Query 031593
Match_columns 157
No_of_seqs 114 out of 575
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05514 HR_lesion: HR-like le 100.0 6.2E-36 1.3E-40 225.8 14.8 138 1-138 1-138 (138)
2 COG2259 Predicted membrane pro 99.8 2.1E-20 4.5E-25 142.1 13.4 123 2-150 13-141 (142)
3 PF07681 DoxX: DoxX; InterPro 99.5 7.7E-13 1.7E-17 91.4 10.5 80 5-104 2-85 (85)
4 PF02077 SURF4: SURF4 family; 99.3 3.4E-11 7.4E-16 100.4 12.6 106 3-146 154-264 (267)
5 PF02077 SURF4: SURF4 family; 98.4 1.2E-06 2.6E-11 73.3 8.7 108 2-137 20-129 (267)
6 PF07291 MauE: Methylamine uti 98.3 2.4E-05 5.3E-10 62.0 12.8 117 2-136 7-135 (184)
7 KOG3998 Putative cargo transpo 98.2 3.6E-06 7.8E-11 69.8 6.6 69 78-146 194-267 (270)
8 PF13564 DoxX_2: DoxX-like fam 98.0 7.9E-05 1.7E-09 53.1 8.9 73 8-103 2-81 (103)
9 KOG3998 Putative cargo transpo 97.9 3.4E-05 7.3E-10 64.1 7.5 108 2-137 23-132 (270)
10 COG4270 Predicted membrane pro 97.3 0.00081 1.8E-08 50.0 6.6 79 1-100 2-82 (131)
11 PF04173 DoxD: TQO small subun 96.9 0.042 9E-07 43.2 12.6 133 6-151 3-149 (167)
12 PF15111 TMEM101: TMEM101 prot 95.9 0.065 1.4E-06 44.4 8.6 108 5-135 136-248 (251)
13 PF04224 DUF417: Protein of un 95.8 0.22 4.9E-06 39.4 11.1 125 5-137 15-168 (175)
14 PF15111 TMEM101: TMEM101 prot 94.9 0.14 3E-06 42.4 7.6 67 65-138 49-121 (251)
15 PF13781 DoxX_3: DoxX-like fam 90.3 5.1 0.00011 28.7 10.4 67 53-130 27-99 (102)
16 COG3059 Predicted membrane pro 87.2 8.7 0.00019 30.4 9.3 125 6-138 18-172 (182)
17 smart00752 HTTM Horizontally T 85.3 15 0.00032 30.4 10.4 128 5-152 9-146 (271)
18 PF05090 VKG_Carbox: Vitamin K 76.8 17 0.00036 32.7 8.4 118 7-152 2-128 (446)
19 COG2270 Permeases of the major 37.4 3.2E+02 0.0069 24.8 9.9 112 7-157 254-376 (438)
20 PF11694 DUF3290: Protein of u 37.4 1.8E+02 0.0038 22.3 6.7 41 86-127 49-89 (149)
21 PRK02237 hypothetical protein; 36.3 1.5E+02 0.0033 21.8 5.8 40 65-106 8-56 (109)
22 PF11700 ATG22: Vacuole efflux 34.7 2.9E+02 0.0064 24.7 8.7 122 6-156 282-414 (477)
23 KOG2927 Membrane component of 30.5 92 0.002 27.5 4.5 25 86-110 235-261 (372)
24 KOG3713 Voltage-gated K+ chann 29.3 1E+02 0.0023 28.2 4.8 36 66-108 398-433 (477)
25 PF13748 ABC_membrane_3: ABC t 29.1 2E+02 0.0042 24.0 6.0 17 68-84 120-136 (237)
26 PF03390 2HCT: 2-hydroxycarbox 24.6 2.8E+02 0.0061 25.0 6.6 76 65-149 30-118 (414)
27 COG5373 Predicted membrane pro 22.5 3.5E+02 0.0076 26.8 7.1 59 85-155 870-930 (931)
28 TIGR02484 CitB CitB domain pro 21.0 1.1E+02 0.0024 27.1 3.3 46 89-140 226-271 (372)
29 PRK10209 acid-resistance membr 20.0 4.3E+02 0.0093 20.6 7.1 20 9-28 82-101 (190)
No 1
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=100.00 E-value=6.2e-36 Score=225.83 Aligned_cols=138 Identities=72% Similarity=1.218 Sum_probs=133.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593 1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF 80 (157)
Q Consensus 1 M~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll 80 (157)
|+.+.++||++++++|+.|+|||+.++.+++++++|++.|+++.+.+++.++.|+++|+.|.+.++.++|++|.+||+++
T Consensus 1 M~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLF 80 (138)
T PF05514_consen 1 MGFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILF 80 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 031593 81 IFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGM 138 (157)
Q Consensus 81 ~~G~r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~ 138 (157)
++|.++||.+|++|++++|++.|||||++.+.+|+.+++++|+||++++|+||+++++
T Consensus 81 i~gss~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFlgM 138 (138)
T PF05514_consen 81 IFGSSFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFLGM 138 (138)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888888899999999999999999998874
No 2
>COG2259 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=2.1e-20 Score=142.14 Aligned_cols=123 Identities=24% Similarity=0.331 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-ccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593 2 AFVSFVGRVLFASIFLLSAWQEFN-EFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF 80 (157)
Q Consensus 2 ~~~~~igRvlla~~Fi~sG~~kl~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll 80 (157)
+...++.|++++.+|+.+|++|+. +++ ++.+|+++ .|.|.|.+ .+..++..|++||+++
T Consensus 13 ~~~lli~Rl~l~~~fi~~G~~K~~~~~~---------------g~~~~~~~-~g~p~~~~----~a~~~~~~El~~glll 72 (142)
T COG2259 13 DLGLLILRLLLALIFIVSGLGKLFGGLA---------------GTIQYFES-LGLPPPTL----LAILAAILELVGGLLL 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHccCcH---------------HHHHHHHH-cCCChHHH----HHHHHHHHHHHHHHHH
Confidence 467899999999999999999999 565 46677776 99999987 7888999999999999
Q ss_pred HHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhhhhcc
Q 031593 81 IFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQLKRK 150 (157)
Q Consensus 81 ~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~~~~~ 150 (157)
++|. |++|+.+++|++++++..|.+|+... . .+ ++|.+|++++|+++.++ ++++|+|+|..++.
T Consensus 73 llGl~tr~aA~~l~~~~l~a~~~~h~~~~~~~-~----~~-~~~~~~l~~~~~~l~l~~~G~G~~sld~~~~~~~ 141 (142)
T COG2259 73 LLGLFTRLAALVLAVFMLVAIFAVHAFWGFFG-L----AN-NGFEKNLLLIGGLLLLAITGAGRLSLDAKLRKAA 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc-c----cc-hhHHHHHHHHHHHHHHHhcCCcccccchhccccc
Confidence 9999 99999999999999999999997411 1 11 68999999999999988 56999999877654
No 3
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=99.47 E-value=7.7e-13 Score=91.39 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031593 5 SFVGRVLFASIFLLSAWQEFNE--FGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF 82 (157)
Q Consensus 5 ~~igRvlla~~Fi~sG~~kl~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~ 82 (157)
.++.|++++..|+.+|++|+.+ ++ ...+++++ .|.|.|+. ....++..|+++|+++++
T Consensus 2 ll~~Ri~lg~~f~~~G~~K~~~~~~~---------------~~~~~~~~-~~~~~~~~----~~~~~~~~E~~~gl~l~~ 61 (85)
T PF07681_consen 2 LLILRILLGLVFLFHGLQKLFGFGPE---------------GFAGFFAP-FGLPPPGL----FAYLAGIAELVGGLLLLL 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHH-cCCCchHH----HHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999994 33 35667775 89888877 899999999999999999
Q ss_pred hh--HHHHHHHHHHHHHHHHHhcc
Q 031593 83 GS--SFGAYLLLLHQALATPILYD 104 (157)
Q Consensus 83 G~--r~~A~~La~f~v~tt~~~H~ 104 (157)
|+ |++|..++.+++.+++.+|+
T Consensus 62 G~~tr~aa~~~~~~~~~~~~~~H~ 85 (85)
T PF07681_consen 62 GLFTRLAALVLALFMLVATFFVHW 85 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99 99999999999999999995
No 4
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=99.31 E-value=3.4e-11 Score=100.44 Aligned_cols=106 Identities=21% Similarity=0.357 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031593 3 FVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF 82 (157)
Q Consensus 3 ~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~ 82 (157)
.+.+.||+++.++|+.---.+ ++ . .-.....+..+..+++++
T Consensus 154 yl~LaGRill~~mFi~~~~~~---~s-------------------------------~----~~ii~~~~g~~l~i~v~v 195 (267)
T PF02077_consen 154 YLQLAGRILLVLMFITLLHFE---WS-------------------------------F----LRIILSIVGLALCILVVV 195 (267)
T ss_pred HHHHHhHHHHHHHHHHHHHHh---cc-------------------------------H----HHHHHHHHHHHHHHHHHH
Confidence 567899999999997543221 11 0 111223556666788899
Q ss_pred hh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhh
Q 031593 83 GS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQ 146 (157)
Q Consensus 83 G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~ 146 (157)
|+ |++|.+|++.+....+..|+||+++++...+.....+|++|+|++||+|++. +++.|+|++.
T Consensus 196 Gyktk~~A~~Lv~~L~~~n~~~n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~GpG~~S~D~~K 264 (267)
T PF02077_consen 196 GYKTKLSALLLVLWLSIYNVFVNNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNLGPGGLSLDEKK 264 (267)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHhc
Confidence 99 9999999999999999999999986543333344679999999999999998 5699999873
No 5
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=98.43 E-value=1.2e-06 Score=73.31 Aligned_cols=108 Identities=15% Similarity=0.207 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (157)
Q Consensus 2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~ 81 (157)
+.+..+||.++.+.|+-+|+.-..+|.+ =..|+....+.|.- =....+...++.|++|+++++
T Consensus 20 ~~LP~iaR~~iVsTFlED~lRi~~QW~~---------------Q~~yl~~~w~~~~~--la~lfl~~n~i~ql~gs~LVl 82 (267)
T PF02077_consen 20 PYLPTIARFLIVSTFLEDGLRIWFQWSD---------------QVDYLQNSWHCGWF--LAVLFLLLNIIGQLVGSILVL 82 (267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHhcCCChH--HHHHHHHHHHHHHhhhhheEe
Confidence 4678999999999999999999999983 34577765665432 122277788999999999999
Q ss_pred Hhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 031593 82 FGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIG 137 (157)
Q Consensus 82 ~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~ 137 (157)
+-+ ..+..+|....+.-+..++-+|+ ..-+++|+|++||++++.+
T Consensus 83 ~rk~~~~a~~~L~~vvvlQ~i~Y~l~~d-----------~~fllRnlsviGgLLLl~a 129 (267)
T PF02077_consen 83 LRKKVEYACGLLFGVVVLQTIAYGLLWD-----------LKFLLRNLSVIGGLLLLLA 129 (267)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Confidence 866 88888888888899999888883 4568999999999998884
No 6
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=98.29 E-value=2.4e-05 Score=62.04 Aligned_cols=117 Identities=23% Similarity=0.259 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (157)
Q Consensus 2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~ 81 (157)
|++.++.|.+++.+|+.+|+.|+.|++ .+.+.+.+ +.+ +|+.-...++..-..+|++.|++++
T Consensus 7 P~v~~~~r~~l~llf~~aai~Kl~d~~---------------~F~~~i~~-y~l-lP~~~~~~~A~~lP~~El~~gl~Ll 69 (184)
T PF07291_consen 7 PVVSLLLRLFLALLFLYAAISKLRDPE---------------AFAASIAA-YRL-LPDWLVRPVAWALPWLELALGLLLL 69 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCHH---------------HHHHHHHH-ccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999987 24445554 443 3432223356667799999999999
Q ss_pred Hhh--HH----HHHHHHHHHHHHHHHhccCCC-CC-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593 82 FGS--SF----GAYLLLLHQALATPILYDFYN-YD-----ADKKEFGQIFIKFTQSLALLGALLFFI 136 (157)
Q Consensus 82 ~G~--r~----~A~~La~f~v~tt~~~H~FW~-~~-----~~~~~~~~~~~~FlkNlal~GGll~~~ 136 (157)
++. +. ++.++.+|++..+....+-.. .+ .+.++ ..-..+..+|+.+++..+.++
T Consensus 70 ~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~idCGCfG~~~~~-~l~~~~v~Rn~~L~~~al~la 135 (184)
T PF07291_consen 70 FPPTRRWAALLAAALLLVFTAAIAINLLRGRTDIDCGCFGGGSSE-PLGWFLVVRNLLLAALALALA 135 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-ccCHHHHHHHHHHHHHHHHHH
Confidence 987 33 344556666555544332221 11 01111 223567899999987665544
No 7
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=3.6e-06 Score=69.80 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=56.0
Q ss_pred HHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCcchhh
Q 031593 78 LLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI---GMKNSMPRRQ 146 (157)
Q Consensus 78 lll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~---~~~~sl~~r~ 146 (157)
+++.+|+ ++.|++|.+-+....+...+||+.+.+..-...-...|+.++|++||+|++. ++..|+|++.
T Consensus 194 i~v~lGfktKl~a~llvl~L~~~ni~~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~~GpG~~SvDe~K 267 (270)
T KOG3998|consen 194 IFVWLGFKTKLFAILLVLWLFGYNILLNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVNTGPGGVSVDEKK 267 (270)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhhchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEEecCceeeecccc
Confidence 4556799 9999999999999999999999976643332234788999999999999888 4588888854
No 8
>PF13564 DoxX_2: DoxX-like family
Probab=97.97 E-value=7.9e-05 Score=53.06 Aligned_cols=73 Identities=19% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh----
Q 031593 8 GRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFG---- 83 (157)
Q Consensus 8 gRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~G---- 83 (157)
-+.+++..|+.+|+.|+.+.+. ..+.+++ .|. |+. ..+..+.+|++|+++++.+
T Consensus 2 l~~lla~~f~~~g~~kl~~~~~---------------~~~~~~~-~g~--p~~----~~~~~G~~Ei~gai~Ll~~~~~~ 59 (103)
T PF13564_consen 2 LTILLALFFLFSGVMKLFGPPE---------------MVEMFPK-LGY--PKW----FVYVVGVLEILGAIGLLIPLFWN 59 (103)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH---------------HHHHhHh-cCC--CHH----HHHHHHHHHHHHHHHHHHccccc
Confidence 4678999999999999997651 3333344 664 544 7889999999999999998
Q ss_pred -h--HHHHHHHHHHHHHHHHHhc
Q 031593 84 -S--SFGAYLLLLHQALATPILY 103 (157)
Q Consensus 84 -~--r~~A~~La~f~v~tt~~~H 103 (157)
+ .+++..+...++.+.. .|
T Consensus 60 ~~~~~~aa~~l~~~m~~A~~-~h 81 (103)
T PF13564_consen 60 PRLSPLAALGLLVLMLGAIY-TH 81 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HH
Confidence 4 6777777777766655 55
No 9
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=3.4e-05 Score=64.08 Aligned_cols=108 Identities=14% Similarity=0.239 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 031593 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (157)
Q Consensus 2 ~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~ 81 (157)
+.++.++|.++.+.|...|+.-+.+++. -.+|+....|.+-- -....+......|++|..+++
T Consensus 23 ~ylptlaRl~ivSTf~eD~lri~~qw~~---------------q~~~~~~~~~~~~~--~a~~~~~v~~l~~l~g~~liv 85 (270)
T KOG3998|consen 23 PYLPTLARLLIVSTFFEDGLRIVFQWPL---------------QVSYLNINWGCGYF--FAGVFTIVMVLGQLVGSVLIV 85 (270)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccHH---------------HHHHHHHhcCCCcH--HHHHHHHHHHHHHHhcceEee
Confidence 4678999999999999999999999983 34566655555422 111266677788999999988
Q ss_pred Hhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 031593 82 FGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIG 137 (157)
Q Consensus 82 ~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~ 137 (157)
.++ ..+..+|..-.+.-+..+|-+|+ ..-++.|.|++||++++.+
T Consensus 86 ~rkkv~~a~glL~~~~~lq~i~y~i~t~-----------~~~~~rN~sviggllLlla 132 (270)
T KOG3998|consen 86 LRKKVAYATGLLLFIVVLQTIAYSILTD-----------LVFLLRNISVIGGLLLLLA 132 (270)
T ss_pred eehhhHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Confidence 888 66777777778888888888883 4568999999999998774
No 10
>COG4270 Predicted membrane protein [Function unknown]
Probab=97.35 E-value=0.00081 Score=50.01 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 031593 1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF 80 (157)
Q Consensus 1 M~~~~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll 80 (157)
|+..+.+-|.+++.-|+.-|+.++...+. +.+.++ .-+|.| .+.+.+++++|+.||+.+
T Consensus 2 ~~~~R~L~~~~la~~f~~iGi~HF~r~eq---------------f~~IVP--p~vP~p----~tav~VSG~fEilgglaL 60 (131)
T COG4270 2 MNSARTLLLAFLAAAFLLIGIGHFTRPEQ---------------FRRIVP--PCVPLP----KTAVLVSGIFEILGGLAL 60 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhccchhh---------------hcccCC--CCCCcc----hhHHHHHHHHHHHhhhhh
Confidence 45667778889999999999999987661 211111 234555 347889999999999999
Q ss_pred HHhh--HHHHHHHHHHHHHHHH
Q 031593 81 IFGS--SFGAYLLLLHQALATP 100 (157)
Q Consensus 81 ~~G~--r~~A~~La~f~v~tt~ 100 (157)
++-. +.++.-|..+++..++
T Consensus 61 lip~~s~~aa~gl~~l~laVfP 82 (131)
T COG4270 61 LIPAPSQAAAWGLIILLLAVFP 82 (131)
T ss_pred hcCCcHHHHHhhHHHHHHHHcc
Confidence 9855 5555556555555443
No 11
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=96.89 E-value=0.042 Score=43.25 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhccc-cCCCccccccchhHHHhHHhHHhhc--------CCCCCchhHHHHHHHHHHHHHH
Q 031593 6 FVGRVLFASIFLLSAWQE-FNEFG-VDGGPAAKSLEPKFHIFSKHVLSHT--------GVQVPDVEIKYLVAAAIALKGI 75 (157)
Q Consensus 6 ~igRvlla~~Fi~sG~~k-l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~--------G~p~p~~~~~~~~~~~~~~el~ 75 (157)
+.-|+..+..|+..|+.| +.+++ -++. +...+.- .+.++++... =+.-|..... ....-..+|++
T Consensus 3 l~lR~~~G~~~~~ag~rr~il~p~kL~p~-~~~~vg~---k~~~~lp~a~~~~~~i~~~v~~~~~l~~-~lv~ft~vE~~ 77 (167)
T PF04173_consen 3 LALRLVVGWIWFSAGWRRKILNPAKLDPN-STSYVGG---KFNQFLPHALPIKPFIEFVVLPPDLLFG-FLVVFTIVEII 77 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcCCCCCC-cccHHHH---HHHHhCcCccccHHHHHHHhcCHHHHHH-HHHHHHHHHHH
Confidence 567999999999999985 55552 1111 1111111 1111222110 0112222222 22233467999
Q ss_pred HHHHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCcchhhhhccC
Q 031593 76 GGLLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI--GMKNSMPRRQLKRKV 151 (157)
Q Consensus 76 gGlll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~--~~~~sl~~r~~~~~~ 151 (157)
-|+++++|. |++++.-+...+.-. .-..|.-..-.+|.+ +.- +.+++|+.++. ++++|+|.-..+|.+
T Consensus 78 ~Gl~LilGL~TRLaa~~~~~l~~~i~--L~a~W~g~tc~dEw~--i~~----l~~a~~~~L~~~g~g~~sLD~~l~~k~~ 149 (167)
T PF04173_consen 78 FGLLLILGLFTRLAALVALGLALGIL--LSAGWLGTTCLDEWQ--INS----LMMAAGLTLFLTGGGRFSLDYYLLRKFP 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCCCCCccHHH--HHH----HHHHHHHHHHHhcCCccccHHHHHHHhh
Confidence 999999999 998887544433333 334785321112322 221 23455544444 568999986554443
No 12
>PF15111 TMEM101: TMEM101 protein family
Probab=95.88 E-value=0.065 Score=44.38 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q 031593 5 SFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS 84 (157)
Q Consensus 5 ~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~~G~ 84 (157)
.-.||+.++..-|.+++.-....++ -.+|+ ..+|--+. .+..-.+.-+++|+++.-|+
T Consensus 136 ~~tgq~~lgiyli~~Ay~L~~S~Ed---------------r~A~l---~hipgge~----~l~~~~v~y~~~gl~flsgy 193 (251)
T PF15111_consen 136 QSTGQVFLGIYLICVAYSLQHSKED---------------RLAYL---NHIPGGEV----MLQLLVVLYVVLGLAFLSGY 193 (251)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCHHH---------------HHHHH---hhCCCCch----hHHHHHHHHHHHHHHHHccc
Confidence 3468888888888888875554431 11122 23444444 45566688899999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhc---cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593 85 --SFGAYLLLLHQALATPILY---DFYNYDADKKEFGQIFIKFTQSLALLGALLFF 135 (157)
Q Consensus 85 --r~~A~~La~f~v~tt~~~H---~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~ 135 (157)
+..+-.|++-+.++++..- .||-... .-|+=+|+...-.|+++.|++++.
T Consensus 194 ~~~~~~~~lav~l~~~~l~iDgnv~yW~~s~-~vEfW~Qm~li~~nv~I~ga~~il 248 (251)
T PF15111_consen 194 YVKLAAQILAVLLPFVILLIDGNVKYWHKSR-RVEFWNQMKLIGRNVGIFGALLIL 248 (251)
T ss_pred cHHHHHHHHHHHHHHhheEEecchhhhhcch-hhhHHHHHHHHHhcchHhhheeee
Confidence 8888888888877777755 7886544 445566788899999999998865
No 13
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=95.82 E-value=0.22 Score=39.43 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHH--hHHhHHhhc---------CCCCCc-------hhHHHHH
Q 031593 5 SFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHI--FSKHVLSHT---------GVQVPD-------VEIKYLV 66 (157)
Q Consensus 5 ~~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~---------G~p~p~-------~~~~~~~ 66 (157)
..+.|+-+..+|+.-|..|+.+++. +...|.++. +.+++=+.. |- .|+ -+.+..-
T Consensus 15 ~~i~r~~i~iVl~WiG~lKf~~yEA------~gI~PlVanSPlmswlY~~~~~~~~~~~~~~-~~~n~~wh~~n~~~~~S 87 (175)
T PF04224_consen 15 YNILRLGIVIVLLWIGGLKFTPYEA------DGIVPLVANSPLMSWLYDVFSYKYHQNKEGE-VPENRAWHKANGTYGFS 87 (175)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHH------hhhhHHHhCCcHHHHHhhccchhhhhccccc-cHHHHHHHHhcCchhhH
Confidence 4578999999999999999999994 334444411 112211111 11 110 0234466
Q ss_pred HHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHhc----cCCCCChh--HHHHHHHHHHHHHHHHHHHHHHHH
Q 031593 67 AAAIALKGIGGLLFIFGS-----SFGAYLLLLHQALATPILY----DFYNYDAD--KKEFGQIFIKFTQSLALLGALLFF 135 (157)
Q Consensus 67 ~~~~~~el~gGlll~~G~-----r~~A~~La~f~v~tt~~~H----~FW~~~~~--~~~~~~~~~~FlkNlal~GGll~~ 135 (157)
..-+++|++.|+++++|. .....+++..+-.+|+.+- .-|....+ +.-... =+--+|++.++|+.+.+
T Consensus 88 ~~lG~vEi~~~ill~~g~~~p~~g~~G~ll~~~~flvTLSFL~TTP~vw~~~~GGFP~Lsg~-g~fllKDivlLa~~l~~ 166 (175)
T PF04224_consen 88 YLLGVVEIIIGILLLLGIWSPKLGILGGLLAFGTFLVTLSFLFTTPGVWVPSLGGFPYLSGA-GRFLLKDIVLLAASLVL 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeccCCCCceecCC-CchHHHHHHHHHHHHHH
Confidence 778899999999999998 3344556666667776665 45654321 000000 12368999999998877
Q ss_pred Hc
Q 031593 136 IG 137 (157)
Q Consensus 136 ~~ 137 (157)
++
T Consensus 167 ~~ 168 (175)
T PF04224_consen 167 LS 168 (175)
T ss_pred HH
Confidence 64
No 14
>PF15111 TMEM101: TMEM101 protein family
Probab=94.94 E-value=0.14 Score=42.42 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhc----cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 031593 65 LVAAAIALKGIGGLLFIFGS--SFGAYLLLLHQALATPILY----DFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGM 138 (157)
Q Consensus 65 ~~~~~~~~el~gGlll~~G~--r~~A~~La~f~v~tt~~~H----~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~ 138 (157)
.+..-+++-++||..+-+|. |+.|++.|+-+...|.+.+ --| .++ .....+.++++++||.+.++++
T Consensus 49 ~vY~~~gv~vlc~T~MSf~~krR~fai~tA~QL~Isty~~~~~~~~~Y----~~W---LkvR~~sR~laiIGgyL~lasG 121 (251)
T PF15111_consen 49 YVYVDMGVAVLCATFMSFGVKRRWFAIVTAVQLAISTYLSCFGQQVHY----SEW---LKVRMYSRSLAIIGGYLRLASG 121 (251)
T ss_pred EeehhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccch----hhH---HHHHHHHHHHHHHHhHhhcccc
Confidence 45778888999999999998 8888888887777666654 122 123 2246699999999999998854
No 15
>PF13781 DoxX_3: DoxX-like family
Probab=90.34 E-value=5.1 Score=28.68 Aligned_cols=67 Identities=21% Similarity=0.157 Sum_probs=49.1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHH
Q 031593 53 TGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS------SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSL 126 (157)
Q Consensus 53 ~G~p~p~~~~~~~~~~~~~~el~gGlll~~G~------r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNl 126 (157)
.|++.+. ...+++.++++|++=|++++..+ .....++..+++..++..=++|-. -.+-..||+
T Consensus 27 ~G~~~~~--a~~~~~~~g~~di~lGl~~l~~~~~r~~~~l~i~~~l~y~~~~~~~~P~lw~~---------Pf~Pl~knl 95 (102)
T PF13781_consen 27 VGLPGAL--APLLLYAGGLLDIALGLLLLSRRRRRWLLLLQIALLLGYTLAIAILLPELWLH---------PFNPLVKNL 95 (102)
T ss_pred hCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHh---------hhhhHHHHH
Confidence 6876542 23478888999999999999866 344456777888888877778842 156689999
Q ss_pred HHHH
Q 031593 127 ALLG 130 (157)
Q Consensus 127 al~G 130 (157)
.++.
T Consensus 96 p~l~ 99 (102)
T PF13781_consen 96 PMLA 99 (102)
T ss_pred HHHH
Confidence 8875
No 16
>COG3059 Predicted membrane protein [Function unknown]
Probab=87.24 E-value=8.7 Score=30.36 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHH------hHHhhcCCCCCch-------hHHHHHHHHHHH
Q 031593 6 FVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSK------HVLSHTGVQVPDV-------EIKYLVAAAIAL 72 (157)
Q Consensus 6 ~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~G~p~p~~-------~~~~~~~~~~~~ 72 (157)
.+.|+-...+|+.-|.-|+..++.++-...=.+.|.++-+-+ |+. +.|-.-|+- ........-+++
T Consensus 18 ~lirlsI~ivfiWiG~lKf~pyEAd~I~PfVaNSP~mSf~Yeh~~~~q~m~-~e~~~~pe~~~w~~~n~tY~~S~~lGi~ 96 (182)
T COG3059 18 TLIRLSIFIVFIWIGGLKFVPYEADGIAPFVANSPLMSFMYEHPEDEQYMT-HEGEYNPENREWHSENNTYAVSNLLGIT 96 (182)
T ss_pred eehHHHHHHHHHHHhcceeeechhhhccHHhhCCcHHHHHHhCcchhhhhh-hhhccChhhHHHhhccchhhHHHHhhHH
Confidence 467999999999999999999985332222233444433322 111 123333421 123355567899
Q ss_pred HHHHHHHHHHhh--HH---HHHHHHHHHHHHHHHhc----cCCC--------CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031593 73 KGIGGLLFIFGS--SF---GAYLLLLHQALATPILY----DFYN--------YDADKKEFGQIFIKFTQSLALLGALLFF 135 (157)
Q Consensus 73 el~gGlll~~G~--r~---~A~~La~f~v~tt~~~H----~FW~--------~~~~~~~~~~~~~~FlkNlal~GGll~~ 135 (157)
|++-|++++.|. +. ...+|+.-+-.+|+.|- +-|- .++.. .--+|++.+++|.+++
T Consensus 97 e~ivgilvL~g~~~~~~Gl~GGll~~~~~ivTLSFLiTTPe~wv~~~~gfp~lsgag-------rlvlKDilmlAgal~v 169 (182)
T COG3059 97 EVIVGILVLIGLRNPKAGLLGGLLVFGTPIVTLSFLITTPEAWVNSLYGFPYLSGAG-------RLVLKDILMLAGALMV 169 (182)
T ss_pred HHHHHHHHHhccccchHHHhhhhHHHHHHHHHHHhhhcChhhccccccCceeEcccc-------hhhHHHHHHHHHHHHH
Confidence 999999999998 33 23334444444444421 2222 12211 2258999999998888
Q ss_pred Hcc
Q 031593 136 IGM 138 (157)
Q Consensus 136 ~~~ 138 (157)
++-
T Consensus 170 ~~~ 172 (182)
T COG3059 170 AAD 172 (182)
T ss_pred HHh
Confidence 764
No 17
>smart00752 HTTM Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.
Probab=85.33 E-value=15 Score=30.43 Aligned_cols=128 Identities=20% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hccc---cCCCccccccchhHHHhHHhHHhhcCCCCCc---hhHHHHHHHHHHHHHHH
Q 031593 5 SFVGRVLFASIFLLSAWQEF--NEFG---VDGGPAAKSLEPKFHIFSKHVLSHTGVQVPD---VEIKYLVAAAIALKGIG 76 (157)
Q Consensus 5 ~~igRvlla~~Fi~sG~~kl--~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~---~~~~~~~~~~~~~el~g 76 (157)
.-+.|++++.+-+.+-+... .+.+ ++++....+..|..+ .--|.|- .+........-++.++.
T Consensus 9 La~fRi~~g~~~l~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~---------~~~~~s~~~~~~s~~~~~~l~~~~~v~ 79 (271)
T smart00752 9 LAVFRILFGLLMLLDILRERGLSDLDLRYGDPLFFCRLPFPLFD---------IMSPLPFHMLSDSLDWMYLLYALMIVG 79 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCccceeeCCCCCCCCccccccc---------ccccchHhhccCchhHHHHHHHHHHHH
Confidence 45789999999988888774 2222 122211110011111 0011120 00011455556888899
Q ss_pred HHHHHHhh--HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhhhccCC
Q 031593 77 GLLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKRKVP 152 (157)
Q Consensus 77 Glll~~G~--r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~~~sl~~r~~~~~~~ 152 (157)
++++++|+ |+++.+..+ ..+...+..+...++. .|..-.+.+ ..++.=.+...|+|.+.++|++.
T Consensus 80 ~l~~~lG~~tR~~~~l~~l---~~~sl~~r~~~~~~gg-------d~~~~~~l~-~l~f~p~~~~~SvDa~~~~~~~~ 146 (271)
T smart00752 80 ALLLLLGYRTRLSSVLFWL---LVWSIQLRDKTVWNGG-------DHSYLVGLF-LLLFLPAGRYWSIDALRNRRRRD 146 (271)
T ss_pred HHHHHhhHHHHHHHHHHHH---HHHHHHhcchhhhcCc-------cHHHHHHHH-HHHHhcCCCeEeeeccccccccc
Confidence 99999999 887665433 3344444444322211 112222222 11121225589999987665543
No 18
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=76.77 E-value=17 Score=32.72 Aligned_cols=118 Identities=26% Similarity=0.389 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCC----CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 031593 7 VGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGV----QVPDVEIKYLVAAAIALKGIGGLLFIF 82 (157)
Q Consensus 7 igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~----p~p~~~~~~~~~~~~~~el~gGlll~~ 82 (157)
+-|++++++.+.+.++-... . -.-..-..|... + +..|. |+|.. .....-++.+++++++++
T Consensus 2 ~fRi~FG~lm~~~~~~~~~~-g---~i~~~~~~p~~~-f-----~f~~f~~l~~l~~~----~~~~lf~v~~l~al~i~l 67 (446)
T PF05090_consen 2 VFRILFGLLMLLDIFRFRAY-G---WIDSRYIDPKFH-F-----RFPGFEWLQPLPGP----WMYLLFLVMGLAALAIAL 67 (446)
T ss_pred eehHHHHHHHHHHHHHHHhc-C---cccceecCCcce-e-----EeecchhcCCCCHh----HHHHHHHHHHHHHHHhee
Confidence 35999999998887765431 1 011111223210 0 00121 23321 344445667789999999
Q ss_pred hh--HHHHHHHHHHHHHHHHHhc-cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCcchhhhhccCC
Q 031593 83 GS--SFGAYLLLLHQALATPILY-DFYNYDADKKEFGQIFIKFTQSLALLGALLFFI--GMKNSMPRRQLKRKVP 152 (157)
Q Consensus 83 G~--r~~A~~La~f~v~tt~~~H-~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~--~~~~sl~~r~~~~~~~ 152 (157)
|+ |+++.+.+ +.- +.+.. |-..+.+. ..+ +.++.-++++. +...|+|.+.+++.+.
T Consensus 68 G~~~R~s~i~f~--l~~-~yi~l~d~~~~~nh--------~yL---~~ll~fll~f~pa~~~~SlDa~~~~~~~~ 128 (446)
T PF05090_consen 68 GYRYRLSIILFF--LLF-TYIFLLDKTSYNNH--------YYL---LRLLLFLLIFLPAGRYWSLDAWRRPRIRN 128 (446)
T ss_pred hHHHHHHHHHHH--HHH-HHHHHhCccccccH--------HHH---HHHHHHHHHHccCCCcccchhhhcccccC
Confidence 99 88754432 222 33322 22111110 011 24444444444 4478999988665443
No 19
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=37.45 E-value=3.2e+02 Score=24.83 Aligned_cols=112 Identities=24% Similarity=0.265 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHH-HHHHhh-
Q 031593 7 VGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGL-LFIFGS- 84 (157)
Q Consensus 7 igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGl-ll~~G~- 84 (157)
+-|.|++..|...|++.+..+.+ .|..+..|+.--+ +....++.++++-+ +++.|+
T Consensus 254 i~~FLiA~~~~~DGv~til~~~~-----------------~fg~~~~gls~~~-----lll~g~~~~vvA~lg~ii~g~L 311 (438)
T COG2270 254 LVLFLIARFFYIDGVNTILAMGG-----------------VFGAADLGLSSTE-----LLLIGIALSVVAALGAIIAGFL 311 (438)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHcCccHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999987652 1223235654333 34455566666555 333455
Q ss_pred --HHHHH-----HHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCcchhhhhccCCCCC
Q 031593 85 --SFGAY-----LLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI--GMKNSMPRRQLKRKVPKTK 155 (157)
Q Consensus 85 --r~~A~-----~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~--~~~~sl~~r~~~~~~~~~~ 155 (157)
|++.- .+++..+.+-+.+-.. . +---++.|+++-. |.-.+.+|...-|..||.|
T Consensus 312 d~rfg~k~vl~~~lvi~~~~~~~~~~~~---~--------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k 374 (438)
T COG2270 312 DERFGSKPVLMIGLVILSIAALYLIFLE---G--------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK 374 (438)
T ss_pred HHHhCCceeehHHHHHHHHHHHHHHHcc---c--------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence 44321 1122222222211100 0 1112334444433 5567777888889999988
Q ss_pred CC
Q 031593 156 TG 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 375 ~~ 376 (438)
T COG2270 375 EG 376 (438)
T ss_pred cc
Confidence 65
No 20
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=37.42 E-value=1.8e+02 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHH
Q 031593 86 FGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLA 127 (157)
Q Consensus 86 ~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNla 127 (157)
++-+++...++....-..+|...+....+ ..++.+|+|++|
T Consensus 49 L~II~~L~ll~l~giq~~~y~~~~~~~~q-~~~~~~fi~~vA 89 (149)
T PF11694_consen 49 LSIIALLLLLLLIGIQYSDYQQNQNQHSQ-SSQMVHFIESVA 89 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHH
Confidence 44444555455555566688776554444 456999999876
No 21
>PRK02237 hypothetical protein; Provisional
Probab=36.33 E-value=1.5e+02 Score=21.80 Aligned_cols=40 Identities=28% Similarity=-0.026 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHhccCC
Q 031593 65 LVAAAIALKGIGGLLFIFGS---------SFGAYLLLLHQALATPILYDFY 106 (157)
Q Consensus 65 ~~~~~~~~el~gGlll~~G~---------r~~A~~La~f~v~tt~~~H~FW 106 (157)
+...+...|++|+-++-... -+++..|++|-...| .|++.
T Consensus 8 lF~laalaEI~Gcyl~w~wlR~~ks~~~~~pg~~~L~lfg~llT--l~p~~ 56 (109)
T PRK02237 8 LFVLAALAEIGGCYLPWLWLREGKSAWWLLPGALSLALFGWLLT--LQPDA 56 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHh--cCCch
Confidence 45677899999999887643 567888888877777 78764
No 22
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=34.74 E-value=2.9e+02 Score=24.75 Aligned_cols=122 Identities=19% Similarity=0.188 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCccccccchhHHHhHHhHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH-Hhh
Q 031593 6 FVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI-FGS 84 (157)
Q Consensus 6 ~igRvlla~~Fi~sG~~kl~~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~p~~~~~~~~~~~~~~el~gGlll~-~G~ 84 (157)
-+.|.|++..|..+|++.+..+.. -|..+..|....+ +....+.+++.+.+.-. .|+
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~-----------------i~a~~~lg~s~~~-----l~~~~l~~~i~a~~Ga~~~g~ 339 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAG-----------------IYATEVLGMSTTQ-----LIVFGLVVQIVAIIGALLFGW 339 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhcCcCHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999986652 1334346655443 45566667776666333 344
Q ss_pred ---HHHHH-------HHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhhhccCCCC
Q 031593 85 ---SFGAY-------LLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKRKVPKT 154 (157)
Q Consensus 85 ---r~~A~-------~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~~~sl~~r~~~~~~~~~ 154 (157)
|++.- .+.+..+......-.+|....+-+ +..+|+-- +++-|+. .|.-++.+|-.-.|.-|+.
T Consensus 340 l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~----~~~~f~~~-a~~~G~~--~G~~qs~sRs~~~~LiP~g 412 (477)
T PF11700_consen 340 LQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK----SPWEFWVL-AVLIGLF--MGGIQSASRSLFSRLIPPG 412 (477)
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc----cHHHHHHH-HHHHHHH--hhhHHHHHHHHHHHhCCCc
Confidence 44333 233333333344444443221111 12334433 2222322 3555666666667777776
Q ss_pred CC
Q 031593 155 KT 156 (157)
Q Consensus 155 ~~ 156 (157)
|.
T Consensus 413 ~e 414 (477)
T PF11700_consen 413 RE 414 (477)
T ss_pred hh
Confidence 64
No 23
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.52 E-value=92 Score=27.54 Aligned_cols=25 Identities=12% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHh--ccCCCCCh
Q 031593 86 FGAYLLLLHQALATPIL--YDFYNYDA 110 (157)
Q Consensus 86 ~~A~~La~f~v~tt~~~--H~FW~~~~ 110 (157)
++-.=+++|.+.-.+.. |.||-.++
T Consensus 235 LaIvRlILF~I~~il~~g~~g~W~FPN 261 (372)
T KOG2927|consen 235 LAIVRLILFGITWILTGGKHGFWLFPN 261 (372)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEeccc
Confidence 33344677888888888 99998876
No 24
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=29.28 E-value=1e+02 Score=28.16 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCCC
Q 031593 66 VAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNY 108 (157)
Q Consensus 66 ~~~~~~~el~gGlll~~G~r~~A~~La~f~v~tt~~~H~FW~~ 108 (157)
+..+..-+++|+++++.|. +++ -+|.|+++|+|=.+
T Consensus 398 ~P~T~~Gklvas~cil~GV----Lvl---AlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 398 VPVTVLGKLVASLCILCGV----LVL---ALPITIIVNNFSMY 433 (477)
T ss_pred cccccchHHHHHHHHHHhH----HHh---hcchHhHhhhHHHH
Confidence 3445567899999999887 222 35899999998654
No 25
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=29.09 E-value=2e+02 Score=23.99 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 031593 68 AAIALKGIGGLLFIFGS 84 (157)
Q Consensus 68 ~~~~~el~gGlll~~G~ 84 (157)
.+.+++++|++.+++-+
T Consensus 120 its~vsivga~vmLl~~ 136 (237)
T PF13748_consen 120 ITSVVSIVGAAVMLLVF 136 (237)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999999888766
No 26
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=24.57 E-value=2.8e+02 Score=24.96 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh------H-HHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 031593 65 LVAAAIALKGIGGLLFIFGS------S-FGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFI- 136 (157)
Q Consensus 65 ~~~~~~~~el~gGlll~~G~------r-~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~- 136 (157)
+...-..+.+.|.++--+|. . +|...+..+.+++.+.+++...++- .....+|+|+- +++-++
T Consensus 30 m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~-----~~~v~~fm~~~----~Fl~ffI 100 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESV-----VEAVTNFMKGS----NFLYFFI 100 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHH-----HHHHHHHhccC----ChHHHHH
Confidence 44444455666666666776 3 7888888889999999988885321 23366677762 333222
Q ss_pred -----cccCCcchhhhhc
Q 031593 137 -----GMKNSMPRRQLKR 149 (157)
Q Consensus 137 -----~~~~sl~~r~~~~ 149 (157)
+-=.++|||...|
T Consensus 101 a~LI~GSILgm~RklLik 118 (414)
T PF03390_consen 101 AALIVGSILGMNRKLLIK 118 (414)
T ss_pred HHHHHhhhhhcCHHHHHH
Confidence 2345788877654
No 27
>COG5373 Predicted membrane protein [Function unknown]
Probab=22.47 E-value=3.5e+02 Score=26.79 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHH--HHHHHHcccCCcchhhhhccCCCCC
Q 031593 85 SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLG--ALLFFIGMKNSMPRRQLKRKVPKTK 155 (157)
Q Consensus 85 r~~A~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~G--Gll~~~~~~~sl~~r~~~~~~~~~~ 155 (157)
|.++..|..-+++=-+ +||+++ ...+.+.+|.+| .+|+.+|.-+.+..|..+.+.||..
T Consensus 870 r~asa~lv~v~VvKlF----l~dms~--------leg~~R~vSFiGlG~~Li~IG~fyql~~~~~~~~~~~~q 930 (931)
T COG5373 870 RIASAALVGVTVVKLF----LFDMSN--------LEGVLRAVSFIGLGAVLIGIGYFYQLLPRAAVEEQPADQ 930 (931)
T ss_pred HHHhHHHHHHHHHHHH----Hhhccc--------chhHHHHHHHHhhhHHHHHHhhhhccCcchhhhcccccC
Confidence 6666666554544433 466554 445666777776 5555567777799899888888754
No 28
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=21.00 E-value=1.1e+02 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Q 031593 89 YLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQSLALLGALLFFIGMKN 140 (157)
Q Consensus 89 ~~La~f~v~tt~~~H~FW~~~~~~~~~~~~~~~FlkNlal~GGll~~~~~~~ 140 (157)
+++.+-|..+|+..| +.+.+.+ +. +.+--|=++.+||..+++|...
T Consensus 226 ~l~f~aT~va~~yh~-~l~~~aP---yp--l~s~pklLG~~GGi~Ll~G~~~ 271 (372)
T TIGR02484 226 GLTFLSTVAAFVYHH-LLGQPAP---YP--LLSLPVILGLVGGVAMLAGAAG 271 (372)
T ss_pred HHHHHHHHHHHHHHH-HccCCCC---CC--cccHHHHHHHHHHHHHHHHHHH
Confidence 445555666666555 4443332 12 4667888999999999987644
No 29
>PRK10209 acid-resistance membrane protein; Provisional
Probab=20.04 E-value=4.3e+02 Score=20.57 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 031593 9 RVLFASIFLLSAWQEFNEFG 28 (157)
Q Consensus 9 Rvlla~~Fi~sG~~kl~~~~ 28 (157)
+.+.+.+++.-|+--+.++.
T Consensus 82 ~ll~Gil~ii~Gil~l~~P~ 101 (190)
T PRK10209 82 GILLGVAYLVLGYFFIRNPE 101 (190)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44556666666666555544
Done!