ~~~~~i-~~~~~~ 111 (157)
. +.++ +.+...
T Consensus 77 ~-~~~~~~~p~~~ 88 (258)
T COG2220 77 N-KAPVVVVPLGA 88 (258)
T ss_pred C-CCcEEEeHHHH
Confidence 2 3444 444443
No 41
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.75 E-value=7.1e-08 Score=76.93 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCCccccEEEEEE-CCeEEEEec----CCCCC-------------cCCCCC-CCCCCC-------CCCC
Q 031588 21 GDQLTIIPLGAGNEVGRSCVYMSY-KGKTILFDC----GIHPA-------------YSGMAA-LPYFDE-------IDPS 74 (157)
Q Consensus 21 ~~~~~i~~lg~~~~~~~~~~li~~-~~~~iLiD~----G~~~~-------------~~~~~~-~~~~~~-------~~~~ 74 (157)
.+.+++++|| .++++|+. ++.+||||. |.... ..+... ++.++. ....
T Consensus 35 ~~~~~~~wlG------~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~ 108 (355)
T PRK11709 35 PGTFAMWWLG------CTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIR 108 (355)
T ss_pred CCcEEEEEec------ceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCC
Confidence 3678999997 67799987 578899994 21000 000000 011111 1346
Q ss_pred CccEEEecCCchhhhC--ChhHHHhhcCCCceEEechHHHHHHHH
Q 031588 75 AIDVLLITHFHLDHAA--SLPYFLEKTTFSGRVFMTHATKAIYKL 117 (157)
Q Consensus 75 ~i~~I~iTH~H~DH~g--g~~~l~~~~~~~~~i~~~~~~~~~~~~ 117 (157)
+||+||+||.|.||+. .+..+.+..+..++++++....++++.
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~ 153 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIG 153 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHh
Confidence 8999999999999984 334444433224668888877665443
No 42
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.67 E-value=6e-08 Score=69.03 Aligned_cols=52 Identities=33% Similarity=0.446 Sum_probs=35.6
Q ss_pred EEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCC
Q 031588 25 TIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAAS 91 (157)
Q Consensus 25 ~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg 91 (157)
+|+++| .+|++|+.++.+||+|+.... ... .....++|+|++||.|.||+..
T Consensus 1 ~It~lg------ha~~~ie~~g~~iliDP~~~~--~~~-------~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 1 KITWLG------HASFLIETGGKRILIDPWFSS--VGY-------APPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EEEEEE------TTEEEEEETTEEEEES--TTT----T--------TSS-B-SEEEESSSSTTT-CC
T ss_pred CEEEEE------eeEEEEEECCEEEEECCCCCc--cCc-------ccccCCCCEEEECCCccccCCh
Confidence 467777 889999999999999999521 001 1123789999999999999876
No 43
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.67 E-value=1.7e-08 Score=76.77 Aligned_cols=73 Identities=15% Similarity=0.037 Sum_probs=48.6
Q ss_pred ccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCCceEEech
Q 031588 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTH 109 (157)
Q Consensus 37 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~ 109 (157)
+++||+..++.++.+|++.....+.+........-...++.+||.||.|+||+||+..+.+.+.+++++|...
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~ 85 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA 85 (265)
T ss_pred ceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC
Confidence 6889998866666666554221111111111001145689999999999999999999998865568888774
No 44
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.50 E-value=1.6e-07 Score=72.18 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=47.8
Q ss_pred EEECCeEEEEe-cCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc------CCCceEEechHHHHH
Q 031588 42 MSYKGKTILFD-CGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT------TFSGRVFMTHATKAI 114 (157)
Q Consensus 42 i~~~~~~iLiD-~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~------~~~~~i~~~~~~~~~ 114 (157)
+......|||| +|.... .. .+.+...++.|||||.|.||++|++.+.-.. ..+..||+++++.+.
T Consensus 14 ~~~~~~~ilfD~ag~g~~-----~~---l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ 85 (277)
T TIGR02650 14 IIYSPEEIIFDAAEEGSS-----TL---GGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAA 85 (277)
T ss_pred EEECchhheehhhcccch-----hH---HhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHH
Confidence 34456679999 886321 11 1234568999999999999999996554311 113559999998887
Q ss_pred HHHhH
Q 031588 115 YKLLL 119 (157)
Q Consensus 115 ~~~~~ 119 (157)
.+.++
T Consensus 86 ve~~~ 90 (277)
T TIGR02650 86 EEETS 90 (277)
T ss_pred HHHHH
Confidence 77443
No 45
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.06 E-value=1.9e-06 Score=64.94 Aligned_cols=68 Identities=26% Similarity=0.411 Sum_probs=46.0
Q ss_pred EEEEEecCCC-CccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCC------------CCCCCCccEEEecCCchhhhC
Q 031588 24 LTIIPLGAGN-EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD------------EIDPSAIDVLLITHFHLDHAA 90 (157)
Q Consensus 24 ~~i~~lg~~~-~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~------------~~~~~~i~~I~iTH~H~DH~g 90 (157)
|+|.+++..+ ++..-|.++++.+-.||||+|-+....+...-+... ..-.++.+.|.|||.|+||..
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 6788887655 344567899999999999999865433221111000 112357889999999999986
Q ss_pred C
Q 031588 91 S 91 (157)
Q Consensus 91 g 91 (157)
-
T Consensus 81 P 81 (304)
T COG2248 81 P 81 (304)
T ss_pred c
Confidence 5
No 46
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=98.01 E-value=8e-06 Score=49.06 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=40.3
Q ss_pred cEEEEEECCeEEEE-ecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCc-hhhhCC
Q 031588 38 SCVYMSYKGKTILF-DCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH-LDHAAS 91 (157)
Q Consensus 38 ~~~li~~~~~~iLi-D~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H-~DH~gg 91 (157)
.|+++..++.+.|| +||.+ .++.-...+++..+++.||+|+.+ +|++||
T Consensus 13 p~l~l~~d~~rYlFGn~gEG-----tQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEG-----TQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcH-----HHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 88999999999999 99983 333322346778899999999999 999987
No 47
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.99 E-value=2e-05 Score=62.39 Aligned_cols=94 Identities=23% Similarity=0.169 Sum_probs=60.4
Q ss_pred EEEEecCCCCc---cccEEEEEEC--CeEEEEecCCCCCc-CC------CCCCCCCC---------------CCCCCCcc
Q 031588 25 TIIPLGAGNEV---GRSCVYMSYK--GKTILFDCGIHPAY-SG------MAALPYFD---------------EIDPSAID 77 (157)
Q Consensus 25 ~i~~lg~~~~~---~~~~~li~~~--~~~iLiD~G~~~~~-~~------~~~~~~~~---------------~~~~~~i~ 77 (157)
++.+||.+++. +.+++|++.. +..+-+|+|..... .. ........ .+-...|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 57788876643 5788999764 56788999984321 00 00000000 00114789
Q ss_pred EEEecCCchhhhCChhHHHhhcC----CCceEEechHHHHHHHHh
Q 031588 78 VLLITHFHLDHAASLPYFLEKTT----FSGRVFMTHATKAIYKLL 118 (157)
Q Consensus 78 ~I~iTH~H~DH~gg~~~l~~~~~----~~~~i~~~~~~~~~~~~~ 118 (157)
..||||.|.||+.|+..-..... .+-+||+.+.|.+.++..
T Consensus 82 ~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h 126 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNH 126 (335)
T ss_pred eEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHc
Confidence 99999999999999864433331 256799999999987754
No 48
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.66 E-value=1.5e-05 Score=65.16 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=50.9
Q ss_pred ccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhc---CCCceEEechHH
Q 031588 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT---TFSGRVFMTHAT 111 (157)
Q Consensus 37 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~---~~~~~i~~~~~~ 111 (157)
.|..+|+.+...|+||+=..........-.+......+.|.+|+-||.|.||+||+.-+.+.- .-+++|.++.+-
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GF 203 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGF 203 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhH
Confidence 477889999999999987643211110001112345678999999999999999998886542 125778877653
No 49
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.54 E-value=0.0014 Score=47.43 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=48.4
Q ss_pred eEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcCCC
Q 031588 23 QLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFS 102 (157)
Q Consensus 23 ~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~ 102 (157)
-.....+......+-||++...++.+||||+-.-.. ....++ ....-+++|++||. ||+.....+.+.+ .
T Consensus 9 l~~Ws~fn~~~n~dfng~~~~~p~GnilIDP~~ls~----~~~~~l--~a~ggv~~IvLTn~--dHvR~A~~ya~~~--~ 78 (199)
T PF14597_consen 9 LFSWSWFNEARNLDFNGHAWRRPEGNILIDPPPLSA----HDWKHL--DALGGVAWIVLTNR--DHVRAAEDYAEQT--G 78 (199)
T ss_dssp EEEEEEEETTTTEEEEEEEE--TT--EEES-----H----HHHHHH--HHTT--SEEE-SSG--GG-TTHHHHHHHS---
T ss_pred cchhhhcChhhccCceeEEEEcCCCCEEecCccccH----HHHHHH--HhcCCceEEEEeCC--hhHhHHHHHHHHh--C
Confidence 344556666666788999999999999999886221 111111 22357899999975 6999999999987 6
Q ss_pred ceEEechHHHHHH
Q 031588 103 GRVFMTHATKAIY 115 (157)
Q Consensus 103 ~~i~~~~~~~~~~ 115 (157)
++||++..+++.+
T Consensus 79 a~i~~p~~d~~~~ 91 (199)
T PF14597_consen 79 AKIYGPAADAAQF 91 (199)
T ss_dssp -EEEEEGGGCCC-
T ss_pred CeeeccHHHHhhC
Confidence 9999998877543
No 50
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=95.71 E-value=0.0062 Score=46.89 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCccEEEecCCchhhhCChhHHHhhcC--CCceEEechHHHHHHHHhHHHHH
Q 031588 74 SAIDVLLITHFHLDHAASLPYFLEKTT--FSGRVFMTHATKAIYKLLLTDYV 123 (157)
Q Consensus 74 ~~i~~I~iTH~H~DH~gg~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 123 (157)
..|+..+|||.|.||+.|+-.-..... .+-+||+...+.+.++...-.++
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~l 162 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWL 162 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhccc
Confidence 579999999999999999744332221 14579999999998877654433
No 51
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=95.53 E-value=0.0082 Score=51.59 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=44.9
Q ss_pred EEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhh
Q 031588 26 IIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98 (157)
Q Consensus 26 i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~ 98 (157)
.++|++|. +.+.|+.+++.+||+|-|...... ++.+ -....+||+|++||.-.|.++|+..|+++
T Consensus 40 cYIfpGg~---gdaALFavnGf~iLv~GgserKS~----fwkl-VrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 40 CYIFPGGR---GDAALFAVNGFNILVNGGSERKSC----FWKL-VRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred EEECCCCC---CcceeEeecceEEeecCCcccccc----hHHH-HHHHhhhhhhhhcccccCccccchHHHHH
Confidence 55666555 355667778889999988632111 0011 12456899999999999999999998764
No 52
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=95.51 E-value=0.0077 Score=43.51 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.5
Q ss_pred ccEEEEEE--CCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHhhcC
Q 031588 37 RSCVYMSY--KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT 100 (157)
Q Consensus 37 ~~~~li~~--~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~~~~ 100 (157)
+-.|++-. .+.++|||+-........+. ++..+ -++.+.+.||.|.||+-|...+...++
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~ql---ikdLg-l~LiYa~NTH~HADHiTGtg~Lkt~~p 82 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQL---IKDLG-LDLIYALNTHVHADHITGTGLLKTLLP 82 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHH---HHhcC-ceeeeeecceeecccccccchHHHhcc
Confidence 45566643 35789999887432222211 12222 367789999999999999998877653
No 53
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=95.50 E-value=0.2 Score=42.18 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=70.4
Q ss_pred CCCCeEEEEEecCCCCccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCC--------CCccEEEecCCchhhhC
Q 031588 19 REGDQLTIIPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLLITHFHLDHAA 90 (157)
Q Consensus 19 ~~~~~~~i~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~--------~~i~~I~iTH~H~DH~g 90 (157)
.+.+.+++.+++ .+.+.++|.++..=.+..|+++|...... .+-...+...+ .++-++.++|.|.||.+
T Consensus 146 ~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~sree--Drhl~aae~P~~~~dvli~estygv~~h~~r~~re~ 222 (668)
T KOG1137|consen 146 VEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDYSREE--DRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREG 222 (668)
T ss_pred cccCCeEEEeec-cchhhhheeeeeeeceEEEEeccccchhh--cccccchhCCCCCccEEEEEeeeeEEecCchHHhhh
Confidence 445568899998 44455566655444567889999754221 11111111111 35667889999999999
Q ss_pred ChhHHHhhcCCC-----ceEEechHHHHHHHHhHHHHHHhhhcc
Q 031588 91 SLPYFLEKTTFS-----GRVFMTHATKAIYKLLLTDYVKVSKVS 129 (157)
Q Consensus 91 g~~~l~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (157)
.+.++......+ .|+++...+.+++..+...|.......
T Consensus 223 rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~ 266 (668)
T KOG1137|consen 223 RLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLR 266 (668)
T ss_pred hhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhh
Confidence 999998764434 678998888888887766666554433
No 54
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.023 Score=44.00 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=40.5
Q ss_pred ccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhHHHh
Q 031588 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (157)
Q Consensus 37 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~l~~ 97 (157)
++..++..++..+++|+|.+. + .-.++...+|+.+++||.|++|+|++..+..
T Consensus 95 ~~~tl~~d~~~v~v~~~gls~----l----ak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~ 147 (302)
T KOG4736|consen 95 GQITLVVDGGDVVVVDTGLSV----L----AKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ 147 (302)
T ss_pred cccceeecCCceEEEecCCch----h----hhcCcChhhcceeEEeccCcccccccccccC
Confidence 455667777888999999841 1 1125677899999999999999999976643
No 55
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=94.35 E-value=0.086 Score=43.76 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=32.3
Q ss_pred CccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHHHHHhHH
Q 031588 75 AIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLT 120 (157)
Q Consensus 75 ~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 120 (157)
...+-|+||+|.||..|+..-.. ..++|++..+..++...+.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~ 153 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS 153 (481)
T ss_pred ccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc
Confidence 67789999999999888654432 3449999999988776544
No 56
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=90.49 E-value=0.41 Score=36.76 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=37.9
Q ss_pred cccEEEEEECCeEEEEecCCCCCc-------CCCCCCCCCCCCCCCCccEEEecCCchhhhCCh
Q 031588 36 GRSCVYMSYKGKTILFDCGIHPAY-------SGMAALPYFDEIDPSAIDVLLITHFHLDHAASL 92 (157)
Q Consensus 36 ~~~~~li~~~~~~iLiD~G~~~~~-------~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~ 92 (157)
|.+|.++..++-.+|-|+=..... +++...+ ....++.++|.++++|.|+||...-
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp-~~~~~~p~~d~~~vsh~h~dhld~~ 149 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPP-MKLEDLPDLDFAVVSHDHYDHLDAD 149 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCc-hhhccCCCCceeccccccccccchH
Confidence 678898888888888776553211 1222222 1234678999999999999998653
No 57
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=80.84 E-value=0.33 Score=42.15 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCCCCCeEEEEEecCCC--CccccEEEEEECCeEEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhCChhH
Q 031588 17 VSREGDQLTIIPLGAGN--EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPY 94 (157)
Q Consensus 17 ~~~~~~~~~i~~lg~~~--~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~gg~~~ 94 (157)
...-+..+.+.+.+.+. .....+.+...+..+.++.||. +.+++.....+...+++.||+|-.+++-+||+|-
T Consensus 42 ~~~~~~~~~~~I~~~~~dt~~s~~~~~~~~~~~~~~~n~Ge-----g~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpG 116 (746)
T KOG2121|consen 42 LNPTNTIRYLQISGSGMDTQDSPLSVYLFDDRKRFIFNCGE-----GTQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPG 116 (746)
T ss_pred CCCCceEEEEEEecCcccccccchhhhhhcchhhhhhhhhH-----HHHHHHHHhhhhhhhhhheEeecccHHHhCCCcc
Confidence 33444456677777663 2233444455667789999997 3444333334567899999999999999999998
Q ss_pred HHhh---cCC--CceEEechHHHHHHHH
Q 031588 95 FLEK---TTF--SGRVFMTHATKAIYKL 117 (157)
Q Consensus 95 l~~~---~~~--~~~i~~~~~~~~~~~~ 117 (157)
+.-. .+. .+.++++.....++..
T Consensus 117 l~ltl~~~G~~g~~~l~gP~~l~~~l~~ 144 (746)
T KOG2121|consen 117 LLLTLADIGEPGPVVLHGPSDLNYILSA 144 (746)
T ss_pred ceeehhhcCCCCcccccCchhHHHHHHH
Confidence 8532 111 2345666665555443
No 58
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=41.34 E-value=15 Score=27.65 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=16.7
Q ss_pred CCchhhhCChhHHHhhcCCCceEEe
Q 031588 83 HFHLDHAASLPYFLEKTTFSGRVFM 107 (157)
Q Consensus 83 H~H~DH~gg~~~l~~~~~~~~~i~~ 107 (157)
|+|.||+.++..+.+..+. .+||+
T Consensus 42 HSh~~Hl~al~~~a~~~gv-~~V~v 65 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQGV-KKVYV 65 (223)
T ss_dssp S--HHHHHHHHHHHHHTT--SEEEE
T ss_pred cccHHHHHHHHHHHHHcCC-CEEEE
Confidence 9999999999999987642 23654
No 59
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=40.04 E-value=15 Score=31.78 Aligned_cols=38 Identities=24% Similarity=0.458 Sum_probs=27.5
Q ss_pred EEEEecCCCCCcCCCCCCCCCCCCCCCCccEEEecCCchhhhC
Q 031588 48 TILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAA 90 (157)
Q Consensus 48 ~iLiD~G~~~~~~~~~~~~~~~~~~~~~i~~I~iTH~H~DH~g 90 (157)
.+|+|.|.. .+..+.+...+.-.++.|++-|.|+|-.-
T Consensus 421 ~VlvDnGsT-----eEDipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGST-----EEDIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCc-----ccccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 488999973 33344444456668899999999999765
No 60
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=27.03 E-value=48 Score=23.80 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEecCCch----hhhCChhHHHhhcCCCceEEe
Q 031588 78 VLLITHFHL----DHAASLPYFLEKTTFSGRVFM 107 (157)
Q Consensus 78 ~I~iTH~H~----DH~gg~~~l~~~~~~~~~i~~ 107 (157)
.|++||+|. .+...+.++.+.....+-+|+
T Consensus 83 ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~G 116 (172)
T COG0622 83 KIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFG 116 (172)
T ss_pred EEEEECCCccccccCHHHHHHHHHhcCCCEEEEC
Confidence 588999985 556666777666543444444
No 61
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=24.38 E-value=1.5e+02 Score=19.03 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCCccEEEecCCchhhhCChhHHHhhcCCCceEEechHHHHHHHHh
Q 031588 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLL 118 (157)
Q Consensus 73 ~~~i~~I~iTH~H~DH~gg~~~l~~~~~~~~~i~~~~~~~~~~~~~ 118 (157)
...++.|+|+|.-.+. +..+.+...++.++|+-+ +.++.+.+
T Consensus 11 ~~gv~lv~I~~g~~~~---~~~f~~~~~~p~~ly~D~-~~~lY~~l 52 (115)
T PF13911_consen 11 AAGVKLVVIGCGSPEG---IEKFCELTGFPFPLYVDP-ERKLYKAL 52 (115)
T ss_pred HcCCeEEEEEcCCHHH---HHHHHhccCCCCcEEEeC-cHHHHHHh
Confidence 3568899999887644 677776666678888754 56665544
No 62
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=23.60 E-value=22 Score=19.24 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=12.9
Q ss_pred ecCCchhhhCChhHHHhh
Q 031588 81 ITHFHLDHAASLPYFLEK 98 (157)
Q Consensus 81 iTH~H~DH~gg~~~l~~~ 98 (157)
|-|.|.||.|---.|...
T Consensus 1 v~~yH~D~~GtP~~ltd~ 18 (41)
T PF03527_consen 1 VYYYHTDHLGTPQELTDE 18 (41)
T ss_pred CeEEecCCCCCcHHHHHh
Confidence 357899998776666554
No 63
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=20.85 E-value=1.2e+02 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=18.2
Q ss_pred cccEEEEEECCeEEEEecCCCCC
Q 031588 36 GRSCVYMSYKGKTILFDCGIHPA 58 (157)
Q Consensus 36 ~~~~~li~~~~~~iLiD~G~~~~ 58 (157)
.+.+.+|+.++...|+|+|.+..
T Consensus 87 ~H~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 87 THLVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp EEEEEEEEETTEEEEE-SSSTTC
T ss_pred ceEEEEEEECCEEEEEeccCCCc
Confidence 46778889999999999999654
Done!