BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031596
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+ GA
Sbjct: 21 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGA 79
Query: 91 PSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 150
P GVSV++N++Y+ A A VL+ GK +A SV+L K TGK++AQGRHTK+
Sbjct: 80 P--GVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKH 137
Query: 151 L 151
L
Sbjct: 138 L 138
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 5/122 (4%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+ GA
Sbjct: 26 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGA 84
Query: 91 PSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 150
P GVSV++N++Y+ A A VL+ GK +A SV+L K TGK++AQGRHTK+
Sbjct: 85 P--GVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHTKH 142
Query: 151 LA 152
L
Sbjct: 143 LG 144
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 31 KFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-- 88
+ FER ++ + + + PG+VIC KV NA +HGG TATLVD + + A+
Sbjct: 19 RNFER-VLGKITLVSAAPGKVICEXKVEEEHTNAIGTLHGGLTATLVDNISTXALLCTER 77
Query: 89 GAPSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 148
GAP GVSV+ N++Y A A VL+ GK +A SV+L K TGK++AQGRHT
Sbjct: 78 GAP--GVSVDXNITYXSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNKATGKLIAQGRHT 135
Query: 149 KYL 151
K+L
Sbjct: 136 KHL 138
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
F+R +++ + + + P ++IC KV + N +HGG TATLVD + + A+ GA
Sbjct: 21 FDR-VLEKVTLVSAAPEKLICEXKVEEQHTNKLGTLHGGLTATLVDSISTXALXCTERGA 79
Query: 91 PSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 150
P GVSV+ N++Y A A +L+ GK +A SV+L K TGK++AQGRHTK+
Sbjct: 80 P--GVSVDXNITYXSPAKIGEEIVITAHILKQGKTLAFASVDLTNKTTGKLIAQGRHTKH 137
Query: 151 LA 152
L
Sbjct: 138 LG 139
>pdb|4I82|A Chain A, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
pdb|4I82|B Chain B, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
Length = 137
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPS 92
FE + ++ +R G V+ + KV LN HGG TL D + + ++G
Sbjct: 15 FENYEIEKMR-----DGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLD- 68
Query: 93 VGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152
GV+++ +++YL A + + G+ V+ V++ ++ G+ V + T ++
Sbjct: 69 -GVTLQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQE-GRNVCKATFTMFVT 126
>pdb|1ZKI|A Chain A, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
pdb|1ZKI|B Chain B, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
Length = 133
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 49 GRVICSMKVP--PRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
G + +++P L N G HGGA +L D+ G A + G V++E ++Y+
Sbjct: 28 GDGVAEVRLPXAAHLRNRGGVXHGGALFSLXDVTXGLACSSSHGFDRQSVTLECKINYI- 86
Query: 106 AAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 148
A A+VL G+ VV E+R+ D K+VA+G+ T
Sbjct: 87 RAVADGEVRCVARVLHAGRRSLVVEAEVRQGD--KLVAKGQGT 127
>pdb|3E1E|A Chain A, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|B Chain B, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|C Chain C, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|D Chain D, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|E Chain E, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|F Chain F, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|G Chain G, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|H Chain H, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
Length = 141
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVE 98
G R+D PGRV M L F+H G +T++D A F++ V +VE
Sbjct: 25 GARIDTLLPGRVELCMPYDRALTQQHGFLHAGIVSTVLDSACGYAAFSLMEEEAAVLTVE 84
Query: 99 INVSYLDAA 107
V++L+ A
Sbjct: 85 FKVNFLNPA 93
>pdb|4AE8|A Chain A, Crystal Structure Of Human Them4
pdb|4AE8|B Chain B, Crystal Structure Of Human Them4
pdb|4AE8|C Chain C, Crystal Structure Of Human Them4
pdb|4AE8|D Chain D, Crystal Structure Of Human Them4
Length = 211
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 104 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 155
>pdb|4GAH|A Chain A, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
pdb|4GAH|B Chain B, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
Length = 209
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 94 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 145
>pdb|3NWZ|A Chain A, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|B Chain B, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|C Chain C, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|D Chain D, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
Length = 176
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
E GR + + P + N N +HGG TATL+D G + V+ E+N+ Y+
Sbjct: 60 EDGRFEVRLPIGPLVNNPLNXVHGGITATLLDTAXGQXVNRQLPDGQSAVTSELNIHYVK 119
Query: 106 AAFXXXXXXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQG 145
A ++ GK VV ++ D G+ VA G
Sbjct: 120 PG-XGTYLRAVASIVHQGKQRIVVEGKV-YTDQGETVAXG 157
>pdb|3DKZ|A Chain A, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c.
pdb|3DKZ|B Chain B, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c
Length = 142
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 56 KVPPR--LLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFXXXX 112
++P R L+N+ +HGG +++D AAI P VGV +++ N S+
Sbjct: 34 RLPARADLVNSRGDIHGGTLXSVLDFTLGAAI-RGDTPEVGVATIDXNTSFXSPG--RGD 90
Query: 113 XXXXAKVLRVGKAVAVVSVELRKKDTGKIVAQ 144
+ LR G ++A E+R G++VA+
Sbjct: 91 LVIETRCLRRGASIAFCEGEIRDS-AGELVAK 121
>pdb|1VH5|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH5|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|C Chain C, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|D Chain D, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|E Chain E, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|F Chain F, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|G Chain G, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|H Chain H, Crystal Structure Of A Putative Thioesterase
Length = 148
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAA 107
+M V R +HGGA+ L + +GS A + T G V V +EIN +++ +A
Sbjct: 41 TMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSA 95
>pdb|1SBK|A Chain A, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|B Chain B, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|C Chain C, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|D Chain D, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29
Length = 144
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 67 FMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAA 107
+HGGA+ L + +GS A + T G V V +EIN +++ +A
Sbjct: 52 LLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSA 93
>pdb|3E29|A Chain A, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|B Chain B, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|C Chain C, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a.
pdb|3E29|D Chain D, X-Ray Structure Of The Protein Q7we92_borbr From
Thioesterase Superfamily. Northeast Structural Genomics
Consortium Target Bor214a
Length = 144
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 69 HGGATATLVDLVGSAAI-FTVGAPSVGVSVEINVSYLDAAFXXXXXXXXAKVLRVGKAVA 127
HGG ATLVD G A+ G P + + +V Y A +V+ GK A
Sbjct: 54 HGGILATLVDAAGDYAVALKTGHPV--PTXDXHVDYHRVA-TPGDLRAEGQVIHFGKRFA 110
Query: 128 VVSVELRKKDTGKIVAQGR 146
+ D G +VA GR
Sbjct: 111 TAHARVLDXD-GNLVASGR 128
>pdb|3HYK|A Chain A, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|B Chain B, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
pdb|3HYK|C Chain C, 2.31 Angstrom Resolution Crystal Structure Of A
Holo-(Acyl-Carrier- Protein) Synthase From Bacillus
Anthracis Str. Ames In Complex With Coa (3',5'-Adp)
Length = 122
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 122 VGKAVAVVSVELRKKDTGK--IVAQGRHTKYLAIS 154
+GK V+ + +E+R D GK ++ H +L+IS
Sbjct: 71 IGKEVSFLDIEVRNDDRGKPILITSTEHIVHLSIS 105
>pdb|3E8P|A Chain A, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|B Chain B, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|C Chain C, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|D Chain D, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246
Length = 164
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 67 FMHGGATATLVDLVGSAAIF 86
+HGG TAT++D+VG F
Sbjct: 67 ILHGGVTATVLDVVGGLTAF 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,577,733
Number of Sequences: 62578
Number of extensions: 114564
Number of successful extensions: 287
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 20
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)