BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031595
         (157 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q03SU6|SYC_LACBA Cysteine--tRNA ligase OS=Lactobacillus brevis (strain ATCC 367 /
           JCM 1170) GN=cysS PE=3 SV=1
          Length = 470

 Score = 37.0 bits (84), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 22/128 (17%)

Query: 24  LRKILSTCNHSK--AFNKQTTHCRQKKLSRRKPILLSTSIDR-GYLTRTAAGGVPPPPLD 80
           LR  +ST  + +   + +Q     ++ L R     L T+ D  GY  + A  G  P    
Sbjct: 294 LRFFMSTTQYRRPIQYTQQNLDTAERNLER-----LQTAYDNMGYRLKDAEAGNDPK--- 345

Query: 81  LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARL 140
             E   RQ++AD    +   F+   GI  V ELA L          G  + +R  V A  
Sbjct: 346 -VEQETRQIVADYIDAMDDDFNVQNGIAKVHELARL----------GNVYAERPVVFAGT 394

Query: 141 ANYLKQRI 148
            ++++Q +
Sbjct: 395 LDFIRQTL 402


>sp|Q93W20|NIFU2_ARATH NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2
           PE=1 SV=1
          Length = 235

 Score = 33.1 bits (74), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+N+ +V+ + R  L    D S+      +L E++ P VKIR+ G      +  +A
Sbjct: 164 LELNEENIEKVLEEIRPYLIGTADGSL------DLVEIEDPIVKIRITGPAAGVMTVRVA 217

Query: 139 RLANYLKQRIP 149
            +   L+++IP
Sbjct: 218 -VTQKLREKIP 227


>sp|Q84LK7|NIFU1_ORYSJ NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica
           GN=NIFU1 PE=1 SV=1
          Length = 226

 Score = 31.6 bits (70), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L E+NV +V+ + R  LA       G  G+ +   + GP VK+RL G     R+  IA
Sbjct: 154 LELNEENVEKVLNEIRPYLA-----GTGGGGL-QFLMIKGPIVKVRLTGPAAVVRTVRIA 207

Query: 139 RLANYLKQRIP 149
            ++  L+++IP
Sbjct: 208 -VSKKLREKIP 217


>sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3
           PE=2 SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 79  LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIA 138
           L+L ++N+ +V+++ R  L+       G  G+ EL E+DG  VK+RL G      +  +A
Sbjct: 164 LELNDENIEKVLSELRPYLS-----GTGGGGL-ELVEIDGYVVKVRLTGPAAGVMTVRVA 217

Query: 139 RLANYLKQRIP 149
            L   L++ IP
Sbjct: 218 -LTQKLRETIP 227


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,731,800
Number of Sequences: 539616
Number of extensions: 1986165
Number of successful extensions: 6702
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6699
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)