Query 031593
Match_columns 157
No_of_seqs 114 out of 575
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ymm_C MBP peptide, HLA class 44.8 6.2 0.00021 20.9 0.5 8 119-126 4-11 (26)
2 2dw3_A Intrinsic membrane prot 28.6 1.1E+02 0.0037 20.2 4.7 54 101-154 5-66 (77)
3 2nrg_A Intrinsic membrane prot 22.9 1.4E+02 0.0049 19.8 4.5 54 101-154 6-67 (82)
4 2lug_A Myelin basic protein; i 21.2 43 0.0015 18.7 1.4 8 119-126 12-19 (36)
5 4g9j_C Synthetic peptide, seri 17.0 36 0.0012 17.5 0.4 7 149-155 2-8 (26)
6 1jb0_X Photosystem I subunit P 12.0 2.2E+02 0.0074 15.8 2.7 18 86-103 15-32 (35)
7 1hgv_A PH75 inovirus major coa 8.7 93 0.0032 18.1 0.4 34 116-149 9-42 (46)
8 2k1a_A Integrin alpha-IIB; sin 8.3 2E+02 0.0067 16.6 1.8 12 125-136 14-25 (42)
9 2l8s_A Integrin alpha-1; trans 7.8 2.1E+02 0.0071 17.5 1.8 11 126-136 14-24 (54)
10 2knc_A Integrin alpha-IIB; tra 7.8 2.1E+02 0.0071 17.5 1.8 12 125-136 16-27 (54)
No 1
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=44.80 E-value=6.2 Score=20.86 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=6.9
Q ss_pred HHHHHHHH
Q 031593 119 FIKFTQSL 126 (157)
Q Consensus 119 ~~~FlkNl 126 (157)
+.||+||+
T Consensus 4 vVHFFKNi 11 (26)
T 1ymm_C 4 VVHFFKNI 11 (26)
T ss_pred hhhhhhhc
Confidence 68999996
No 2
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=28.57 E-value=1.1e+02 Score=20.18 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred HhccCCCCChhHHHHHHHHH-----HHHHHHHHHHHHHHHH---cccCCcchhhhhccCCCC
Q 031593 101 ILYDFYNYDADKKEFGQIFI-----KFTQSLALLGALLFFI---GMKNSMPRRQLKRKVPKT 154 (157)
Q Consensus 101 ~~H~FW~~~~~~~~~~~~~~-----~FlkNlal~GGll~~~---~~~~sl~~r~~~~~~~~~ 154 (157)
++||+-+.....+-...... .|+-.+..+|.++++. ....-+|.|.++..+|-+
T Consensus 5 ~~~dyL~~~~k~rLr~~i~~qMlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~P~~ 66 (77)
T 2dw3_A 5 IFNDHLNTNPKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNI 66 (77)
T ss_dssp TTCCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSSCCS
T ss_pred HHHHHhccCcchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCCcc
Confidence 57888874432221111122 3344444444444443 337788888888888865
No 3
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=22.95 E-value=1.4e+02 Score=19.82 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=29.3
Q ss_pred HhccCCCCChhHHHHHHHH-----HHHHHHHHHHHHHHHHH---cccCCcchhhhhccCCCC
Q 031593 101 ILYDFYNYDADKKEFGQIF-----IKFTQSLALLGALLFFI---GMKNSMPRRQLKRKVPKT 154 (157)
Q Consensus 101 ~~H~FW~~~~~~~~~~~~~-----~~FlkNlal~GGll~~~---~~~~sl~~r~~~~~~~~~ 154 (157)
+|||+.+.....+-..... -.|+-.+..+|.++++. ....-+|.|.++..+|-+
T Consensus 6 ~f~dyL~~~~k~rLr~wi~~qMlKGAG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP~P~~ 67 (82)
T 2nrg_A 6 IFNDHLNTNPKTNLRLWVAFQMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPAPNI 67 (82)
T ss_dssp GGGSSSCCCHHHHHHHHHHHHHTHHHHTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCSSSSS
T ss_pred HhhhhcccCcchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcccCCCCcc
Confidence 5788887433222111111 22334444444444433 337788888888888876
No 4
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=21.22 E-value=43 Score=18.73 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=7.1
Q ss_pred HHHHHHHH
Q 031593 119 FIKFTQSL 126 (157)
Q Consensus 119 ~~~FlkNl 126 (157)
..||+||+
T Consensus 12 vvhffkni 19 (36)
T 2lug_A 12 VVHFFKNI 19 (36)
T ss_dssp HHHHHHHH
T ss_pred hhHhhhhc
Confidence 68999996
No 5
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=16.96 E-value=36 Score=17.54 Aligned_cols=7 Identities=71% Similarity=0.937 Sum_probs=4.1
Q ss_pred ccCCCCC
Q 031593 149 RKVPKTK 155 (157)
Q Consensus 149 ~~~~~~~ 155 (157)
|++||.|
T Consensus 2 rkrpkrk 8 (26)
T 4g9j_C 2 RKRPKRK 8 (26)
T ss_pred Ccccccc
Confidence 5566655
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=11.96 E-value=2.2e+02 Score=15.84 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 031593 86 FGAYLLLLHQALATPILY 103 (157)
Q Consensus 86 ~~A~~La~f~v~tt~~~H 103 (157)
++-++|++-.+++.+.+|
T Consensus 15 WalllLaINflVAayYFh 32 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYFA 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455777777777888777
No 7
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=8.68 E-value=93 Score=18.10 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCcchhhhhc
Q 031593 116 GQIFIKFTQSLALLGALLFFIGMKNSMPRRQLKR 149 (157)
Q Consensus 116 ~~~~~~FlkNlal~GGll~~~~~~~sl~~r~~~~ 149 (157)
..+..+....++-.|-..+......|-.||-.+|
T Consensus 9 a~~v~~yi~~iaaagvgvlal~iglsaaw~ya~r 42 (46)
T 1hgv_A 9 ASQVTNYIQAIAAAGVGVLALAIGLSAAWKYAKR 42 (46)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHhHHHHHHHHHH
Confidence 3457778888888886666666666666666554
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.35 E-value=2e+02 Score=16.59 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q 031593 125 SLALLGALLFFI 136 (157)
Q Consensus 125 Nlal~GGll~~~ 136 (157)
-+|++||+++++
T Consensus 14 i~s~l~GLllL~ 25 (42)
T 2k1a_A 14 LVGVLGGLLLLT 25 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468888988776
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.78 E-value=2.1e+02 Score=17.50 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 031593 126 LALLGALLFFI 136 (157)
Q Consensus 126 lal~GGll~~~ 136 (157)
+|++||+++++
T Consensus 14 ~svl~GLLLL~ 24 (54)
T 2l8s_A 14 LSAFAGLLLLM 24 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68889988876
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.78 E-value=2.1e+02 Score=17.45 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 031593 125 SLALLGALLFFI 136 (157)
Q Consensus 125 Nlal~GGll~~~ 136 (157)
-+|++||+++++
T Consensus 16 i~svl~GLllL~ 27 (54)
T 2knc_A 16 LVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899988877
Done!