Query 031589
Match_columns 157
No_of_seqs 51 out of 53
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 22.5 28 0.00095 20.2 0.8 11 29-39 4-14 (29)
2 2bn5_B U1 small nuclear ribonu 17.7 57 0.0019 18.3 1.4 13 35-47 9-22 (26)
3 1g2b_A Spectrin alpha chain; c 15.3 26 0.00089 21.6 -0.5 8 148-155 54-61 (62)
4 3fbi_A Mediator of RNA polymer 12.9 61 0.0021 22.7 0.8 19 30-49 8-26 (84)
5 1i1j_A Melanoma derived growth 8.3 59 0.002 22.9 -0.7 7 149-155 59-65 (108)
6 1rr7_A Middle operon regulator 7.9 95 0.0032 22.7 0.3 13 107-119 62-74 (129)
7 2lx7_A GAS-7, growth arrest-sp 7.2 87 0.003 19.8 -0.2 8 148-155 37-44 (60)
8 2jmc_A Spectrin alpha chain, b 7.1 1.2E+02 0.004 19.4 0.4 7 148-154 24-30 (77)
9 1awj_A ITK; transferase, regul 6.9 1.3E+02 0.0046 19.0 0.6 7 148-154 53-59 (77)
10 2ke9_A Caskin-2; SH3 domain, A 6.8 87 0.003 20.7 -0.3 8 148-155 52-59 (83)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=22.53 E-value=28 Score=20.21 Aligned_cols=11 Identities=64% Similarity=0.917 Sum_probs=8.8
Q ss_pred ccccccccCCC
Q 031589 29 TGIFASILSPP 39 (157)
Q Consensus 29 sgiF~SIFppp 39 (157)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 45899999975
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=17.72 E-value=57 Score=18.26 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=7.5
Q ss_pred ccC-CCCccCCCCC
Q 031589 35 ILS-PPSTAMGRNS 47 (157)
Q Consensus 35 IFp-pps~v~Gr~s 47 (157)
||+ ||+..+||.-
T Consensus 9 mfsvppppi~gr~n 22 (26)
T 2bn5_B 9 MFSVPPPPILGRGX 22 (26)
T ss_dssp CCSCCCCSCCCCC-
T ss_pred eecCCCCCcccCCc
Confidence 555 4456778764
No 3
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=15.34 E-value=26 Score=21.58 Aligned_cols=8 Identities=25% Similarity=1.236 Sum_probs=6.4
Q ss_pred cccCCccc
Q 031589 148 GNWWQGSL 155 (157)
Q Consensus 148 GnWWqGsl 155 (157)
++||+|.|
T Consensus 54 ~~Ww~g~~ 61 (62)
T 1g2b_A 54 KDWWKVEV 61 (62)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 58999865
No 4
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=12.89 E-value=61 Score=22.75 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=9.6
Q ss_pred cccccccCCCCccCCCCCch
Q 031589 30 GIFASILSPPSTAMGRNSSN 49 (157)
Q Consensus 30 giF~SIFppps~v~Gr~s~~ 49 (157)
-.++|+||||+. --|.-+.
T Consensus 8 n~isSlfPpPPP-f~K~FT~ 26 (84)
T 3fbi_A 8 NEVSSLYPPPPP-YVKFFTQ 26 (84)
T ss_dssp ----CCSCCCCG-GGGGCCH
T ss_pred cccccCCCCCCc-hhhhcCH
Confidence 467899998873 3444433
No 5
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=8.31 E-value=59 Score=22.93 Aligned_cols=7 Identities=43% Similarity=1.161 Sum_probs=5.7
Q ss_pred ccCCccc
Q 031589 149 NWWQGSL 155 (157)
Q Consensus 149 nWWqGsl 155 (157)
+||+|.+
T Consensus 59 dWW~G~~ 65 (108)
T 1i1j_A 59 LFWGGSV 65 (108)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 6999865
No 6
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=7.92 E-value=95 Score=22.66 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.2
Q ss_pred eeeccccccCCCC
Q 031589 107 LYYGGQDIYSHSL 119 (157)
Q Consensus 107 iyYGGqd~Ys~~~ 119 (157)
-||||+.+|-|..
T Consensus 62 ~~~gG~~iYIPk~ 74 (129)
T 1rr7_A 62 KHLGGGQVYIPRG 74 (129)
T ss_dssp HHHCSSCCCCCCS
T ss_pred HHHCCeeEEeeCC
Confidence 3789999998753
No 7
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=7.19 E-value=87 Score=19.80 Aligned_cols=8 Identities=50% Similarity=1.739 Sum_probs=6.0
Q ss_pred cccCCccc
Q 031589 148 GNWWQGSL 155 (157)
Q Consensus 148 GnWWqGsl 155 (157)
.+||.|.+
T Consensus 37 ~~Ww~g~~ 44 (60)
T 2lx7_A 37 GGWWEGEK 44 (60)
T ss_dssp TSCEEEEC
T ss_pred CCeEEEEe
Confidence 37999864
No 8
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=7.06 E-value=1.2e+02 Score=19.39 Aligned_cols=7 Identities=29% Similarity=1.327 Sum_probs=5.6
Q ss_pred cccCCcc
Q 031589 148 GNWWQGS 154 (157)
Q Consensus 148 GnWWqGs 154 (157)
++||.|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 5899985
No 9
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=6.87 E-value=1.3e+02 Score=18.96 Aligned_cols=7 Identities=29% Similarity=1.118 Sum_probs=5.8
Q ss_pred cccCCcc
Q 031589 148 GNWWQGS 154 (157)
Q Consensus 148 GnWWqGs 154 (157)
++||+|.
T Consensus 53 ~~Ww~~~ 59 (77)
T 1awj_A 53 IHWWRVQ 59 (77)
T ss_dssp SSBCCCC
T ss_pred CCCEEEE
Confidence 5899985
No 10
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=6.80 E-value=87 Score=20.67 Aligned_cols=8 Identities=25% Similarity=0.991 Sum_probs=6.0
Q ss_pred cccCCccc
Q 031589 148 GNWWQGSL 155 (157)
Q Consensus 148 GnWWqGsl 155 (157)
.+||+|.+
T Consensus 52 ~gWw~G~~ 59 (83)
T 2ke9_A 52 DGRWKGHI 59 (83)
T ss_dssp SSCEEEEE
T ss_pred CCeEEEEE
Confidence 36999864
Done!