Query 031590
Match_columns 157
No_of_seqs 138 out of 1284
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 2.8E-48 6.2E-53 349.5 8.6 151 1-154 206-364 (550)
2 PLN03167 Chaperonin-60 beta su 100.0 7.3E-38 1.6E-42 287.7 12.9 150 1-153 247-403 (600)
3 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-35 4E-40 268.9 12.4 151 1-154 193-350 (546)
4 PRK12852 groEL chaperonin GroE 100.0 6.1E-35 1.3E-39 265.0 12.9 151 1-154 193-350 (545)
5 PTZ00114 Heat shock protein 60 100.0 1.2E-33 2.7E-38 257.1 12.4 151 1-154 204-362 (555)
6 CHL00093 groEL chaperonin GroE 100.0 3.8E-33 8.1E-38 252.6 11.7 150 1-154 192-349 (529)
7 PRK12851 groEL chaperonin GroE 100.0 9.5E-32 2E-36 244.3 12.5 151 1-154 193-350 (541)
8 TIGR02348 GroEL chaperonin Gro 100.0 1.2E-31 2.7E-36 242.5 12.6 151 1-154 191-348 (524)
9 PRK12850 groEL chaperonin GroE 100.0 1.5E-31 3.3E-36 243.1 12.6 151 1-154 193-350 (544)
10 PRK00013 groEL chaperonin GroE 100.0 2E-31 4.3E-36 242.4 13.3 150 1-153 192-348 (542)
11 PRK12849 groEL chaperonin GroE 100.0 1.6E-30 3.5E-35 236.4 12.6 150 1-153 192-348 (542)
12 cd03344 GroEL GroEL_like type 100.0 1.2E-29 2.7E-34 229.5 13.1 151 1-154 190-347 (520)
13 COG0459 GroL Chaperonin GroEL 99.9 3.2E-27 6.9E-32 214.8 0.1 129 1-141 199-332 (524)
14 cd03338 TCP1_delta TCP-1 (CTT 99.5 1.6E-14 3.5E-19 130.2 8.6 120 1-132 203-345 (515)
15 TIGR02343 chap_CCT_epsi T-comp 99.5 1.4E-14 3E-19 131.7 7.8 125 1-141 223-373 (532)
16 cd03339 TCP1_epsilon TCP-1 (CT 99.5 1.8E-14 3.9E-19 130.4 8.2 125 1-141 219-369 (526)
17 cd03343 cpn60 cpn60 chaperonin 99.5 9.2E-14 2E-18 125.2 8.9 121 1-142 211-360 (517)
18 TIGR02345 chap_CCT_eta T-compl 99.5 3.5E-14 7.6E-19 128.5 5.8 113 1-130 211-348 (522)
19 cd03342 TCP1_zeta TCP-1 (CTT o 99.5 3.5E-14 7.7E-19 127.6 5.1 117 1-142 206-326 (484)
20 TIGR02342 chap_CCT_delta T-com 99.5 1.4E-13 2.9E-18 124.6 7.8 120 1-131 204-346 (517)
21 TIGR02346 chap_CCT_theta T-com 99.4 1.4E-13 3.1E-18 125.0 6.8 108 7-131 234-346 (531)
22 TIGR02339 thermosome_arch ther 99.4 4.7E-13 1E-17 120.9 7.7 121 1-142 214-363 (519)
23 PTZ00212 T-complex protein 1 s 99.4 1.3E-13 2.7E-18 125.3 2.2 126 2-139 210-366 (533)
24 TIGR02340 chap_CCT_alpha T-com 99.3 1.2E-13 2.6E-18 125.5 -0.2 121 1-142 210-365 (536)
25 cd03335 TCP1_alpha TCP-1 (CTT 99.3 4.1E-12 8.8E-17 115.2 8.7 121 1-141 206-360 (527)
26 cd00309 chaperonin_type_I_II c 99.3 1.2E-11 2.6E-16 109.9 10.0 100 1-138 201-306 (464)
27 TIGR02341 chap_CCT_beta T-comp 99.3 3.7E-12 8E-17 115.6 6.1 119 2-130 199-343 (519)
28 TIGR02347 chap_CCT_zeta T-comp 99.3 7.3E-12 1.6E-16 114.1 7.8 121 1-142 210-369 (531)
29 cd03336 TCP1_beta TCP-1 (CTT o 99.3 3.3E-12 7.2E-17 115.6 5.4 120 2-131 198-343 (517)
30 cd03333 chaperonin_like chaper 99.3 1.7E-11 3.6E-16 98.1 7.5 94 1-132 65-160 (209)
31 cd03341 TCP1_theta TCP-1 (CTT 99.2 6E-11 1.3E-15 106.4 9.6 100 13-140 207-310 (472)
32 cd03340 TCP1_eta TCP-1 (CTT or 99.2 2.2E-10 4.8E-15 103.7 11.5 135 1-155 210-387 (522)
33 PF00118 Cpn60_TCP1: TCP-1/cpn 99.1 2.2E-10 4.8E-15 100.7 8.7 116 3-139 180-323 (485)
34 TIGR02344 chap_CCT_gamma T-com 99.0 9.4E-10 2E-14 99.7 6.8 113 13-141 221-363 (525)
35 cd03337 TCP1_gamma TCP-1 (CTT 98.9 3.7E-09 8E-14 95.1 6.5 102 2-140 215-321 (480)
36 cd03334 Fab1_TCP TCP-1 like do 96.8 0.0074 1.6E-07 50.7 8.4 101 17-131 79-198 (261)
37 KOG0357 Chaperonin complex com 90.3 0.27 5.9E-06 44.0 3.2 67 45-128 151-219 (400)
38 COG1880 CdhB CO dehydrogenase/ 76.3 2.6 5.7E-05 34.1 2.8 62 22-83 9-71 (170)
39 KOG0360 Chaperonin complex com 69.5 3.2 6.8E-05 38.8 2.0 80 46-140 282-370 (545)
40 TIGR00362 DnaA chromosomal rep 55.0 32 0.00069 30.2 5.7 76 22-104 197-285 (405)
41 COG1358 RPL8A Ribosomal protei 52.1 13 0.00027 28.2 2.3 34 50-83 44-79 (116)
42 PF07002 Copine: Copine; Inte 49.5 24 0.00052 27.4 3.6 31 26-56 112-142 (146)
43 PRK06893 DNA replication initi 44.5 37 0.0008 27.5 4.1 75 21-101 88-175 (229)
44 PF01985 CRS1_YhbY: CRS1 / Yhb 43.0 48 0.001 23.2 4.0 62 46-110 13-75 (84)
45 PF12694 MoCo_carrier: Putativ 42.6 38 0.00083 26.8 3.7 70 24-98 65-142 (145)
46 KOG0359 Chaperonin complex com 37.0 33 0.00072 32.0 3.0 44 94-139 311-357 (520)
47 COG1847 Jag Predicted RNA-bind 36.9 18 0.00039 30.2 1.2 42 64-108 119-161 (208)
48 cd01459 vWA_copine_like VWA Co 36.8 43 0.00094 28.4 3.5 36 26-61 160-195 (254)
49 PRK13600 putative ribosomal pr 36.7 31 0.00067 24.7 2.2 34 49-83 29-62 (84)
50 PRK14088 dnaA chromosomal repl 36.4 87 0.0019 28.2 5.6 74 24-104 194-280 (440)
51 PRK00149 dnaA chromosomal repl 36.1 91 0.002 27.9 5.6 75 23-104 210-297 (450)
52 PF01808 AICARFT_IMPCHas: AICA 35.7 35 0.00076 30.1 2.8 87 51-147 194-306 (315)
53 PRK06620 hypothetical protein; 35.3 48 0.001 26.8 3.4 69 24-101 85-161 (214)
54 PRK07106 5-aminoimidazole-4-ca 35.1 45 0.00097 30.4 3.5 88 51-147 136-251 (390)
55 COG0459 GroL Chaperonin GroEL 34.4 2.7E+02 0.0059 26.0 8.6 94 21-130 229-340 (524)
56 PF14307 Glyco_tran_WbsX: Glyc 33.0 51 0.0011 28.6 3.4 52 7-59 143-199 (345)
57 PF00308 Bac_DnaA: Bacterial d 30.9 97 0.0021 25.0 4.5 80 21-105 94-184 (219)
58 KOG0358 Chaperonin complex com 29.8 82 0.0018 29.3 4.2 70 45-125 285-355 (534)
59 PRK14086 dnaA chromosomal repl 29.2 1.1E+02 0.0024 29.5 5.2 77 22-104 375-463 (617)
60 PRK13695 putative NTPase; Prov 29.0 2.1E+02 0.0045 21.7 5.9 12 47-58 124-135 (174)
61 PRK13809 orotate phosphoribosy 28.8 35 0.00076 27.9 1.6 66 3-82 30-98 (206)
62 cd02685 MIT_C MIT_C; domain fo 28.3 63 0.0014 25.6 2.9 98 8-141 11-113 (148)
63 TIGR02918 accessory Sec system 25.7 1.2E+02 0.0025 27.9 4.5 57 3-60 142-221 (500)
64 PF03103 DUF243: Domain of unk 25.7 57 0.0012 24.1 2.1 21 63-83 20-41 (97)
65 PF04810 zf-Sec23_Sec24: Sec23 25.3 40 0.00086 20.5 1.0 12 5-16 9-21 (40)
66 COG4148 ModC ABC-type molybdat 24.8 64 0.0014 28.9 2.6 42 20-61 142-191 (352)
67 COG2089 SpsE Sialic acid synth 24.4 1E+02 0.0022 27.7 3.8 84 22-113 146-238 (347)
68 COG3959 Transketolase, N-termi 23.5 87 0.0019 26.8 3.1 26 35-60 214-242 (243)
69 cd03340 TCP1_eta TCP-1 (CTT or 23.1 42 0.00091 30.7 1.2 59 47-109 244-312 (522)
70 KOG0363 Chaperonin complex com 22.7 37 0.00081 31.3 0.8 55 66-127 289-344 (527)
71 PRK05583 ribosomal protein L7A 22.0 80 0.0017 23.1 2.3 15 50-64 34-48 (104)
72 PRK13601 putative L7Ae-like ri 21.8 83 0.0018 22.2 2.3 21 47-67 21-42 (82)
73 KOG0230 Phosphatidylinositol-4 21.6 1.8E+02 0.0038 31.2 5.3 98 16-129 392-509 (1598)
74 PF14242 DUF4342: Domain of un 21.0 1E+02 0.0022 22.0 2.5 18 122-139 29-46 (84)
75 TIGR01166 cbiO cobalt transpor 20.8 1.3E+02 0.0028 23.0 3.4 39 22-60 143-188 (190)
76 COG4819 EutA Ethanolamine util 20.2 1.3E+02 0.0028 27.7 3.6 32 48-79 406-437 (473)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-48 Score=349.53 Aligned_cols=151 Identities=28% Similarity=0.394 Sum_probs=148.0
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|+|||||+|||| |+++++++|||||++|++|+||+++++|+|+| +.+..+||+||||||++|||++||+||++++++
T Consensus 206 mkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glq 285 (550)
T KOG0356|consen 206 MKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQ 285 (550)
T ss_pred ccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhcccee
Confidence 899999999999 99999999999999999999999999999999 778889999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec----cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHH
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHR 152 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~----~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~q 152 (157)
|| ||+| ||||+|++.|+|||++|||+++++ ++|+.+++++||.|.++++|||+|.++.|.+++++++.||+|
T Consensus 286 V~AvKap---gfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeq 362 (550)
T KOG0356|consen 286 VVAVKAP---GFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQ 362 (550)
T ss_pred EEEEecC---CCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHH
Confidence 99 9999 999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred hh
Q 031590 153 FF 154 (157)
Q Consensus 153 i~ 154 (157)
|-
T Consensus 363 ik 364 (550)
T KOG0356|consen 363 IK 364 (550)
T ss_pred HH
Confidence 85
No 2
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=287.68 Aligned_cols=150 Identities=23% Similarity=0.348 Sum_probs=145.8
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||+|||| ||+++|..+|+||+||++|.+|++.++++|+| +.+.++||||+|++|++++|++|++||++|.++
T Consensus 247 ~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~ 326 (600)
T PLN03167 247 MQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLK 326 (600)
T ss_pred EEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccce
Confidence 579999999999 99999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
+| ||+| +||++|++.|+|||++|||+++++ +++++++.++||+|.++++++|+|+|++|.|+++.+++|+.+|
T Consensus 327 i~aVk~p---~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i 403 (600)
T PLN03167 327 IAALKAP---GFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQI 403 (600)
T ss_pred EEEEEcc---cCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHH
Confidence 99 9999 999999999999999999999997 5889999999999999999999999999999999999999886
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-35 Score=268.90 Aligned_cols=151 Identities=26% Similarity=0.400 Sum_probs=146.2
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||+|||| +++++|.++++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~ 272 (546)
T PRK14104 193 MQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLK 272 (546)
T ss_pred EEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceee
Confidence 579999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
|| ||+| +||++|++.|+|||++|||+++++ .+++++++++||+|.++++++++|++++|.++++++++|+++|
T Consensus 273 i~av~~~---~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l 349 (546)
T PRK14104 273 VAAVKAP---GFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQI 349 (546)
T ss_pred EEEEecc---CCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999998 6689999999999999999999999999999999999999987
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 350 ~ 350 (546)
T PRK14104 350 K 350 (546)
T ss_pred H
Confidence 4
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.1e-35 Score=265.03 Aligned_cols=151 Identities=26% Similarity=0.410 Sum_probs=146.0
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||+|||| +|+++|.++++||+||++|.+|+++++++|+| +.+.++||||+|++|+++||++|+.||++|+++
T Consensus 193 ~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~ 272 (545)
T PRK12852 193 MKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLK 272 (545)
T ss_pred EEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||+| +||++|+..|+|||++|||+++++ .+++++++++||+|.++++++++|++++|.++++.|+.|+++|
T Consensus 273 i~av~~~---~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l 349 (545)
T PRK12852 273 VAAVKAP---GFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQI 349 (545)
T ss_pred EEEEecC---CcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999996 5789999999999999999999999999999999999999987
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 350 ~ 350 (545)
T PRK12852 350 K 350 (545)
T ss_pred H
Confidence 4
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.2e-33 Score=257.11 Aligned_cols=151 Identities=33% Similarity=0.473 Sum_probs=145.3
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||+|||| ||+++|..+++||+||++|.+|+++++++|+| +.+.++||+|+|++|+++||+.|+.|+++|+++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~ 283 (555)
T PTZ00114 204 MSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLK 283 (555)
T ss_pred EEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceE
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec----cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHH
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG----ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHR 152 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~----~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~q 152 (157)
++ ||.| +||++|++.|+|||.+|||+++++ ..+++++.++||+|++|++++++|++++|.+++++|++|+++
T Consensus 284 i~avk~~---~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~ 360 (555)
T PTZ00114 284 VCAVKAP---GFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVEL 360 (555)
T ss_pred EEEEecC---CCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHH
Confidence 99 9999 999999999999999999999998 467889999999999999999999999999999999999987
Q ss_pred hh
Q 031590 153 FF 154 (157)
Q Consensus 153 i~ 154 (157)
+-
T Consensus 361 l~ 362 (555)
T PTZ00114 361 LR 362 (555)
T ss_pred HH
Confidence 73
No 6
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.8e-33 Score=252.60 Aligned_cols=150 Identities=27% Similarity=0.415 Sum_probs=142.7
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccch-HHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcc
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSK-NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQN 76 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~-~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l 76 (157)
|.||+||+|||| +++++|+++|+||+||++|.+|+.. ++++|+| +.+.++||+|+|++|++++|++|++||++|++
T Consensus 192 ~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~ 271 (529)
T CHL00093 192 MRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIV 271 (529)
T ss_pred EEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccc
Confidence 579999999999 9999999999999999999999998 7999999 88999999999999999999999999999999
Q ss_pred eEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHH
Q 031590 77 KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHR 152 (157)
Q Consensus 77 ~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~q 152 (157)
+++ ||.| +||++||+.|+|||.+|||+++++ .+++++++++||+|.+++++++.|++++ .|+++.|+.|+++
T Consensus 272 ~i~avr~~---~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~ 347 (529)
T CHL00093 272 NVVAVRAP---GFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQ 347 (529)
T ss_pred eEEEEecC---CCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHH
Confidence 999 9999 999999999999999999999996 5789999999999999999999999998 7889999999987
Q ss_pred hh
Q 031590 153 FF 154 (157)
Q Consensus 153 i~ 154 (157)
+.
T Consensus 348 ~~ 349 (529)
T CHL00093 348 LR 349 (529)
T ss_pred HH
Confidence 53
No 7
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=9.5e-32 Score=244.33 Aligned_cols=151 Identities=27% Similarity=0.419 Sum_probs=145.1
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.+.||+|++++|+++||++|+.|+++|+++
T Consensus 193 ~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~ 272 (541)
T PRK12851 193 MQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 272 (541)
T ss_pred EEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCcee
Confidence 479999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||+| +||+.|++.|+|||.+|||+++++ .+++++++++||+|++++++++.|++++|.+++++++.|+++|
T Consensus 273 i~av~~p---~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l 349 (541)
T PRK12851 273 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQI 349 (541)
T ss_pred EEEEecC---ccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999996 5789999999999999999999999999999999999999887
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 350 ~ 350 (541)
T PRK12851 350 R 350 (541)
T ss_pred H
Confidence 4
No 8
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.97 E-value=1.2e-31 Score=242.50 Aligned_cols=151 Identities=28% Similarity=0.415 Sum_probs=144.9
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.+.||+|++++|+++||++|+.||++|+++
T Consensus 191 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~ 270 (524)
T TIGR02348 191 MQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLN 270 (524)
T ss_pred EEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccc
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||.| +||++|++.|+|||++|||+++++ ++++++++++||+|.++++++++|++++|.++++++..|++++
T Consensus 271 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l 347 (524)
T TIGR02348 271 VCAVKAP---GFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQI 347 (524)
T ss_pred eEEEECC---CccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999996 5789999999999999999999999999999999999998876
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 348 ~ 348 (524)
T TIGR02348 348 K 348 (524)
T ss_pred H
Confidence 3
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=1.5e-31 Score=243.13 Aligned_cols=151 Identities=28% Similarity=0.415 Sum_probs=145.2
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.+.||||++++|+++||++|+.|+++|+++
T Consensus 193 ~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~ 272 (544)
T PRK12850 193 MQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLK 272 (544)
T ss_pred EEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccce
Confidence 579999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||+| +||++|+..|+|||.+|||+++++ .+++++++++||+|.+++++++.|++++|.++++.+..||++|
T Consensus 273 ~~avk~p---~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l 349 (544)
T PRK12850 273 SVAVKAP---GFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQI 349 (544)
T ss_pred EEEEeCC---CcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999996 5789999999999999999999999999999999999999886
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 350 ~ 350 (544)
T PRK12850 350 R 350 (544)
T ss_pred H
Confidence 4
No 10
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=2e-31 Score=242.38 Aligned_cols=150 Identities=28% Similarity=0.420 Sum_probs=144.7
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
+.||+||.|||| +++++|..+++||+||++|.+|++.++++|+| +.+.+.||||++++|+++||++|+.|+++|+++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~ 271 (542)
T PRK00013 192 MQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLK 271 (542)
T ss_pred EEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccce
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||.| +||++|+..|+|||.+|||+++++ .+++++++++||+|.+++++++++++++|.++++.+..|++++
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l 348 (542)
T PRK00013 272 VVAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQI 348 (542)
T ss_pred EEEEecC---CcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999996 5789999999999999999999999999999999999999877
No 11
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=1.6e-30 Score=236.44 Aligned_cols=150 Identities=27% Similarity=0.410 Sum_probs=144.3
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|.||+||.|||| ++.++|..+++||+||++|.+|++.++++|+| +.+.+.||+|++++|+++||.+|+.|+++|.++
T Consensus 192 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~ 271 (542)
T PRK12849 192 MQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLK 271 (542)
T ss_pred EEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhcccc
Confidence 469999999999 99999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||.| +||++|+..|+|||.+|||+++++ .+++++++++||+|+++++++++|++++|.+++++|+.|++++
T Consensus 272 i~avr~~---~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l 348 (542)
T PRK12849 272 VAAVKAP---GFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQI 348 (542)
T ss_pred EEEEeCC---CccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999997 5788999999999999999999999999999999999999875
No 12
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.96 E-value=1.2e-29 Score=229.46 Aligned_cols=151 Identities=28% Similarity=0.420 Sum_probs=144.2
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
+.||+||.|||| +++++|..+++||+||++|..+++.++++|+| +.+.++||+|++++|+++||..|+.|+++|.++
T Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~ 269 (520)
T cd03344 190 MQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLK 269 (520)
T ss_pred EEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCce
Confidence 469999999999 99999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec---cccCCCCCCCCceeeEEEEeCCceEEEcCCCChHHHHHHHHHh
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG---ATNVSFMPLMLGSCKELLYQMTRWLSLVGLVASLLLKKDVHRF 153 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~---~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g~~~~I~~Rv~qi 153 (157)
++ ||.| +||+.|+..|+|||.+|||+++++ .++++++.++||+|++++++++++++++|.+++++|+.|++++
T Consensus 270 v~avk~~---~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l 346 (520)
T cd03344 270 VCAVKAP---GFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQI 346 (520)
T ss_pred EEEEeCC---CCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHH
Confidence 99 9999 999999999999999999999997 4788888899999999999999999999999999999999875
Q ss_pred h
Q 031590 154 F 154 (157)
Q Consensus 154 ~ 154 (157)
-
T Consensus 347 ~ 347 (520)
T cd03344 347 R 347 (520)
T ss_pred H
Confidence 3
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-27 Score=214.77 Aligned_cols=129 Identities=27% Similarity=0.337 Sum_probs=121.1
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
|+||+||+|||| +| .+++||+||++|+||+..++.+| | ..+.++||++|+||+++|+|++++.|+++++++
T Consensus 199 ~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~ 272 (524)
T COG0459 199 MVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGAN 272 (524)
T ss_pred EEecCCccCCCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999 88 68889999999999999999999 6 788889999999999999999999999999999
Q ss_pred EE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec-cccCCCCCCCCceeeEEEEeCCceEEEcCCC
Q 031590 78 VS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-ATNVSFMPLMLGSCKELLYQMTRWLSLVGLV 141 (157)
Q Consensus 78 v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g 141 (157)
+| |++| ||||+|+++|+|++|+||++|+++ +. + .+..+|.|+.+.+.+|.|.+..|.|
T Consensus 273 ~vvv~~~---gi~D~~~~~L~d~~Ilt~~~v~~~dl~-~--~l~~~~ga~~v~~~~d~t~~~~G~~ 332 (524)
T COG0459 273 VVVVKAP---GIDDLAKAYLEDIAILTGRRVKKEDLG-E--RLAKLGGAKIVSVLKDLTTIVLGEG 332 (524)
T ss_pred EEEEECC---CCcHHHHHHHHhhcceecceecchhhH-H--HHHHccCceEEeecccCceeecCcc
Confidence 77 9999 999999999999999999999988 53 2 7889999999999999999998875
No 14
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.54 E-value=1.6e-14 Score=130.18 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=102.1
Q ss_pred CccCCccccc----cc-CCCCC---------ceEEeeCceEEeecc-cccch-----HHHHHHH--HhhcCCceEEEecc
Q 031590 1 MKLKWRPVSS----YF-TNQKA---------KDCVLENPFLLILEN-MIVSK-----NIVEQAI--AQADSRPLLIVAED 58 (157)
Q Consensus 1 m~fdrGylSp----yf-td~~~---------~~~~le~p~IL~td~-kIs~~-----~~ilp~L--~~~~~rpLlIIAed 58 (157)
|.|++||.|| +| +|++- ++.++++++ ++++. ++.++ +++.+++ +.+.+.||+|++++
T Consensus 203 iv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~-~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~ 281 (515)
T cd03338 203 LVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI-VVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKS 281 (515)
T ss_pred EEEeccccCcCCCCccccCCcEEEEeccccccccccCceE-EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4699999995 58 98876 567888888 66774 66666 7889988 88889999999999
Q ss_pred cccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeCC
Q 031590 59 VEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMT 132 (157)
Q Consensus 59 v~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtkd 132 (157)
|++++++.++.|.+++ .+++ |+- .++..|+|||.+|||++++. +++++.++||+|+++.+++.
T Consensus 282 i~~~~v~~l~~~~l~~-~~I~av~~--------~~~~~LerIa~~tGa~ii~s--l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 282 ILRDAVSDLALHFLAK-LKIMVVKD--------IEREEIEFICKTIGCKPVAS--IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred cccccccHHHHHHHHH-CCceEEec--------CCHHHHHHHHHHHCCEEecc--cccCCHhhCCCCceEEEEEE
Confidence 9999999999999997 8888 883 56778999999999999986 66777889999999998774
No 15
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.54 E-value=1.4e-14 Score=131.71 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=104.0
Q ss_pred CccCCccccccc-CCCCC-----ceEEeeCceEEeeccc--ccchHHH-----------HHHH--HhhcCCceEEEeccc
Q 031590 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNIV-----------EQAI--AQADSRPLLIVAEDV 59 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~-----~~~~le~p~IL~td~k--Is~~~~i-----------lp~L--~~~~~rpLlIIAedv 59 (157)
|.||+||.+||| ++.++ ..++||.|++ -++.+ |++++++ .+++ +.+.|.||+|++++|
T Consensus 223 i~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~-~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I 301 (532)
T TIGR02343 223 IIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGF 301 (532)
T ss_pred EEEecCcCCCCCCeeecCCcEEEEEeecccccc-ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 468999999999 99888 8899999999 57888 8899888 8888 788899999999999
Q ss_pred ccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEE-----EeCCce
Q 031590 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-----YQMTRW 134 (157)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~-----vtkd~T 134 (157)
+++++..|.-|++.+ ||-+ |.++ |+|||.+|||++++. ++++++++||+|+++. .+++++
T Consensus 302 ~~~al~~L~~~~i~~-----v~~~-----~~~~---l~~Ia~~tGa~~i~~--l~~~~~~~LG~a~~v~~~~ig~~~~~~ 366 (532)
T TIGR02343 302 DDEANHLLLQNDLPA-----VRWV-----GGHE---LELIAIATGGRIVPR--FEELSEDKLGKAGLVREISFGTTKDRM 366 (532)
T ss_pred cHHHHHHHHHCCcEE-----EEcC-----CHHH---HHHHHHHhCCEEecc--cccCCHhHCcccceEEEEEecCCcceE
Confidence 999999999997663 6766 3333 999999999999986 6677888999999888 333456
Q ss_pred EEEcCCC
Q 031590 135 LSLVGLV 141 (157)
Q Consensus 135 ~i~~g~g 141 (157)
+++.|.+
T Consensus 367 ~~i~~~~ 373 (532)
T TIGR02343 367 LVIEQCK 373 (532)
T ss_pred EEEECCC
Confidence 6665544
No 16
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.53 E-value=1.8e-14 Score=130.41 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=102.9
Q ss_pred CccCCccccccc-CCCCC-----ceEEeeCceEEeeccc--ccchHH-----------HHHHH--HhhcCCceEEEeccc
Q 031590 1 MKLKWRPVSSYF-TNQKA-----KDCVLENPFLLILENM--IVSKNI-----------VEQAI--AQADSRPLLIVAEDV 59 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~-----~~~~le~p~IL~td~k--Is~~~~-----------ilp~L--~~~~~rpLlIIAedv 59 (157)
|.|++||.|||| ++.++ ..++||+|++ .++.+ |+++++ +.+++ +.+.+.||+|++++|
T Consensus 219 ivi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~-~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I 297 (526)
T cd03339 219 IVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKP-KTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGF 297 (526)
T ss_pred EEEecccCCCCCCceecCCCEEEEEecccCCcc-ccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 468999999999 99888 8899999999 57877 888877 77777 788899999999999
Q ss_pred ccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEE-----EeCCce
Q 031590 60 EDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-----YQMTRW 134 (157)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~-----vtkd~T 134 (157)
+++|+..|.-|++. |||.+ +.++ |+|||.+|||++++. ++++++++||+|+++. .+++.+
T Consensus 298 ~~~al~~L~~~~I~-----av~~v-----~~~~---LerIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig~~~~~~ 362 (526)
T cd03339 298 DDEANHLLLQNGLP-----AVRWV-----GGVE---IELIAIATGGRIVPR--FEDLSPEKLGKAGLVREISFGTTKDKM 362 (526)
T ss_pred CHHHHHHHHHCCCE-----EEEeC-----CHHH---HHHHHHHhCCEEecc--hhhCChhhcccCceEEEEEecCCCcEE
Confidence 99999999988776 46777 2232 999999999999985 6677788999999987 334566
Q ss_pred EEEcCCC
Q 031590 135 LSLVGLV 141 (157)
Q Consensus 135 ~i~~g~g 141 (157)
+++.|.+
T Consensus 363 ~~i~g~~ 369 (526)
T cd03339 363 LVIEGCP 369 (526)
T ss_pred EEEECCC
Confidence 6665543
No 17
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.49 E-value=9.2e-14 Score=125.19 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=98.4
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeeccc-------------ccchHHHHHHH-------------HhhcCCceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~k-------------Is~~~~ilp~L-------------~~~~~rpLlI 54 (157)
|.|++||.|||| ...++||.||++|.+ +++.+++.|++ +.+.+.||+|
T Consensus 211 ~v~~~~~~~~~m------~~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi 284 (517)
T cd03343 211 IVIDKEVVHPGM------PKRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVF 284 (517)
T ss_pred EEEeccCCCCCC------ccccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 468999999998 245789999999999 68999999864 4567889999
Q ss_pred EecccccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEe---C
Q 031590 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ---M 131 (157)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vt---k 131 (157)
++++|+++|+..|. .+|.+ ||+.. +++.|+|||.+|||++++. +++++.++||+|+++.+. +
T Consensus 285 ~~~~I~~~al~~l~---~~gI~--~v~~v--------~~~~l~~Ia~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 349 (517)
T cd03343 285 CQKGIDDLAQHYLA---KAGIL--AVRRV--------KKSDMEKLARATGAKIVTN--IDDLTPEDLGEAELVEERKVGD 349 (517)
T ss_pred eCCCccHHHHHHHh---HCCcE--EEEeC--------CHHHHHHHHHHhCCEEecc--hhhCChhhCCccceEEEEEECC
Confidence 99999999999886 24543 35544 3678999999999999986 567778899999999988 7
Q ss_pred CceEEEcCCCC
Q 031590 132 TRWLSLVGLVA 142 (157)
Q Consensus 132 d~T~i~~g~g~ 142 (157)
+++++++|.++
T Consensus 350 ~~~~~~~~~~~ 360 (517)
T cd03343 350 DKMVFVEGCKN 360 (517)
T ss_pred eEEEEEEcCCC
Confidence 77777766554
No 18
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.48 E-value=3.5e-14 Score=128.55 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=97.6
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEeccccc-----chhhhhhcccccC
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED-----KLIGSLILGKTCL 74 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~-----eaL~tLv~Nk~rg 74 (157)
|.||+||.|||| +++. .++||+||++|.+++.. +.+.|+.|++++++. +++..++.|++++
T Consensus 211 iv~~~~~~~~~~~~~~~----~~~n~kIll~~~~Le~~---------~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~ 277 (522)
T TIGR02345 211 VAFKKTFSYAGFEQQPK----KFANPKILLLNVELELK---------AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEK 277 (522)
T ss_pred eEEecccCccccccCCc----eeccceEEEEecCcccC---------ccccceEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999 8774 48999999999997644 456699999999999 9999999999998
Q ss_pred cc----eEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec-c-------------ccCCCCCCCCceeeEEEEe
Q 031590 75 QN----KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A-------------TNVSFMPLMLGSCKELLYQ 130 (157)
Q Consensus 75 ~l----~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~-------------~l~~v~~~~LG~a~~v~vt 130 (157)
.. +|| ++.| +|++++++|+|.+|+|++++.++ + ++++++.++||+|+.+...
T Consensus 278 i~~~g~~vv~~~~~----i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~ 348 (522)
T TIGR02345 278 IVESGANVVLSKLP----IGDLATQYFADHNIFCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGTCALFEER 348 (522)
T ss_pred HHhcCCcEEEeCCC----ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccCCceEEEE
Confidence 44 888 7766 89999999999999999998877 2 5688888999999888753
No 19
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.47 E-value=3.5e-14 Score=127.59 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=95.0
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEecccccchhhhhhcccccCcceEE-
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS- 79 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~- 79 (157)
|.||+||.|||| ..+++||+||++|.+++..++-++.. ...||+|++++|+++++..|..|+ ++
T Consensus 206 ~~~~~~~~~~~m------~~~~~n~~Ill~~~~le~~~~~~~~~---~~~~lvi~~~~I~~~al~~l~~~~------I~a 270 (484)
T cd03342 206 LVLDHGARHPDM------PKRVENAYILTCNVSLEYEKTEVNSG---FFYSVVINQKGIDPPSLDMLAKEG------ILA 270 (484)
T ss_pred EEEecCCCCCCC------CccccCceEEEEeCCCCCCccccCcE---EEEEEEEeCCCccHHHHHHHHHCC------CeE
Confidence 468999999998 33478999999999999887633322 124699999999999999999994 55
Q ss_pred eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEE---EEeCCceEEEcCCCC
Q 031590 80 IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL---LYQMTRWLSLVGLVA 142 (157)
Q Consensus 80 VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v---~vtkd~T~i~~g~g~ 142 (157)
||.. ++..|+|||.+|||++++. ++++++++||+|+++ .++.+++++++|.++
T Consensus 271 v~~~--------~~~~l~~ia~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~ 326 (484)
T cd03342 271 LRRA--------KRRNMERLTLACGGVAMNS--VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN 326 (484)
T ss_pred EEeC--------CHHHHHHHHHHhCCEEecc--cccCChhhCcccceEEEEEECCeEEEEEECCCC
Confidence 8865 3447999999999999986 677888899999999 788888877766543
No 20
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.46 E-value=1.4e-13 Score=124.62 Aligned_cols=120 Identities=10% Similarity=0.128 Sum_probs=102.3
Q ss_pred CccCCcccc----ccc-CCCC---------CceEEeeCceEEee----cccccc-hHHHHHHH--HhhcCCceEEEeccc
Q 031590 1 MKLKWRPVS----SYF-TNQK---------AKDCVLENPFLLIL----ENMIVS-KNIVEQAI--AQADSRPLLIVAEDV 59 (157)
Q Consensus 1 m~fdrGylS----pyf-td~~---------~~~~~le~p~IL~t----d~kIs~-~~~ilp~L--~~~~~rpLlIIAedv 59 (157)
|.||+||.| |++ +|++ ..+.++++++++.+ |+.+.. .+.+.+++ +.+.|.||+|++++|
T Consensus 204 ivl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I 283 (517)
T TIGR02342 204 LVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSI 283 (517)
T ss_pred EEEeccccccCCCCccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 468999999 888 8886 66788899999976 555665 57889988 888999999999999
Q ss_pred ccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEE-EeC
Q 031590 60 EDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL-YQM 131 (157)
Q Consensus 60 ~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~-vtk 131 (157)
++++++.++.|.+++ .+++ |+- .++..|+|||.+|||++++. ++++++++||+|++++ ++.
T Consensus 284 ~~~~l~~l~~~~l~~-~~I~av~~--------v~~~~LerIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~~ 346 (517)
T TIGR02342 284 LRDAVNDLALHFLAK-MKIMVVKD--------IEREEVEFICKTIGCKPIAS--IDHFTADKLGSAELVEEVTT 346 (517)
T ss_pred ccccccHHHHHHHhh-CCceEEec--------CCHHHHHHHHHHHCCEEEcc--hhhcCcccCcCCceEEEEEE
Confidence 999999999999999 8888 884 45678999999999999986 5667788999999998 443
No 21
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.44 E-value=1.4e-13 Score=125.03 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=93.3
Q ss_pred cccccc-CCCC-CceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcceEE-ee
Q 031590 7 PVSSYF-TNQK-AKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IA 81 (157)
Q Consensus 7 ylSpyf-td~~-~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-Vk 81 (157)
|.+||| ++++ ++++++++|+.+....+.+ .+.+.+.+ +.+.+.||+|.+++|++.++..|- ..+++ ||
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e-~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~------~~~I~av~ 306 (531)
T TIGR02346 234 FSCPLDTATTETKGTVLIHNAEELLNYSKGE-ENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCE------KYNIMVLK 306 (531)
T ss_pred EecCcCCCcccCceEEEECCHHHHHHHHHHH-HHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHH------HCCcEEEe
Confidence 999999 8888 8999999999999887766 68899999 888999999999999998777333 46777 99
Q ss_pred cCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC
Q 031590 82 KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (157)
Q Consensus 82 aP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk 131 (157)
.| ++++ |+|||.+|||++++. ++++++++||+|+++.+++
T Consensus 307 ~~---~~~~-----l~~Ia~~tGa~ii~~--l~~~~~~~LG~a~~v~~~~ 346 (531)
T TIGR02346 307 IP---SKFE-----LRRLCKTVGATPLAR--LGAPQPEEIGYVDSVYVSE 346 (531)
T ss_pred cC---CHHH-----HHHHHHHHCCEEecc--cccCCHhHccccceEEEEE
Confidence 99 8886 679999999999976 6678888999999888765
No 22
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.41 E-value=4.7e-13 Score=120.92 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=97.9
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeeccc-------------ccchHHHHHHH-------------HhhcCCceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENM-------------IVSKNIVEQAI-------------AQADSRPLLI 54 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~k-------------Is~~~~ilp~L-------------~~~~~rpLlI 54 (157)
|.|++||.|| +|...++||+||++|.+ |++.+++.|++ +.+.+.||+|
T Consensus 214 ~vi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi 287 (519)
T TIGR02339 214 IVVDKEPVHP------GMPKRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVF 287 (519)
T ss_pred EEEecCCCCC------CCccccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4688999888 45667899999999998 89999999986 4556889999
Q ss_pred EecccccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC---
Q 031590 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM--- 131 (157)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk--- 131 (157)
++++|+++|+..|. .+|.+. |+-. ++..|+|||.+|||++++. +++++.++||+|+++.+++
T Consensus 288 ~~~~I~~~al~~L~---~~gI~~--v~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~v~~~~ig~ 352 (519)
T TIGR02339 288 CQKGIDDLAQHYLA---KAGILA--VRRV--------KKSDIEKLARATGAKIVSS--IKEITESDLGYAGLVEERKVGD 352 (519)
T ss_pred ECCCccHHHHHHHH---HCCCEE--EecC--------CHHHHHHHHHHhCCEEeCc--hhhCChhhccCCceEEEEEECC
Confidence 99999999999885 444433 4433 3667999999999999986 5566778899999999988
Q ss_pred CceEEEcCCCC
Q 031590 132 TRWLSLVGLVA 142 (157)
Q Consensus 132 d~T~i~~g~g~ 142 (157)
++++++.|.++
T Consensus 353 ~~~~~~~~~~~ 363 (519)
T TIGR02339 353 DKMTFVEGCKN 363 (519)
T ss_pred eEEEEEEcCCC
Confidence 77787776543
No 23
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.38 E-value=1.3e-13 Score=125.34 Aligned_cols=126 Identities=19% Similarity=0.162 Sum_probs=103.4
Q ss_pred ccCCccccccc-CCCC---CceEEeeCceEEeecccc--------------cchHHHHHHH--HhhcC---CceEEEecc
Q 031590 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMI--------------VSKNIVEQAI--AQADS---RPLLIVAED 58 (157)
Q Consensus 2 ~fdrGylSpyf-td~~---~~~~~le~p~IL~td~kI--------------s~~~~ilp~L--~~~~~---rpLlIIAed 58 (157)
+|++||++||| ++.+ .|..+++||+||++|.++ ++.+++ |.+ ..+.. +|+.|++.+
T Consensus 210 si~ds~lv~G~v~~~~~~~~~~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~-~~l~~~E~~~i~~~v~~Ii~~g 288 (533)
T PTZ00212 210 TLRDSYLEDGFILEKKIGVGQPKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKV-AEIEAAEKEKMKNKVDKILAHG 288 (533)
T ss_pred CccccEEEEeEEEecccCCCCCccccCCcEEEEeCCCCCCcccccCceEEeCCHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999 8887 789999999999999997 788885 555 44433 699999999
Q ss_pred cccchhhhhhcccccCcce---EE-ee-cCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEE---Ee
Q 031590 59 VEDKLIGSLILGKTCLQNK---VS-IA-KPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---YQ 130 (157)
Q Consensus 59 v~~eaL~tLv~Nk~rg~l~---v~-Vk-aP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~---vt 130 (157)
++-.+....|.|...+.|+ ++ || .| . .-++|||.+|||++++. +++++.++||+|+++. +.
T Consensus 289 v~vvv~~~~I~d~a~~~L~~~~I~avr~v~---~------~~l~rIa~~tGa~iis~--l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 289 CNVFINRQLIYNYPEQLFAEAGIMAIEHAD---F------DGMERLAAALGAEIVST--FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred CeEEEeCCCccHHHHHHHHHCCCEEEecCC---H------HHHHHHHHHhCCEEeec--CCCCCHHHccCCceEEEEEEC
Confidence 9888888888888888888 77 88 56 3 24779999999999986 6677888999999998 66
Q ss_pred CCceEEEcC
Q 031590 131 MTRWLSLVG 139 (157)
Q Consensus 131 kd~T~i~~g 139 (157)
.++++++.|
T Consensus 358 ~~~~~~~~~ 366 (533)
T PTZ00212 358 EDKLIRFSG 366 (533)
T ss_pred CeEEEEEEc
Confidence 666666644
No 24
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.35 E-value=1.2e-13 Score=125.50 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=91.3
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchHHHH------------------------HHH--HhhcCCceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVE------------------------QAI--AQADSRPLLI 54 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~il------------------------p~L--~~~~~rpLlI 54 (157)
|.||+||.|| +|..+++||+||++|.+++..++.. +.+ +.+.+-.|+|
T Consensus 210 i~i~~~~~~~------~m~~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi 283 (536)
T TIGR02340 210 YALNCTRASQ------QMPKRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVL 283 (536)
T ss_pred EEEecccCCC------CCcceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4688898887 5677899999999999998776322 333 3455667777
Q ss_pred EecccccchhhhhhcccccCcceEEeecCCCCCchhhH--hhhhhhhhhhhCcEEeec-c---ccCCCCCCCCceeeEEE
Q 031590 55 VAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKET--KAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKELL 128 (157)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~r--k~~L~DiAilTGg~vi~~-~---~l~~v~~~~LG~a~~v~ 128 (157)
....|++.++..| +++| .++.+| +..|+|||.+|||+++++ . ..++++..+||+|++++
T Consensus 284 ~~k~I~~~a~~~L------------~k~~---I~~i~rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 284 TTGGIDDMCLKYF------------VEAG---AMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred eCCCCcHHHHHHH------------HHCC---cEEEecCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 6667777776654 4555 555555 788999999999999998 2 34667788899999999
Q ss_pred ---EeCCceEEEcCCCC
Q 031590 129 ---YQMTRWLSLVGLVA 142 (157)
Q Consensus 129 ---vtkd~T~i~~g~g~ 142 (157)
++++.++++.|.++
T Consensus 349 ~~~ig~~~~~~i~~~~~ 365 (536)
T TIGR02340 349 EERIADDECILIKGTKG 365 (536)
T ss_pred EEEECCeEEEEEEcCCC
Confidence 88888888876554
No 25
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.33 E-value=4.1e-12 Score=115.19 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=93.7
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchH-----------------------H-HHHHH--HhhcCCceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-----------------------I-VEQAI--AQADSRPLLI 54 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~-----------------------~-ilp~L--~~~~~rpLlI 54 (157)
+.||+||.|| +|...++||+||++|.+++..+ + +.+.+ +.+.|.||+|
T Consensus 206 ivi~~~~~~~------~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi 279 (527)
T cd03335 206 YALNCTRASQ------GMPTRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVL 279 (527)
T ss_pred EEEecccCCC------CCcccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 3578888877 4666899999999999997621 1 22445 5688999999
Q ss_pred EecccccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec-c---ccCCCCCCCCceeeEEE-
Q 031590 55 VAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG-A---TNVSFMPLMLGSCKELL- 128 (157)
Q Consensus 55 IAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~-~---~l~~v~~~~LG~a~~v~- 128 (157)
++++|+++|+..|.-|. +. ++-. ++..|+|||.+|||+++++ . ..+++++++||+|+++.
T Consensus 280 ~~k~I~d~al~~L~~~~------I~~v~~v--------~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~ 345 (527)
T cd03335 280 TTGGIDDMCLKYFVEAG------AMAVRRV--------KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQ 345 (527)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC--------CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEE
Confidence 99999999999998862 33 4433 4667999999999999998 2 33567778999999999
Q ss_pred --EeCCceEEEcCCC
Q 031590 129 --YQMTRWLSLVGLV 141 (157)
Q Consensus 129 --vtkd~T~i~~g~g 141 (157)
++.+.++++.|.+
T Consensus 346 ~~ig~~~~~~i~g~~ 360 (527)
T cd03335 346 ERIGDDELILIKGTK 360 (527)
T ss_pred EEECCeEEEEEEcCC
Confidence 7777777776644
No 26
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.30 E-value=1.2e-11 Score=109.92 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=83.8
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEecc-cccchhhhhhcccccCcceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAed-v~~eaL~tLv~Nk~rg~l~v~ 79 (157)
+.|++||.+||| ..+++||+||++|.+++. ||||++ |+++|+..|.- .+++
T Consensus 201 i~~~~~~~~~~m------~~~~~n~~Ili~~~~Le~----------------lIi~~~~I~~~al~~L~~------~~I~ 252 (464)
T cd00309 201 MVFDKGYLSPYM------PKRLENAKILLLDCKLEY----------------VVIAEKGIDDEALHYLAK------LGIM 252 (464)
T ss_pred EEEecCCCCCCC------ceeecCceEEEEecCcce----------------EEecCCCcCHHHHHHHHH------CCeE
Confidence 468999999998 558999999999999998 899998 99999998876 4556
Q ss_pred -eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC----CceEEEc
Q 031590 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM----TRWLSLV 138 (157)
Q Consensus 80 -VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk----d~T~i~~ 138 (157)
|+.. +++.|+|||.+|||++++. +++++.++||+|+++.+++ +-|.+.+
T Consensus 253 ~v~~~--------~~~~L~~Ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~ 306 (464)
T cd00309 253 AVRRV--------RKEDLERIAKATGATIVSR--LEDLTPEDLGTAGLVEETKIGDEKYTFIEG 306 (464)
T ss_pred EEEeC--------CHHHHHHHHHHhCCEEecc--cccCCcccCccccEEEEEEEcCeeEEEEEe
Confidence 7776 3678999999999999987 5677788999999999887 4444443
No 27
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.29 E-value=3.7e-12 Score=115.58 Aligned_cols=119 Identities=20% Similarity=0.228 Sum_probs=96.8
Q ss_pred ccCCccccccc-CCCC---CceEEeeCceEEeecccccchH-------------HHHHHH--HhhcCC---ceEEEeccc
Q 031590 2 KLKWRPVSSYF-TNQK---AKDCVLENPFLLILENMIVSKN-------------IVEQAI--AQADSR---PLLIVAEDV 59 (157)
Q Consensus 2 ~fdrGylSpyf-td~~---~~~~~le~p~IL~td~kIs~~~-------------~ilp~L--~~~~~r---pLlIIAedv 59 (157)
+++.||++||| .+.+ .|...++||+||++|.+++..+ +.++.| ..+... ++.|++.++
T Consensus 199 s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~ 278 (519)
T TIGR02341 199 SLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNI 278 (519)
T ss_pred CcccceEEeeEEEeccCCCCCceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999 8876 7788999999999999998532 235555 444433 889999999
Q ss_pred ccchhhhhhccc---ccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEe
Q 031590 60 EDKLIGSLILGK---TCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQ 130 (157)
Q Consensus 60 ~~eaL~tLv~Nk---~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vt 130 (157)
+..+++.+|.|+ ..+..+++ |+.| +++ .|+|||.+|||++++. +++++.++||+|+++...
T Consensus 279 ~~v~~~~~I~~~~~~~l~~~~I~~v~~~---~~~-----~l~~ia~~tGa~ii~~--~~~~~~~~lG~~~~v~~~ 343 (519)
T TIGR02341 279 NCFINRQLIYNYPEQLFADAGVMAIEHA---DFE-----GIERLALVTGGEIVST--FDHPELVKLGSCDLIEEI 343 (519)
T ss_pred cEEEECCcCCHHHHHHHHHCCcEEEecC---CHH-----HHHHHHHHhCCEEecc--cccCCccccccCceEEEE
Confidence 999999999999 55566777 9999 655 4899999999999996 667778899999876643
No 28
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.28 E-value=7.3e-12 Score=114.12 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=88.9
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchH-------------------------------HHHHHH--Hhh
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKN-------------------------------IVEQAI--AQA 47 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~-------------------------------~ilp~L--~~~ 47 (157)
+.||+||.|||| ..+++||+||++|.+++..+ .|+++. +++
T Consensus 210 iv~~~~~~~~~~------~~~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~ 283 (531)
T TIGR02347 210 LVLDHGARHPDM------PRRVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCG 283 (531)
T ss_pred EEEecCcCCCCC------ceeccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 468999999998 22688999999999997653 222222 110
Q ss_pred c--CCc-eEEEecccccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCcee
Q 031590 48 D--SRP-LLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSC 124 (157)
Q Consensus 48 ~--~rp-LlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a 124 (157)
. +.+ |++....|++.++..|.-+++-+ ++-. .+..|+|||.+|||++++. ++++++++||+|
T Consensus 284 ~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~-----i~rv--------~~~~le~ia~~tGa~~i~~--l~~~~~~~LG~~ 348 (531)
T TIGR02347 284 KSPDKGFVVINQKGIDPPSLDLLAKEGIMA-----LRRA--------KRRNMERLTLACGGEALNS--VEDLTPECLGWA 348 (531)
T ss_pred cCCCccEEEEeCCCccHHHHHHHHHCCceE-----EccC--------CHHHHHHHHHHhCCEEecc--cccCCccccccc
Confidence 0 234 77778999999998776643322 4433 1457999999999999975 677888999999
Q ss_pred eEE---EEeCCceEEEcCCCC
Q 031590 125 KEL---LYQMTRWLSLVGLVA 142 (157)
Q Consensus 125 ~~v---~vtkd~T~i~~g~g~ 142 (157)
++| .++.++++++.|.++
T Consensus 349 ~~v~~~~ig~~~~~~i~~~~~ 369 (531)
T TIGR02347 349 GLVYETSIGEEKYTFIEEVKN 369 (531)
T ss_pred eEEEEEEECCeEEEEEEcCCC
Confidence 999 888888888876554
No 29
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.28 E-value=3.3e-12 Score=115.61 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=98.5
Q ss_pred ccCCccccccc-CCCCC---ceEEeeCceEEeeccccc--------------chHHHHHHH-HhhcC---CceEEEeccc
Q 031590 2 KLKWRPVSSYF-TNQKA---KDCVLENPFLLILENMIV--------------SKNIVEQAI-AQADS---RPLLIVAEDV 59 (157)
Q Consensus 2 ~fdrGylSpyf-td~~~---~~~~le~p~IL~td~kIs--------------~~~~ilp~L-~~~~~---rpLlIIAedv 59 (157)
+++.+|++||| .+... |...++||+||++|.+++ +.+++.++. ..+.. +++.|++.++
T Consensus 198 s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv 277 (517)
T cd03336 198 SLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGI 277 (517)
T ss_pred CccceEEEeeEEEecccCCCCCCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999 77543 467899999999999776 677885544 44443 6999999999
Q ss_pred ccchhhhhhcccccC---cceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC
Q 031590 60 EDKLIGSLILGKTCL---QNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (157)
Q Consensus 60 ~~eaL~tLv~Nk~rg---~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk 131 (157)
+-.+++..|.|...+ ..+++ |+.| ++.+ |+|||.+|||++++. +++++.++||+|+++....
T Consensus 278 ~~v~~~~~I~~~~~~~l~~~~I~av~~v---~~~~-----L~rIa~~tGa~ii~~--l~~~~~~~LG~~~~v~~~~ 343 (517)
T cd03336 278 NCFINRQLIYNYPEQLFADAGIMAIEHA---DFDG-----VERLALVTGGEIAST--FDHPELVKLGTCKLIEEIM 343 (517)
T ss_pred eEEEeCCCccHHHHHHHHHCCcEEEecC---CHHH-----HHHHHHHhCCEEecc--cCCCCcccccccceEEEEE
Confidence 999999999999998 45788 9999 7655 999999999999985 6678888999997766543
No 30
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.26 E-value=1.7e-11 Score=98.14 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=78.5
Q ss_pred CccCCcccccccCCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEecc-cccchhhhhhcccccCcceEE
Q 031590 1 MKLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAED-VEDKLIGSLILGKTCLQNKVS 79 (157)
Q Consensus 1 m~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAed-v~~eaL~tLv~Nk~rg~l~v~ 79 (157)
+.|++||.+|+| ...++||+||+++.+++. +|+++. |+++|+..|.-+ +++
T Consensus 65 v~~~~~~~~~~m------~~~~~n~~Ill~~~~le~----------------vii~~~~I~~~al~~l~~~------~I~ 116 (209)
T cd03333 65 VVFDKGYASPYM------PKRLENAKILLLDCPLEY----------------VVIAEKGIDDLALHYLAKA------GIM 116 (209)
T ss_pred EEEeccccCCCC------CeEcCCCcEEEEeCCeeE----------------EEEecCcccHHHHHHHHHC------CCE
Confidence 358999999988 467899999999999887 888888 999999988762 334
Q ss_pred -eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeCC
Q 031590 80 -IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQMT 132 (157)
Q Consensus 80 -VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtkd 132 (157)
|+.. ++..|+|||.+|||++++. +++++.++||+|+++.+.+.
T Consensus 117 ~v~~~--------~~~~l~~ia~~tga~ii~~--~~~~~~~~lG~~~~v~~~~~ 160 (209)
T cd03333 117 AVRRV--------KKEDLERIARATGATIVSS--LEDLTPEDLGTAELVEETKI 160 (209)
T ss_pred EEEeC--------CHHHHHHHHHHHCCEEecc--cccCChhhceeeeEEEEEEE
Confidence 6665 3457999999999999987 56677889999999999876
No 31
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.21 E-value=6e-11 Score=106.41 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=82.8
Q ss_pred CCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEecccccchhhhhhcccccCcceEE-eecCCCCCchhh
Q 031590 13 TNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKE 91 (157)
Q Consensus 13 td~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~ 91 (157)
+++..+..+++||+|+++|.+++. +.||+|++++|+++++.. +|+ .+++ ||.| +.
T Consensus 207 ~~~~~~~~~~~n~~Ili~~~~Le~------------g~~lvi~~~~I~d~al~~--l~~----~~I~av~~~---~~--- 262 (472)
T cd03341 207 REPEGSVKRVKKAKVAVFSCPFDI------------GVNVIVAGGSVGDLALHY--CNK----YGIMVIKIN---SK--- 262 (472)
T ss_pred cccCCCceeccCCcEEEEeccccC------------CCeEEEECCCCCHHHHHH--HHH----CCeEEEEeC---CH---
Confidence 345556689999999999999987 789999999999999997 443 6677 9999 53
Q ss_pred HhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC---CceEEEcCC
Q 031590 92 TKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM---TRWLSLVGL 140 (157)
Q Consensus 92 rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk---d~T~i~~g~ 140 (157)
..|+|||.+|||+++++ +++++.++||+|+++.+++ +.++++.|.
T Consensus 263 --~~Le~Ia~~tGa~ii~~--~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~ 310 (472)
T cd03341 263 --FELRRLCRTVGATPLPR--LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQN 310 (472)
T ss_pred --HHHHHHHHHhCCEEecc--cccCCHhHCCCceEEEEEEECCeeEEEEEcc
Confidence 34999999999999987 5567788999999999988 666666554
No 32
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.17 E-value=2.2e-10 Score=103.73 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=97.1
Q ss_pred CccCCccccccc-CCCCCceEEeeCceEEeecccc-------------cchHH-----------HHHHH--HhhcCCceE
Q 031590 1 MKLKWRPVSSYF-TNQKAKDCVLENPFLLILENMI-------------VSKNI-----------VEQAI--AQADSRPLL 53 (157)
Q Consensus 1 m~fdrGylSpyf-td~~~~~~~le~p~IL~td~kI-------------s~~~~-----------ilp~L--~~~~~rpLl 53 (157)
+.|++||.|||| +++.+ ++||+||++|.++ +++.+ +.+.+ +.+.|-.++
T Consensus 210 iv~~k~~~~~~~~~~~~~----~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vv 285 (522)
T cd03340 210 VAFKKTFSYAGFEQQPKK----FKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVV 285 (522)
T ss_pred EEEecccCccccccCCcc----ccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 468999999999 87754 8999999999884 45444 34444 556666777
Q ss_pred EEecccccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEE---E-
Q 031590 54 IVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELL---Y- 129 (157)
Q Consensus 54 IIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~---v- 129 (157)
+.-..|++.++..|.=+.+ + ++.+.. +..|++||.+|||++++. +++++.++||+|+++. +
T Consensus 286 l~~~~i~d~a~~~l~~~~I---~-~~~~v~---------~~~l~rIa~~tGa~ii~~--l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 286 LSKLPIGDLATQYFADRDI---F-CAGRVP---------EEDLKRVAQATGGSIQTT--VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred EeCCCCcHHHHHHHHHCCc---E-EEEeCC---------HHHHHHHHHHHCCEEeec--cccCCccccccceEEEEEEEC
Confidence 7777788888877665533 2 212332 345899999999999987 5677888999999998 3
Q ss_pred ------------eCCceEEEcCCCChHHHHHHHHHhhh
Q 031590 130 ------------QMTRWLSLVGLVASLLLKKDVHRFFM 155 (157)
Q Consensus 130 ------------tkd~T~i~~g~g~~~~I~~Rv~qi~~ 155 (157)
++..|++++|..+ ..+++.-+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~TIllrG~t~-~~l~E~er~i~D 387 (522)
T cd03340 351 GERYNIFTGCPKAKTCTIILRGGAE-QFIEEAERSLHD 387 (522)
T ss_pred CEEEEEEECCCCCceEEEEEECCCH-HHHHHHHHHHHH
Confidence 5566888888644 446666555543
No 33
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.12 E-value=2.2e-10 Score=100.74 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=94.4
Q ss_pred cCCcccccccCCCCCceEEeeCceEEeecccccchHH-----------------------HHHHH--HhhcCCceEEEec
Q 031590 3 LKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNI-----------------------VEQAI--AQADSRPLLIVAE 57 (157)
Q Consensus 3 fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~-----------------------ilp~L--~~~~~rpLlIIAe 57 (157)
|+++|.+| .|.-.++||.|+++|..++..++ +.+++ +.+.+.+|+|+++
T Consensus 180 ~~~~~~~~------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~ 253 (485)
T PF00118_consen 180 LDKGFSSP------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQK 253 (485)
T ss_dssp ESSSBSST------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESS
T ss_pred eecccccc------ccccccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeec
Confidence 55666555 45556699999999999999988 99999 7888899999999
Q ss_pred ccccchhhhhhcccccCcceEEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEE---EEeCCce
Q 031590 58 DVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL---LYQMTRW 134 (157)
Q Consensus 58 dv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v---~vtkd~T 134 (157)
+|++.++..|..|++....+ | ++..|++||.+|||++++.. ++++.++||+|+++ .+..+++
T Consensus 254 ~i~~~~l~~l~~~~I~~i~~--v-----------~~~~l~~i~~~tg~~ii~~~--~~l~~~~lG~~~~v~~~~i~~~~~ 318 (485)
T PF00118_consen 254 SIDDEALQYLNKNGILVIRR--V-----------SKEDLERIARATGASIISSL--DDLSDEDLGFCKSVEEREIGNKKY 318 (485)
T ss_dssp EBTHHHHHHHHHCTHEEESS--E-----------HHHHHHHHHHHHTSBEBSSC--GGSTGGGSEEEEEEEEEEETSSEE
T ss_pred ccccccchhhhhhhhhcccc--c-----------hHHHHHhhhcccCCcEeccc--ccccchhhhhhhhhhhcccccccc
Confidence 99999999998887654222 1 46679999999999999883 44555679999999 8888888
Q ss_pred EEEcC
Q 031590 135 LSLVG 139 (157)
Q Consensus 135 ~i~~g 139 (157)
+++.|
T Consensus 319 ~~~~~ 323 (485)
T PF00118_consen 319 IFIEG 323 (485)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 88763
No 34
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.98 E-value=9.4e-10 Score=99.71 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCCCCceEEeeCceEEeecccccc-------------hHHHHHHH-H-----------hhcCCceEEEecccccchhhhh
Q 031590 13 TNQKAKDCVLENPFLLILENMIVS-------------KNIVEQAI-A-----------QADSRPLLIVAEDVEDKLIGSL 67 (157)
Q Consensus 13 td~~~~~~~le~p~IL~td~kIs~-------------~~~ilp~L-~-----------~~~~rpLlIIAedv~~eaL~tL 67 (157)
+++ +|..+++||.||++|.+++. .+++.|++ . ....+|.|||++.. +..+
T Consensus 221 ~~~-~m~~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~----I~dl 295 (525)
T TIGR02344 221 THP-KMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKG----VSDL 295 (525)
T ss_pred CCC-CCccccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC----ccHH
Confidence 344 78889999999999999976 37888775 1 13367999999844 4457
Q ss_pred hcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCce-eeEEEEeC---CceEEEcCCC
Q 031590 68 ILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS-CKELLYQM---TRWLSLVGLV 141 (157)
Q Consensus 68 v~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~-a~~v~vtk---d~T~i~~g~g 141 (157)
..|.+++ .+++ ++ ..++..|+|||.+|||++++. +++++.++||+ |+.+.+.+ +.++++.|.+
T Consensus 296 a~~~l~~-~~I~av~--------~v~~~~LerIa~~tGa~ii~~--l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~ 363 (525)
T TIGR02344 296 AQHYLLK-ANISAIR--------RVRKTDNNRIARACGATIVNR--PEELRESDVGTGCGLFEVKKIGDEYFTFFTECK 363 (525)
T ss_pred HHHHHhH-CCceEEe--------cCCHHHHHHHHHHhCCeEecc--hhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCC
Confidence 7788777 6676 44 456778999999999999986 56677889999 88787733 5666666544
No 35
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.87 E-value=3.7e-09 Score=95.12 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=77.1
Q ss_pred ccCCcccccccCCCCCceEEeeCceEEeecccccchHHHHHHHHhhcCCceEEEecccccchhhhhhcccccCcceEE-e
Q 031590 2 KLKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-I 80 (157)
Q Consensus 2 ~fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-V 80 (157)
.|++|+.+| +|..+++||+||+.|.+++. |+|++++|+++|+..|.-| +++ |
T Consensus 215 vi~k~~~~~------~m~~~~~n~kIlll~~~Le~---------------lvi~~k~I~d~al~~L~~~------~I~~v 267 (480)
T cd03337 215 MLNKDVTHP------KMRRRIENPRIVLLDCPLEY---------------LVITEKGVSDLAQHYLVKA------GITAL 267 (480)
T ss_pred EEeccCCCC------CCCcEecCCCEEEEecCcce---------------EEEeCCCccHHHHHHHHHC------CcEEE
Confidence 355665443 67888999999999998876 9999999999999999887 445 6
Q ss_pred ecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEE----eCCceEEEcCC
Q 031590 81 AKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY----QMTRWLSLVGL 140 (157)
Q Consensus 81 kaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~v----tkd~T~i~~g~ 140 (157)
+.. ++..|+|||.+|||++++. +++++.++||+|.++.. .++.++++.|.
T Consensus 268 ~~v--------~~~~L~rIa~~tGa~ii~~--~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~ 321 (480)
T cd03337 268 RRV--------RKTDNNRIARACGATIVNR--PEELTESDVGTGAGLFEVKKIGDEYFTFITEC 321 (480)
T ss_pred EeC--------CHHHHHHHHHHHCCEEecc--hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcC
Confidence 654 3556999999999999987 56677789999654444 22444554443
No 36
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=96.81 E-value=0.0074 Score=50.72 Aligned_cols=101 Identities=13% Similarity=0.244 Sum_probs=69.2
Q ss_pred CceEEeeCceEEeecccccch------HHHHHH----------H---HhhcCCceEEEecccccchhhhhhcccccCcce
Q 031590 17 AKDCVLENPFLLILENMIVSK------NIVEQA----------I---AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK 77 (157)
Q Consensus 17 ~~~~~le~p~IL~td~kIs~~------~~ilp~----------L---~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~ 77 (157)
+|.-.++||.|++.+..++.. .++-.+ + +...|--+++.-..|++.|+..|.=+ | +-
T Consensus 79 ~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~---g-I~ 154 (261)
T cd03334 79 RMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA---G-IT 154 (261)
T ss_pred cCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC---C-CE
Confidence 566778999999998877432 222222 2 45567677777888998888766543 3 22
Q ss_pred EEeecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEEeC
Q 031590 78 VSIAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLYQM 131 (157)
Q Consensus 78 v~VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~vtk 131 (157)
+ |+-+ . +..|+.||-.|||++++.+ .+..+++.||+|+++.+.+
T Consensus 155 ~-v~~v---~-----~~dl~rIa~~tGa~ii~~i-~~~~~~~~lG~~~~v~~~~ 198 (261)
T cd03334 155 L-VLNV---K-----PSVLERISRCTGADIISSM-DDLLTSPKLGTCESFRVRT 198 (261)
T ss_pred E-EEec---C-----HHHHHHHHHHhCCEEecCh-hhhcCcccCcCcceEEEEE
Confidence 2 4555 2 2358899999999999882 1346678899998777754
No 37
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=90.26 E-value=0.27 Score=43.99 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=50.3
Q ss_pred HhhcCCceEEEecccccchhhhhhcccccCcceEE--eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCc
Q 031590 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS--IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLG 122 (157)
Q Consensus 45 ~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~--VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG 122 (157)
+..+|--|.|--=-++.||=..|.-|.+- .+ |--| .+|=|||.|||+.+.+ +++.+.+.||
T Consensus 151 vK~~ga~l~icqwgfddeanhll~~n~lp----avrwVGGp-----------EiEliAiaT~grIVpr--F~eL~~~kLG 213 (400)
T KOG0357|consen 151 IKETGANLAICQWGFDDEANHLLLQNNLP----AVRWVGGP-----------EIELIAIATGGRIVPR--FSELTAEKLG 213 (400)
T ss_pred HHhhCCcEEEEecccCchhhhHHhhcCCC----ceeecCCc-----------ceEEEEeecCCeeecc--HhhhCHhhcc
Confidence 66777666666678999998888877654 45 6666 2788999999999987 4566777888
Q ss_pred eeeEEE
Q 031590 123 SCKELL 128 (157)
Q Consensus 123 ~a~~v~ 128 (157)
+|..|.
T Consensus 214 ~aglVr 219 (400)
T KOG0357|consen 214 FAGLVR 219 (400)
T ss_pred ccceEE
Confidence 776654
No 38
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=76.29 E-value=2.6 Score=34.06 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=40.3
Q ss_pred eeCceEEeecccccchHHHHHHHHhhcCCceEEEecccc-cchhhhhhcccccCcceEEeecC
Q 031590 22 LENPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVE-DKLIGSLILGKTCLQNKVSIAKP 83 (157)
Q Consensus 22 le~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~-~eaL~tLv~Nk~rg~l~v~VkaP 83 (157)
.-+|+..-+++.-+-..+++-.++.+.+|||+|+.+... +|.+-.++==.-+..++++-.+|
T Consensus 9 pfd~~~I~~~K~at~~p~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~ 71 (170)
T COG1880 9 PFDPTNIATSKTATAVPEVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATAS 71 (170)
T ss_pred ccCcccccccchhccccHHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecch
Confidence 345555556654444455555558999999999999987 66666555444455567654455
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=3.2 Score=38.80 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=54.2
Q ss_pred hhcCCceEEEecccccchhhhhhcccccCcceEEeecCCCCCchhh--HhhhhhhhhhhhCcEEeec-ccc---CCCCCC
Q 031590 46 QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKPHEDDYEKE--TKAIMDDLAILTGGQVLNG-ATN---VSFMPL 119 (157)
Q Consensus 46 ~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~--rk~~L~DiAilTGg~vi~~-~~l---~~v~~~ 119 (157)
..++-.++....-|++-.+.-++--. ..+=+ +|+.|+-||=.||+++++. ..+ |++...
T Consensus 282 l~~ganvVLtt~gIddmc~K~~veag---------------amAVrR~~k~dlk~iakatGat~~sSla~l~geetf~~~ 346 (545)
T KOG0360|consen 282 LATGANVVLTTGGIDDMCLKYFVEAG---------------AMAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPA 346 (545)
T ss_pred HhcCCcEEEEcCCccHHHHHHHHHcc---------------hhhhHHHHHHHHHHHHHhhCCeeeehhhccccccccChh
Confidence 34566777777777776665544321 22223 4688999999999999999 333 567778
Q ss_pred CCceeeEEEE---eCCceEEEcCC
Q 031590 120 MLGSCKELLY---QMTRWLSLVGL 140 (157)
Q Consensus 120 ~LG~a~~v~v---tkd~T~i~~g~ 140 (157)
.||+|++|.. ..|+.+++.|.
T Consensus 347 ~lG~a~evvqeri~dde~ilikg~ 370 (545)
T KOG0360|consen 347 SLGSADEVVQERIGDDELILIKGT 370 (545)
T ss_pred hccchhHHHHHhcccceeEEeccC
Confidence 9999998754 45666665553
No 40
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=55.01 E-value=32 Score=30.16 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=45.7
Q ss_pred eeCceEEeecccccc-------hHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce---EE-eecCCCCCc
Q 031590 22 LENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDY 88 (157)
Q Consensus 22 le~p~IL~td~kIs~-------~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~gf 88 (157)
+.++-+|+-|. |.. ..+++.++ ..+.+++++ |+-+-.++.|..+ ..+++..+. ++ +..| .+
T Consensus 197 ~~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~~p~~l~~l-~~~l~SRl~~g~~v~i~~p---d~ 270 (405)
T TIGR00362 197 YRSVDLLLIDD-IQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDRPPKELPGL-EERLRSRFEWGLVVDIEPP---DL 270 (405)
T ss_pred HHhCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCCCHHHHhhh-hhhhhhhccCCeEEEeCCC---CH
Confidence 34455666665 432 23577777 456677765 4555666666654 344444443 34 8999 66
Q ss_pred hhhHhhhhhhhhhhhC
Q 031590 89 EKETKAIMDDLAILTG 104 (157)
Q Consensus 89 G~~rk~~L~DiAilTG 104 (157)
+.|.++|+..+-.-|
T Consensus 271 -~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 271 -ETRLAILQKKAEEEG 285 (405)
T ss_pred -HHHHHHHHHHHHHcC
Confidence 457788888876544
No 41
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=52.13 E-value=13 Score=28.20 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=24.1
Q ss_pred CceEEEecccccchhhhhhccccc-CcceEE-eecC
Q 031590 50 RPLLIVAEDVEDKLIGSLILGKTC-LQNKVS-IAKP 83 (157)
Q Consensus 50 rpLlIIAedv~~eaL~tLv~Nk~r-g~l~v~-VkaP 83 (157)
.-|+|||+|++++-+...+-..-. -.++++ |...
T Consensus 44 a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk 79 (116)
T COG1358 44 AKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK 79 (116)
T ss_pred CcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 589999999997777766655544 456665 5544
No 42
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=49.45 E-value=24 Score=27.39 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.9
Q ss_pred eEEeecccccchHHHHHHHHhhcCCceEEEe
Q 031590 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVA 56 (157)
Q Consensus 26 ~IL~td~kIs~~~~ilp~L~~~~~rpLlIIA 56 (157)
++++||..|++.++-.-+++..++-||-||.
T Consensus 112 LlIlTDG~i~D~~~T~~aIv~AS~~PlSIIi 142 (146)
T PF07002_consen 112 LLILTDGQITDMEETIDAIVEASKLPLSIII 142 (146)
T ss_pred EEEecccccccHHHHHHHHHHHccCCeEEEE
Confidence 5688999999999988888666678998874
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=44.53 E-value=37 Score=27.48 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=48.1
Q ss_pred EeeCceEEeecccccch-------HHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcce---EE-eecCCCCC
Q 031590 21 VLENPFLLILENMIVSK-------NIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDD 87 (157)
Q Consensus 21 ~le~p~IL~td~kIs~~-------~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~g 87 (157)
.+.++-+|+-|. |..+ ..+..++ ..+.+++++|++-+..++.|.. ....++..+. ++ ++.| .
T Consensus 88 ~~~~~dlLilDD-i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~-~~~~L~sRl~~g~~~~l~~p---d 162 (229)
T PRK06893 88 NLEQQDLVCLDD-LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI-KLPDLASRLTWGEIYQLNDL---T 162 (229)
T ss_pred hcccCCEEEEeC-hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc-cchhHHHHHhcCCeeeCCCC---C
Confidence 455677788776 4332 2456666 5556778899999999988873 2334444333 55 9999 5
Q ss_pred chhhHhhhhhhhhh
Q 031590 88 YEKETKAIMDDLAI 101 (157)
Q Consensus 88 fG~~rk~~L~DiAi 101 (157)
. +.|.++|+-.|.
T Consensus 163 ~-e~~~~iL~~~a~ 175 (229)
T PRK06893 163 D-EQKIIVLQRNAY 175 (229)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 456667776655
No 44
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=43.02 E-value=48 Score=23.16 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=38.6
Q ss_pred hhcCCceEEEecccccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec
Q 031590 46 QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG 110 (157)
Q Consensus 46 ~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~ 110 (157)
+..-+|.+.|+.+=--+.+..-+-..++. =.++ ||... ...+.++++.+.||-.||+.++..
T Consensus 13 a~~l~p~v~IGk~Glt~~vi~~i~~~l~~-~eLvKVk~~~--~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 13 AHHLKPVVQIGKNGLTDGVIEEIDDALEK-HELVKVKVLG--NCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HTTC--SEEE-TTSS-HHHHHHHHHHHHH-HSEEEEEETT----HHHHHHHHHHHHHHHTEEEEEE
T ss_pred hcCCCCeEEECCCCCCHHHHHHHHHHHHh-CCeeEEEEcc--CCHHHHHHHHHHHHHHhCCEEEEE
Confidence 34447999888775444444444444443 3456 77772 367889999999999999999865
No 45
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=42.56 E-value=38 Score=26.79 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=36.0
Q ss_pred CceEEeecccccchHHHHHHHHhhcCCceEEEeccccc----chhhhhhcccccCcceEE----eecCCCCCchhhHhhh
Q 031590 24 NPFLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED----KLIGSLILGKTCLQNKVS----IAKPHEDDYEKETKAI 95 (157)
Q Consensus 24 ~p~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~----eaL~tLv~Nk~rg~l~v~----VkaP~~~gfG~~rk~~ 95 (157)
|.-+.++..+++--..+--.++.+.+||+++| +.+. +.+...+..+--.+|+|+ =++| |-+..-++.
T Consensus 65 DgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i--~~~~~~~~~~v~~wl~~~~i~vLNVAGPReS~~P---gI~~~~~~~ 139 (145)
T PF12694_consen 65 DGTLIFTRGELTGGTALTVEFARKHGKPCLHI--DLSIPEAAAAVAEWLREHNIRVLNVAGPRESKAP---GIYRQVRAF 139 (145)
T ss_dssp SEEEEEESSS--HHHHHHHHHHHHTT--EEEE--TS-HHHHHHHHHHHHHHTT--EEEEE---TTT-T---THHHHHHHH
T ss_pred CeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE--ecCcccHHHHHHHHHHHCCceEEEeccCcccCCC---CHHHHHHHH
Confidence 44556666666644433322388999999999 3332 222233333333467887 5677 877777777
Q ss_pred hhh
Q 031590 96 MDD 98 (157)
Q Consensus 96 L~D 98 (157)
|+.
T Consensus 140 L~~ 142 (145)
T PF12694_consen 140 LEA 142 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 46
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=37.04 E-value=33 Score=32.03 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=32.5
Q ss_pred hhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEE---eCCceEEEcC
Q 031590 94 AIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY---QMTRWLSLVG 139 (157)
Q Consensus 94 ~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~v---tkd~T~i~~g 139 (157)
..||.+-..|||..+.. .++.+++.||-|..|-. -.+..|++.+
T Consensus 311 RNmERL~lacGG~a~ns--vddLtp~~LG~aglVye~tlGEEkfTFIE~ 357 (520)
T KOG0359|consen 311 RNMERLVLACGGEAVNS--VDDLTPDYLGYAGLVYEYTLGEEKFTFIEK 357 (520)
T ss_pred hhHHHHHHhhccceecc--cccCChhhccccceeEEeeccceeeEeeec
Confidence 46899999999998865 77889999999988743 3344444443
No 47
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=36.94 E-value=18 Score=30.21 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=32.1
Q ss_pred hhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEe
Q 031590 64 IGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVL 108 (157)
Q Consensus 64 L~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi 108 (157)
|+.+.+|+.-|...=+ |-.- +|=++|++.|..+|.-.--+|.
T Consensus 119 L~n~~l~~~~g~~~~v~ldv~---~yRerR~e~L~~LA~~~A~rV~ 161 (208)
T COG1847 119 LANLYLNKIGGKFKRVTLDVG---DYRERRKETLIKLAERAAERVL 161 (208)
T ss_pred HHHHHhhhhcCcceEEEEEhh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789988875555 9998 9999999999999975444443
No 48
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=36.79 E-value=43 Score=28.40 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=25.5
Q ss_pred eEEeecccccchHHHHHHHHhhcCCceEEEeccccc
Q 031590 26 FLLILENMIVSKNIVEQAIAQADSRPLLIVAEDVED 61 (157)
Q Consensus 26 ~IL~td~kIs~~~~ilp~L~~~~~rpLlIIAedv~~ 61 (157)
++++||..|++.++..-+++..++.||-||-=-|..
T Consensus 160 LLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd 195 (254)
T cd01459 160 LLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGD 195 (254)
T ss_pred EEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 356678888888888777766666788777655533
No 49
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.70 E-value=31 Score=24.68 Aligned_cols=34 Identities=29% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCceEEEecccccchhhhhhcccccCcceEEeecC
Q 031590 49 SRPLLIVAEDVEDKLIGSLILGKTCLQNKVSIAKP 83 (157)
Q Consensus 49 ~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~VkaP 83 (157)
..-+++||+|+++.....|..=--...++++ ..|
T Consensus 29 ~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v-~V~ 62 (84)
T PRK13600 29 QVTSLIIAEDVEVYLMTRVLSQINQKNIPVS-FFK 62 (84)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEE-EEC
Confidence 3579999999999988766554444556775 445
No 50
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=36.42 E-value=87 Score=28.25 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=44.1
Q ss_pred CceEEeecccccc-------hHHHHHHH--HhhcCCceEEEecccccchhhhh---hcccccCcceEE-eecCCCCCchh
Q 031590 24 NPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVS-IAKPHEDDYEK 90 (157)
Q Consensus 24 ~p~IL~td~kIs~-------~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tL---v~Nk~rg~l~v~-VkaP~~~gfG~ 90 (157)
+|-+|+.|. +.. -++++-++ ..+.+++++| +-|-.++-|..+ +..|+.+++ ++ +.+| .+ +
T Consensus 194 ~~dvLlIDD-i~~l~~~~~~q~elf~~~n~l~~~~k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl-~v~i~~p---d~-e 266 (440)
T PRK14088 194 KVDVLLIDD-VQFLIGKTGVQTELFHTFNELHDSGKQIVI-CSDREPQKLSEFQDRLVSRFQMGL-VAKLEPP---DE-E 266 (440)
T ss_pred cCCEEEEec-hhhhcCcHHHHHHHHHHHHHHHHcCCeEEE-ECCCCHHHHHHHHHHHhhHHhcCc-eEeeCCC---CH-H
Confidence 466777776 321 23566666 4555666555 445666666654 444444442 55 9999 65 4
Q ss_pred hHhhhhhhhhhhhC
Q 031590 91 ETKAIMDDLAILTG 104 (157)
Q Consensus 91 ~rk~~L~DiAilTG 104 (157)
.|.++|+-.+-.-|
T Consensus 267 ~r~~IL~~~~~~~~ 280 (440)
T PRK14088 267 TRKKIARKMLEIEH 280 (440)
T ss_pred HHHHHHHHHHHhcC
Confidence 67778887765433
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=36.12 E-value=91 Score=27.89 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=45.6
Q ss_pred eCceEEeeccccc-------chHHHHHHH--HhhcCCceEEEecccccchhhhh---hcccccCcceEE-eecCCCCCch
Q 031590 23 ENPFLLILENMIV-------SKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVS-IAKPHEDDYE 89 (157)
Q Consensus 23 e~p~IL~td~kIs-------~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tL---v~Nk~rg~l~v~-VkaP~~~gfG 89 (157)
.++-+|+-|. |. +.++++.++ ..+.+++++| +-+-.++.|..+ +..|+.++ .++ ++.| .+
T Consensus 210 ~~~dlLiiDD-i~~l~~~~~~~~~l~~~~n~l~~~~~~iii-ts~~~p~~l~~l~~~l~SRl~~g-l~v~i~~p---d~- 282 (450)
T PRK00149 210 RSVDVLLIDD-IQFLAGKERTQEEFFHTFNALHEAGKQIVL-TSDRPPKELPGLEERLRSRFEWG-LTVDIEPP---DL- 282 (450)
T ss_pred hcCCEEEEeh-hhhhcCCHHHHHHHHHHHHHHHHCCCcEEE-ECCCCHHHHHHHHHHHHhHhcCC-eeEEecCC---CH-
Confidence 3555777776 42 234677777 5566777655 445566665542 34455443 345 9999 66
Q ss_pred hhHhhhhhhhhhhhC
Q 031590 90 KETKAIMDDLAILTG 104 (157)
Q Consensus 90 ~~rk~~L~DiAilTG 104 (157)
+.|.++|+..+---|
T Consensus 283 ~~r~~il~~~~~~~~ 297 (450)
T PRK00149 283 ETRIAILKKKAEEEG 297 (450)
T ss_pred HHHHHHHHHHHHHcC
Confidence 567788888776444
No 52
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=35.69 E-value=35 Score=30.07 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=51.9
Q ss_pred ceEEEecccccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeec--cccCC------CCC---
Q 031590 51 PLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNG--ATNVS------FMP--- 118 (157)
Q Consensus 51 pLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~--~~l~~------v~~--- 118 (157)
==+|||.|+++|||..|-- |..++++ +..+ . ..+. -.++--+.||-++-+ ..+.+ +|.
T Consensus 194 ~EviiAP~f~~eAleiL~~---KKnlRll~~~~~---~--~~~~--~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~P 263 (315)
T PF01808_consen 194 LEVIIAPDFTPEALEILKK---KKNLRLLKLPDP---P--NSKP--ELEFRSVDGGLLVQDRDNALIDPDDWKVVTKRQP 263 (315)
T ss_dssp EEEEEESEB-HHHHHHHHC---TCCGEEEEEEES---T--TC----SEEEEEETTEEEEEE--SGGCSGGGGEEESSS--
T ss_pred EEEEEeCCCCHHHHHHHHh---cCCeEEEEeccc---c--cCCC--CeEEEEEeccEEEEcCCCCCCCHHHCeEecCCCC
Confidence 4479999999999997733 4578887 5554 1 1111 335555678876655 11111 111
Q ss_pred -----C---------CCceeeEEEEeCCceEEEcCCCChHHHH
Q 031590 119 -----L---------MLGSCKELLYQMTRWLSLVGLVASLLLK 147 (157)
Q Consensus 119 -----~---------~LG~a~~v~vtkd~T~i~~g~g~~~~I~ 147 (157)
+ -.-+..-|++.||..++=-|.|....+.
T Consensus 264 t~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~sRVd 306 (315)
T PF01808_consen 264 TEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMSRVD 306 (315)
T ss_dssp -HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSSHHH
T ss_pred CHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcchHH
Confidence 0 1234566888888888877888766554
No 53
>PRK06620 hypothetical protein; Validated
Probab=35.30 E-value=48 Score=26.85 Aligned_cols=69 Identities=16% Similarity=0.110 Sum_probs=42.6
Q ss_pred CceEEeecccccchHH-HHHHH---HhhcCCceEEEecccccchhhhhhcccccCcce---EE-eecCCCCCchhhHhhh
Q 031590 24 NPFLLILENMIVSKNI-VEQAI---AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNK---VS-IAKPHEDDYEKETKAI 95 (157)
Q Consensus 24 ~p~IL~td~kIs~~~~-ilp~L---~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~---v~-VkaP~~~gfG~~rk~~ 95 (157)
+.-+|+-|. |...++ .+.-+ +.+.|+++ +|+-+-.+.-+. + +.++..+. ++ +++| ...+ |+++
T Consensus 85 ~~d~lliDd-i~~~~~~~lf~l~N~~~e~g~~i-lits~~~p~~l~-l--~~L~SRl~~gl~~~l~~p---d~~~-~~~~ 155 (214)
T PRK06620 85 KYNAFIIED-IENWQEPALLHIFNIINEKQKYL-LLTSSDKSRNFT-L--PDLSSRIKSVLSILLNSP---DDEL-IKIL 155 (214)
T ss_pred cCCEEEEec-cccchHHHHHHHHHHHHhcCCEE-EEEcCCCccccc-h--HHHHHHHhCCceEeeCCC---CHHH-HHHH
Confidence 344666666 666553 34444 56777765 555556666554 3 66776666 67 9999 7655 5667
Q ss_pred hhhhhh
Q 031590 96 MDDLAI 101 (157)
Q Consensus 96 L~DiAi 101 (157)
++-.+-
T Consensus 156 l~k~~~ 161 (214)
T PRK06620 156 IFKHFS 161 (214)
T ss_pred HHHHHH
Confidence 766554
No 54
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=35.14 E-value=45 Score=30.39 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=52.0
Q ss_pred ceEEEecccccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCC--------
Q 031590 51 PLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLML-------- 121 (157)
Q Consensus 51 pLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~L-------- 121 (157)
-=+|||.++++|||..|--.| .|.+.++ +. | .+.. . ..++--+.||.++-+.....++.+.|
T Consensus 136 ~EvIIAP~f~~eALeiL~~KK-n~nlriL~~~-~---~~~~---~-~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vVT~~~ 206 (390)
T PRK07106 136 SDGIIAPGYTPEALEILKAKK-KGNYNIIKID-P---NYEP---A-PIETKDVFGITFEQGRNELKIDEDLLKNIVTENK 206 (390)
T ss_pred EEEEEcCCCCHHHHHHHHhCc-CCceEEEEcC-C---CCCC---C-ceEEEEEeeEEEEECCCCCCCCHHHhhcccCCCC
Confidence 347999999999999776433 4567776 52 2 2211 1 12344456777765511100111111
Q ss_pred -------------------ceeeEEEEeCCceEEEcCCCChHHHH
Q 031590 122 -------------------GSCKELLYQMTRWLSLVGLVASLLLK 147 (157)
Q Consensus 122 -------------------G~a~~v~vtkd~T~i~~g~g~~~~I~ 147 (157)
=+...|.+.||..+|=-|.|....+.
T Consensus 207 ~pt~~e~~DL~fAw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRVd 251 (390)
T PRK07106 207 ELPDEAKRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRIH 251 (390)
T ss_pred CcCHHHHHHHHHHHHHHHhcccceEEEEeCCeEEEeCCCCcchHH
Confidence 12347889999999988999877654
No 55
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=34.39 E-value=2.7e+02 Score=26.03 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=62.4
Q ss_pred EeeCceEEeecccccchHHHHHHH--------------HhhcCCc-eEEEecccccchhhhhhcccccCcceEE-eecCC
Q 031590 21 VLENPFLLILENMIVSKNIVEQAI--------------AQADSRP-LLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPH 84 (157)
Q Consensus 21 ~le~p~IL~td~kIs~~~~ilp~L--------------~~~~~rp-LlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~ 84 (157)
+..+|.+- +...+++.++++-++ ..+.+.. .++-+..|+.-+.+.|.=+.+ +.+- |+..
T Consensus 229 ~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~I---lt~~~v~~~- 303 (524)
T COG0459 229 EIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAI---LTGRRVKKE- 303 (524)
T ss_pred ccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcc---eecceecch-
Confidence 34444444 555555555554444 3355677 999999999988887764432 3333 5555
Q ss_pred CCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCce--eeEEEEe
Q 031590 85 EDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS--CKELLYQ 130 (157)
Q Consensus 85 ~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~--a~~v~vt 130 (157)
+.| +-|+-+|||+.++. +++.+...+|. |..+.-+
T Consensus 304 --dl~-------~~l~~~~ga~~v~~--~~d~t~~~~G~~~~~~ve~~ 340 (524)
T COG0459 304 --DLG-------ERLAKLGGAKIVSV--LKDLTTIVLGEGAAGLVEET 340 (524)
T ss_pred --hhH-------HHHHHccCceEEee--cccCceeecCccccceEEEe
Confidence 444 26899999998876 56677788898 8888776
No 56
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.00 E-value=51 Score=28.62 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=39.8
Q ss_pred ccccccCCCCCceEEeeCceEEeeccc-ccchHHHHHHH---HhhcC-CceEEEeccc
Q 031590 7 PVSSYFTNQKAKDCVLENPFLLILENM-IVSKNIVEQAI---AQADS-RPLLIVAEDV 59 (157)
Q Consensus 7 ylSpyftd~~~~~~~le~p~IL~td~k-Is~~~~ilp~L---~~~~~-rpLlIIAedv 59 (157)
|+.|||.|+.=.++. ..|.++|.+-. |.++++++..+ +++.| ..+-|||..-
T Consensus 143 ~l~~~F~D~rYikVd-GKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 143 YLLPYFKDPRYIKVD-GKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred HHHHHhCCCCceeEC-CEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 788999887777776 68999999875 45677777777 77777 4588888774
No 57
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.87 E-value=97 Score=25.03 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=46.2
Q ss_pred EeeCceEEeecc--cccc----hHHHHHHH--HhhcCCceEEEecccccchhhh---hhcccccCcceEEeecCCCCCch
Q 031590 21 VLENPFLLILEN--MIVS----KNIVEQAI--AQADSRPLLIVAEDVEDKLIGS---LILGKTCLQNKVSIAKPHEDDYE 89 (157)
Q Consensus 21 ~le~p~IL~td~--kIs~----~~~ilp~L--~~~~~rpLlIIAedv~~eaL~t---Lv~Nk~rg~l~v~VkaP~~~gfG 89 (157)
.|++.-+|+.|. .+.. .+.+.-++ ..+.++++ |++-+..++.|.. =+.+|+.+++.+-++.| ..
T Consensus 94 ~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~l-i~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~p---d~- 168 (219)
T PF00308_consen 94 RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQL-ILTSDRPPSELSGLLPDLRSRLSWGLVVELQPP---DD- 168 (219)
T ss_dssp HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEE-EEEESS-TTTTTTS-HHHHHHHHCSEEEEE-------H-
T ss_pred hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeE-EEEeCCCCccccccChhhhhhHhhcchhhcCCC---CH-
Confidence 345555666664 2222 23566666 66777775 5555667666653 35678888766559999 66
Q ss_pred hhHhhhhhhhhhhhCc
Q 031590 90 KETKAIMDDLAILTGG 105 (157)
Q Consensus 90 ~~rk~~L~DiAilTGg 105 (157)
+.|+++|+..|---|-
T Consensus 169 ~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 169 EDRRRILQKKAKERGI 184 (219)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6678888888875444
No 58
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=29.82 E-value=82 Score=29.26 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=48.7
Q ss_pred HhhcCCceEEEecccccchhhhhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCce
Q 031590 45 AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGS 123 (157)
Q Consensus 45 ~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~ 123 (157)
+.++|-.+|+|-..|=.||++.|.+.-+.. +++. ||-- .|++ .|=+.-..|.+.+++ ++..+.+.||+
T Consensus 285 IKk~gcnvLliQKSILRdavsDLAlHfL~k-lkimvikdi-------eRed-iefick~l~c~Pia~--id~f~~d~Lg~ 353 (534)
T KOG0358|consen 285 IKKAGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVIKDI-------ERED-IEFICKTLGCKPIAD--IDHFTADKLGS 353 (534)
T ss_pred HHhcCCeEEEEeHHHHHHHHHHHHHHHHHh-CcEEEEccc-------cHhh-HHHHHhhcCCeecch--hhhcChhhcCc
Confidence 567788999999999999999998877775 7777 8888 4432 233333346666655 45566666665
Q ss_pred ee
Q 031590 124 CK 125 (157)
Q Consensus 124 a~ 125 (157)
|.
T Consensus 354 ad 355 (534)
T KOG0358|consen 354 AD 355 (534)
T ss_pred ch
Confidence 54
No 59
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=29.24 E-value=1.1e+02 Score=29.46 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=48.4
Q ss_pred eeCceEEeecccccc-------hHHHHHHH--HhhcCCceEEEecccccchhhhh---hcccccCcceEEeecCCCCCch
Q 031590 22 LENPFLLILENMIVS-------KNIVEQAI--AQADSRPLLIVAEDVEDKLIGSL---ILGKTCLQNKVSIAKPHEDDYE 89 (157)
Q Consensus 22 le~p~IL~td~kIs~-------~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tL---v~Nk~rg~l~v~VkaP~~~gfG 89 (157)
|.++-+|+.|. |.. -.+++-++ ..+.+++++| +-+..+.-|..| +..|+..++.+-++.| .+
T Consensus 375 y~~~DLLlIDD-Iq~l~gke~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~P---D~- 448 (617)
T PRK14086 375 YREMDILLVDD-IQFLEDKESTQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPP---EL- 448 (617)
T ss_pred hhcCCEEEEeh-hccccCCHHHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCC---CH-
Confidence 45566777775 322 24577777 5566777665 666666666543 5567777665559999 76
Q ss_pred hhHhhhhhhhhhhhC
Q 031590 90 KETKAIMDDLAILTG 104 (157)
Q Consensus 90 ~~rk~~L~DiAilTG 104 (157)
+.|.++|+=.|-.-|
T Consensus 449 EtR~aIL~kka~~r~ 463 (617)
T PRK14086 449 ETRIAILRKKAVQEQ 463 (617)
T ss_pred HHHHHHHHHHHHhcC
Confidence 467778876665433
No 60
>PRK13695 putative NTPase; Provisional
Probab=29.02 E-value=2.1e+02 Score=21.66 Aligned_cols=12 Identities=8% Similarity=0.374 Sum_probs=5.7
Q ss_pred hcCCceEEEecc
Q 031590 47 ADSRPLLIVAED 58 (157)
Q Consensus 47 ~~~rpLlIIAed 58 (157)
+.++|++++.-+
T Consensus 124 ~~~~~~i~v~h~ 135 (174)
T PRK13695 124 DSEKPVIATLHR 135 (174)
T ss_pred hCCCeEEEEECc
Confidence 444455554444
No 61
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=28.80 E-value=35 Score=27.90 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=40.7
Q ss_pred cCCcccccccCCCCCceEEeeCceEEeecccccchHHHHHHHH--hhcCCceEEEecccccchhhhhhcccccCcceEE-
Q 031590 3 LKWRPVSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAIA--QADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS- 79 (157)
Q Consensus 3 fdrGylSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L~--~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~- 79 (157)
+-+|.-||||-|... .+.+|..+ +.+.-.++ .+....=.|++-+..+-.+++.+..++. ++.+
T Consensus 30 L~SG~~S~~y~D~~~---i~~~p~~l---------~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~--~p~~~ 95 (206)
T PRK13809 30 LASGEETPIYVDMRL---VISSPEVL---------QTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYN--IPMVL 95 (206)
T ss_pred ECCcCCCCEEEEChh---hccCHHHH---------HHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhC--CCEEE
Confidence 567999999933221 44555322 22222331 1222456799999999999999998864 5666
Q ss_pred eec
Q 031590 80 IAK 82 (157)
Q Consensus 80 Vka 82 (157)
++.
T Consensus 96 ~RK 98 (206)
T PRK13809 96 RRK 98 (206)
T ss_pred EeC
Confidence 555
No 62
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=28.33 E-value=63 Score=25.59 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=52.5
Q ss_pred cccccCCCCCceEEeeCceEEeecccccchHHHHHHH--HhhcCCceEEEecccccchhhhhhcccccCcceEE-eecCC
Q 031590 8 VSSYFTNQKAKDCVLENPFLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS-IAKPH 84 (157)
Q Consensus 8 lSpyftd~~~~~~~le~p~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~-VkaP~ 84 (157)
..||++|.- .++.+++|||=- -..+.-++.++ +++.-.++ ..+- |+.|+
T Consensus 11 Fg~Yl~d~~-~~I~ieDPYir~----~hQi~Nl~~F~El~vk~~~~~-----------------------~~i~LvT~~d 62 (148)
T cd02685 11 FGPYLDDGV-TEITVEDPYIRN----FHQIRNFLRFCELVVKPPCEL-----------------------KYIHLVTGED 62 (148)
T ss_pred HHHHHhCCc-eEEEEeCccccc----hHHHHHHHHHHHHHhcCccce-----------------------EEEEEEecCC
Confidence 479995443 389999999732 23355555555 33321111 2233 78884
Q ss_pred CCCchhhHhhhhhhhhhhh--CcEEeeccccCCCCCCCCceeeEEEEeCCceEEEcCCC
Q 031590 85 EDDYEKETKAIMDDLAILT--GGQVLNGATNVSFMPLMLGSCKELLYQMTRWLSLVGLV 141 (157)
Q Consensus 85 ~~gfG~~rk~~L~DiAilT--Gg~vi~~~~l~~v~~~~LG~a~~v~vtkd~T~i~~g~g 141 (157)
+ .-++.+++.|+-|+--. ++-.+ ....++ + -..++|. +.+.+.|.=|.|
T Consensus 63 ~-~~~~~Q~~~l~~i~~sl~~~gI~~-~~~f~~-t----iHDR~I~-~~nGw~IkigRG 113 (148)
T cd02685 63 E-DNGKQQIEALEEIKQSLASHGVEF-TWEFSD-T----IHDREIR-TDNGWIIKIGRG 113 (148)
T ss_pred C-CCHHHHHHHHHHHHHHHHhCCcEE-EEEECC-C----ccceEEE-ecCCeEEEECCc
Confidence 3 34677788887776432 22222 122221 1 2345554 445677776665
No 63
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=25.74 E-value=1.2e+02 Score=27.93 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=35.3
Q ss_pred cC-Cccccccc-CCCCCceEEeeC------------c-------eEEeecccccchHHHHHHH--HhhcCCceEEEeccc
Q 031590 3 LK-WRPVSSYF-TNQKAKDCVLEN------------P-------FLLILENMIVSKNIVEQAI--AQADSRPLLIVAEDV 59 (157)
Q Consensus 3 fd-rGylSpyf-td~~~~~~~le~------------p-------~IL~td~kIs~~~~ilp~L--~~~~~rpLlIIAedv 59 (157)
|| |||.|-|| ++..+.+...+. - ++ +.|+...+.+++.... ..+..+|=++|++.-
T Consensus 142 yd~~~~~s~~~~~~~~~~~i~~~~~~~~~G~~~~e~~~~~~~~~~~-~~~~~f~~~~~l~~~f~~~L~~~~~di~i~dr~ 220 (500)
T TIGR02918 142 YSYTRYFSEYYAPADNKAKLYQRTFYNEDGSIAYEEYIDGDESIFV-FPDKILYSKQELIAYFLKQLNLTKKDIIILDRS 220 (500)
T ss_pred EeCCceEEEEccCCCcCCcEEEEEEECCCCcEEEEeeeCCCeeEEE-EeeeEECCHHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 45 89999999 653322333322 2 22 3488888889988877 334455666777654
Q ss_pred c
Q 031590 60 E 60 (157)
Q Consensus 60 ~ 60 (157)
.
T Consensus 221 ~ 221 (500)
T TIGR02918 221 T 221 (500)
T ss_pred c
Confidence 4
No 64
>PF03103 DUF243: Domain of unknown function (DUF243); InterPro: IPR004145 This domain is only found in fly proteins. It is found associated with YLP motifs (IPR004019 from INTERPRO) in some proteins.
Probab=25.67 E-value=57 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.3
Q ss_pred hhhhhhcccccCcceEE-eecC
Q 031590 63 LIGSLILGKTCLQNKVS-IAKP 83 (157)
Q Consensus 63 aL~tLv~Nk~rg~l~v~-VkaP 83 (157)
.-..++.+..+..++|+ ||+|
T Consensus 20 ~~~~~~~~~~~K~yrVvFIKaP 41 (97)
T PF03103_consen 20 QAAHQLAGPPQKHYRVVFIKAP 41 (97)
T ss_pred cchhhhcccCCCCcEEEEEECC
Confidence 34568899999999999 9999
No 65
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=25.30 E-value=40 Score=20.46 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=6.7
Q ss_pred Cccccccc-CCCC
Q 031590 5 WRPVSSYF-TNQK 16 (157)
Q Consensus 5 rGylSpyf-td~~ 16 (157)
++|++||. -+..
T Consensus 9 ~aylNp~~~~~~~ 21 (40)
T PF04810_consen 9 RAYLNPFCQFDDG 21 (40)
T ss_dssp --BS-TTSEEETT
T ss_pred CCEECCcceEcCC
Confidence 68999999 5444
No 66
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.82 E-value=64 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=35.3
Q ss_pred EEeeCceEEeecccccch-----HHHHHHH---HhhcCCceEEEeccccc
Q 031590 20 CVLENPFLLILENMIVSK-----NIVEQAI---AQADSRPLLIVAEDVED 61 (157)
Q Consensus 20 ~~le~p~IL~td~kIs~~-----~~ilp~L---~~~~~rpLlIIAedv~~ 61 (157)
+-|..|-+|+-|.+++++ +|++|.| ..+.+-|.|-+.-.+++
T Consensus 142 ALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 142 ALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 457899999999999986 4899999 45567799999988865
No 67
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=24.43 E-value=1e+02 Score=27.72 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=50.2
Q ss_pred eeCceEEeecccccchHHHHHHH--HhhcCCc--eEEEeccccc---chhhhhhcccccCcceEEeecCCCCCchhhHhh
Q 031590 22 LENPFLLILENMIVSKNIVEQAI--AQADSRP--LLIVAEDVED---KLIGSLILGKTCLQNKVSIAKPHEDDYEKETKA 94 (157)
Q Consensus 22 le~p~IL~td~kIs~~~~ilp~L--~~~~~rp--LlIIAedv~~---eaL~tLv~Nk~rg~l~v~VkaP~~~gfG~~rk~ 94 (157)
...|.||=|- +.++.|+-+++ +.+.+.| .|.-|-.-=+ |=...-.+++++-.|++.| ||.|.-..
T Consensus 146 ~~kPiIlSTG--ma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~v------GlSDHT~g 217 (347)
T COG2089 146 KGKPIILSTG--MATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIV------GLSDHTLG 217 (347)
T ss_pred cCCCEEEEcc--cccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCcc------ccccCccc
Confidence 3456666665 46777777777 5666666 4444433322 1222334445555552212 78888888
Q ss_pred hhhhhhhhh-CcEEeec-ccc
Q 031590 95 IMDDLAILT-GGQVLNG-ATN 113 (157)
Q Consensus 95 ~L~DiAilT-Gg~vi~~-~~l 113 (157)
.+-.+|.+. ||.||.. ++|
T Consensus 218 ~~a~l~AvALGA~viEKHFtl 238 (347)
T COG2089 218 ILAPLAAVALGASVIEKHFTL 238 (347)
T ss_pred hhHHHHHHHhcccceeeeeee
Confidence 888887766 9999977 544
No 68
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=23.51 E-value=87 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.8
Q ss_pred cchHHHHHHH--HhhcC-CceEEEecccc
Q 031590 35 VSKNIVEQAI--AQADS-RPLLIVAEDVE 60 (157)
Q Consensus 35 s~~~~ilp~L--~~~~~-rpLlIIAedv~ 60 (157)
+++++|.+.+ ..+.+ ||=+|||+-+-
T Consensus 214 ~d~~~i~~a~~~~~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 214 HDIEEIVEALEKAKGSKGRPTVIIAKTVK 242 (243)
T ss_pred cCHHHHHHHHHhhhccCCCCeEEEEeccc
Confidence 5688999999 55534 99999998764
No 69
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=23.13 E-value=42 Score=30.72 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=43.1
Q ss_pred hcCCceEEEeccccc-----chhhhhhcccccCc----ceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEee
Q 031590 47 ADSRPLLIVAEDVED-----KLIGSLILGKTCLQ----NKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLN 109 (157)
Q Consensus 47 ~~~rpLlIIAedv~~-----eaL~tLv~Nk~rg~----l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~ 109 (157)
+...++.+..++++. ++...++.|+++.. .+++ ++. ++++..+.+|.|-.|++..++-.
T Consensus 244 ~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~----~i~d~a~~~l~~~~I~~~~~v~~ 312 (522)
T cd03340 244 AEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKL----PIGDLATQYFADRDIFCAGRVPE 312 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC----CCcHHHHHHHHHCCcEEEEeCCH
Confidence 334577777777655 55566778887654 7777 554 58999999999999987776643
No 70
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=22.68 E-value=37 Score=31.29 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=34.5
Q ss_pred hhhcccccCcceEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEE
Q 031590 66 SLILGKTCLQNKVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKEL 127 (157)
Q Consensus 66 tLv~Nk~rg~l~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v 127 (157)
.|++|--...|.-+ |-|=..-.| +-.|.+|..|||.+.|- +++.+...||+|+.+
T Consensus 289 QLiYnyPeqLf~dagi~aIEHADF-----dGiERLalvtGGeI~ST--Fd~p~~~klG~C~~I 344 (527)
T KOG0363|consen 289 QLIYNYPEQLFADAGIMAIEHADF-----DGIERLALVTGGEIVST--FDNPELVKLGECDLI 344 (527)
T ss_pred hHhhcCHHHHHhhcCcceeecccc-----hhHHHHhhcccceeeec--cCCcchhccccchhh
Confidence 36666555555444 433300033 22577999999998875 566677778888754
No 71
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=21.96 E-value=80 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=8.7
Q ss_pred CceEEEecccccchh
Q 031590 50 RPLLIVAEDVEDKLI 64 (157)
Q Consensus 50 rpLlIIAedv~~eaL 64 (157)
-.|||+|+|.+++.-
T Consensus 34 ~~lVI~A~D~s~~~k 48 (104)
T PRK05583 34 VYLIIISNDISENSK 48 (104)
T ss_pred ceEEEEeCCCCHhHH
Confidence 366666666665443
No 72
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.79 E-value=83 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=15.5
Q ss_pred hcC-CceEEEecccccchhhhh
Q 031590 47 ADS-RPLLIVAEDVEDKLIGSL 67 (157)
Q Consensus 47 ~~~-rpLlIIAedv~~eaL~tL 67 (157)
+.+ --|+|||+|.+++.-..+
T Consensus 21 k~gkakLViiA~Da~~~~~k~i 42 (82)
T PRK13601 21 TNCNVLQVYIAKDAEEHVTKKI 42 (82)
T ss_pred HcCCeeEEEEeCCCCHHHHHHH
Confidence 434 489999999997665544
No 73
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=21.60 E-value=1.8e+02 Score=31.19 Aligned_cols=98 Identities=22% Similarity=0.296 Sum_probs=65.5
Q ss_pred CCceEEeeCceEEeec---------ccccchHHHHH----HH---H--hhcCC-ceEEEecccccchhhhhhcccccCcc
Q 031590 16 KAKDCVLENPFLLILE---------NMIVSKNIVEQ----AI---A--QADSR-PLLIVAEDVEDKLIGSLILGKTCLQN 76 (157)
Q Consensus 16 ~~~~~~le~p~IL~td---------~kIs~~~~ilp----~L---~--~~~~r-pLlIIAedv~~eaL~tLv~Nk~rg~l 76 (157)
++|.-++++|-||+.- .+++++++++. .| + ....| -+|.+-..|++-|...|. -+|..
T Consensus 392 k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~---~k~I~ 468 (1598)
T KOG0230|consen 392 KRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLL---DKGIS 468 (1598)
T ss_pred hhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhh---ccCeE
Confidence 5678889999999864 34555544331 12 2 23345 567777888888877663 35655
Q ss_pred eEE-eecCCCCCchhhHhhhhhhhhhhhCcEEeeccccCCCCCCCCceeeEEEE
Q 031590 77 KVS-IAKPHEDDYEKETKAIMDDLAILTGGQVLNGATNVSFMPLMLGSCKELLY 129 (157)
Q Consensus 77 ~v~-VkaP~~~gfG~~rk~~L~DiAilTGg~vi~~~~l~~v~~~~LG~a~~v~v 129 (157)
-|+ ||-+ .|+-||-.||+..+..+. .++..-||-|....+
T Consensus 469 lvlnvK~s-----------~leRIsR~tga~I~~siD--slt~~klg~C~~F~v 509 (1598)
T KOG0230|consen 469 LVLNVKRS-----------LLERISRCTGADIVPSVD--SLTSQKLGYCELFRV 509 (1598)
T ss_pred EEEeccHH-----------HHHHHHHHhcCceecchh--hhhccccCCCccHhh
Confidence 555 8877 789999999998876633 256666777765544
No 74
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=20.95 E-value=1e+02 Score=22.02 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=16.1
Q ss_pred ceeeEEEEeCCceEEEcC
Q 031590 122 GSCKELLYQMTRWLSLVG 139 (157)
Q Consensus 122 G~a~~v~vtkd~T~i~~g 139 (157)
|++.|+.|.+|+.+++.=
T Consensus 29 GNv~Ri~Ikk~~~tll~i 46 (84)
T PF14242_consen 29 GNVTRIIIKKDDKTLLDI 46 (84)
T ss_pred cCeEEEEEEcCCeEEEEe
Confidence 999999999999998853
No 75
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=20.77 E-value=1.3e+02 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.3
Q ss_pred eeCceEEeecccccch-----HHHHHHH--HhhcCCceEEEecccc
Q 031590 22 LENPFLLILENMIVSK-----NIVEQAI--AQADSRPLLIVAEDVE 60 (157)
Q Consensus 22 le~p~IL~td~kIs~~-----~~ilp~L--~~~~~rpLlIIAedv~ 60 (157)
+.+|-+|+.|.+-+.+ +.+..+| ..+.++.++++.-|.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 4578888888877654 3455555 4445677777776654
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=20.22 E-value=1.3e+02 Score=27.68 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.6
Q ss_pred cCCceEEEecccccchhhhhhcccccCcceEE
Q 031590 48 DSRPLLIVAEDVEDKLIGSLILGKTCLQNKVS 79 (157)
Q Consensus 48 ~~rpLlIIAedv~~eaL~tLv~Nk~rg~l~v~ 79 (157)
.++||+++||.==+.||..++.-++-|.++..
T Consensus 406 ~~hplivv~~~D~gKaLGq~l~~~l~~~~pli 437 (473)
T COG4819 406 NPHPLIVVAEQDFGKALGQLLRPQLPGQLPLI 437 (473)
T ss_pred CCCcEEEEEhhHHHHHHHHHhcccCCCCccEE
Confidence 45799999999999999999999999888764
Done!