Query 031592
Match_columns 157
No_of_seqs 110 out of 228
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jws_A GA88; evolution, foldin 33.1 15 0.00052 24.3 1.1 33 42-78 11-44 (56)
2 1ex0_A Coagulation factor XIII 16.3 25 0.00087 33.3 -0.5 30 128-157 188-238 (731)
3 2fs1_A PSD-1; solution structu 15.4 54 0.0019 21.6 1.1 31 43-77 12-43 (56)
4 3hiu_A Uncharacterized protein 14.4 1.4E+02 0.0047 22.9 3.3 54 102-155 42-95 (166)
5 1q2z_A ATP-dependent DNA helic 12.7 2.7E+02 0.0091 19.9 4.3 46 46-92 68-113 (120)
6 2l9s_A PHD finger protein 12; 12.0 1.2E+02 0.0042 19.0 2.0 16 48-63 14-29 (45)
7 1gjs_A Immunoglobulin G bindin 11.4 83 0.0028 21.2 1.1 32 42-77 22-54 (65)
8 4i1l_A Scurfin, forkhead box p 10.5 3.3E+02 0.011 19.4 4.0 48 88-136 45-92 (93)
9 3a5t_A Transcription factor MA 9.3 5.4E+02 0.018 18.5 5.5 40 85-124 27-71 (107)
10 2ykt_A Brain-specific angiogen 8.9 2E+02 0.0069 23.3 2.7 26 31-56 127-152 (253)
No 1
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=33.10 E-value=15 Score=24.25 Aligned_cols=33 Identities=42% Similarity=0.642 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccc
Q 031592 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVHR 78 (157)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h~ 78 (157)
..|...|..|...+- -||||.-|| +++++||.-
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~a 44 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWT 44 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccc
Confidence 357777888877664 288888775 778888764
No 2
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=16.33 E-value=25 Score=33.34 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCeEEEecCHHHHHhhh---------------------hhcccccccccC
Q 031592 128 SSRHVYFAEDRFVLSKLS---------------------FLCEDDNILDLC 157 (157)
Q Consensus 128 ~nkH~vFvd~~~e~~~f~---------------------~~~~~d~~~~~~ 157 (157)
+..-.||.+++++.+++. +++=+|.|||+|
T Consensus 188 c~~D~Vyl~~E~~R~EYVLnd~G~Iy~Gs~~~i~~~~WnfGQFE~~ILd~c 238 (731)
T 1ex0_A 188 CEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTC 238 (731)
T ss_dssp CTTSTTCCCCHHHHHHHTTCCEEEEEEEETTEEEEEEEECCTTSTTHHHHH
T ss_pred CCCCceecCChHHhCcEeecCceEEEeCCcCccccccccccccccchHHHH
Confidence 445678899999988875 677889999987
No 3
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=15.45 E-value=54 Score=21.58 Aligned_cols=31 Identities=42% Similarity=0.768 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCcc
Q 031592 43 KKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (157)
Q Consensus 43 ~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (157)
.|+..|+.|..--. ..||+.-|| ++|.+||.
T Consensus 12 AKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~ 43 (56)
T 2fs1_A 12 AKEAAIKELKQYGI----GDYYIKLINNAKTVEGVE 43 (56)
T ss_dssp HHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHH
T ss_pred HHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHH
Confidence 45555555544322 678888876 77888865
No 4
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Probab=14.41 E-value=1.4e+02 Score=22.90 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEEecCHHHHHhhhhhcccccccc
Q 031592 102 VLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVLSKLSFLCEDDNILD 155 (157)
Q Consensus 102 v~~~~~~e~kKIekL~~~L~~~~~~~~nkH~vFvd~~~e~~~f~~~~~~d~~~~ 155 (157)
+...+..-...|++|+.=+..++..++..+-.---=-.|...+......|+++|
T Consensus 42 ~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k~~m~gli~e~~~~~~~~~~d~v~d 95 (166)
T 3hiu_A 42 IEQHVEETQQQSAGVQRCLELLNGSIPTAKGMLSSVLASMHAAGNSMMTDEVTK 95 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------------------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHhccccCcHHHH
Confidence 455666777889999998888886666655321111245566666677777776
No 5
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=12.71 E-value=2.7e+02 Score=19.88 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhccccCCcccccCcCCCCCHHHHH
Q 031592 46 ESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELM 92 (157)
Q Consensus 46 ~~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~~~~~~~~t~e~~k 92 (157)
.=|..|+.+...++=.+|...++..+. +-+..........|+++-+
T Consensus 68 ~Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA~ 113 (120)
T 1q2z_A 68 NFLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEAK 113 (120)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHHH
Confidence 347788888888887889887654321 1111111223467777754
No 6
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=12.04 E-value=1.2e+02 Score=19.01 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhCCCch
Q 031592 48 IRRLKEKAAFRNPDEF 63 (157)
Q Consensus 48 lk~Lr~KA~~rNpDEF 63 (157)
+..|=+.|...||-+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 4456678999999988
No 7
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=11.42 E-value=83 Score=21.25 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCcc
Q 031592 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (157)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (157)
..|+..|..|..--. ..||+.-|| ++|.+||.
T Consensus 22 eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~ 54 (65)
T 1gjs_A 22 EAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHH
Confidence 456666666654332 668888776 67777765
No 8
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=10.50 E-value=3.3e+02 Score=19.44 Aligned_cols=48 Identities=13% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCeEEEec
Q 031592 88 QEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAE 136 (157)
Q Consensus 88 ~e~~kl~ktQDl~Yv~~~~~~e~kKIekL~~~L~~~~~~~~nkH~vFvd 136 (157)
..|.+ ++.|=+..|...+..|+.++.-+..-|++=.+.+...++++.|
T Consensus 45 ~AQcr-vQ~qvVq~LE~QL~kEreRLqAM~~HL~~K~~~~k~~~~~~~~ 92 (93)
T 4i1l_A 45 KAQCL-LQREVVQSLEQQLELEKEKLGAMQAHLAGKMALAKAPSVASMD 92 (93)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCC-------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCCCcccccC
Confidence 33443 5777888999999999999999998888755545555555543
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=9.31 E-value=5.4e+02 Score=18.46 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHhhhccCC
Q 031592 85 KYTQEELMLMKTQ-----DIGYVLQKLQSERNKIEKLTTMLHSLD 124 (157)
Q Consensus 85 ~~t~e~~kl~ktQ-----Dl~Yv~~~~~~e~kKIekL~~~L~~~~ 124 (157)
.||.+++..||.+ +=+|-+..|..-..+++.|+.+...+.
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~ 71 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQ 71 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998876 889999999999999999987666554
No 10
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=8.93 E-value=2e+02 Score=23.26 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.1
Q ss_pred cccHHHHHHHHhHHHHHHHHHHHHHH
Q 031592 31 HKDYVIRAKAYHKKEESIRRLKEKAA 56 (157)
Q Consensus 31 kKDY~~RA~dy~~K~~~lk~Lr~KA~ 56 (157)
.++|+.++.++.+.+..+++|+.|+.
T Consensus 127 ~~e~k~~~~~l~K~~~e~~kl~KK~k 152 (253)
T 2ykt_A 127 QTEQRSKGDALDKCQAELKKLRKKSQ 152 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHhHHHHHHHHHHHHHhhcc
Confidence 47888899999999999999998876
Done!