Query 031592
Match_columns 157
No_of_seqs 110 out of 228
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 03:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031592.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031592hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 35.2 9.3 0.00068 23.3 1.9 33 42-77 9-42 (53)
2 d1gjsa_ a.8.1.2 (A:) IgG bindi 34.8 5.9 0.00043 25.3 0.9 45 29-77 9-54 (65)
3 d1ffgb_ d.58.24.1 (B:) CheY-bi 13.6 19 0.0014 23.0 0.0 31 111-141 12-47 (68)
4 d2cqpa1 d.58.7.1 (A:917-1002) 10.3 45 0.0033 19.9 1.1 13 125-137 4-16 (86)
5 d1rw2a_ a.118.19.1 (A:) C-term 9.1 1.3E+02 0.0097 20.8 3.5 43 47-92 100-144 (152)
6 d1s7oa_ a.4.13.3 (A:) Hypothet 8.6 2.1E+02 0.015 18.4 4.2 41 84-124 31-71 (106)
7 d1wela1 d.58.7.1 (A:412-523) R 7.4 63 0.0046 20.4 0.9 10 127-136 15-24 (112)
8 d1nyna_ d.235.1.1 (A:) Hypothe 7.0 1.1E+02 0.0079 20.6 2.1 20 128-147 13-32 (111)
9 d1t5ia_ c.37.1.19 (A:) Spliceo 7.0 1.6E+02 0.012 19.6 3.1 33 110-145 12-44 (168)
10 d1weza_ d.58.7.1 (A:) Heteroge 6.6 78 0.0056 19.6 1.0 23 127-155 12-34 (102)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=35.19 E-value=9.3 Score=23.34 Aligned_cols=33 Identities=39% Similarity=0.678 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCcc
Q 031592 42 HKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (157)
Q Consensus 42 ~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (157)
+.|++.|+.|++-- =..+|||..|| .+|+.||.
T Consensus 9 ~AKe~AI~eLK~~G---Its~~y~~~InkaKTVEgV~ 42 (53)
T d2j5ya1 9 NAKEDAIAELKKAG---ITSDFYFNAINKAKTVEEVN 42 (53)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHcC---ccHHHHHHHHHhhhhHHHHH
Confidence 45777777776532 23679998887 67777765
No 2
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=34.76 E-value=5.9 Score=25.26 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=32.5
Q ss_pred cccccHHHHHHHHhHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCcc
Q 031592 29 EKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK-TKTVDGVH 77 (157)
Q Consensus 29 EKkKDY~~RA~dy~~K~~~lk~Lr~KA~~rNpDEFyf~M~~-sk~~~G~h 77 (157)
+||-|-+.-+.=-+.|+..++.|++--- .+||+..|| .||+.||.
T Consensus 9 ~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~ 54 (65)
T d1gjsa_ 9 AQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVK 54 (65)
T ss_dssp SSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHH
Confidence 4555555555556788888998887655 489999987 67777764
No 3
>d1ffgb_ d.58.24.1 (B:) CheY-binding domain of CheA {Escherichia coli [TaxId: 562]}
Probab=13.60 E-value=19 Score=22.95 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=22.6
Q ss_pred HHHHHHHhhhccCCC-----CCCCCeEEEecCHHHH
Q 031592 111 NKIEKLTTMLHSLDN-----NPSSRHVYFAEDRFVL 141 (157)
Q Consensus 111 kKIekL~~~L~~~~~-----~~~nkH~vFvd~~~e~ 141 (157)
+.++-|.++|..++. ...+.+.+.+++....
T Consensus 12 kd~~lL~eELgnLG~v~~~~~~~~~l~~~L~T~~s~ 47 (68)
T d1ffgb_ 12 GEVDLLEEELGHLTTLTDVVKGADSLSAILPGDIAE 47 (68)
T ss_dssp THHHHHHHHHHHHSCCEEEEECSSCEEEEECSCSCH
T ss_pred HHHHHHHHHHhccceEEeeccCCCeEEEEEecCCCh
Confidence 567778888888873 4567899999874433
No 4
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.29 E-value=45 Score=19.87 Aligned_cols=13 Identities=0% Similarity=0.089 Sum_probs=9.2
Q ss_pred CCCCCCeEEEecC
Q 031592 125 NNPSSRHVYFAED 137 (157)
Q Consensus 125 ~~~~nkH~vFvd~ 137 (157)
+..++.++|||.+
T Consensus 4 ~g~p~~~~l~v~n 16 (86)
T d2cqpa1 4 SGKPGPTIIKVQN 16 (86)
T ss_dssp CCCCSSEEEEEES
T ss_pred CCCCCCCEEEEEC
Confidence 3456788999864
No 5
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.06 E-value=1.3e+02 Score=20.84 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhccccCCcccccCc--CCCCCHHHHH
Q 031592 47 SIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGE--ANKYTQEELM 92 (157)
Q Consensus 47 ~lk~Lr~KA~~rNpDEFyf~M~~sk~~~G~h~~~~~--~~~~t~e~~k 92 (157)
=|..|+.++..+|-.+|....+..+. | .|...+ ....|.++.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l--g-LIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI--T-LITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC--S-SCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC--c-cCChhhcccCCCCHHHHH
Confidence 46778888888887788876654433 2 233332 2467888765
No 6
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=8.64 E-value=2.1e+02 Score=18.40 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=34.1
Q ss_pred CCCCHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 031592 84 NKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD 124 (157)
Q Consensus 84 ~~~t~e~~kl~ktQDl~Yv~~~~~~e~kKIekL~~~L~~~~ 124 (157)
..+|..+|.-.-.=-.+-|......-.+++....+.||+++
T Consensus 31 ~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~~e~kL~l~~ 71 (106)
T d1s7oa_ 31 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMYS 71 (106)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHChHH
Confidence 45888888876666778888899999999999999999865
No 7
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.43 E-value=63 Score=20.43 Aligned_cols=10 Identities=0% Similarity=0.105 Sum_probs=7.3
Q ss_pred CCCCeEEEec
Q 031592 127 PSSRHVYFAE 136 (157)
Q Consensus 127 ~~nkH~vFvd 136 (157)
....++|||-
T Consensus 15 ~~~~~~i~v~ 24 (112)
T d1wela1 15 HEAGFCVYLK 24 (112)
T ss_dssp CCCCCEEEEE
T ss_pred CCCCeEEEEe
Confidence 3457899985
No 8
>d1nyna_ d.235.1.1 (A:) Hypothetical protein Yhr087W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.03 E-value=1.1e+02 Score=20.56 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=16.7
Q ss_pred CCCeEEEecCHHHHHhhhhh
Q 031592 128 SSRHVYFAEDRFVLSKLSFL 147 (157)
Q Consensus 128 ~nkH~vFvd~~~e~~~f~~~ 147 (157)
...-+|||+|.+.+..|..+
T Consensus 13 ~~d~~V~v~dp~~v~~wr~g 32 (111)
T d1nyna_ 13 NTDLIVFAASEELVDEYLKN 32 (111)
T ss_dssp SSEEEEEESCHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHcC
Confidence 34678999999999999865
No 9
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.02 E-value=1.6e+02 Score=19.59 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhccCCCCCCCCeEEEecCHHHHHhhh
Q 031592 110 RNKIEKLTTMLHSLDNNPSSRHVYFAEDRFVLSKLS 145 (157)
Q Consensus 110 ~kKIekL~~~L~~~~~~~~nkH~vFvd~~~e~~~f~ 145 (157)
..|++.|..-|... ..++-+||+.+.+.++...
T Consensus 12 ~~K~~~L~~ll~~~---~~~k~iIF~~~~~~~~~l~ 44 (168)
T d1t5ia_ 12 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALA 44 (168)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCeEEEEEeeeecchhhh
Confidence 45566666555443 3568999999998887654
No 10
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.61 E-value=78 Score=19.56 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=13.0
Q ss_pred CCCCeEEEecCHHHHHhhhhhcccccccc
Q 031592 127 PSSRHVYFAEDRFVLSKLSFLCEDDNILD 155 (157)
Q Consensus 127 ~~nkH~vFvd~~~e~~~f~~~~~~d~~~~ 155 (157)
+...|+|||-+ +..++++++|.+
T Consensus 12 ~~~~~~v~v~n------Lp~~~te~dl~~ 34 (102)
T d1weza_ 12 STTGHCVHMRG------LPYRATENDIYN 34 (102)
T ss_dssp CSSSCEEEEES------CCTTCCHHHHHH
T ss_pred CCCCCEEEEeC------CCCcCCHHHHHH
Confidence 34578999853 444444444443
Done!