Query 031595
Match_columns 157
No_of_seqs 96 out of 98
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 03:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th5_A NIFU1; iron-sulfur clus 99.9 2.7E-24 9.2E-29 150.9 4.2 66 79-152 2-68 (74)
2 1xhj_A Nitrogen fixation prote 99.9 8.8E-23 3E-27 147.3 8.7 64 82-152 8-74 (88)
3 2z51_A NIFU-like protein 2, ch 99.9 4.3E-22 1.5E-26 154.9 8.1 70 76-152 80-149 (154)
4 2z51_A NIFU-like protein 2, ch 99.8 1.9E-21 6.5E-26 151.2 8.0 67 79-152 2-71 (154)
5 1veh_A NIFU-like protein hirip 99.8 6.4E-21 2.2E-25 138.4 6.5 66 80-152 12-81 (92)
6 3cq1_A Putative uncharacterize 97.0 0.00061 2.1E-08 47.8 3.9 67 81-152 6-75 (103)
7 1uwd_A Hypothetical protein TM 96.3 0.0029 1E-07 44.2 3.6 67 81-152 6-76 (103)
8 3lno_A Putative uncharacterize 95.8 0.0041 1.4E-07 44.2 2.3 68 81-152 8-79 (108)
9 2gdt_A Leader protein; P65 hom 57.0 13 0.00044 28.4 4.2 31 85-124 23-61 (116)
10 2pt7_G HP1451, hypothetical pr 54.0 19 0.00063 27.6 4.7 40 89-131 3-45 (152)
11 3prb_A FKBP-type peptidyl-prol 48.2 37 0.0013 27.3 5.8 58 85-151 152-211 (231)
12 1t6s_A Conserved hypothetical 46.9 25 0.00086 27.0 4.5 43 81-131 36-78 (162)
13 3hgj_A Chromate reductase; TIM 44.7 68 0.0023 26.2 7.0 113 23-149 82-217 (349)
14 1t82_A Hypothetical acetyltran 43.2 22 0.00077 25.6 3.5 39 79-126 11-49 (155)
15 1ryp_J 20S proteasome; multica 41.5 61 0.0021 23.9 5.7 44 86-129 159-203 (204)
16 3kru_A NADH:flavin oxidoreduct 41.0 50 0.0017 27.4 5.7 112 23-149 82-208 (343)
17 1iru_J 20S proteasome; cell cy 38.5 60 0.0021 24.0 5.3 43 86-128 160-203 (205)
18 2wte_A CSA3; antiviral protein 37.7 31 0.0011 27.4 3.8 28 83-117 46-74 (244)
19 3af5_A Putative uncharacterize 37.0 31 0.0011 30.6 4.1 60 85-148 10-70 (651)
20 3gr7_A NADPH dehydrogenase; fl 35.9 58 0.002 26.7 5.3 110 23-148 84-208 (340)
21 1iru_M 20S proteasome; cell cy 33.9 66 0.0022 23.9 4.9 43 87-129 169-212 (213)
22 3t3l_A Frataxin, mitochondrial 33.2 87 0.003 23.3 5.4 48 77-126 5-56 (129)
23 2qwz_A Phenylacetic acid degra 32.9 64 0.0022 23.0 4.6 39 78-126 21-59 (159)
24 2z99_A Putative uncharacterize 32.2 52 0.0018 26.6 4.3 44 80-131 41-84 (219)
25 1sh8_A Hypothetical protein PA 30.7 61 0.0021 22.4 4.0 39 79-126 3-41 (154)
26 3hdu_A Putative thioesterase; 30.7 64 0.0022 22.8 4.2 18 111-128 32-49 (157)
27 3ub1_A ORF13-like protein; NTF 30.6 44 0.0015 27.4 3.7 34 89-122 153-204 (261)
28 4b89_A General negative regula 29.0 27 0.00093 29.1 2.2 19 22-40 172-190 (249)
29 3f5o_A Thioesterase superfamil 28.9 59 0.002 22.4 3.7 19 108-126 25-43 (148)
30 3cgi_A Propanediol utilization 28.1 64 0.0022 24.0 3.9 31 108-142 67-97 (124)
31 4aaj_A N-(5'-phosphoribosyl)an 27.4 9.7 0.00033 30.4 -0.7 17 81-97 182-198 (228)
32 3gka_A N-ethylmaleimide reduct 27.2 1.7E+02 0.0059 24.5 6.9 121 23-150 88-227 (361)
33 3e70_C DPA, signal recognition 26.9 45 0.0015 27.3 3.1 24 78-102 44-67 (328)
34 4ab4_A Xenobiotic reductase B; 26.8 2.1E+02 0.007 24.0 7.3 121 23-150 80-219 (362)
35 3cim_A Carbon dioxide-concentr 26.5 1.5E+02 0.0052 21.0 5.5 31 108-142 26-59 (99)
36 1th8_B Anti-sigma F factor ant 25.9 60 0.0021 20.9 3.1 38 116-153 9-48 (116)
37 2ycb_A Beta-CAsp RNAse, cleava 25.5 62 0.0021 28.6 3.9 41 108-148 20-61 (636)
38 3r07_C Putative lipoate-protei 25.1 1.3E+02 0.0044 20.6 4.8 38 108-145 16-55 (91)
39 3l5l_A Xenobiotic reductase A; 25.1 1.1E+02 0.0039 25.1 5.3 67 76-149 143-223 (363)
40 3quw_A Protein MMF1; chorismat 24.9 2E+02 0.0067 21.4 6.2 56 83-156 74-129 (153)
41 3hn9_A Lamin-B1; structural ge 24.8 53 0.0018 24.0 2.9 21 108-128 12-34 (123)
42 1ryp_M 20S proteasome; multica 24.7 1.3E+02 0.0046 22.6 5.3 42 87-128 178-220 (222)
43 2fhm_A Probable acylphosphatas 23.6 64 0.0022 21.8 3.0 49 93-149 17-65 (91)
44 1gxu_A Hydrogenase maturation 23.5 1.2E+02 0.0041 20.7 4.4 45 93-149 22-66 (91)
45 1ulr_A Putative acylphosphatas 23.4 59 0.002 22.0 2.8 33 93-128 17-49 (88)
46 3kjj_A NMB1025 protein; YJGF p 22.9 1.5E+02 0.0051 21.2 5.0 59 82-157 43-101 (128)
47 1p5d_X PMM, phosphomannomutase 22.8 1.4E+02 0.0048 25.2 5.5 42 113-154 419-462 (463)
48 1ifr_A Lamin A/C; immunoglobul 22.7 61 0.0021 23.7 2.9 21 108-128 6-28 (121)
49 1pf5_A Hypothetical protein YJ 22.6 1.7E+02 0.0056 20.5 5.1 59 82-157 49-108 (131)
50 4gmj_A CCR4-NOT transcription 22.2 40 0.0014 27.6 2.0 18 22-39 149-166 (229)
51 3dex_A SAV_2001; alpha-beta pr 21.6 69 0.0024 23.5 3.0 35 106-142 52-86 (107)
52 2a10_A CCMK4, carbon dioxide c 21.6 1.8E+02 0.0061 21.7 5.3 31 108-142 28-61 (125)
53 4ehu_A Activator of 2-hydroxyi 21.5 82 0.0028 23.8 3.5 43 108-150 104-146 (276)
54 2xxa_A Signal recognition part 21.4 62 0.0021 27.5 3.1 22 80-102 21-42 (433)
55 2lll_A Lamin-B2; immunoglobuli 21.4 66 0.0023 24.2 2.9 20 108-127 21-42 (139)
56 1z41_A YQJM, probable NADH-dep 21.4 1.4E+02 0.0047 24.1 5.0 63 24-95 85-148 (338)
57 2xr1_A Cleavage and polyadenyl 21.1 68 0.0023 28.4 3.4 39 110-148 26-65 (640)
58 1sbo_A Putative anti-sigma fac 20.7 84 0.0029 19.9 3.0 40 116-155 10-51 (110)
59 4ayb_F DNA-directed RNA polyme 20.6 40 0.0014 24.3 1.5 25 74-98 88-112 (113)
60 2bjd_A Acylphosphatase; hypert 20.6 77 0.0026 22.1 3.0 47 93-147 29-75 (101)
61 2vh7_A Acylphosphatase-1; hydr 20.6 78 0.0027 21.8 3.0 49 93-149 23-71 (99)
62 3jt0_A Lamin-B1; structural ge 20.5 69 0.0024 24.2 2.9 21 108-128 25-47 (144)
63 3gtz_A Putative translation in 20.3 1.8E+02 0.0063 20.4 5.0 59 82-157 37-95 (124)
64 1urr_A CG18505 protein; acylph 20.0 74 0.0025 22.1 2.7 49 93-149 26-74 (102)
No 1
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.89 E-value=2.7e-24 Score=150.94 Aligned_cols=66 Identities=33% Similarity=0.491 Sum_probs=62.9
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccccccc-cceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCc
Q 031595 79 LDLTEDNVRQVIADARGELAQLFDTSVGIT-GVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 79 LeLteENVE~vLdeiRP~L~a~fD~sVGdG-GdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~ 152 (157)
|++++++|+++|++|||+|++ || |||||++||+++|+|||+|+|.++ +|+|++||+.||+++|||.
T Consensus 2 ~~~~~~~V~~~L~~iRP~L~~-------dGGGdvelv~v~~g~V~v~l~GaC~gc-~Tlk~gIe~~L~~~vpei~ 68 (74)
T 1th5_A 2 LELNEENVEKVLNEIRPYLAG-------TGGGGLQFLMIKGPIVKVRLTGPAAVV-RTVRIAVSKKLREKIPSIQ 68 (74)
T ss_dssp CCCSHHHHHHHHTTTHHHHTT-------TTCCCCCCCEEETTEEEECCCSSSSSS-SSHHHHHHHHHHHHCTTCS
T ss_pred hhHHHHHHHHHHHHHhHHHHh-------cCCCcEEEEEEeCCEEEEEEecCCcch-HHHHHHHHHHHHHHCCCCc
Confidence 678999999999999999995 69 999999999999999999999996 9999999999999999985
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.88 E-value=8.8e-23 Score=147.33 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595 82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~ 152 (157)
..++|+++|++|||+|++ |||||||+++|+++|+|||+|+|.+ +.+|||++||+.||+++|||.
T Consensus 8 ~~~~I~~~L~~IRP~L~~-------dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~ 74 (88)
T 1xhj_A 8 MFDQVAEVIERLRPFLLR-------DGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVI 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHhcHHHHh-------cCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCce
Confidence 478999999999999996 6999999999999999999999999 799999999999999999986
No 3
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.86 E-value=4.3e-22 Score=154.90 Aligned_cols=70 Identities=30% Similarity=0.479 Sum_probs=64.9
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCc
Q 031595 76 PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 76 ~~~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~ 152 (157)
.+.+++++|+|+++||+|||||++ + ||||||||+|||++|+|||+|+|++ .||+|++||+.||+++|||+
T Consensus 80 ~e~l~L~~~~v~~~L~~iRP~L~~--~----dGGdvelv~v~~~~v~v~l~Gac~~-~~Tlk~~Ie~~l~e~vP~i~ 149 (154)
T 2z51_A 80 ETGLELNEENIEKVLEEIRPYLIG--T----ADGSLDLVEIEDPIVKIRITGPAAG-VMTVRVAVTQKLREKIPSIA 149 (154)
T ss_dssp CCSCCSSHHHHHHHHHHHGGGCCG--G----GCCEEEEEEEETTEEEEEEESGGGG-CHHHHHHHHHHHHHHCTTCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhh--c----CCCCeEEEEEECCEEEEEEecCCcc-cHhHHHHHHHHHHHHCCCcc
Confidence 456899999999999999999983 2 4999999999999999999999999 69999999999999999986
No 4
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.85 E-value=1.9e-21 Score=151.24 Aligned_cols=67 Identities=30% Similarity=0.422 Sum_probs=63.5
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 79 LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~ 152 (157)
|++++|+|+++|++|||+|++ |||||||+++||++|+|||+|+|.+ +.+|+|++||+.||+++|||.
T Consensus 2 ~~~~~e~v~~~L~~iRP~l~~-------dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~ 71 (154)
T 2z51_A 2 VPLTEENVESVLDEIRPYLMS-------DGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIV 71 (154)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH-------TTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CcchHHHHHHHHHHhChHHHh-------cCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCce
Confidence 578999999999999999996 6999999999999999999999998 689999999999999999984
No 5
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.83 E-value=6.4e-21 Score=138.36 Aligned_cols=66 Identities=17% Similarity=0.237 Sum_probs=61.2
Q ss_pred ccchHHHHHHHHH-HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc---chhhHHHHHHHHHHhhCCcCc
Q 031595 80 DLTEDNVRQVIAD-ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH---KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 80 eLteENVE~vLde-iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPEI~ 152 (157)
+-..+.|+++|++ |||+|++ |||||||+++|+++|+|||+|+|.+ +.+|||++||+.||+++|||.
T Consensus 12 ~~~~~~I~~~L~~~IRP~L~~-------dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~ 81 (92)
T 1veh_A 12 DEVVAMIKELLDTRIRPTVQE-------DGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE 81 (92)
T ss_dssp CHHHHHHHHHHHHTTHHHHHH-------HSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHhhHHHHh-------cCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence 3356789999997 9999996 6999999999999999999999999 799999999999999999985
No 6
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.00 E-value=0.00061 Score=47.83 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHH-HHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595 81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 81 LteENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~ 152 (157)
.++|.|.++|..+ -|+|+. ++-+-|-|.=|+++|+.|+|.|+-.+.+ ...+++..|++.|+ .+|++.
T Consensus 6 ~~~~~V~~aL~~V~DPel~~----~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~ 75 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGL----DVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVE 75 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCS----BTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCC
T ss_pred hHHHHHHHHHhCCCCCCCCc----CchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCce
Confidence 4678888888886 688873 3555699999999988999999999887 47789999999997 566653
No 7
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.35 E-value=0.0029 Score=44.18 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHH-HHHHhhhccccccccceEEEEecC-CeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595 81 LTEDNVRQVIADAR-GELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 81 LteENVE~vLdeiR-P~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~ 152 (157)
++++.|.++|..+. |++.. ++-+-|-|.=|+++| +.|+|.|+-.+.+ ....++..|++.|+ .+|++.
T Consensus 6 ~~~~~V~~aL~~V~DPel~~----~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~ 76 (103)
T 1uwd_A 6 VTKEDVLNALKNVIDFELGL----DVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVN 76 (103)
T ss_dssp CCHHHHHHHHTTCBCTTTSS----BTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCC
T ss_pred chHHHHHHHHcCCCCCCCCc----ChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcc
Confidence 67889999999986 88873 355568898899985 8999999988877 47788999999997 466653
No 8
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=95.82 E-value=0.0041 Score=44.23 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHH-HHHHHhhhccccccccceEEEEecC-CeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcCc
Q 031595 81 LTEDNVRQVIADA-RGELAQLFDTSVGITGVAELAELDG-PFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVSP 152 (157)
Q Consensus 81 LteENVE~vLdei-RP~L~a~fD~sVGdGGdVELVeIDG-pvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI~ 152 (157)
.+++.|.++|..+ -|++. .++.+-|-|.=|+|+| +.|+|.|+=.+-+ ....++..|++.|++.+|++.
T Consensus 8 ~~~~~V~~aL~~V~DPe~~----~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~ 79 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELG----VDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVN 79 (108)
T ss_dssp HHHHHHHHHGGGCEETTTT----EEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCC
T ss_pred hhHHHHHHHHcCCCCCCCC----CCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCc
Confidence 4566666666665 56654 2355579999999985 8999999887766 466889999999977788874
No 9
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=56.97 E-value=13 Score=28.36 Aligned_cols=31 Identities=35% Similarity=0.679 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhccccccccceEEEEe--------cCCeEEEE
Q 031595 85 NVRQVIADARGELAQLFDTSVGITGVAELAEL--------DGPFVKIR 124 (157)
Q Consensus 85 NVE~vLdeiRP~L~a~fD~sVGdGGdVELVeI--------DGpvVkVr 124 (157)
.+|++|+++|..|. .|...||++ .+|.|.|.
T Consensus 23 ~~EeALe~ar~~L~---------~g~~~lV~~~Kg~~p~l~~p~V~v~ 61 (116)
T 2gdt_A 23 SVEEALSEAREHLK---------NGTCGLVELEKGVLPQLEQPYVFIK 61 (116)
T ss_dssp SHHHHHHHHHHHHH---------HTCEEEECCCTTSGGGSCSCEEEEE
T ss_pred CHHHHHHHHHHHhh---------cCCceEEEeccccCcccCCCEEEEE
Confidence 58999999999997 688999983 45666664
No 10
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=53.97 E-value=19 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhccccccccce---EEEEecCCeEEEEEeeccCc
Q 031595 89 VIADARGELAQLFDTSVGITGVA---ELAELDGPFVKIRLRGRFWH 131 (157)
Q Consensus 89 vLdeiRP~L~a~fD~sVGdGGdV---ELVeIDGpvVkVrL~GaC~~ 131 (157)
.+++++.||..+|+ .+|-++ +..+.|+..+.+.|.|.=.+
T Consensus 3 ~~~~~~~~L~~il~---~m~~~~~~i~v~~~~~~~i~i~i~ged~g 45 (152)
T 2pt7_G 3 KLHEIKQELKDLFS---HLPYKINKVEVSLYEPGVLLIDIDGEDSA 45 (152)
T ss_dssp CHHHHHHHHHHHTT---TTTCCEEEEEEEEEETTEEEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHH---HcCCCceEEEEEEecCCEEEEEEecCCcc
Confidence 45778889998887 234444 43345789999999997655
No 11
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=48.17 E-value=37 Score=27.30 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc--chhhHHHHHHHHHHhhCCcC
Q 031595 85 NVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH--KRSTVIARLANYLKQRIPVS 151 (157)
Q Consensus 85 NVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~--s~mTvk~gVe~~LKe~IPEI 151 (157)
.-|++-+.++.|+..+ | +++ ++|++..++|.+.-.+.- .-+..|.++.+-|.+++|++
T Consensus 152 t~eei~~~~~~~~~~~-~-------~~~-~~~~~~~~~i~~p~~~~~~~~~~~~k~~~~~~i~~~~~~~ 211 (231)
T 3prb_A 152 KKNIVKEIVKMYVPRL-S-------DVK-VTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDA 211 (231)
T ss_dssp HHHHHHHHHHHHCTTC-C-------CCE-EEEETTEEEEECCTTGGGSTTHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHhcCCc-c-------ceE-EEEeCCeEEEEcCHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 3444445555666421 2 344 788899999999886654 56788999999999999855
No 12
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=46.89 E-value=25 Score=27.00 Aligned_cols=43 Identities=7% Similarity=0.157 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc
Q 031595 81 LTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH 131 (157)
Q Consensus 81 LteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~ 131 (157)
+..+.|+++|++++-.+.. .+..+||+++.| ...++..-.++.
T Consensus 36 ~~~~~v~~~l~~L~~~y~~-------~~rg~~l~~v~~-gy~l~t~~~~~~ 78 (162)
T 1t6s_A 36 FTPSELQEAVDELNRDYEA-------TGRTFRIHAIAG-GYRFLTEPEFAD 78 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHH-------HTCSEEEEEETT-EEEEEECGGGHH
T ss_pred CCHHHHHHHHHHHHHHhhh-------CCCCEEEEEECC-EEEEEEcHHHHH
Confidence 6778899999999888863 367799999954 567777766655
No 13
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=44.70 E-value=68 Score=26.24 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHhhc-CccccCccccccccccccccC--------CCcceeeeeccccccccccCCCCCCCcccchHHHHHHHHHH
Q 031595 23 FLRKILSTC-NHSKAFNKQTTHCRQKKLSRR--------KPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADA 93 (157)
Q Consensus 23 ~l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~--------~~~~~~t~~~r~~~~~~~~~~~~~~~LeLteENVE~vLdei 93 (157)
-++++...+ .+....--|+.|.+....+.. ...+++-+ .-........+-+||+|+|+++.++.
T Consensus 82 ~~~~~~~~vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS-------~~~~~~~~~~p~~mt~~eI~~ii~~f 154 (349)
T 3hgj_A 82 GLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPS-------PIPFDEGYPVPEPLDEAGMERILQAF 154 (349)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESS-------SCCSSTTCCCCEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeccCCccccccccccccccCCCcccCCC-------cccccCCCCCCccCCHHHHHHHHHHH
Confidence 467787777 333334578999886553211 00111110 00000112356789999999999887
Q ss_pred HHHHHhhhccccccccceEEEEecC-----------CeEEEEEeeccCc---chhhHHHHHHHHHHhhCC
Q 031595 94 RGELAQLFDTSVGITGVAELAELDG-----------PFVKIRLRGRFWH---KRSTVIARLANYLKQRIP 149 (157)
Q Consensus 94 RP~L~a~fD~sVGdGGdVELVeIDG-----------pvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IP 149 (157)
.-.-...-+ .| .+.|||.+ |....| +...++ +++-+...|-+.+++.++
T Consensus 155 ~~aA~~a~~-----aG-fDgVEih~a~GyLl~qFlsp~~N~R-~D~yGGslenR~r~~~eiv~aVR~avG 217 (349)
T 3hgj_A 155 VEGARRALR-----AG-FQVIELHMAHGYLLSSFLSPLSNQR-TDAYGGSLENRMRFPLQVAQAVREVVP 217 (349)
T ss_dssp HHHHHHHHH-----TT-CCEEEEEECTTSHHHHHHCTTTCCC-CSTTSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-----cC-CCEEEECCccchHHHHhcCCccccc-CCCCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 543322111 11 33455541 333444 333333 455566667778888886
No 14
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta dimeric protein with A fold resembling A hotdog, PSI; 1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Probab=43.21 E-value=22 Score=25.62 Aligned_cols=39 Identities=8% Similarity=-0.076 Sum_probs=27.7
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEe
Q 031595 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLR 126 (157)
Q Consensus 79 LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~ 126 (157)
|+.+.+.+++.+++--|+.. .=.+++++++++.+++++.
T Consensus 11 ~~~~~~~l~~~~~~~~P~~~---------~lGi~i~~~~~g~~~~~~~ 49 (155)
T 1t82_A 11 MDELLNRLRQTWHSTIPVSE---------FMQIAPLSFTDGELSVSAP 49 (155)
T ss_dssp CHHHHHHHHHHHHHHCHHHH---------HTTCEEEEEETTEEEEECC
T ss_pred hhHHHHHHHHHHHhhCCcHH---------hCceEEEEEeCCEEEEEEE
Confidence 44455666676766557665 3458999999889999875
No 15
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=41.51 E-value=61 Score=23.92 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhccccccccceEEEEec-CCeEEEEEeecc
Q 031595 86 VRQVIADARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRF 129 (157)
Q Consensus 86 VE~vLdeiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~GaC 129 (157)
.|++++-++--|....+.-...|+++|+.-|+ +++-...|++++
T Consensus 159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~ 203 (204)
T 1ryp_J 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQ 203 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCC
Confidence 34445555555554444334558899999887 666555566553
No 16
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=41.01 E-value=50 Score=27.43 Aligned_cols=112 Identities=16% Similarity=0.302 Sum_probs=58.3
Q ss_pred HHHHHHhhc-CccccCccccccccccccccCCCcceeeeeccccccccccCCCCCCCcccchHHHHHHHHHHHHHHHhhh
Q 031595 23 FLRKILSTC-NHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLF 101 (157)
Q Consensus 23 ~l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~~~~~~~t~~~r~~~~~~~~~~~~~~~LeLteENVE~vLdeiRP~L~a~f 101 (157)
-++++...+ .+....--|+.|.+....+...+ +++.+- -........+-+||+|+|+++.++..-.-...-
T Consensus 82 ~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~-~~apS~-------i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~ 153 (343)
T 3kru_A 82 ELKKIVDICKANGAVMGIQLAHAGRKCNISYED-VVGPSP-------IKAGDRYKLPRELSVEEIKSIVKAFGEAAKRAN 153 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGCCCTTSC-CEESSS-------CCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEeeehhhccCccCcchhh-ccCCCc-------CCCCccccCchhcCHHHHHHHHHHHHHHHhhcc
Confidence 467787777 33344457999998755431111 122100 000112345678999999999988644322111
Q ss_pred ccccccccceEEEEec-----------CCeEEEEEeeccCc---chhhHHHHHHHHHHhhCC
Q 031595 102 DTSVGITGVAELAELD-----------GPFVKIRLRGRFWH---KRSTVIARLANYLKQRIP 149 (157)
Q Consensus 102 D~sVGdGGdVELVeID-----------GpvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IP 149 (157)
+ .| .+-|||. -|....| +...++ +++-+...|-+.+++.+|
T Consensus 154 ~-----aG-fDgVEih~ahGYLl~qFlsp~~N~R-~D~yGGslenR~rf~~eiv~aVr~avg 208 (343)
T 3kru_A 154 L-----AG-YDVVEIHAAHGYLIHEFLSPLSNKR-KDEYGNSIENRARFLIEVIDEVRKNWP 208 (343)
T ss_dssp H-----HT-CSEEEEEECTTSHHHHHHCTTTCCC-CSTTSSSHHHHTHHHHHHHHHHHHTSC
T ss_pred c-----cC-CceEEEecccchhHHHhhccccccc-chhhccchHhHHHHHHHHHHHHHhcCC
Confidence 1 11 2235554 1333333 223333 466666667777777775
No 17
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=38.50 E-value=60 Score=23.96 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhccccccccceEEEEec-CCeEEEEEeec
Q 031595 86 VRQVIADARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGR 128 (157)
Q Consensus 86 VE~vLdeiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~Ga 128 (157)
.|++++-++--|....+.-...|+++|+.-|+ +++-...|+++
T Consensus 160 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r 203 (205)
T 1iru_J 160 PDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKAR 203 (205)
T ss_dssp HHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecC
Confidence 34444455444544444445568899998887 55555555554
No 18
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=37.69 E-value=31 Score=27.36 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccccc-ceEEEEec
Q 031595 83 EDNVRQVIADARGELAQLFDTSVGITG-VAELAELD 117 (157)
Q Consensus 83 eENVE~vLdeiRP~L~a~fD~sVGdGG-dVELVeID 117 (157)
.|.++++++++|-+|.. .|+ ++|.++||
T Consensus 46 ~~~~~~A~~~i~~~l~~-------~~~i~~e~~~vd 74 (244)
T 2wte_A 46 VSGTRAAIESLRAQISR-------LNYPPPRIYEIE 74 (244)
T ss_dssp CHHHHHHHHHHHHHHHH-------HTCCCEEEEEEC
T ss_pred chhHHHHHHHHHHHHHH-------cCCCceEEEEEC
Confidence 36899999999999986 344 78999887
No 19
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=36.99 E-value=31 Score=30.58 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc-chhhHHHHHHHHHHhhC
Q 031595 85 NVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH-KRSTVIARLANYLKQRI 148 (157)
Q Consensus 85 NVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~-s~mTvk~gVe~~LKe~I 148 (157)
.++++|.+++-...+... .+=.|.=||.+||.+.|=.+-+=.- ....+-..+...||+||
T Consensus 10 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (651)
T 3af5_A 10 QVDQILRDIRAVVNQMVP----KEAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRI 70 (651)
T ss_dssp CHHHHHHHHHHHHTTTSC----TTSCEEEEEECSSSEEEEESSCC-----CCSHHHHHHHHTSCE
T ss_pred hHHHHHHHHHHHHHHhCC----CCCeEEEEEEECCeEEEEeCCHHHhhcccHHHHHHHHHhhceE
Confidence 467777888777766443 2335555777899998877665442 23445556777777776
No 20
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=35.93 E-value=58 Score=26.74 Aligned_cols=110 Identities=15% Similarity=0.297 Sum_probs=56.8
Q ss_pred HHHHHHhhc-CccccCccccccccccccccCCCcceeeeeccccccccccCCCCCCCcccchHHHHHHHHHHHHHHHhhh
Q 031595 23 FLRKILSTC-NHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGELAQLF 101 (157)
Q Consensus 23 ~l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~~~~~~~t~~~r~~~~~~~~~~~~~~~LeLteENVE~vLdeiRP~L~a~f 101 (157)
-++|+...+ .+....--|+.|.+....+... +++-+- -........+-+||+|+|+++.++..-.-...-
T Consensus 84 ~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~--~~~pS~-------~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~ 154 (340)
T 3gr7_A 84 GLRELVGLVKEHGAAIGIQLAHAGRKSQVPGE--IIAPSA-------VPFDDSSPTPKEMTKADIEETVQAFQNGARRAK 154 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCGGGCCSSSC--CEESSS-------CCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeccCCCccCCCCC--ccCCCC-------ccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 467887777 3333345799999876544111 121100 000112345678999999999988744322111
Q ss_pred ccccccccceEEEEec-C----------CeEEEEEeeccCc---chhhHHHHHHHHHHhhC
Q 031595 102 DTSVGITGVAELAELD-G----------PFVKIRLRGRFWH---KRSTVIARLANYLKQRI 148 (157)
Q Consensus 102 D~sVGdGGdVELVeID-G----------pvVkVrL~GaC~~---s~mTvk~gVe~~LKe~I 148 (157)
+ .| .+-|||. + |....|- ...++ +++-+...|-+.+++.+
T Consensus 155 ~-----aG-fDgVEih~a~GyLl~qFlsp~~N~R~-D~yGGslenR~r~~~eiv~avr~~v 208 (340)
T 3gr7_A 155 E-----AG-FDVIEIHAAHGYLINEFLSPLSNRRQ-DEYGGSPENRYRFLGEVIDAVREVW 208 (340)
T ss_dssp H-----HT-CSEEEEEECTTCHHHHHHCTTTCCCC-STTSSSHHHHHHHHHHHHHHHHHHC
T ss_pred H-----cC-CCEEEEccccchHHHHcCCCccCcCC-CcccCCHHHHHHHHHHHHHHHHHhc
Confidence 1 11 2345554 2 3333332 22233 45555556666777766
No 21
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=33.95 E-value=66 Score=23.89 Aligned_cols=43 Identities=5% Similarity=-0.043 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhccccccccceEEEEec-CCeEEEEEeecc
Q 031595 87 RQVIADARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGRF 129 (157)
Q Consensus 87 E~vLdeiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~GaC 129 (157)
|++++-++--|.+..+.-...|++||+.-|+ +++-...+++++
T Consensus 169 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~ 212 (213)
T 1iru_M 169 DRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRK 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCC
Confidence 3344444444444333334457899998887 666666666653
No 22
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=33.20 E-value=87 Score=23.31 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=24.0
Q ss_pred CCcccchHH----HHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEe
Q 031595 77 PPLDLTEDN----VRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLR 126 (157)
Q Consensus 77 ~~LeLteEN----VE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~ 126 (157)
.++.|++.. ++++|+.|--+|-.+.|.. ..+.|++ ++..|+++.|.+.
T Consensus 5 ~~~~m~e~ef~~lad~~L~~ie~~le~~~d~~-~~~~d~D-~e~~~gVLti~f~ 56 (129)
T 3t3l_A 5 HPGSLDETTYERLAEETLDSLAEFFEDLADKP-YTFEDYD-VSFGSGVLTVKLG 56 (129)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHTST-TSCTTCE-EEEETTEEEEECC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHhhhccc-cccccee-eecCCCEEEEEEc
Confidence 345555544 5666777777776644410 0124555 3445667777664
No 23
>2qwz_A Phenylacetic acid degradation-related protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=32.90 E-value=64 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=25.1
Q ss_pred CcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEe
Q 031595 78 PLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLR 126 (157)
Q Consensus 78 ~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~ 126 (157)
.+.++.+.+++.|++--|+.. -++++++++++.+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~p~~~----------lg~~v~~~~~g~~~~~~~ 59 (159)
T 2qwz_A 21 ELVFDKDGLSAYLEEVFPQIQ----------GEFSIDALAKGEITMRLN 59 (159)
T ss_dssp CCSSCHHHHHHHHHHHCGGGT----------TTEEEEEECSSEEEEEEC
T ss_pred CCcCCHHHHHHHHHhhCcccc----------CCeEEEEecCCEEEEEEE
Confidence 344566677777765433321 357888998778887765
No 24
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=32.23 E-value=52 Score=26.64 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCc
Q 031595 80 DLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWH 131 (157)
Q Consensus 80 eLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~ 131 (157)
.+..+.|+++|++++-.+.. .+..++|+++.| ...++.+-.++.
T Consensus 41 ~~~~~~v~~~l~~L~~~y~~-------~~rGiel~~v~~-gy~l~T~~e~~~ 84 (219)
T 2z99_A 41 EQPVYRVAAKLQLMADELTG-------RDSGIDLRHTSE-GWRMYTRARFAP 84 (219)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-------TTCSEEEEEETT-EEEEEECGGGHH
T ss_pred CcCHHHHHHHHHHHHHHHhh-------CCCCEEEEEECC-EEEEEEcHHHHH
Confidence 45678899999999888863 366799999954 566776666554
No 25
>1sh8_A Hypothetical protein PA5026; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Pseudomonas aeruginosa} SCOP: d.38.1.5
Probab=30.71 E-value=61 Score=22.36 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=29.3
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEe
Q 031595 79 LDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLR 126 (157)
Q Consensus 79 LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~ 126 (157)
|.++.|.+++.+..--|+... . .+++++++++.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~-------l--g~~~~~~~~~~~~~~~~ 41 (154)
T 1sh8_A 3 MPLPTELARHLTEEKIAFVQR-------S--GLRAEVLEPGYVRLRMP 41 (154)
T ss_dssp CSSCHHHHHHHHHHSSHHHHH-------H--TCEEEEEETTEEEEEEC
T ss_pred CCcCHHHHHHHhhccCCchhh-------c--ceEEEEEeCCeEEEEcc
Confidence 557788888888877788874 2 36788888778888774
No 26
>3hdu_A Putative thioesterase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 2.50A {Syntrophus aciditrophicus SB}
Probab=30.68 E-value=64 Score=22.84 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.9
Q ss_pred eEEEEecCCeEEEEEeec
Q 031595 111 AELAELDGPFVKIRLRGR 128 (157)
Q Consensus 111 VELVeIDGpvVkVrL~Ga 128 (157)
+++++++++.+.+++.=.
T Consensus 32 ~~~~~~~~g~~~~~~~~~ 49 (157)
T 3hdu_A 32 LKVRFISPEQVKLSFEMR 49 (157)
T ss_dssp EEEEEECSSEEEEEEEES
T ss_pred CEEEEecCCEEEEEEECC
Confidence 889999988888888755
No 27
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=30.63 E-value=44 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhc-----------------c-ccccccceEEEEecCCeEE
Q 031595 89 VIADARGELAQLFD-----------------T-SVGITGVAELAELDGPFVK 122 (157)
Q Consensus 89 vLdeiRP~L~a~fD-----------------~-sVGdGGdVELVeIDGpvVk 122 (157)
.-++|+.||.+.|. + -.|+||++++.+|+.+.++
T Consensus 153 ~~~~i~~FL~tFFk~Y~sa~~~eL~yy~~~~~~l~gL~g~~~f~~l~~~~vy 204 (261)
T 3ub1_A 153 KTKKITDSVSQFFKAYYEQNQTQIDYFLVDGADIKGAGQKFSFNKIDRINIY 204 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHTTBCTTCCCCCCCSCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHhcCCCcccCCCCcEEEEEeccEEEe
Confidence 45666777766542 2 4689999999999876544
No 28
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=28.98 E-value=27 Score=29.12 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCccccCccc
Q 031595 22 CFLRKILSTCNHSKAFNKQ 40 (157)
Q Consensus 22 ~~l~~i~~~c~~s~~f~~~ 40 (157)
.|..|||..|..|+-|.|.
T Consensus 172 PFVcKvLe~~k~SkiFkPP 190 (249)
T 4b89_A 172 PFVTKILQRASESKIFKPP 190 (249)
T ss_dssp HHHHHHHGGGTTCSSSSTT
T ss_pred eHHHHHHHhcccCCccCCC
Confidence 5899999999999999664
No 29
>3f5o_A Thioesterase superfamily member 2; hotdog fold, hydrolase; HET: UOC COA P6G; 1.70A {Homo sapiens} SCOP: d.38.1.5 PDB: 2f0x_A* 2cy9_A
Probab=28.93 E-value=59 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.6
Q ss_pred ccceEEEEecCCeEEEEEe
Q 031595 108 TGVAELAELDGPFVKIRLR 126 (157)
Q Consensus 108 GGdVELVeIDGpvVkVrL~ 126 (157)
-|++++++++++.+.+++.
T Consensus 25 lg~~~~~~~~~g~~~~~~~ 43 (148)
T 3f5o_A 25 LGKITLVSAAPGKVICEMK 43 (148)
T ss_dssp GTTCEEEEEETTEEEEEEE
T ss_pred hCCeEEEEecCCEEEEEEE
Confidence 4679999999888888874
No 30
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=28.06 E-value=64 Score=24.00 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=24.4
Q ss_pred ccceEEEEecCCeEEEEEeeccCcchhhHHHHHHH
Q 031595 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLAN 142 (157)
Q Consensus 108 GGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~ 142 (157)
..||+|++++++.+.+-+.| ...-|+++++.
T Consensus 67 AA~V~lv~~~~g~g~v~i~G----dvsaV~aAvea 97 (124)
T 3cgi_A 67 SGAVEIGFLDRFTGAVVLTG----DVSAVEYALKQ 97 (124)
T ss_dssp SSSEEEEEEETTTTEEEEEE----CHHHHHHHHHH
T ss_pred hcCcEEEEEECCEEEEEEEE----CHHHHHHHHHH
Confidence 57899999998888888998 35566666655
No 31
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=27.39 E-value=9.7 Score=30.35 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHH
Q 031595 81 LTEDNVRQVIADARGEL 97 (157)
Q Consensus 81 LteENVE~vLdeiRP~L 97 (157)
|+.|||++++..++||-
T Consensus 182 L~peNV~~Ai~~~~P~g 198 (228)
T 4aaj_A 182 LNAENVEEVIKVVKPYG 198 (228)
T ss_dssp CCTTTHHHHHHHHCCSE
T ss_pred CCHHHHHHHHHHhCCCE
Confidence 68999999999999974
No 32
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=27.20 E-value=1.7e+02 Score=24.46 Aligned_cols=121 Identities=14% Similarity=0.076 Sum_probs=61.1
Q ss_pred HHHHHHhhc-CccccCccccccccccccccCC--Ccceeee-ec-cccccccccCCCCCCCcccchHHHHHHHHHHHHHH
Q 031595 23 FLRKILSTC-NHSKAFNKQTTHCRQKKLSRRK--PILLSTS-ID-RGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGEL 97 (157)
Q Consensus 23 ~l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~~--~~~~~t~-~~-r~~~~~~~~~~~~~~~LeLteENVE~vLdeiRP~L 97 (157)
-++|+...| .+....--|+.|.+....+... ..+++-+ +. .+.............+-+||+|.|+++.++..-.-
T Consensus 88 ~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii~~f~~AA 167 (361)
T 3gka_A 88 GWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGA 167 (361)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 467887777 3333445789998865543211 1112111 10 00000000111134567899999999998874432
Q ss_pred HhhhccccccccceEEEEecC-----------CeEEEEEeeccCc---chhhHHHHHHHHHHhhCCc
Q 031595 98 AQLFDTSVGITGVAELAELDG-----------PFVKIRLRGRFWH---KRSTVIARLANYLKQRIPV 150 (157)
Q Consensus 98 ~a~fD~sVGdGGdVELVeIDG-----------pvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPE 150 (157)
...-+ .| .+.|||.+ |.+.-|- ...++ +++-+...|-+.+++.++.
T Consensus 168 ~~A~~-----aG-fDgVEih~a~GYLl~QFLsp~~N~Rt-D~yGGslenR~rf~~evv~aVr~~vg~ 227 (361)
T 3gka_A 168 ENARA-----AG-FDGVEVHGANGYLLDQFLQDSANRRT-DAYGGSIENRARLLLEVVDAAIDVWSA 227 (361)
T ss_dssp HHHHH-----TT-CSEEEEECCTTSHHHHHHSTTTCCCC-STTSSSHHHHSHHHHHHHHHHHHHHCG
T ss_pred HHHHH-----cC-CCEEEECCcCccHHHhccCccccccc-CCCCCChhhcHHHHHHHHHHHHHHcCC
Confidence 21111 11 33466652 2333332 22233 4666767777888888764
No 33
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=26.95 E-value=45 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=19.9
Q ss_pred CcccchHHHHHHHHHHHHHHHhhhc
Q 031595 78 PLDLTEDNVRQVIADARGELAQLFD 102 (157)
Q Consensus 78 ~LeLteENVE~vLdeiRP~L~a~fD 102 (157)
.-.++|++++++|++++-.|.+ +|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Ll~-ad 67 (328)
T 3e70_C 44 TVEIKEKDVDKALDELEIDLLE-AD 67 (328)
T ss_dssp EEECCHHHHHHHHHHHHHHHHH-TT
T ss_pred hccCCHHHHHHHHHHHHHHHHH-cC
Confidence 4568999999999999888876 66
No 34
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=26.85 E-value=2.1e+02 Score=24.00 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=60.5
Q ss_pred HHHHHHhhc-CccccCccccccccccccccCC--Ccceeee-ec-cccccccccCCCCCCCcccchHHHHHHHHHHHHHH
Q 031595 23 FLRKILSTC-NHSKAFNKQTTHCRQKKLSRRK--PILLSTS-ID-RGYLTRTAAGGVPPPPLDLTEDNVRQVIADARGEL 97 (157)
Q Consensus 23 ~l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~~--~~~~~t~-~~-r~~~~~~~~~~~~~~~LeLteENVE~vLdeiRP~L 97 (157)
-++++...| ......--|+.|.+....+... ..+++-+ +. .+.............+-+||+|.|+++.++..-.-
T Consensus 80 ~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA 159 (362)
T 4ab4_A 80 GWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGA 159 (362)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 467787777 3333345789998865543211 1112111 10 00000000111234567899999999998864332
Q ss_pred HhhhccccccccceEEEEecC-----------CeEEEEEeeccCc---chhhHHHHHHHHHHhhCCc
Q 031595 98 AQLFDTSVGITGVAELAELDG-----------PFVKIRLRGRFWH---KRSTVIARLANYLKQRIPV 150 (157)
Q Consensus 98 ~a~fD~sVGdGGdVELVeIDG-----------pvVkVrL~GaC~~---s~mTvk~gVe~~LKe~IPE 150 (157)
...-+ .| .+.|||.+ |.+.-|- ...++ +++-+...|-+.+++.+|.
T Consensus 160 ~~a~~-----aG-fDgVEih~a~GYLl~QFLSp~~N~Rt-D~yGGslenR~rf~~eiv~aVr~~vg~ 219 (362)
T 4ab4_A 160 ENAKA-----AG-FDGVEIHGANGYLLDQFLQSSTNQRT-DRYGGSLENRARLLLEVTDAAIEVWGA 219 (362)
T ss_dssp HHHHH-----TT-CSEEEEECCTTSHHHHHHSTTTCCCC-STTSSSHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH-----cC-CCEEEECCcCccHHHhhcCCcccccc-CCCCCchhhHHHHHHHHHHHHHHhcCC
Confidence 21111 11 33466642 2333332 22233 4666666777888888864
No 35
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=26.47 E-value=1.5e+02 Score=21.00 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=23.4
Q ss_pred ccceEEEEec---CCeEEEEEeeccCcchhhHHHHHHH
Q 031595 108 TGVAELAELD---GPFVKIRLRGRFWHKRSTVIARLAN 142 (157)
Q Consensus 108 GGdVELVeID---GpvVkVrL~GaC~~s~mTvk~gVe~ 142 (157)
..||||+.++ ++.+.+-++|- ..-|++.|+.
T Consensus 26 AA~V~lv~~~~~~~G~~~vii~Gd----VsaV~~Av~a 59 (99)
T 3cim_A 26 AARVTLVGYEKIGSGRVTVIVRGD----VSEVQASVSA 59 (99)
T ss_dssp HSSEEEEEEEEEETTEEEEEEEEC----HHHHHHHHHH
T ss_pred hCCcEEEEEEecCCcEEEEEEEEc----HHHHHHHHHH
Confidence 5789999998 77899999994 4445555554
No 36
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=25.93 E-value=60 Score=20.89 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=26.0
Q ss_pred ecCCeEEEEEeeccCc-chhhHHHHHHHHHHhh-CCcCcC
Q 031595 116 LDGPFVKIRLRGRFWH-KRSTVIARLANYLKQR-IPVSPL 153 (157)
Q Consensus 116 IDGpvVkVrL~GaC~~-s~mTvk~gVe~~LKe~-IPEI~~ 153 (157)
..++++.+++.|..-. +...++..+.+.+.+. .+.+.+
T Consensus 9 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvl 48 (116)
T 1th8_B 9 VKQDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVL 48 (116)
T ss_dssp EETTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEE
T ss_pred EECCEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEE
Confidence 3588999999998765 4566777777766554 444444
No 37
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.48 E-value=62 Score=28.56 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.7
Q ss_pred ccceEEEEecCCeEEEEEeeccCc-chhhHHHHHHHHHHhhC
Q 031595 108 TGVAELAELDGPFVKIRLRGRFWH-KRSTVIARLANYLKQRI 148 (157)
Q Consensus 108 GGdVELVeIDGpvVkVrL~GaC~~-s~mTvk~gVe~~LKe~I 148 (157)
+=.|.=||.+||.+.|=.+-+=.- ....+-..+...||+||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (636)
T 2ycb_A 20 RVQVAKVEFEGPEVVIYTKNPEIITENGNLIRDIAKDIRKRI 61 (636)
T ss_dssp TSCEEEEEEETTEEEEEESCTHHHHSCTHHHHHHHHHHTSCE
T ss_pred CCeEEEEEEECCEEEEEeCCHHHhhcccHHHHHHHHHhhceE
Confidence 335555777899999877765432 23456667788888876
No 38
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=25.14 E-value=1.3e+02 Score=20.59 Aligned_cols=38 Identities=26% Similarity=0.512 Sum_probs=23.0
Q ss_pred ccceEE-EEec-CCeEEEEEeeccCcchhhHHHHHHHHHH
Q 031595 108 TGVAEL-AELD-GPFVKIRLRGRFWHKRSTVIARLANYLK 145 (157)
Q Consensus 108 GGdVEL-VeID-GpvVkVrL~GaC~~s~mTvk~gVe~~LK 145 (157)
||.|++ ++++ |-+..+++.|-|-....-....+|+.|+
T Consensus 16 ~G~v~v~l~v~~G~I~~vki~GDFf~~p~~~i~~le~~L~ 55 (91)
T 3r07_C 16 KGLIRVTLDLDGNRIKDIHISGDFFMFPEDSINRLEDMLR 55 (91)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEEBCCBSTTHHHHHHHHHT
T ss_pred CcEEEEEEEEcCCEEEEEEEEcccCCCcchhHHHHHHHHC
Confidence 677763 3455 5566699999998642233444555443
No 39
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=25.13 E-value=1.1e+02 Score=25.09 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCcccchHHHHHHHHHHHHHHHhhhccccccccceEEEEecC-----------CeEEEEEeeccCc---chhhHHHHHH
Q 031595 76 PPPLDLTEDNVRQVIADARGELAQLFDTSVGITGVAELAELDG-----------PFVKIRLRGRFWH---KRSTVIARLA 141 (157)
Q Consensus 76 ~~~LeLteENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDG-----------pvVkVrL~GaC~~---s~mTvk~gVe 141 (157)
..+-+||+|+|+++.++..-.-...-+ .| .+-|||.+ |....| +...++ +++-+...|-
T Consensus 143 ~~p~~mt~~eI~~ii~~f~~aA~~a~~-----aG-fDgVEih~a~GyLl~qFlsp~~N~R-~D~yGGslenR~r~~~eiv 215 (363)
T 3l5l_A 143 KVPREMTLDDIARVKQDFVDAARRARD-----AG-FEWIELHFAHGYLGQSFFSEHSNKR-TDAYGGSFDNRSRFLLETL 215 (363)
T ss_dssp CCCEECCHHHHHHHHHHHHHHHHHHHH-----HT-CSEEEEEECTTSHHHHHHCTTTCCC-CSTTSSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHH-----cC-CCEEEEccccchHHHHccCCCcCCC-CcccCcCHHHHHHHHHHHH
Confidence 456789999999999887443221111 11 22455542 223333 233343 4555556666
Q ss_pred HHHHhhCC
Q 031595 142 NYLKQRIP 149 (157)
Q Consensus 142 ~~LKe~IP 149 (157)
+.+++.+|
T Consensus 216 ~aVr~avg 223 (363)
T 3l5l_A 216 AAVREVWP 223 (363)
T ss_dssp HHHHTTSC
T ss_pred HHHHHHcC
Confidence 77777775
No 40
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=24.91 E-value=2e+02 Score=21.39 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCcCCCC
Q 031595 83 EDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCR 156 (157)
Q Consensus 83 eENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~~~~~ 156 (157)
++..+++|+.|+--|.+ -|++++ .+||++.-=+... -...+....++.+++ ..|.|
T Consensus 74 ~~Qt~~~l~Ni~a~L~~-------aG~~l~------dVVkvtvyl~d~~----df~~~n~v~~~~f~~-~~PAr 129 (153)
T 3quw_A 74 SEKAEQVFQNVKNILAE-------SNSSLD------NIVKVNVFLADMK----NFAEFNSVYAKHFHT-HKPAR 129 (153)
T ss_dssp HHHHHHHHHHHHHHHHH-------TTCCGG------GEEEEEEEESCGG----GHHHHHHHHHHHSSS-CCCEE
T ss_pred HHHHHHHHHHHHHHHHH-------cCCCHH------HEEEEEEEECCHH----HHHHHHHHHHHHcCC-CCCcE
Confidence 78899999999999987 244332 3666655333222 234455667777773 34555
No 41
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=24.78 E-value=53 Score=23.95 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.5
Q ss_pred ccceEEEEec--CCeEEEEEeec
Q 031595 108 TGVAELAELD--GPFVKIRLRGR 128 (157)
Q Consensus 108 GGdVELVeID--GpvVkVrL~Ga 128 (157)
-|+|++.|+| |.+|+|+=+|.
T Consensus 12 kG~V~I~evd~~G~fV~L~N~s~ 34 (123)
T 3hn9_A 12 TGNVCIEEIDVDGKFIRLKNTSE 34 (123)
T ss_dssp SSSEEEEEECTTSSEEEEEECSS
T ss_pred CCCEEEEEEcCCCCEEEEEECCC
Confidence 4999999998 89999976654
No 42
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=24.67 E-value=1.3e+02 Score=22.59 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhccccccccceEEEEec-CCeEEEEEeec
Q 031595 87 RQVIADARGELAQLFDTSVGITGVAELAELD-GPFVKIRLRGR 128 (157)
Q Consensus 87 E~vLdeiRP~L~a~fD~sVGdGGdVELVeID-GpvVkVrL~Ga 128 (157)
|++++-++--|....+.-+..|++||+.-|+ +++-...++.+
T Consensus 178 eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r 220 (222)
T 1ryp_M 178 EEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELK 220 (222)
T ss_dssp HHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeecc
Confidence 3344444444443333334457889988887 55555555543
No 43
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=23.57 E-value=64 Score=21.84 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=32.9
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCC
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IP 149 (157)
.||+..++|. .-|..|-|. ...++.|.+.++|.=.. ......+|++.-|
T Consensus 17 FR~~v~~~A~-~lgl~G~V~--N~~dG~Vei~~eG~~~~-----i~~f~~~l~~~~p 65 (91)
T 2fhm_A 17 FRYFVQMEAD-KRKLAGWVK--NRDDGRVEILAEGPENA-----LQSFVEAVKNGSP 65 (91)
T ss_dssp HHHHHHHHHH-HTTCEEEEE--ECTTSCEEEEEEECHHH-----HHHHHHHHHTTCS
T ss_pred HHHHHHHHHH-HcCCeEEEE--ECCCCcEEEEEEeCHHH-----HHHHHHHHHhCCC
Confidence 4888888776 567888765 45577899999996332 2334556666544
No 44
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=23.50 E-value=1.2e+02 Score=20.69 Aligned_cols=45 Identities=24% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCC
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IP 149 (157)
.||+..++|. .-|..|-|. ...++ |.+.++|.= .....+|++.-|
T Consensus 22 FR~~v~~~A~-~lgL~G~Vr--N~~dG-Vei~~eG~~--------~~f~~~l~~~~P 66 (91)
T 1gxu_A 22 FRPFVWQLAQ-QLNLHGDVC--NDGDG-VEVRLREDP--------EVFLVQLYQHCP 66 (91)
T ss_dssp HHHHHHHHHH-HHTCCEEEE--ECSSS-EEEEESSCC--------HHHHHHHHHTCC
T ss_pred HHHHHHHHHH-HcCCeEEEE--ECCCc-EEEEEEECH--------HHHHHHHhhCCC
Confidence 4788887765 567888765 45566 999999865 455667776555
No 45
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=23.42 E-value=59 Score=21.95 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeec
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGR 128 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~Ga 128 (157)
.||+..++|. .-|..|-|. ..+++.|.+.++|.
T Consensus 17 FR~~v~~~A~-~lgl~G~V~--N~~dG~Vei~~eG~ 49 (88)
T 1ulr_A 17 YRAFAQKKAL-ELGLSGYAE--NLPDGRVEVVAEGP 49 (88)
T ss_dssp HHHHHHHHHH-HTTCEEEEE--ECTTSCEEEEEESC
T ss_pred HHHHHHHHHH-HcCCeEEEE--ECCCCcEEEEEEeC
Confidence 4888888776 567888865 45678899999986
No 46
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=22.88 E-value=1.5e+02 Score=21.20 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCcCCCCC
Q 031595 82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT 157 (157)
Q Consensus 82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~~~~~~ 157 (157)
-++..+++|+.++--|.+ -|+++ +.+||+++-=+. |.-...+....++.+|+-..|.||
T Consensus 43 ~~~Q~~~~l~nl~~~L~~-------aG~~l------~~Vvk~tvyl~d----~~df~~~n~v~~~~f~~~~~PArt 101 (128)
T 3kjj_A 43 AAEQTADVLAQIDRWLAE-------CGSDK------AHVLDAVIYLRD----MGDYAEMNGVWDAWVAAGRTPARA 101 (128)
T ss_dssp HHHHHHHHHHHHHHHHHH-------TTCCG------GGEEEEEEEESC----GGGHHHHHHHHHHHSCTTCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCCH------HHEEEEEEEECC----HHHHHHHHHHHHHHhCCCCCCCEE
Confidence 467889999999999986 23332 236666553222 222345667778888876667664
No 47
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=22.85 E-value=1.4e+02 Score=25.17 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.0
Q ss_pred EEEec--CCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCcCC
Q 031595 113 LAELD--GPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLP 154 (157)
Q Consensus 113 LVeID--GpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~~~ 154 (157)
||.-. +|.++|..++.=......+...+.+.+++..|++.+|
T Consensus 419 lvRpSgTEP~~rvy~Ea~~~~~~~~l~~~~~~~i~~~~~~~~~~ 462 (463)
T 1p5d_X 419 LVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVP 462 (463)
T ss_dssp EEEECSSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHCTTSCCC
T ss_pred EEEecCCCceEEEEEEECCHHHHHHHHHHHHHHHHhhcccccCC
Confidence 56555 6777777777533345567777888999999999887
No 48
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.74 E-value=61 Score=23.66 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=17.8
Q ss_pred ccceEEEEec--CCeEEEEEeec
Q 031595 108 TGVAELAELD--GPFVKIRLRGR 128 (157)
Q Consensus 108 GGdVELVeID--GpvVkVrL~Ga 128 (157)
-|+|++.|+| |.+|+|+=+|.
T Consensus 6 kG~V~I~e~d~~g~fV~l~N~s~ 28 (121)
T 1ifr_A 6 SGRVAVEEVDEEGKFVRLRNKSN 28 (121)
T ss_dssp CSSEEEEEECTTSSEEEEEECSS
T ss_pred cCCEEEEEECCCCCEEEEEeCCC
Confidence 5999999998 99999986654
No 49
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=22.61 E-value=1.7e+02 Score=20.53 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchh-hHHHHHHHHHHhhCCcCcCCCCC
Q 031595 82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRS-TVIARLANYLKQRIPVSPLPCRT 157 (157)
Q Consensus 82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~m-Tvk~gVe~~LKe~IPEI~~~~~~ 157 (157)
-++..+++|+.|+--|.+ -|+++ +.+||+.+-=+. | .-...+.+..++.+++-..|.||
T Consensus 49 ~~~Q~~~~l~ni~~~L~~-------aG~~~------~~vvk~~vyl~d----~~~~~~~~~~~~~~~f~~~~~Part 108 (131)
T 1pf5_A 49 FQQQVRLAFDNLHATLAA-------AGCTF------DDIIDVTSFHTD----PENQFEDIMTVKNEIFSAPPYPNWT 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TTCCG------GGEEEEEEEESS----GGGTHHHHHHHHHHHSCSSSCCCCE
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCCH------HHEEEEEEEEcC----cHHhHHHHHHHHHHHcCCCCCCCeE
Confidence 477899999999999986 23433 256666533222 2 23345677778888765667664
No 50
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=22.25 E-value=40 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHHhhcCccccCcc
Q 031595 22 CFLRKILSTCNHSKAFNK 39 (157)
Q Consensus 22 ~~l~~i~~~c~~s~~f~~ 39 (157)
.|..|||..|..|+-|.|
T Consensus 149 PFVcKvLe~~~~S~iFkP 166 (229)
T 4gmj_A 149 PFVAKVLESSIRSVVFRP 166 (229)
T ss_dssp HHHHHHHHTTTTCTTTST
T ss_pred hhHHHHHHhcccCCcCCC
Confidence 689999999999999966
No 51
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=21.62 E-value=69 Score=23.54 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=19.0
Q ss_pred ccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHH
Q 031595 106 GITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLAN 142 (157)
Q Consensus 106 GdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~ 142 (157)
|.||.-| |.+||..|.=|..|.|-- .--||..|.+
T Consensus 52 g~gG~Fe-V~vdg~lVwsRk~gGFPd-~keLkq~VRd 86 (107)
T 3dex_A 52 GTGGVFV-VRVDDEVVWDRREQGFPE-PTAVKRLVRD 86 (107)
T ss_dssp ESSSCEE-EEETTEEEEEHHHHCSCC-HHHHHHHHHH
T ss_pred CCCceEE-EEECCEEEEEecCCCCCC-HHHHHHHHHH
Confidence 4556655 456666666555554444 4445555544
No 52
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=21.59 E-value=1.8e+02 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=23.7
Q ss_pred ccceEEEEec---CCeEEEEEeeccCcchhhHHHHHHH
Q 031595 108 TGVAELAELD---GPFVKIRLRGRFWHKRSTVIARLAN 142 (157)
Q Consensus 108 GGdVELVeID---GpvVkVrL~GaC~~s~mTvk~gVe~ 142 (157)
..||||+.++ ++.+.+-++|- ..-|++.|+.
T Consensus 28 AAnVelv~~e~~~~G~~~vii~GD----VsaV~aAvea 61 (125)
T 2a10_A 28 AGRITIVGYIRAGSARFTLNIRGD----VQEVKTAMAA 61 (125)
T ss_dssp HSSCEEEEEEEEETTEEEEEEEEC----HHHHHHHHHH
T ss_pred hcCcEEEEEEecCCCEEEEEEEEc----HHHHHHHHHH
Confidence 5789999998 78899999994 4556665554
No 53
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=21.50 E-value=82 Score=23.80 Aligned_cols=43 Identities=5% Similarity=0.104 Sum_probs=30.0
Q ss_pred ccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCc
Q 031595 108 TGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPV 150 (157)
Q Consensus 108 GGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPE 150 (157)
|+++.+++.+|.+..+.+-|.|....=.....+.++|.-.+|+
T Consensus 104 ~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~ 146 (276)
T 4ehu_A 104 DAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSE 146 (276)
T ss_dssp CEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGG
T ss_pred CceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHhccChhh
Confidence 4566666656777778899999885555566677777665554
No 54
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=21.44 E-value=62 Score=27.54 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.4
Q ss_pred ccchHHHHHHHHHHHHHHHhhhc
Q 031595 80 DLTEDNVRQVIADARGELAQLFD 102 (157)
Q Consensus 80 eLteENVE~vLdeiRP~L~a~fD 102 (157)
.++|++|+++|+++|-.|.+ +|
T Consensus 21 ~~~e~~~~~~l~e~~~~Ll~-ad 42 (433)
T 2xxa_A 21 RLTEDNVKDTLREVRMALLE-AD 42 (433)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-HT
T ss_pred CCCHHHHHHHHHHHHHHHHH-cC
Confidence 47999999999999999876 66
No 55
>2lll_A Lamin-B2; immunoglobulin-like fold, structural protein, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=21.39 E-value=66 Score=24.20 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=17.3
Q ss_pred ccceEEEEec--CCeEEEEEee
Q 031595 108 TGVAELAELD--GPFVKIRLRG 127 (157)
Q Consensus 108 GGdVELVeID--GpvVkVrL~G 127 (157)
.|+|++.|+| |.+|+|+=+|
T Consensus 21 kG~V~I~E~d~~GefV~L~N~s 42 (139)
T 2lll_A 21 SGSVSIEEIDLEGKFVQLKNNS 42 (139)
T ss_dssp TTSEEEEEECSSCSEEEEEECS
T ss_pred CCCEEEEEECCCCCEEEEEECC
Confidence 5999999998 9999998665
No 56
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=21.39 E-value=1.4e+02 Score=24.14 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=34.4
Q ss_pred HHHHHhhc-CccccCccccccccccccccCCCcceeeeeccccccccccCCCCCCCcccchHHHHHHHHHHHH
Q 031595 24 LRKILSTC-NHSKAFNKQTTHCRQKKLSRRKPILLSTSIDRGYLTRTAAGGVPPPPLDLTEDNVRQVIADARG 95 (157)
Q Consensus 24 l~~i~~~c-~~s~~f~~~~~~~~~~~~~~~~~~~~~t~~~r~~~~~~~~~~~~~~~LeLteENVE~vLdeiRP 95 (157)
++++...+ .+....--|+.|.+....+. . ..++.+ .-........+-+||+|+|+++.++..-
T Consensus 85 ~~~~~~~vh~~g~~i~~QL~h~Gr~~~~~-~-~~~~pS-------~~~~~~~~~~p~~mt~~eI~~~i~~~~~ 148 (338)
T 1z41_A 85 FAKLTEQVKEQGSKIGIQLAHAGRKAELE-G-DIFAPS-------AIAFDEQSATPVEMSAEKVKETVQEFKQ 148 (338)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCGGGCCCS-S-CCEESS-------SCCSSTTSCCCEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEecCCCcccCCC-C-CCcCCC-------CCCCCCCCCCCccCCHHHHHHHHHHHHH
Confidence 67776555 33334456899987655432 1 112110 0000111235678999999998887643
No 57
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=21.08 E-value=68 Score=28.44 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=25.9
Q ss_pred ceEEEEecCCeEEEEEeeccCc-chhhHHHHHHHHHHhhC
Q 031595 110 VAELAELDGPFVKIRLRGRFWH-KRSTVIARLANYLKQRI 148 (157)
Q Consensus 110 dVELVeIDGpvVkVrL~GaC~~-s~mTvk~gVe~~LKe~I 148 (157)
.|.=||.+||.|.|=.+-+=.- ....+-..+...||+||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (640)
T 2xr1_A 26 TITDVEFEGPQLVLYTEEPRKFADDGNIIRNLAKELRTRI 65 (640)
T ss_dssp CCCCEEEETTEEEEEESCHHHHHHCTHHHHHHHHHHTSCE
T ss_pred eEEEEEEECCEEEEEeCCHHHhccccHHHHHHHHHhhceE
Confidence 3444777899999877655432 23456666778888776
No 58
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=20.69 E-value=84 Score=19.87 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=27.0
Q ss_pred ecCCeEEEEEeeccCc-chhhHHHHHHHHHHhhC-CcCcCCC
Q 031595 116 LDGPFVKIRLRGRFWH-KRSTVIARLANYLKQRI-PVSPLPC 155 (157)
Q Consensus 116 IDGpvVkVrL~GaC~~-s~mTvk~gVe~~LKe~I-PEI~~~~ 155 (157)
..++.+.|++.|.... +...++..+...+.+.- ..+.+.+
T Consensus 10 ~~~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDl 51 (110)
T 1sbo_A 10 EQDDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDL 51 (110)
T ss_dssp ECSSEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEEC
T ss_pred EeCCEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3588899999999665 45667777777776543 2344433
No 59
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=20.65 E-value=40 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=16.2
Q ss_pred CCCCCcccchHHHHHHHHHHHHHHH
Q 031595 74 VPPPPLDLTEDNVRQVIADARGELA 98 (157)
Q Consensus 74 ~~~~~LeLteENVE~vLdeiRP~L~ 98 (157)
+..+...+++|+++++|+.++.|.+
T Consensus 88 ~s~e~~~~~deeL~~IL~~l~ky~~ 112 (113)
T 4ayb_F 88 IMDSNRTYTSEDIQKIIDIIRKYIK 112 (113)
T ss_dssp TTTCCCCCCCTHHHHHHHHC-----
T ss_pred HhhccCCCCHHHHHHHHHHHHHHhc
Confidence 3345566899999999999999875
No 60
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=20.59 E-value=77 Score=22.13 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=31.5
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhh
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQR 147 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~ 147 (157)
.||+..++|. .-|..|-|. ...++.|.+.++|.=.. ......+|++.
T Consensus 29 FR~~v~~~A~-~lgL~G~V~--N~~dG~Vei~~eG~~~~-----i~~f~~~l~~g 75 (101)
T 2bjd_A 29 FRKFVQIHAI-RLGIKGYAK--NLPDGSVEVVAEGYEEA-----LSKLLERIKQG 75 (101)
T ss_dssp HHHHHHHHHH-HTTCEEEEE--ECTTSCEEEEEEEEHHH-----HHHHHHHHTTC
T ss_pred HHHHHHHHHH-HcCCeEEEE--ECCCCcEEEEEEeCHHH-----HHHHHHHHHhC
Confidence 4888888776 567888765 45577899999996332 23344555554
No 61
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=20.57 E-value=78 Score=21.78 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCC
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IP 149 (157)
.||+..++|+ .-|..|-|. ...++.|.+.++|.=.. .....++|++.-|
T Consensus 23 FR~~v~~~A~-~lgL~G~V~--N~~dG~Vei~~eG~~~~-----v~~f~~~l~~~~p 71 (99)
T 2vh7_A 23 FRKHTQAEGK-KLGLVGWVQ--NTDRGTVQGQLQGPISK-----VRHMQEWLETRGS 71 (99)
T ss_dssp HHHHHHHHHH-HTTCEEEEE--ECTTSCEEEEEEEEHHH-----HHHHHHHHHHTCS
T ss_pred hHHHHHHHHH-HcCCcEEEE--ECCCCCEEEEEEcCHHH-----HHHHHHHHHhcCC
Confidence 4888888776 567888765 55678899999996322 3344556665544
No 62
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=20.51 E-value=69 Score=24.23 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.4
Q ss_pred ccceEEEEec--CCeEEEEEeec
Q 031595 108 TGVAELAELD--GPFVKIRLRGR 128 (157)
Q Consensus 108 GGdVELVeID--GpvVkVrL~Ga 128 (157)
.|+|++.|+| |.+|+|+=+|.
T Consensus 25 kG~V~I~Evd~~GkfV~L~N~s~ 47 (144)
T 3jt0_A 25 TGNVCIEEIDVDGKFIRLKNTSE 47 (144)
T ss_dssp CCCEEEEEECTTSSEEEEEECSS
T ss_pred CCCEEEEEECCCCCEEEEEECCC
Confidence 4899999998 89999976654
No 63
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=20.27 E-value=1.8e+02 Score=20.39 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCCcCcCCCCC
Q 031595 82 TEDNVRQVIADARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIPVSPLPCRT 157 (157)
Q Consensus 82 teENVE~vLdeiRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IPEI~~~~~~ 157 (157)
-++..+++|+.|+--|.+ -|+++ +.+||+++-=+. |.-...+....++.+|+-..|.||
T Consensus 37 ~~~Q~~~~l~nl~~~L~~-------aG~~~------~~Vvk~tvyl~d----~~df~~~n~v~~~~f~~~~~Part 95 (124)
T 3gtz_A 37 AFEQTANTLAQIDAVLEK-------QGSSK------SRILDATIFLSD----KADFAAMNKAWDAWVVAGHAPVRC 95 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH-------TTCCG------GGEEEEEEEESC----GGGHHHHHHHHHHHSCTTCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCCH------HHEEEEEEEECC----HHHHHHHHHHHHHHhCCCCCCcEE
Confidence 467899999999999986 23332 236666553332 223445667778888866667664
No 64
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=20.01 E-value=74 Score=22.08 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHhhhccccccccceEEEEecCCeEEEEEeeccCcchhhHHHHHHHHHHhhCC
Q 031595 93 ARGELAQLFDTSVGITGVAELAELDGPFVKIRLRGRFWHKRSTVIARLANYLKQRIP 149 (157)
Q Consensus 93 iRP~L~a~fD~sVGdGGdVELVeIDGpvVkVrL~GaC~~s~mTvk~gVe~~LKe~IP 149 (157)
.||+..++|. .-|..|-|. ...++.|.+.++|.=.. ......+|++.-|
T Consensus 26 FR~~v~~~A~-~lgL~G~V~--N~~dG~Vei~~eG~~~~-----l~~f~~~l~~~gP 74 (102)
T 1urr_A 26 FRKHTSHEAK-RLGVRGWCM--NTRDGTVKGQLEAPMMN-----LMEMKHWLENNRI 74 (102)
T ss_dssp HHHHHHHHHH-HHTCEEEEE--ECTTSCEEEEEEECHHH-----HHHHHHHHHHCCS
T ss_pred hhHHHHHHHH-HhCCcEEEE--ECCCCCEEEEEEcCHHH-----HHHHHHHHHhcCC
Confidence 4888887776 467888765 55678899999996322 3344556665444
Done!