BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031592
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 9 PRRAHKERAQPQSRKKFGLLEKHKDYVIR 37
P E+ QP+ R FG++ K ++Y+++
Sbjct: 338 PSEETPEKPQPRRRSSFGIMIKAEEYILK 366
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 9 PRRAHKERAQPQSRKKFGLLEKHKDYVIR 37
P E+ QP+ R FG++ K ++Y+++
Sbjct: 121 PSEETPEKPQPRRRSSFGIMIKAEEYILK 149
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 54 KAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQ---KLQSER 110
KA NPD Y K+ + VH E E KY +E L + +Q YVL+ K +
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHA-EAEGEKYIEEILDQISSQP--YVLRYAAKFYRRK 262
Query: 111 NKIEKLTTML-HSLDNNPSS 129
N K +L +L+ P+S
Sbjct: 263 NSWNKALELLKKALEVTPTS 282
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 54 KAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQ---KLQSER 110
KA NPD Y K+ + VH E E KY +E L + +Q YVL+ K +
Sbjct: 206 KAVTLNPDNSYIKVFLALKLQDVHA-EAEGEKYIEEILDQISSQP--YVLRYAAKFYRRK 262
Query: 111 NKIEKLTTML-HSLDNNPSS 129
N K +L +L+ P+S
Sbjct: 263 NSWNKALELLKKALEVTPTS 282
>pdb|2LHC|A Chain A, Ga98 Solution Structure
Length = 56
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVHRLEGEANKYTQEE 90
KEE+I+ L + E YFK+I KTV+GV L+ E +T E
Sbjct: 11 QAKEEAIKELVD----AGTAEKYFKLIANAKTVEGVWTLKDEIKTFTVTE 56
>pdb|3UYC|A Chain A, Designed Protein Ke59 R8_27A
pdb|3UYC|B Chain B, Designed Protein Ke59 R8_27A
Length = 249
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 77 HRLEG-EANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKL 116
H LE E NK Q +L+ M D+ V+ SERN+IE+L
Sbjct: 182 HDLETLEINKENQRKLISMVPSDVVKVVASGISERNEIEEL 222
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 112 KIEKLTTMLHSLDNNPSSR 130
K++++ +LH L NNPSSR
Sbjct: 123 KVDQVDYLLHQLKNNPSSR 141
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 112 KIEKLTTMLHSLDNNPSSR 130
K++++ +LH L NNPSSR
Sbjct: 122 KVDQVDYLLHQLKNNPSSR 140
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 81 GEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKL 116
GE NK Q +L+ M ++ V ++ SERN+IE+L
Sbjct: 187 GEINKENQRKLISMIPSNVVKVAKEGISERNEIEEL 222
>pdb|2WV9|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Murray
Valley Encephalitis Virus
Length = 673
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 69 KTKTVDGVHRLEGEANKYTQEELMLMKTQDI 99
KT T+DG +RL GE K E L+KT D+
Sbjct: 570 KTYTMDGEYRLRGEERKTFLE---LIKTADL 597
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 109 ERNKIEKLTTMLHSLDN----NPSSRHVYFAEDRFVLSKLSFLCEDDNILD 155
E N+ KL ++ LD+ NP +R + FA+ R ++S L E++ IL+
Sbjct: 608 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 658
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 109 ERNKIEKLTTMLHSLDN----NPSSRHVYFAEDRFVLSKLSFLCEDDNILD 155
E N+ KL ++ LD+ NP +R + FA+ R ++S L E++ IL+
Sbjct: 608 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 658
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 109 ERNKIEKLTTMLHSLDN----NPSSRHVYFAEDRFVLSKLSFLCEDDNILD 155
E N+ KL ++ LD+ NP +R + FA+ R ++S L E++ IL+
Sbjct: 367 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 417
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 413 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 472
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 473 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 529
>pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|C Chain C, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
pdb|1H1C|D Chain D, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima
Length = 335
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 46 ESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVL 103
E I R+ + AF DE Y++ VD + + E A T + + Q +GYV+
Sbjct: 158 EEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV 215
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 26.2 bits (56), Expect = 7.8, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 242 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 301
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 302 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 358
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 242 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 301
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 302 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 358
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 242 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 301
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 302 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 358
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 243 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 302
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 303 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 359
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 242 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 301
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 302 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 358
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 26.2 bits (56), Expect = 8.1, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 291 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 350
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 351 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 407
>pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|B Chain B, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|C Chain C, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU1|D Chain D, Complex Of Histidinol-Phosphate Aminotransferase (Hisc)
From Thermotoga Maritima (Apo-Form)
pdb|1UU2|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU2|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|B Chain B, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|C Chain C, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
pdb|1UU0|D Chain D, Histidinol-Phosphate Aminotransferase (Hisc) From
Thermotoga Maritima (Apo-Form)
Length = 335
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 46 ESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVL 103
E I R+ + AF DE Y++ VD + + E A T + + Q +GYV+
Sbjct: 158 EEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV 215
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 33 DYVIRAKAYHKKEESIRRLKEKAAFRNP-DEFYFKMIKTK-TVDGVHRLEGEANKY---- 86
+ VI+ + H K+E I K+ + E KM+ K + +H+ EA++
Sbjct: 295 EVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPR 354
Query: 87 --TQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVL 141
T E L+ K +D+ + ++ KL L L+ NP S + DR +L
Sbjct: 355 DITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 411
>pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|B Chain B, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|C Chain C, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
pdb|2F8J|D Chain D, Crystal Structure Of Histidinol-phosphate Aminotransferase
(ec 2.6.1.9) (imidazole Acetol-phosphate Transferase)
(tm1040) From Thermotoga Maritima At 2.40 A Resolution
Length = 347
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 46 ESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVL 103
E I R+ + AF DE Y++ VD + + E A T + + Q +GYV+
Sbjct: 170 EEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVV 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,243,428
Number of Sequences: 62578
Number of extensions: 152734
Number of successful extensions: 575
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 46
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)