Query 031596
Match_columns 157
No_of_seqs 136 out of 1191
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 8.6E-27 1.9E-31 161.5 16.3 124 25-152 12-136 (136)
2 PRK10254 thioesterase; Provisi 100.0 1.9E-26 4.2E-31 159.7 17.2 121 28-152 15-136 (137)
3 PRK11688 hypothetical protein; 99.9 2E-25 4.3E-30 157.9 16.7 134 1-151 4-153 (154)
4 PLN02322 acyl-CoA thioesterase 99.9 3.1E-25 6.8E-30 155.9 17.0 114 39-152 16-134 (154)
5 TIGR02286 PaaD phenylacetic ac 99.9 8.9E-25 1.9E-29 147.3 16.3 111 39-152 4-114 (114)
6 TIGR00369 unchar_dom_1 unchara 99.9 9.4E-25 2E-29 147.7 15.7 112 38-151 5-117 (117)
7 KOG3328 HGG motif-containing t 99.9 1.8E-24 3.8E-29 148.3 13.2 119 39-157 27-145 (148)
8 COG2050 PaaI HGG motif-contain 99.9 7.1E-24 1.5E-28 147.9 16.2 116 39-155 24-140 (141)
9 cd03443 PaaI_thioesterase PaaI 99.9 3.3E-20 7.1E-25 123.9 16.4 110 39-150 2-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.8 1E-19 2.2E-24 126.5 15.0 111 38-153 11-138 (138)
11 cd03442 BFIT_BACH Brown fat-in 99.7 2.4E-16 5.1E-21 106.6 15.8 107 46-153 3-114 (123)
12 PF14539 DUF4442: Domain of un 99.7 1.4E-16 3E-21 109.9 13.1 112 37-151 17-132 (132)
13 PRK10694 acyl-CoA esterase; Pr 99.7 1.1E-15 2.3E-20 105.6 14.9 107 47-154 8-122 (133)
14 PF03061 4HBT: Thioesterase su 99.7 1.2E-15 2.6E-20 95.4 11.5 78 65-143 1-79 (79)
15 COG1607 Acyl-CoA hydrolase [Li 99.7 5.2E-15 1.1E-19 103.9 15.2 106 48-154 11-121 (157)
16 cd00556 Thioesterase_II Thioes 99.6 1.9E-14 4E-19 93.9 10.7 85 65-150 14-98 (99)
17 PRK04424 fatty acid biosynthes 99.5 8.2E-13 1.8E-17 96.0 15.9 104 42-151 76-181 (185)
18 PF09500 YiiD_Cterm: Putative 99.5 7E-13 1.5E-17 92.2 13.5 111 38-153 17-144 (144)
19 cd00586 4HBT 4-hydroxybenzoyl- 99.5 1.8E-12 3.9E-17 84.8 14.2 99 53-152 3-109 (110)
20 PLN02647 acyl-CoA thioesterase 99.3 6.3E-11 1.4E-15 95.9 15.5 111 44-154 81-211 (437)
21 KOG4781 Uncharacterized conser 99.3 1.3E-11 2.7E-16 90.7 9.7 92 43-134 119-210 (237)
22 PRK10800 acyl-CoA thioesterase 99.3 3.6E-10 7.7E-15 77.4 15.9 103 52-155 4-114 (130)
23 PLN02647 acyl-CoA thioesterase 99.3 1.5E-10 3.2E-15 93.7 15.5 111 43-154 283-403 (437)
24 cd03440 hot_dog The hotdog fol 99.3 7.1E-10 1.5E-14 69.0 14.2 96 53-149 3-99 (100)
25 TIGR02799 thio_ybgC tol-pal sy 99.3 4.2E-10 9.1E-15 76.4 13.8 100 53-154 3-111 (126)
26 COG0824 FcbC Predicted thioest 99.2 2.5E-09 5.3E-14 74.2 14.9 104 50-155 5-116 (137)
27 TIGR00051 acyl-CoA thioester h 99.1 4.1E-09 9E-14 70.3 13.5 98 55-153 2-107 (117)
28 cd03445 Thioesterase_II_repeat 99.1 2.8E-09 6.2E-14 69.3 11.0 80 64-150 14-93 (94)
29 PF13279 4HBT_2: Thioesterase- 99.0 1.8E-08 3.9E-13 67.8 13.8 98 57-155 1-107 (121)
30 PF13622 4HBT_3: Thioesterase- 99.0 1.1E-08 2.3E-13 77.6 12.5 83 65-154 9-91 (255)
31 PRK07531 bifunctional 3-hydrox 98.9 5E-08 1.1E-12 80.8 15.2 105 50-155 345-456 (495)
32 cd03449 R_hydratase (R)-hydrat 98.9 7.1E-08 1.5E-12 65.4 12.5 82 65-151 45-128 (128)
33 cd01288 FabZ FabZ is a 17kD be 98.8 1.3E-06 2.9E-11 59.4 15.9 107 43-151 13-130 (131)
34 PRK00006 fabZ (3R)-hydroxymyri 98.8 2.4E-06 5.2E-11 59.7 16.5 109 43-153 28-146 (147)
35 COG5496 Predicted thioesterase 98.7 1.4E-06 3E-11 58.7 13.7 91 65-157 28-119 (130)
36 COG4109 Predicted transcriptio 98.7 2E-07 4.4E-12 72.9 10.0 96 54-152 336-431 (432)
37 TIGR00189 tesB acyl-CoA thioes 98.6 6.3E-07 1.4E-11 68.7 10.2 78 66-150 21-98 (271)
38 cd03455 SAV4209 SAV4209 is a S 98.5 3E-06 6.5E-11 57.4 11.7 78 66-149 44-122 (123)
39 cd03441 R_hydratase_like (R)-h 98.5 3.2E-06 7E-11 57.0 11.0 81 64-148 41-125 (127)
40 cd03447 FAS_MaoC FAS_MaoC, the 98.5 9.4E-06 2E-10 55.4 12.2 82 65-150 42-124 (126)
41 cd03451 FkbR2 FkbR2 is a Strep 98.5 3.1E-06 6.8E-11 58.8 10.0 86 65-154 53-145 (146)
42 PRK10526 acyl-CoA thioesterase 98.4 7.3E-06 1.6E-10 63.5 11.1 82 64-152 30-111 (286)
43 cd03453 SAV4209_like SAV4209_l 98.3 1.8E-05 3.9E-10 53.9 11.5 78 66-149 45-126 (127)
44 KOG2763 Acyl-CoA thioesterase 98.3 7.1E-06 1.5E-10 64.7 10.5 94 40-134 189-283 (357)
45 TIGR01750 fabZ beta-hydroxyacy 98.3 7.1E-05 1.5E-09 51.7 14.6 106 43-150 21-139 (140)
46 cd01289 FabA_like Domain of un 98.3 0.00021 4.6E-09 49.5 16.5 108 43-152 19-137 (138)
47 PLN02370 acyl-ACP thioesterase 98.3 0.0001 2.2E-09 59.9 16.7 106 50-155 139-258 (419)
48 PRK13188 bifunctional UDP-3-O- 98.3 0.00016 3.6E-09 59.3 17.9 110 44-155 343-463 (464)
49 cd00493 FabA_FabZ FabA/Z, beta 98.3 0.00019 4.1E-09 48.6 15.7 104 43-148 12-128 (131)
50 cd03446 MaoC_like MoaC_like 98.3 1.4E-05 3E-10 55.1 9.9 81 66-150 51-139 (140)
51 cd03452 MaoC_C MaoC_C The C-t 98.2 2.4E-05 5.2E-10 54.4 10.5 84 66-154 51-141 (142)
52 PRK13692 (3R)-hydroxyacyl-ACP 98.2 2.5E-05 5.5E-10 55.5 10.6 60 94-154 84-147 (159)
53 PLN02868 acyl-CoA thioesterase 98.2 1.1E-05 2.3E-10 65.6 9.7 100 43-152 138-237 (413)
54 cd03454 YdeM YdeM is a Bacillu 98.2 2.9E-05 6.2E-10 53.6 10.3 82 67-151 50-139 (140)
55 PRK13691 (3R)-hydroxyacyl-ACP 98.1 0.00013 2.7E-09 52.3 12.6 59 95-154 85-147 (166)
56 PRK08190 bifunctional enoyl-Co 98.1 0.0001 2.2E-09 60.9 13.0 85 65-154 58-144 (466)
57 PF07977 FabA: FabA-like domai 98.0 0.001 2.2E-08 45.9 15.0 94 51-146 27-138 (138)
58 cd03444 Thioesterase_II_repeat 98.0 0.00031 6.8E-09 46.3 11.8 84 65-149 14-102 (104)
59 PF01643 Acyl-ACP_TE: Acyl-ACP 98.0 0.00077 1.7E-08 51.6 14.9 103 52-155 5-122 (261)
60 COG0764 FabA 3-hydroxymyristoy 97.7 0.007 1.5E-07 42.4 14.9 57 95-154 89-146 (147)
61 cd01287 FabA FabA, beta-hydrox 97.7 0.0078 1.7E-07 42.3 15.5 100 50-151 28-146 (150)
62 cd03450 NodN NodN (nodulation 97.7 0.0011 2.4E-08 46.6 10.8 86 66-151 57-147 (149)
63 cd03448 HDE_HSD HDE_HSD The R 97.6 0.0018 3.8E-08 43.9 10.2 74 65-146 44-117 (122)
64 KOG3016 Acyl-CoA thioesterase 97.6 0.0013 2.7E-08 50.6 10.1 107 42-156 15-121 (294)
65 TIGR00189 tesB acyl-CoA thioes 97.6 0.0023 4.9E-08 49.0 11.7 85 66-151 181-270 (271)
66 PRK13693 (3R)-hydroxyacyl-ACP 97.5 0.0058 1.3E-07 42.5 11.9 80 65-150 54-140 (142)
67 COG2030 MaoC Acyl dehydratase 97.5 0.0036 7.8E-08 44.4 11.0 84 67-154 69-157 (159)
68 PF13622 4HBT_3: Thioesterase- 97.4 0.0017 3.7E-08 49.0 9.3 79 72-151 174-255 (255)
69 PF01575 MaoC_dehydratas: MaoC 97.4 0.0013 2.7E-08 44.4 7.7 67 65-134 50-116 (122)
70 TIGR01749 fabA beta-hydroxyacy 97.2 0.04 8.6E-07 39.5 16.0 97 50-148 51-158 (169)
71 PRK10526 acyl-CoA thioesterase 97.2 0.013 2.8E-07 45.5 12.0 87 66-153 192-284 (286)
72 PF13452 MaoC_dehydrat_N: N-te 97.2 0.0024 5.3E-08 43.4 7.1 52 92-144 73-131 (132)
73 COG1946 TesB Acyl-CoA thioeste 97.1 0.0016 3.5E-08 50.1 6.5 84 64-154 30-113 (289)
74 TIGR02278 PaaN-DH phenylacetic 97.1 0.0037 8E-08 53.9 9.1 94 53-151 552-661 (663)
75 PRK05174 3-hydroxydecanoyl-(ac 97.1 0.064 1.4E-06 38.6 16.7 97 50-148 54-161 (172)
76 KOG2763 Acyl-CoA thioesterase 97.0 0.014 3.1E-07 46.4 11.0 99 57-155 15-128 (357)
77 COG1946 TesB Acyl-CoA thioeste 97.0 0.0066 1.4E-07 46.8 8.9 89 65-154 191-285 (289)
78 PLN02864 enoyl-CoA hydratase 96.8 0.031 6.8E-07 43.9 11.5 90 53-150 206-304 (310)
79 PF02551 Acyl_CoA_thio: Acyl-C 96.8 0.016 3.6E-07 39.6 8.2 81 67-147 45-128 (131)
80 PRK11563 bifunctional aldehyde 96.7 0.01 2.3E-07 51.3 8.8 94 53-151 564-673 (675)
81 PF03756 AfsA: A-factor biosyn 96.6 0.11 2.4E-06 35.3 14.4 101 48-150 19-131 (132)
82 PLN02868 acyl-CoA thioesterase 96.5 0.024 5.3E-07 46.1 9.3 82 66-148 325-410 (413)
83 PLN02864 enoyl-CoA hydratase 96.1 0.064 1.4E-06 42.2 9.1 61 93-153 93-157 (310)
84 PF01643 Acyl-ACP_TE: Acyl-ACP 96.0 0.14 2.9E-06 39.2 10.3 97 48-150 163-260 (261)
85 KOG3016 Acyl-CoA thioesterase 95.0 0.23 5E-06 38.4 8.4 80 65-145 207-291 (294)
86 PLN02370 acyl-ACP thioesterase 94.0 1.1 2.5E-05 36.7 10.7 97 50-152 301-403 (419)
87 PF14765 PS-DH: Polyketide syn 93.9 2.2 4.7E-05 32.5 12.2 98 49-151 182-287 (295)
88 COG3884 FatA Acyl-ACP thioeste 93.0 0.24 5.1E-06 37.2 4.9 72 50-126 152-223 (250)
89 COG3884 FatA Acyl-ACP thioeste 91.8 2.9 6.2E-05 31.6 9.2 61 93-155 55-115 (250)
90 TIGR02813 omega_3_PfaA polyket 85.6 8.6 0.00019 38.8 10.1 53 100-153 2522-2574(2582)
91 PF10648 Gmad2: Immunoglobulin 68.4 18 0.00039 22.9 4.8 45 100-148 2-49 (88)
92 KOG1206 Peroxisomal multifunct 60.6 4.8 0.0001 30.5 1.2 47 65-117 191-237 (272)
93 COG3777 Uncharacterized conser 57.5 45 0.00098 25.6 5.9 87 50-148 185-272 (273)
94 PF11684 DUF3280: Protein of u 50.1 77 0.0017 22.0 5.8 41 109-149 79-119 (140)
95 COG4706 Predicted 3-hydroxylac 48.0 78 0.0017 22.3 5.4 99 42-143 27-138 (161)
96 TIGR00074 hypC_hupF hydrogenas 47.2 44 0.00095 20.6 3.8 26 93-118 22-47 (76)
97 PF07862 Nif11: Nitrogen fixat 45.3 16 0.00034 20.1 1.5 14 1-14 1-14 (49)
98 COG3510 CmcI Cephalosporin hyd 41.2 14 0.0003 27.4 1.0 51 53-108 64-114 (237)
99 PF01835 A2M_N: MG2 domain; I 40.5 92 0.002 19.5 6.0 42 105-147 8-55 (99)
100 TIGR03738 PRTRC_C PRTRC system 39.0 80 0.0017 19.0 3.8 14 1-14 23-36 (66)
101 PF08671 SinI: Anti-repressor 39.0 24 0.00053 17.7 1.4 12 1-12 17-28 (30)
102 PF04775 Bile_Hydr_Trans: Acyl 38.5 1.2E+02 0.0027 20.3 5.9 42 97-141 5-46 (126)
103 TIGR03786 strep_pil_rpt strept 36.5 93 0.002 18.4 4.5 25 123-147 29-53 (64)
104 PF15490 Ten1_2: Telomere-capp 34.4 1.5E+02 0.0032 20.0 7.2 44 95-138 51-97 (118)
105 PF11906 DUF3426: Protein of u 34.1 1.5E+02 0.0033 20.1 8.7 48 99-147 55-106 (149)
106 cd04316 ND_PkAspRS_like_N ND_P 33.5 1.3E+02 0.0027 19.4 4.6 35 105-140 7-41 (108)
107 PF11355 DUF3157: Protein of u 31.5 2.2E+02 0.0047 21.1 6.9 51 99-150 100-153 (199)
108 PF04052 TolB_N: TolB amino-te 28.8 1.6E+02 0.0034 18.7 4.7 40 100-140 64-103 (105)
109 cd04317 EcAspRS_like_N EcAspRS 28.8 1.3E+02 0.0029 20.1 4.3 38 103-141 7-44 (135)
110 CHL00139 rpl18 ribosomal prote 28.4 1.1E+02 0.0024 20.2 3.6 25 124-148 22-46 (109)
111 PF12988 DUF3872: Domain of un 28.1 58 0.0013 22.5 2.3 29 95-124 33-61 (137)
112 PF11141 DUF2914: Protein of u 27.8 1.4E+02 0.003 17.7 5.5 36 112-148 29-64 (66)
113 PF08670 MEKHLA: MEKHLA domain 27.4 1.3E+02 0.0027 21.2 3.9 33 114-146 106-140 (148)
114 PF14230 DUF4333: Domain of un 27.4 1.5E+02 0.0034 18.1 5.0 31 105-139 50-80 (80)
115 PF14454 Prok_Ub: Prokaryotic 24.8 1.4E+02 0.0031 17.8 3.3 14 1-14 24-37 (65)
116 KOG4680 Uncharacterized conser 24.3 2.6E+02 0.0055 19.6 6.9 47 105-152 97-145 (153)
117 PF10989 DUF2808: Protein of u 23.9 2.5E+02 0.0054 19.3 7.3 39 96-134 88-128 (146)
118 PRK10409 hydrogenase assembly 23.4 1.7E+02 0.0036 18.7 3.6 25 93-117 22-52 (90)
119 smart00634 BID_1 Bacterial Ig- 23.2 1.4E+02 0.003 18.5 3.3 9 136-144 59-67 (92)
120 PF12508 DUF3714: Protein of u 22.9 3E+02 0.0066 20.3 5.4 30 110-140 100-129 (200)
121 PF11079 YqhG: Bacterial prote 22.1 78 0.0017 24.4 2.2 14 1-14 1-14 (260)
122 PF01336 tRNA_anti-codon: OB-f 22.0 1.5E+02 0.0033 16.9 3.2 27 114-141 2-29 (75)
123 PF11569 Homez: Homeodomain le 21.1 67 0.0014 18.6 1.3 14 1-14 37-50 (56)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.95 E-value=8.6e-27 Score=161.47 Aligned_cols=124 Identities=22% Similarity=0.308 Sum_probs=108.2
Q ss_pred cccCccchhhceeecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEE
Q 031596 25 MEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSY 103 (157)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f 103 (157)
++.+.+..|..+ +|+++.++++|++++++++++.|+|+.|.+|||++++|+|.+++.+..... .+...+|++++++|
T Consensus 12 ~~~~~~~~~~~~--LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~inf 89 (136)
T PRK10293 12 LNAMGEGNMVGL--LDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANH 89 (136)
T ss_pred HhhhccccHHHh--cCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEE
Confidence 334444334444 499999999999999999999999999999999999999999887765543 34567999999999
Q ss_pred eecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 104 LDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 104 ~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
++|++.| .+++++++++.||+..+++++++ |++|++++.++++++++
T Consensus 90 l~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~-d~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 90 VRSAREG-RVRGVCKPLHLGSRHQVWQIEIF-DEKGRLCCSSRLTTAIL 136 (136)
T ss_pred ecccCCc-eEEEEEEEEecCCCEEEEEEEEE-eCCCCEEEEEEEEEEEC
Confidence 9999988 79999999999999999999999 68999999999999874
No 2
>PRK10254 thioesterase; Provisional
Probab=99.95 E-value=1.9e-26 Score=159.70 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=107.7
Q ss_pred CccchhhceeecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhh-CCCceeEEEEEEEEEeec
Q 031596 28 MPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-GAPSVGVSVEINVSYLDA 106 (157)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~-~~~~~~vt~~l~i~f~~p 106 (157)
.+...|..+ +|+++.++++|++++++++++.++|+.|.+|||++++|+|.+++.++... ..+...+|++++++|++|
T Consensus 15 ~~~~~~~~~--LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp 92 (137)
T PRK10254 15 TSDNTMVAH--LGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRP 92 (137)
T ss_pred hcccchHHh--hCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEecc
Confidence 344334443 49999999999999999999999999999999999999999998887643 345678999999999999
Q ss_pred CCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 107 AFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 107 ~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
++.| .+++++++++.||+..+++++++ |++|+++|.++.++.++
T Consensus 93 ~~~g-~l~a~a~vi~~Gr~~~v~~~~v~-d~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 93 VSEG-KVRGVCQPLHLGRQNQSWEIVVF-DEQGRRCCTCRLGTAVL 136 (137)
T ss_pred CcCC-eEEEEEEEEecCcCEEEEEEEEE-cCCCCEEEEEEEEEEEe
Confidence 9977 79999999999999999999999 68999999999999875
No 3
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=2e-25 Score=157.92 Aligned_cols=134 Identities=28% Similarity=0.407 Sum_probs=111.1
Q ss_pred CchHHHHHHHHcCCCCCCCCcccccccCccchhhceeecCeEEEEecCCeEEEEEEcCCCCCC--CCCcccHHHHHHHHH
Q 031596 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLN--AGNFMHGGATATLVD 78 (157)
Q Consensus 1 ~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~n--~~g~vhGG~~~~l~D 78 (157)
|+.+++++.+++... ...+| ..+ +|+++.+++++.+.+++++++.|+| +.|.+|||++++|+|
T Consensus 4 ~~~~~~~~~~~~~~~------------~~~pf-~~~--lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D 68 (154)
T PRK11688 4 LTQEEALKLVGEIFV------------YHMPF-NRL--LGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLD 68 (154)
T ss_pred cCHHHHHHHHHHHHH------------hcCCH-HHH--hCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHH
Confidence 566777777776441 01122 222 4999999999999999999999996 689999999999999
Q ss_pred HHHHHhHHhhCC--------------CceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEE
Q 031596 79 LVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 79 ~~~~~~~~~~~~--------------~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~ 144 (157)
.+++.++..... ....+|++++++|++|++ |+.+++++++++.||+..+++++++ +++|+++|+
T Consensus 69 ~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~-~~~g~lvA~ 146 (154)
T PRK11688 69 VAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELH-NEQGVHIAS 146 (154)
T ss_pred HHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEE-CCCCCEEEE
Confidence 999998865321 023589999999999997 8899999999999999999999999 588999999
Q ss_pred EEEEEEE
Q 031596 145 GRHTKYL 151 (157)
Q Consensus 145 a~~~~~i 151 (157)
++++|++
T Consensus 147 a~~t~~v 153 (154)
T PRK11688 147 GTATYLV 153 (154)
T ss_pred EEEEEEe
Confidence 9999986
No 4
>PLN02322 acyl-CoA thioesterase
Probab=99.94 E-value=3.1e-25 Score=155.86 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=102.0
Q ss_pred cCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEE
Q 031596 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAK 118 (157)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~ 118 (157)
+|+++.++++|++++++++.+.|+|+.|.+|||++++|+|.+++.+..........+|++++++|++|++.|+.++++++
T Consensus 16 LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~ 95 (154)
T PLN02322 16 LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEAT 95 (154)
T ss_pred CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEE
Confidence 59999999999999999999999999999999999999999988776543333457999999999999999989999999
Q ss_pred EEEecCcEEEEEEEEEEC----C-CCcEEEEEEEEEEEe
Q 031596 119 VLRVGKAVAVVSVELRKK----D-TGKIVAQGRHTKYLA 152 (157)
Q Consensus 119 v~~~g~~~~~~~~~v~~d----~-~g~~~a~a~~~~~i~ 152 (157)
+++.||+..+++++|++. + +|++++.+++|+.+.
T Consensus 96 vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 96 PVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred EEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 999999999999999952 1 389999999999654
No 5
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.93 E-value=8.9e-25 Score=147.25 Aligned_cols=111 Identities=26% Similarity=0.315 Sum_probs=102.0
Q ss_pred cCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEE
Q 031596 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAK 118 (157)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~ 118 (157)
+|+++.+++++++.++++++++|+|+.|++|||++++++|.+++.++.... ...+|.+++++|++|++.|+.++++++
T Consensus 4 lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~--~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 4 LGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG--DAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred cCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC--CceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 599999999999999999999999999999999999999999876654332 346899999999999999999999999
Q ss_pred EEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 119 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 119 v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
+.+.|++..+++++++ +++|++++.++++++++
T Consensus 82 v~~~g~~~~~~~~~i~-~~~~~~va~~~~t~~~~ 114 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVV-NQEGELVALFRGTSRRL 114 (114)
T ss_pred EEEeCCcEEEEEEEEE-cCCCCEEEEEEEEEEEC
Confidence 9999999999999999 58999999999999874
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.93 E-value=9.4e-25 Score=147.72 Aligned_cols=112 Identities=28% Similarity=0.420 Sum_probs=102.2
Q ss_pred ecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHh-hCCCceeEEEEEEEEEeecCCCCCeEEEE
Q 031596 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT-VGAPSVGVSVEINVSYLDAAFGGEEIEIE 116 (157)
Q Consensus 38 ~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~-~~~~~~~vt~~l~i~f~~p~~~g~~~~~~ 116 (157)
.+|+++.+++++++++++++.|+++|+.|++|||++++++|.+++.++.. .......+|++++++|++|++.| .++++
T Consensus 5 ~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~ 83 (117)
T TIGR00369 5 FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAI 83 (117)
T ss_pred ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEE
Confidence 35999999999999999999999999999999999999999998776654 33445679999999999999999 99999
Q ss_pred EEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 117 AKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 117 ~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
+++++.||+..+++++++ |++|+++++++++|++
T Consensus 84 a~v~~~gr~~~~~~~~i~-~~~g~~va~~~~t~~~ 117 (117)
T TIGR00369 84 AQVVHLGRQTGVAEIEIV-DEQGRLCALSRGTTAV 117 (117)
T ss_pred EEEEecCceEEEEEEEEE-CCCCCEEEEEEEEEcC
Confidence 999999999999999999 6899999999999874
No 7
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=148.30 Aligned_cols=119 Identities=55% Similarity=0.824 Sum_probs=112.3
Q ss_pred cCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEE
Q 031596 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAK 118 (157)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~ 118 (157)
.++++....+|++.+++++.+.|+|+.+.+|||+.|+|+|.++..++....+..+.++++|+++|++|+++|+.+.++++
T Consensus 27 ~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~ 106 (148)
T KOG3328|consen 27 NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEAT 106 (148)
T ss_pred CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEE
Confidence 69999999999999999999999999999999999999999998876666566789999999999999999999999999
Q ss_pred EEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCCCC
Q 031596 119 VLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISSKM 157 (157)
Q Consensus 119 v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~~~ 157 (157)
+++.|+.+.+++|+++++.+|++.+.++++.++.+.+++
T Consensus 107 ~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 107 VVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred EeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 999999999999999988899999999999999988864
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=7.1e-24 Score=147.92 Aligned_cols=116 Identities=31% Similarity=0.560 Sum_probs=106.9
Q ss_pred cCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCC-CceeEEEEEEEEEeecCCCCCeEEEEE
Q 031596 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGEEIEIEA 117 (157)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~-~~~~vt~~l~i~f~~p~~~g~~~~~~~ 117 (157)
+|+++.++.++.+++++++.+.+.|+.|++|||++++++|.+++.+++.... ....+|++++++|++|++.|+ ++++|
T Consensus 24 lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a 102 (141)
T COG2050 24 LGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGD-VTAEA 102 (141)
T ss_pred cCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCe-EEEEE
Confidence 4899999999999999999999999999999999999999999999987653 344589999999999999996 99999
Q ss_pred EEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 118 KVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 118 ~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
++++.|++..++++++++++.++++|++++++++.++.
T Consensus 103 ~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 103 RVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred EEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 99999999999999999767779999999999998764
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.87 E-value=3.3e-20 Score=123.91 Aligned_cols=110 Identities=41% Similarity=0.656 Sum_probs=100.8
Q ss_pred cCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEEeecCCCCCeEEEEE
Q 031596 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEEIEIEA 117 (157)
Q Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f~~p~~~g~~~~~~~ 117 (157)
+|+++.+.+++.+++++++.+.++|+.|.+|||.+++++|.+++..+.... .....++.+++++|++|++. +.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~ 80 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARA 80 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEE
Confidence 478889999999999999999999999999999999999999998876654 34567999999999999999 7999999
Q ss_pred EEEEecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031596 118 KVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 118 ~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
++.+.|++...++++++ +++|+++++|+++++
T Consensus 81 ~v~~~g~~~~~~~~~~~-~~~~~~~a~a~~~~~ 112 (113)
T cd03443 81 RVVKLGRRLAVVEVEVT-DEDGKLVATARGTFA 112 (113)
T ss_pred EEEecCceEEEEEEEEE-CCCCCEEEEEEEEEe
Confidence 99999999999999999 467999999999986
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.85 E-value=1e-19 Score=126.50 Aligned_cols=111 Identities=22% Similarity=0.263 Sum_probs=94.3
Q ss_pred ecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHh----hCCCceeEEEEEEEEEeecCCCCCeE
Q 031596 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT----VGAPSVGVSVEINVSYLDAAFGGEEI 113 (157)
Q Consensus 38 ~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~----~~~~~~~vt~~l~i~f~~p~~~g~~~ 113 (157)
.+|+++.+++++++.+++++.+. +|+.|++|||++++++|.+++.++.. ...+...++.+++++|++|++. .+
T Consensus 11 ~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~--~~ 87 (138)
T TIGR02447 11 AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTG--DP 87 (138)
T ss_pred HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCC--Ce
Confidence 36999999999999999999996 89999999999999999776654421 2223468999999999999984 37
Q ss_pred EEEEEE-------------EEecCcEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 114 EIEAKV-------------LRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 114 ~~~~~v-------------~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
.++|++ .+.||+.++++++|+ ++|+++++++++|+.++
T Consensus 88 ~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~--~~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 88 VANCEAPDLESWEAFLATLQRGGKARVKLEAQIS--SDGKLAATFSGEYVALP 138 (138)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEE--ECCEEEEEEEEEEEEeC
Confidence 777777 688999999999999 47799999999998763
No 11
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.75 E-value=2.4e-16 Score=106.56 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=92.2
Q ss_pred ecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEE-EEEEeecCCCCCeEEEEEEEEEecC
Q 031596 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGEEIEIEAKVLRVGK 124 (157)
Q Consensus 46 ~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l-~i~f~~p~~~g~~~~~~~~v~~~g~ 124 (157)
..++.++.++++.+.++|+.|.+|||.+++++|.+++.++..... ...++..+ +++|++|++.|+.+.+++++.+.|+
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~-~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~ 81 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAG-GRVVTASVDRIDFLKPVRVGDVVELSARVVYTGR 81 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhC-CcEEEEEECceEEcCccccCcEEEEEEEEEEecC
Confidence 356788999999999999999999999999999998877654432 24567777 7999999999999999999999999
Q ss_pred cEEEEEEEEEECC----CCcEEEEEEEEEEEec
Q 031596 125 AVAVVSVELRKKD----TGKIVAQGRHTKYLAI 153 (157)
Q Consensus 125 ~~~~~~~~v~~d~----~g~~~a~a~~~~~i~~ 153 (157)
+++.+++++++++ +++++++|..+++.++
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 82 TSMEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred CeEEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 9999999999532 3579999999988875
No 12
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.73 E-value=1.4e-16 Score=109.94 Aligned_cols=112 Identities=24% Similarity=0.387 Sum_probs=85.8
Q ss_pred eecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHh-hCCCceeEEEEEEEEEeecCCCCCeEEE
Q 031596 37 IMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT-VGAPSVGVSVEINVSYLDAAFGGEEIEI 115 (157)
Q Consensus 37 ~~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~-~~~~~~~vt~~l~i~f~~p~~~g~~~~~ 115 (157)
...|+++.++++++++++++..+...|+.|++|||++++++|.+++..+.. .+.....+..+++++|++|++ | .+++
T Consensus 17 ~~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~-g-~v~a 94 (132)
T PF14539_consen 17 GTAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR-G-DVTA 94 (132)
T ss_dssp HCCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S----S--EEE
T ss_pred ccceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC-C-cEEE
Confidence 346999999999999999999999999999999999999999998877664 445667789999999999987 5 6999
Q ss_pred EEEEEEe---cCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 116 EAKVLRV---GKAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 116 ~~~v~~~---g~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
++++... ++....++++++ |.+|+++++++.++++
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~-D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEIT-DADGEVVAEATITWYV 132 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEE-ETTC-EEEEEEEEEEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEE-ECCCCEEEEEEEEEEC
Confidence 9998653 266678899999 6999999999999875
No 13
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.71 E-value=1.1e-15 Score=105.55 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=89.7
Q ss_pred cCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEE-EEEEeecCCCCCeEEEEEEEEEecCc
Q 031596 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGEEIEIEAKVLRVGKA 125 (157)
Q Consensus 47 ~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l-~i~f~~p~~~g~~~~~~~~v~~~g~~ 125 (157)
..+.+.....+.|.++|+.|.+|||.++.|+|++++.++.... +..++|+.+ .++|++|++.|+.+++++++.+.|++
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~-~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~s 86 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIA-HGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTT 86 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHc-CCceEEEEECceEECCCcccCcEEEEEEEEEEccCc
Confidence 3556778889999999999999999999999998888876554 346799999 57999999999999999999999999
Q ss_pred EEEEEEEEEE-----C--CCCcEEEEEEEEEEEecC
Q 031596 126 VAVVSVELRK-----K--DTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 126 ~~~~~~~v~~-----d--~~g~~~a~a~~~~~i~~~ 154 (157)
++.++++++. + .+.++++++..+|+.++.
T Consensus 87 S~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~ 122 (133)
T PRK10694 87 SISINIEVWVKKVASEPIGQRYKATEALFTYVAVDP 122 (133)
T ss_pred eEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECC
Confidence 9999999983 1 123457788888887753
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.68 E-value=1.2e-15 Score=95.42 Aligned_cols=78 Identities=32% Similarity=0.548 Sum_probs=70.4
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCC-ceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAP-SVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~-~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
+|++|||.+++|+|.++..++.....+ ...++.+++++|++|++.|+++++++++.+.|++++++++++++ ++++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYS-EDGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEE-TTSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEE-CCCcEEC
Confidence 589999999999999999888876643 67899999999999999999999999999999999999999994 8888875
No 15
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.68 E-value=5.2e-15 Score=103.87 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=90.9
Q ss_pred CCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEE-EEEeecCCCCCeEEEEEEEEEecCcE
Q 031596 48 PGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEIN-VSYLDAAFGGEEIEIEAKVLRVGKAV 126 (157)
Q Consensus 48 ~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~-i~f~~p~~~g~~~~~~~~v~~~g~~~ 126 (157)
.+.+..+..+.|.+.|+.|.+|||.+++++|.+++.++.....+ .+||++++ ++|.+|++.|+.|.+.+++.+.||++
T Consensus 11 ~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~-~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTS 89 (157)
T COG1607 11 EGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGG-RVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTS 89 (157)
T ss_pred CceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCC-eEEEEEeceEEEccccccCcEEEEEEEEeecCccc
Confidence 55667888899999999999999999999999998888766543 67888776 99999999999999999999999999
Q ss_pred EEEEEEEEE----CCCCcEEEEEEEEEEEecC
Q 031596 127 AVVSVELRK----KDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 127 ~~~~~~v~~----d~~g~~~a~a~~~~~i~~~ 154 (157)
+.+.++++. ....+.++++..+|+.++.
T Consensus 90 m~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~ 121 (157)
T COG1607 90 MEVGVEVWAEDIRSGERRLATSAYFTFVAVDE 121 (157)
T ss_pred EEEEEEEEEecccCCcceEeeeEEEEEEEECC
Confidence 999999984 2344567788888887765
No 16
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.60 E-value=1.9e-14 Score=93.87 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=76.4
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~ 144 (157)
.+.+|||.+++++|.+++.++....+.....|++++++|++|++.++++.+++++.+.|++..+.+++++ +++|+++++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~-~~~G~lva~ 92 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAY-QRDGKLVAS 92 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEE-CCCCcEEEE
Confidence 7899999999999999887776543344579999999999999998899999999999999999999999 478999999
Q ss_pred EEEEEE
Q 031596 145 GRHTKY 150 (157)
Q Consensus 145 a~~~~~ 150 (157)
++.++.
T Consensus 93 ~~~~~~ 98 (99)
T cd00556 93 ATQSFL 98 (99)
T ss_pred EEEeEc
Confidence 999875
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.54 E-value=8.2e-13 Score=96.03 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=89.7
Q ss_pred EEEEecCC-eEEEEEEcCCCCC-CCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEE
Q 031596 42 RVDLSEPG-RVICSMKVPPRLL-NAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKV 119 (157)
Q Consensus 42 ~~~~~~~~-~v~~~~~~~~~~~-n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v 119 (157)
++.++.+| .+.....++.++. |..+++|||++++++|.++..+ . .+...++...+++|++|+.+||.+++++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~~~~~~~~i~~irF~kPV~pGD~L~~ea~v 151 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-DAELALTGVANIRFKRPVKLGERVVAKAEV 151 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-CCcEEEEEeeeEEEccCCCCCCEEEEEEEE
Confidence 36778888 6889999999998 9999999999999999864332 1 234467788899999999999999999999
Q ss_pred EEecCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 120 LRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 120 ~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
.+..++...++++++ .+|+++++|+.+++.
T Consensus 152 ~~~~~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 152 VRKKGNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EEccCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 999999999999999 689999999999876
No 18
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=99.52 E-value=7e-13 Score=92.23 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=82.9
Q ss_pred ecCeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhh----CCCceeEEEEEEEEEeecCCCCCeE
Q 031596 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV----GAPSVGVSVEINVSYLDAAFGGEEI 113 (157)
Q Consensus 38 ~~~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~----~~~~~~vt~~l~i~f~~p~~~g~~~ 113 (157)
.+|+++...+++++.+..|..|+ .|+.|+++||.+++++-.+.+..+... +.....|..+.+++|++|+. + ++
T Consensus 17 ~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~-~-d~ 93 (144)
T PF09500_consen 17 AMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT-G-DF 93 (144)
T ss_dssp HTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S----S---
T ss_pred hcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC-C-Cc
Confidence 47999999999999999999996 899999999999999999888776643 33457899999999999997 4 58
Q ss_pred EEEEEEE-------------EecCcEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 114 EIEAKVL-------------RVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 114 ~~~~~v~-------------~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
+++|++- +.||-++.++++++ ++|+++++.++.|++++
T Consensus 94 ~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~--~~~~~~a~f~G~yv~lk 144 (144)
T PF09500_consen 94 TARCSLPEPEDWERFLQTLARGGRARITLEVEIY--SGGELAAEFTGRYVALK 144 (144)
T ss_dssp EEEEE-------S---GGGGCTS-EEEEEEEEEE--ETTEEEEEEEEEEEEE-
T ss_pred EEEEeccccchhHHHHHHHHcCCcEEEEEEEEEE--ECCEEEEEEEEEEEEEC
Confidence 8888886 67889999999999 68999999999998863
No 19
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.51 E-value=1.8e-12 Score=84.84 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=87.3
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecC
Q 031596 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGK 124 (157)
Q Consensus 53 ~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~ 124 (157)
.++++.+.++|..|.+|+|.+..++|.+....+...+ .....++.+.+++|++|++.|+.+++++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 4678889999999999999999999999887665432 23457889999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 125 AVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 125 ~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
+...+..+++ +++|++++++...+...
T Consensus 83 ~~~~~~~~~~-~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 83 KSFTFEQEIF-REDGELLATAETVLVCV 109 (110)
T ss_pred EEEEEEEEEE-CCCCeEEEEEEEEEEEe
Confidence 9999999999 45799999999988765
No 20
>PLN02647 acyl-CoA thioesterase
Probab=99.35 E-value=6.3e-11 Score=95.87 Aligned_cols=111 Identities=13% Similarity=0.084 Sum_probs=91.1
Q ss_pred EEecCCeEEEEEEcC------CCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCC-------ceeEEEEEE-EEEeecCCC
Q 031596 44 DLSEPGRVICSMKVP------PRLLNAGNFMHGGATATLVDLVGSAAIFTVGAP-------SVGVSVEIN-VSYLDAAFG 109 (157)
Q Consensus 44 ~~~~~~~v~~~~~~~------~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~-------~~~vt~~l~-i~f~~p~~~ 109 (157)
....+.++.+.+++. +.+.|+.|.+|||-++.++|.+++.++..+... ..+||++++ ++|++|++.
T Consensus 81 k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi~~ 160 (437)
T PLN02647 81 KTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPIRV 160 (437)
T ss_pred cccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCCcC
Confidence 344555777778554 445999999999999999999999888766532 257888876 999999999
Q ss_pred CCeEEEEEEEEEecCcEEEEEEEEEECC------CCcEEEEEEEEEEEecC
Q 031596 110 GEEIEIEAKVLRVGKAVAVVSVELRKKD------TGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 110 g~~~~~~~~v~~~g~~~~~~~~~v~~d~------~g~~~a~a~~~~~i~~~ 154 (157)
|+.|.+.++|...|++++.+.++++... +..++++|..+|+.++.
T Consensus 161 g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 161 DVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred CcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 9999999999999999999999999521 23478899999988875
No 21
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.3e-11 Score=90.69 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=83.6
Q ss_pred EEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe
Q 031596 43 VDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV 122 (157)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~ 122 (157)
+...+..+.++-+..++..+++.|.+|||++++++|+++..+.+...+....+|++|+++|.+|++...-+.+++.+.+.
T Consensus 119 Fyd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~~~~ 198 (237)
T KOG4781|consen 119 FYDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQLDKV 198 (237)
T ss_pred EEecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecchhhh
Confidence 34445678999999999999999999999999999999999999888788899999999999999999999999999999
Q ss_pred cCcEEEEEEEEE
Q 031596 123 GKAVAVVSVELR 134 (157)
Q Consensus 123 g~~~~~~~~~v~ 134 (157)
.++++.+.+++.
T Consensus 199 ~Grk~~~~g~l~ 210 (237)
T KOG4781|consen 199 EGRKCKTFGELN 210 (237)
T ss_pred cCcccceeeEEE
Confidence 998888887777
No 22
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.32 E-value=3.6e-10 Score=77.43 Aligned_cols=103 Identities=9% Similarity=0.068 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEec
Q 031596 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVG 123 (157)
Q Consensus 52 ~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g 123 (157)
..+..+++..++..|.+|-+.+..+++.+........+ .+...+.++.+++|++|+..||.+++++++.+.+
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~ 83 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMR 83 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeC
Confidence 46778889999999999999999999998776544332 2345678899999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 124 KAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 124 ~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
+++..+..+++ +.+|++++.|..+++.++..
T Consensus 84 ~~s~~~~~~i~-~~~g~~~a~~~~~~v~~d~~ 114 (130)
T PRK10800 84 GTSLTFTQRIV-NAEGTLLNEAEVLIVCVDPL 114 (130)
T ss_pred cEEEEEEEEEE-cCCCeEEEEEEEEEEEEECC
Confidence 99999999999 47899999999998888654
No 23
>PLN02647 acyl-CoA thioesterase
Probab=99.30 E-value=1.5e-10 Score=93.73 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=87.6
Q ss_pred EEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEE-EEEeecCCCCCeEEEEEEEEE
Q 031596 43 VDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEIN-VSYLDAAFGGEEIEIEAKVLR 121 (157)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~-i~f~~p~~~g~~~~~~~~v~~ 121 (157)
.+...+.++.....+.|.+.|..|.+|||.++.++|++++.++..... ..++|+.++ ++|++|++.|+.|.+++.|..
T Consensus 283 ~v~m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~-~~~vt~svd~v~F~~PV~vGdil~l~A~V~y 361 (437)
T PLN02647 283 SILIRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG-LRPYFLEVDHVDFLRPVDVGDFLRFKSCVLY 361 (437)
T ss_pred ceeccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEecCccccCcEEEEEEEEEE
Confidence 345666788888999999999999999999999999999988776653 356777776 999999999999999999987
Q ss_pred ecC-----cEEEEEEE--EEE--CCCCcEEEEEEEEEEEecC
Q 031596 122 VGK-----AVAVVSVE--LRK--KDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 122 ~g~-----~~~~~~~~--v~~--d~~g~~~a~a~~~~~i~~~ 154 (157)
.+. +++.+++. +.+ ..+++++.++..+|+..+.
T Consensus 362 t~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 362 TELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred EeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 665 44555544 443 2355678899999887753
No 24
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.27 E-value=7.1e-10 Score=69.00 Aligned_cols=96 Identities=31% Similarity=0.528 Sum_probs=82.9
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEE
Q 031596 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSV 131 (157)
Q Consensus 53 ~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~ 131 (157)
..+.+.+.+.+..+.+||+.+..++|.+....+.... .....+..+++++|.+|++.|+.+.+++++.+.+++...+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 4567778888899999999999999999887766532 234678899999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEE
Q 031596 132 ELRKKDTGKIVAQGRHTK 149 (157)
Q Consensus 132 ~v~~d~~g~~~a~a~~~~ 149 (157)
.++ +++|++++.+..++
T Consensus 83 ~~~-~~~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVR-NEDGKLVATATATF 99 (100)
T ss_pred EEE-CCCCCEEEEEEEEe
Confidence 999 46799999987654
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.26 E-value=4.2e-10 Score=76.38 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=85.7
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC---------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEec
Q 031596 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG---------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVG 123 (157)
Q Consensus 53 ~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~---------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g 123 (157)
..+++++.++++.|.+|.+.+..+++.+....+...+ .+...+.++.+++|++|++.|+.+.+++++.+.+
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4567888999999999999999999988665544322 1334688899999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031596 124 KAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 124 ~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~ 154 (157)
+++..+..+++ .+|++++.+..+++.++.
T Consensus 83 ~~~~~~~~~i~--~~g~~~a~~~~~~v~vd~ 111 (126)
T TIGR02799 83 GASLVFAQEVR--RGDTLLCEATVEVACVDA 111 (126)
T ss_pred ceEEEEEEEEE--eCCEEEEEEEEEEEEEEC
Confidence 99999999999 478999999999887764
No 26
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.19 E-value=2.5e-09 Score=74.22 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=90.3
Q ss_pred eEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEE
Q 031596 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLR 121 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~ 121 (157)
....++++...+++..|.+|-+.+..+++.+-...+...+ .+...+.++++++|++|++.||.+++++++.+
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 3467888999999999999999999999998776665432 22467999999999999999999999999999
Q ss_pred ecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 122 VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 122 ~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
.|+++..+.-+|++ ++ +++++|+.+.+.++++
T Consensus 85 ~~~~s~~~~~~i~~-~~-~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 85 LGGKSLTLGYEIVN-ED-ELLATGETTLVCVDLK 116 (137)
T ss_pred ecCeEEEEEEEEEe-CC-EEEEEEEEEEEEEECC
Confidence 99999999999994 44 9999999998888744
No 27
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.13 E-value=4.1e-09 Score=70.30 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=79.9
Q ss_pred EEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcE
Q 031596 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAV 126 (157)
Q Consensus 55 ~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~ 126 (157)
+.+++.+++..|.+|.+.+..+++.+....+...+ .+...+.++.+++|.+|++.||.+++++++.+.++++
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 45778889999999999999999998765544322 2345688899999999999999999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 127 AVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 127 ~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
..+..++++ .++.+++.+..+.+.++
T Consensus 82 ~~~~~~i~~-~~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 82 FVFSQEIFN-EDEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEEe-CCCcEEEeeEEEEEEEE
Confidence 999999994 66777766666444444
No 28
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.10 E-value=2.8e-09 Score=69.25 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=69.1
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 64 ~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
+.+.+|||.+++++-.++...+.. .....+++..|++|+..+.+++++.++++.||+..+.+++++ ++|+++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~~~-----~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~--Q~g~~~~ 86 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTVPD-----DRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV--QNGKVIF 86 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhCCC-----CCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE--ECCEEEE
Confidence 588999999999998877654421 235679999999999987899999999999999999999999 6799999
Q ss_pred EEEEEEE
Q 031596 144 QGRHTKY 150 (157)
Q Consensus 144 ~a~~~~~ 150 (157)
.++.+|.
T Consensus 87 ~a~~sf~ 93 (94)
T cd03445 87 TATASFQ 93 (94)
T ss_pred EEEEEEe
Confidence 9999874
No 29
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.05 E-value=1.8e-08 Score=67.84 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=75.1
Q ss_pred cCCCCCCCCCcccHHHHHHHHHHHHHHhHHhh-------CCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEE
Q 031596 57 VPPRLLNAGNFMHGGATATLVDLVGSAAIFTV-------GAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVV 129 (157)
Q Consensus 57 ~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~-------~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~ 129 (157)
+++..++ .|.+|.+.+..+++.+-...+... ..+...+.++.+++|++|++.|+.+++++++.+.+++++.+
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~ 79 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRF 79 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEE
Confidence 3566789 999999999999999866555322 13446789999999999999999999999999999999999
Q ss_pred EEEEEECCCCc--EEEEEEEEEEEecCC
Q 031596 130 SVELRKKDTGK--IVAQGRHTKYLAISS 155 (157)
Q Consensus 130 ~~~v~~d~~g~--~~a~a~~~~~i~~~~ 155 (157)
..++++..+|+ ++|++..+.+..+.+
T Consensus 80 ~~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 80 EQEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp EEEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred EEEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 99999633554 499999988877654
No 30
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=99.01 E-value=1.1e-08 Score=77.59 Aligned_cols=83 Identities=27% Similarity=0.354 Sum_probs=65.9
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~ 144 (157)
.+.+|||++++++-.++.... .+......+++++|++|++.| +++++++++|.||+..+++++++ ++|++++.
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~----~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~--q~~~~~~~ 81 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA----PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS--QDGKVVAT 81 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH----TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE--ETTEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc----cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE--ECCcCEEE
Confidence 678999988887776655443 112257899999999999999 99999999999999999999999 78999999
Q ss_pred EEEEEEEecC
Q 031596 145 GRHTKYLAIS 154 (157)
Q Consensus 145 a~~~~~i~~~ 154 (157)
++++|.....
T Consensus 82 a~~~f~~~~~ 91 (255)
T PF13622_consen 82 ATASFGRPEP 91 (255)
T ss_dssp EEEEEE--TT
T ss_pred EEEEEccCcC
Confidence 9999877654
No 31
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.94 E-value=5e-08 Score=80.84 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=90.7
Q ss_pred eEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC-------CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe
Q 031596 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV 122 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~-------~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~ 122 (157)
..+.++++.+.+++..|.++-+.+..++|.+....+...+ .+...+.++.+++|++|++.|+.+++++++.+.
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~ 424 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG 424 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec
Confidence 4567999999999999999999999999988665544332 133457899999999999999999999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 123 GKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 123 g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
+++++.++.+++ +.+|++++++..+++.++..
T Consensus 425 ~~~s~~~~~~i~-~~~g~l~A~g~~~~v~vD~~ 456 (495)
T PRK07531 425 DEKRLHLFHTLY-DAGGELIATAEHMLLHVDLK 456 (495)
T ss_pred CCcEEEEEEEEE-CCCCcEEEEEEEEEEEEECC
Confidence 999999999999 47899999999998887643
No 32
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.91 E-value=7.1e-08 Score=65.38 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=65.7
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecC--cEEEEEEEEEECCCCcEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGK--AVAVVSVELRKKDTGKIV 142 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~--~~~~~~~~v~~d~~g~~~ 142 (157)
.-++||..++++++.+.... .++...+....+++|++|+..|+++++++++.+... ..+.++++++ +++|+++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~~----~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~-~~~g~~v 119 (128)
T cd03449 45 GRIAHGMLTASLISAVLGTL----LPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCT-NQNGEVV 119 (128)
T ss_pred CceecHHHHHHHHHHHHhcc----CCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEE-eCCCCEE
Confidence 45799999999987654321 122244667889999999999999999999997766 7889999999 4889999
Q ss_pred EEEEEEEEE
Q 031596 143 AQGRHTKYL 151 (157)
Q Consensus 143 a~a~~~~~i 151 (157)
++++.+.++
T Consensus 120 ~~g~~~~~~ 128 (128)
T cd03449 120 IEGEAVVLA 128 (128)
T ss_pred EEEEEEEeC
Confidence 999988753
No 33
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.79 E-value=1.3e-06 Score=59.39 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=80.2
Q ss_pred EEEecC-CeEEEEEEcCCCCC---CC---CCcccHHHHHHHHHHHHHHhHHhhC---CCcee-EEEEEEEEEeecCCCCC
Q 031596 43 VDLSEP-GRVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIFTVG---APSVG-VSVEINVSYLDAAFGGE 111 (157)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~~---n~---~g~vhGG~~~~l~D~~~~~~~~~~~---~~~~~-vt~~l~i~f~~p~~~g~ 111 (157)
+..+++ ++++....+.+++. ++ ...++|-.+..++..+++....... ..... ....-+++|.+|+++|+
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 345663 57777777776532 33 3778888888888877666544321 12223 33446899999999999
Q ss_pred eEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 112 EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 112 ~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
.+++++++.+.+++...++++++ .+|+++++++.+++.
T Consensus 93 ~l~i~~~v~~~~~~~~~~~~~~~--~~g~~v~~~~~~~~~ 130 (131)
T cd01288 93 QLILEVELLKLRRGIGKFKGKAY--VDGKLVAEAELMFAI 130 (131)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 99999999999999999999998 689999999999875
No 34
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.76 E-value=2.4e-06 Score=59.68 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=78.4
Q ss_pred EEEecC-CeEEEEEEcCCCCC---C---CCCcccHHHHHHHHHHHHHHhHHhhC--CCceeEEEE-EEEEEeecCCCCCe
Q 031596 43 VDLSEP-GRVICSMKVPPRLL---N---AGNFMHGGATATLVDLVGSAAIFTVG--APSVGVSVE-INVSYLDAAFGGEE 112 (157)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~~---n---~~g~vhGG~~~~l~D~~~~~~~~~~~--~~~~~vt~~-l~i~f~~p~~~g~~ 112 (157)
+.++++ ++++....+.+++. + ....++|-.+..++..+++....... .+....... -+++|++|+++||.
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 345554 57777777766543 2 24568887777766666554332211 122333333 37999999999999
Q ss_pred EEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 113 IEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 113 ~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
+++++++.+..++.+.++++++ .+|+++++++.++++.+
T Consensus 108 l~i~~~i~~~~~~~v~~~~~~~--~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 108 LILEVELLKQRRGIWKFKGVAT--VDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEEEc
Confidence 9999999999999999999998 68999999999998754
No 35
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.73 E-value=1.4e-06 Score=58.66 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
...+-=+++..+++.++..++.... .+...+..+.+++.++|+++|.++++.+++.+..++.+.++.++. ++|..+.
T Consensus 28 ~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig 105 (130)
T COG5496 28 LNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIG 105 (130)
T ss_pred cceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEe
Confidence 4556678999999999988887544 455678899999999999999999999999999999999999999 7999999
Q ss_pred EEEEEEEEecCCCC
Q 031596 144 QGRHTKYLAISSKM 157 (157)
Q Consensus 144 ~a~~~~~i~~~~~~ 157 (157)
+++++-+++++.||
T Consensus 106 ~g~h~R~iv~~~kf 119 (130)
T COG5496 106 EGTHTRVIVPREKF 119 (130)
T ss_pred eeEEEEEEecHHHH
Confidence 99999999987654
No 36
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.69 E-value=2e-07 Score=72.85 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=84.9
Q ss_pred EEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEE
Q 031596 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVEL 133 (157)
Q Consensus 54 ~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v 133 (157)
.+.+.|.|.|+.|++.-|+++.++-++.-..+.... ....+.-++++.|++|++.++.+++..+++..||+...+++++
T Consensus 336 t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~-~~niiIE~i~iyflk~vqid~~l~I~prIl~~gR~~a~idvei 414 (432)
T COG4109 336 TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKK-KRNIIIENITIYFLKPVQIDSVLEIYPRILEEGRKFAKIDVEI 414 (432)
T ss_pred EEEechhhccccccchHHHHHHHHHHHHHHHHHHhc-CCceEEEeeeeeeecceecccEEEEeeeeeccccccceeEEEE
Confidence 388999999999999999999999998776666543 3356788999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEEEEEEEe
Q 031596 134 RKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 134 ~~d~~g~~~a~a~~~~~i~ 152 (157)
+ .+|..+++|..++.+.
T Consensus 415 ~--~~~~ivaKAiv~~ql~ 431 (432)
T COG4109 415 Y--HDGQIVAKAIVTVQLN 431 (432)
T ss_pred e--eCcchhhhheeeeecc
Confidence 9 6888899998887654
No 37
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.59 E-value=6.3e-07 Score=68.66 Aligned_cols=78 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEE
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQG 145 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a 145 (157)
+.++||.+++.+=.++...+. . .....+++++|++|+..+.+++++.++++.||+..+.+++++ ++|++++++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv~---~--~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~a 93 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTVP---E--EFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFTL 93 (271)
T ss_pred CceEccHHHHHHHHHHHhcCC---C--CCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEEE
Confidence 589999999998877665542 1 224458999999999988899999999999999999999999 689999999
Q ss_pred EEEEE
Q 031596 146 RHTKY 150 (157)
Q Consensus 146 ~~~~~ 150 (157)
+++|.
T Consensus 94 ~asf~ 98 (271)
T TIGR00189 94 QASFQ 98 (271)
T ss_pred EEEcc
Confidence 99987
No 38
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.55 E-value=3e-06 Score=57.40 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=60.6
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCc-EEEEEEEEEECCCCcEEEE
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKA-VAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~-~~~~~~~v~~d~~g~~~a~ 144 (157)
-++||...++++..+.... .+. ......++++|.+|+..||.+++++++....+. .+.+++++. |++|+++.+
T Consensus 44 ~ia~G~~~~~~~~~~~~~~---~~~--~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~-nq~G~~v~~ 117 (123)
T cd03455 44 LYVNGPTLAGLVIRYVTDW---AGP--DARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWAR-NSEGDHVMA 117 (123)
T ss_pred eEEEHHHHHHHHHHHHHHc---cCC--cceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEE-cCCCCEEEe
Confidence 3599999999998654322 111 234567899999999999999999999865433 778888888 699999999
Q ss_pred EEEEE
Q 031596 145 GRHTK 149 (157)
Q Consensus 145 a~~~~ 149 (157)
+++++
T Consensus 118 g~a~v 122 (123)
T cd03455 118 GTATV 122 (123)
T ss_pred EEEEE
Confidence 98875
No 39
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.51 E-value=3.2e-06 Score=56.97 Aligned_cols=81 Identities=25% Similarity=0.317 Sum_probs=63.9
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecC----cEEEEEEEEEECCCC
Q 031596 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGK----AVAVVSVELRKKDTG 139 (157)
Q Consensus 64 ~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~----~~~~~~~~v~~d~~g 139 (157)
...++||..+++++...+...+.. .........+++|.+|+.+|+.+++++++..... ..+.+++.+. +++|
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~-n~~g 116 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLPG---TDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEAR-NQGG 116 (127)
T ss_pred CCceechHHHHHHHHhhhhhhccC---cccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEE-eCCC
Confidence 456799999999998765443221 1245667889999999999999999999987754 5788999999 4889
Q ss_pred cEEEEEEEE
Q 031596 140 KIVAQGRHT 148 (157)
Q Consensus 140 ~~~a~a~~~ 148 (157)
+++..++.+
T Consensus 117 ~~v~~g~~~ 125 (127)
T cd03441 117 EVVLSGEAT 125 (127)
T ss_pred CEEEEEEEE
Confidence 998887765
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.45 E-value=9.4e-06 Score=55.45 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=62.8
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCC-CcEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDT-GKIVA 143 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~-g~~~a 143 (157)
.-++||-..++++-.+.... ...........++++|++|+.+|+.++++.++.........++.+++| ++ |+++.
T Consensus 42 ~~iahG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~n-q~~g~~V~ 117 (126)
T cd03447 42 GTITHGMYTSAAVRALVETW---AADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARN-EETGELVL 117 (126)
T ss_pred CCeechhHHHHHHHHHHHHh---ccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEE-CCCCCEEE
Confidence 34599999999986654321 111223355668999999999999999999999887778899999995 77 99998
Q ss_pred EEEEEEE
Q 031596 144 QGRHTKY 150 (157)
Q Consensus 144 ~a~~~~~ 150 (157)
.++..+.
T Consensus 118 ~g~~~v~ 124 (126)
T cd03447 118 RGEAEVE 124 (126)
T ss_pred EEEEEEe
Confidence 8887653
No 41
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.45 E-value=3.1e-06 Score=58.77 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=60.6
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecC-------cEEEEEEEEEECC
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGK-------AVAVVSVELRKKD 137 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~-------~~~~~~~~v~~d~ 137 (157)
.-++||..+++++-... ...............+++|.+|+.+||.+++++++.+.-. ..+.++++++ ++
T Consensus 53 ~~ia~G~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq 128 (146)
T cd03451 53 RRLVNSLFTLSLALGLS---VNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGY-NQ 128 (146)
T ss_pred CccccHHhHHHHHhhhe---ehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEE-CC
Confidence 44688888887763211 1111110111122238999999999999999999986542 4888899999 69
Q ss_pred CCcEEEEEEEEEEEecC
Q 031596 138 TGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 138 ~g~~~a~a~~~~~i~~~ 154 (157)
+|+++++++.++++..+
T Consensus 129 ~g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 129 DGEPVLSFERTALVPKR 145 (146)
T ss_pred CCCEEEEEEehhEEEcC
Confidence 99999999999887754
No 42
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=98.36 E-value=7.3e-06 Score=63.53 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 64 ~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
....++||.+++.+=.++...+ ..+ ....++++.|++|+..+.++..+.+.++-||+..+..++++ ++|+++.
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv---~~~--~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~--Q~g~~if 102 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETV---PEE--RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAI--QNGKPIF 102 (286)
T ss_pred CCCceechHHHHHHHHHHHhcC---CCC--CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEE--ECCEEEE
Confidence 4578999999998877766554 222 25579999999999989899999999999999999999999 7899999
Q ss_pred EEEEEEEEe
Q 031596 144 QGRHTKYLA 152 (157)
Q Consensus 144 ~a~~~~~i~ 152 (157)
.++++|...
T Consensus 103 ~~~~sF~~~ 111 (286)
T PRK10526 103 YMTASFQAP 111 (286)
T ss_pred EEEEEeccC
Confidence 999998743
No 43
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.34 E-value=1.8e-05 Score=53.90 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=58.9
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe----cCcEEEEEEEEEECCCCcE
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV----GKAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~----g~~~~~~~~~v~~d~~g~~ 141 (157)
-++||-..++++..+.... ... .....+++++|++|+.+||.++++.++... ++..+.++++++ |++|++
T Consensus 45 ~i~~G~~~~~~~~~~~~~~---~~~--~~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~-nq~g~~ 118 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTDW---VGD--PGRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDAT-DQAGGK 118 (127)
T ss_pred cEecHHHHHHHHHHHHHHH---cCC--ccceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEE-EcCCCE
Confidence 4699999888886543322 111 223367889999999999999999999743 346788999999 499999
Q ss_pred EEEEEEEE
Q 031596 142 VAQGRHTK 149 (157)
Q Consensus 142 ~a~a~~~~ 149 (157)
+..+++..
T Consensus 119 v~~g~a~v 126 (127)
T cd03453 119 KVLGRAIV 126 (127)
T ss_pred EEEEEEEE
Confidence 98888753
No 44
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.34 E-value=7.1e-06 Score=64.71 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=76.7
Q ss_pred CeEEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEE-EEEeecCCCCCeEEEEEE
Q 031596 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEIN-VSYLDAAFGGEEIEIEAK 118 (157)
Q Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~-i~f~~p~~~g~~~~~~~~ 118 (157)
........+..+....-..|++.|..|.+|||+++-++++.+...+...... .+.+.+++ |+|.+|+..|..+++.+.
T Consensus 189 ~~~~~~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~-~p~~rsVD~i~F~~pVdvG~~L~f~s~ 267 (357)
T KOG2763|consen 189 SPKMVWMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKG-RPATRSVDDIEFQKPVDVGCVLTFSSF 267 (357)
T ss_pred CCcceEeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCC-CceEEEechhhccCcceeeeEEEEeeE
Confidence 3344556777888888899999999999999999999999999888877644 33555554 899999999999999999
Q ss_pred EEEecCcEEEEEEEEE
Q 031596 119 VLRVGKAVAVVSVELR 134 (157)
Q Consensus 119 v~~~g~~~~~~~~~v~ 134 (157)
+.....+...+++++.
T Consensus 268 V~yT~~k~~~vqv~~~ 283 (357)
T KOG2763|consen 268 VTYTDNKSIYVQVKAV 283 (357)
T ss_pred EEEecCCceeEEEEEe
Confidence 9988888566666554
No 45
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.34 E-value=7.1e-05 Score=51.72 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=74.1
Q ss_pred EEEec-CCeEEEEEEcCCCCC---CC---CCcccHHHHHHHHHHHHHHhH-HhhC----CCceeEEEE-EEEEEeecCCC
Q 031596 43 VDLSE-PGRVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAI-FTVG----APSVGVSVE-INVSYLDAAFG 109 (157)
Q Consensus 43 ~~~~~-~~~v~~~~~~~~~~~---n~---~g~vhGG~~~~l~D~~~~~~~-~~~~----~~~~~vt~~-l~i~f~~p~~~ 109 (157)
+.+++ +++++.+..+++++. ++ ...+-|-++..++-.+++..+ .... .+....... -+++|.+|+++
T Consensus 21 i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~p 100 (140)
T TIGR01750 21 ILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVP 100 (140)
T ss_pred EEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCC
Confidence 35566 467788887777643 22 334556666666555544332 1111 112333444 48999999999
Q ss_pred CCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031596 110 GEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 110 g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
|+.+++++++.+..++...++++++ .+|+++++++.+++
T Consensus 101 Gd~l~i~~~i~~~~~~~~~~~~~~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 101 GDQLILHAEFLKKRRKIGKFKGEAT--VDGKVVAEAEITFA 139 (140)
T ss_pred CCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEEEEE
Confidence 9999999999999999999999997 68999999999875
No 46
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=98.32 E-value=0.00021 Score=49.48 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=77.5
Q ss_pred EEEecCCeEEEEEEcCCCCC--C-CCCcccHHHHHHHHHHHHHHhHH--h--hC-CCceeEEEEE-EEEEeecCCC-CCe
Q 031596 43 VDLSEPGRVICSMKVPPRLL--N-AGNFMHGGATATLVDLVGSAAIF--T--VG-APSVGVSVEI-NVSYLDAAFG-GEE 112 (157)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~--n-~~g~vhGG~~~~l~D~~~~~~~~--~--~~-~~~~~vt~~l-~i~f~~p~~~-g~~ 112 (157)
+.++++++++....++.... . +.+.+-|=.+...+-.+++.... . .+ .+..+.-..+ +++|.+|+.+ |+.
T Consensus 19 v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd~ 98 (138)
T cd01289 19 VISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGST 98 (138)
T ss_pred EEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCCe
Confidence 35567777777777765432 2 33677787777777766554431 1 11 2333444443 7999999755 999
Q ss_pred EEEEEEEEEecC-cEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 113 IEIEAKVLRVGK-AVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 113 ~~~~~~v~~~g~-~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
++++++..+..+ ....++++++ .+|+++|+|+.+++..
T Consensus 99 l~i~~~~~~~~~~~~~~~~~~~~--v~~~~va~a~l~~~~p 137 (138)
T cd01289 99 LLIVVAELLQGDSGLGVFECTIE--DQGGVLASGRLNVYQP 137 (138)
T ss_pred eEEEeeeeeeCCCcEEEEEEEEE--ECCEEEEEEEEEEEcC
Confidence 999999998885 9999999999 6899999999988764
No 47
>PLN02370 acyl-ACP thioesterase
Probab=98.31 E-value=0.0001 Score=59.91 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=90.1
Q ss_pred eEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------------CCceeEEEEEEEEEeecCCCCCeEEE
Q 031596 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------------APSVGVSVEINVSYLDAAFGGEEIEI 115 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------------~~~~~vt~~l~i~f~~p~~~g~~~~~ 115 (157)
...-.+.++...++..|.+.-..++.++.+++...+...+ .+...|....+++|.+|+..|+.|++
T Consensus 139 ~y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V 218 (419)
T PLN02370 139 VFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQV 218 (419)
T ss_pred EEEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEE
Confidence 4456778888999999999999999999988877654322 23357889999999999999999999
Q ss_pred EEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 116 EAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 116 ~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
++++.+.++..+..+.+|++..+|+++++|+.+++.++..
T Consensus 219 ~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~ 258 (419)
T PLN02370 219 DTWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMNKL 258 (419)
T ss_pred EEEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEECC
Confidence 9999999999999999999534899999999998888753
No 48
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=98.30 E-value=0.00016 Score=59.35 Aligned_cols=110 Identities=10% Similarity=0.142 Sum_probs=78.7
Q ss_pred EEecCCeEEEEEEcCCCC--C-C---CCCcccHHHHHHHHHHHHHHhHHhh-C--CCceeEEEEE-EEEEeecCCCCCeE
Q 031596 44 DLSEPGRVICSMKVPPRL--L-N---AGNFMHGGATATLVDLVGSAAIFTV-G--APSVGVSVEI-NVSYLDAAFGGEEI 113 (157)
Q Consensus 44 ~~~~~~~v~~~~~~~~~~--~-n---~~g~vhGG~~~~l~D~~~~~~~~~~-~--~~~~~vt~~l-~i~f~~p~~~g~~~ 113 (157)
.++++++++....++.+. . + ....++|=.+..++-.+++..+... . .+.......+ +++|.+|+.+|+.+
T Consensus 343 l~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL 422 (464)
T PRK13188 343 IELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTL 422 (464)
T ss_pred eEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEE
Confidence 455567777777776643 2 2 3566888887777666655443221 1 1223344444 78999999999999
Q ss_pred EEEEEEEE-ecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 114 EIEAKVLR-VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 114 ~~~~~v~~-~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
++++++.+ ..+..+.++++++ .+|+++++|+..+++...+
T Consensus 423 ~I~veI~~~~~~giv~f~g~~~--vdGelVaeael~~~v~~~~ 463 (464)
T PRK13188 423 IFKVELLSPIRRGICQMQGKAY--VNGKLVCEAELMAQIVKKK 463 (464)
T ss_pred EEEEEEEEEecCCEEEEEEEEE--ECCEEEEEEEEEEEEeccC
Confidence 99999986 5567889999999 6999999999999886543
No 49
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.29 E-value=0.00019 Score=48.56 Aligned_cols=104 Identities=20% Similarity=0.308 Sum_probs=75.3
Q ss_pred EEEecC-CeEEEEEEcCCCCCC---C---CCcccHHHHHHHHHHHHHHhHHhhC-----CCcee-EEEEEEEEEeecCCC
Q 031596 43 VDLSEP-GRVICSMKVPPRLLN---A---GNFMHGGATATLVDLVGSAAIFTVG-----APSVG-VSVEINVSYLDAAFG 109 (157)
Q Consensus 43 ~~~~~~-~~v~~~~~~~~~~~n---~---~g~vhGG~~~~l~D~~~~~~~~~~~-----~~~~~-vt~~l~i~f~~p~~~ 109 (157)
+..+++ +++..+..+++++.- + .+.+-|-++..++-.+++....... ..... ....-+++|.+|+.+
T Consensus 12 i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~p 91 (131)
T cd00493 12 VLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLP 91 (131)
T ss_pred EEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCC
Confidence 456676 788888888776542 2 2567777777666666555543321 12223 333458999999999
Q ss_pred CCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 110 GEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 110 g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
|+.+++++++...+.....+++++++ +|+++++++.+
T Consensus 92 gd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~~ 128 (131)
T cd00493 92 GDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAELM 128 (131)
T ss_pred CCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEE
Confidence 99999999999998899999999994 69999999843
No 50
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.28 E-value=1.4e-05 Score=55.08 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=56.3
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCC-Cce-eEEEEEEEEEeecCCCCCeEEEEEEEEEec------CcEEEEEEEEEECC
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGA-PSV-GVSVEINVSYLDAAFGGEEIEIEAKVLRVG------KAVAVVSVELRKKD 137 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~-~~~-~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g------~~~~~~~~~v~~d~ 137 (157)
-++||..+++++..+... .... ... .....-+++|++|+++||.+++++++.+.. +..+.++++++ |+
T Consensus 51 ~ia~G~~~~a~~~~~~~~---~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~-nq 126 (140)
T cd03446 51 RIAHGLLTLSIATGLLQR---LGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVV-NQ 126 (140)
T ss_pred ceeccccHHHHHhhHhhh---cccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEE-cC
Confidence 368888887766543221 1111 111 112223899999999999999999998653 24678888889 59
Q ss_pred CCcEEEEEEEEEE
Q 031596 138 TGKIVAQGRHTKY 150 (157)
Q Consensus 138 ~g~~~a~a~~~~~ 150 (157)
+|+++++++.+..
T Consensus 127 ~g~~v~~~~~~~l 139 (140)
T cd03446 127 RGEVVQSGEMSLL 139 (140)
T ss_pred CCCEEEEEEEeee
Confidence 9999999998765
No 51
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.24 E-value=2.4e-05 Score=54.40 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCCCceeEE-EEEEEEEeecCCCCCeEEEEEEEEEec------CcEEEEEEEEEECCC
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVS-VEINVSYLDAAFGGEEIEIEAKVLRVG------KAVAVVSVELRKKDT 138 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt-~~l~i~f~~p~~~g~~~~~~~~v~~~g------~~~~~~~~~v~~d~~ 138 (157)
-++||...++++..... ....+..... ..-+++|++|+.+||.|+++.++.... +..+.+++++. |++
T Consensus 51 ~ia~G~l~~s~~~~l~~----~~~~~~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~-nq~ 125 (142)
T cd03452 51 RVAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVT-NQN 125 (142)
T ss_pred eeecHHHHHHHHhhhCc----cCCcccEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEE-ecC
Confidence 46899888888875321 1111111111 124999999999999999999998652 13688999999 599
Q ss_pred CcEEEEEEEEEEEecC
Q 031596 139 GKIVAQGRHTKYLAIS 154 (157)
Q Consensus 139 g~~~a~a~~~~~i~~~ 154 (157)
|+++++++...++..+
T Consensus 126 g~~V~~~~~~~~~~~~ 141 (142)
T cd03452 126 GELVASYDILTLVAKK 141 (142)
T ss_pred CCEEEEEEehHeeEec
Confidence 9999999998876643
No 52
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=98.24 E-value=2.5e-05 Score=55.46 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=50.9
Q ss_pred eEEEEEEEEEeecCCCCCeEEEEEEEEEe----cCcEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031596 94 GVSVEINVSYLDAAFGGEEIEIEAKVLRV----GKAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 94 ~vt~~l~i~f~~p~~~g~~~~~~~~v~~~----g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~ 154 (157)
.+-...+++|++|+.+||.|+++.++... ++..+.++++++ |++|++|++++.++++..-
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~-Nq~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT-NEEGDVVQETYTTLAGRAG 147 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEE-cCCCCEEEEEEEEEEEecC
Confidence 34556799999999999999999999743 456899999999 5999999999999888753
No 53
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.23 E-value=1.1e-05 Score=65.62 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=75.2
Q ss_pred EEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe
Q 031596 43 VDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV 122 (157)
Q Consensus 43 ~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~ 122 (157)
++.++++...... .+.. ...+.+|||.+++.+=.++...+. +. ....++++.|++|...+.++..+.+.+|.
T Consensus 138 l~~~~~~~f~~~~--~~~~-~~~~~~fGG~~~aqal~Aa~~~~~---~~--~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~ 209 (413)
T PLN02868 138 LEPLEVDIFRGIT--LPDA-PTFGKVFGGQLVGQALAAASKTVD---PL--KLVHSLHAYFLLVGDINLPIIYQVERIRD 209 (413)
T ss_pred cEeccCCeEECCc--CCCC-cccccccchHHHHHHHHHHHccCC---CC--CCceEeeeeecCCCCCCCCEEEEEEEEcC
Confidence 3455666433333 2322 235789999999987766554432 22 24578999999999887799999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 123 GKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 123 g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
||+..+.+++++ ++|+++..++++|...
T Consensus 210 Grs~~~r~v~~~--Q~g~~~~~~~~sf~~~ 237 (413)
T PLN02868 210 GHNFATRRVDAI--QKGKVIFTLFASFQKE 237 (413)
T ss_pred CCceEeeEEEEE--ECCeeEEEEeeccccC
Confidence 999999999999 7899999999987654
No 54
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.21 E-value=2.9e-05 Score=53.63 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=56.1
Q ss_pred cccHHHHHHHHHHHHHHhHHhhCCCceeEEE-EEEEEEeecCCCCCeEEEEEEEEEec-------CcEEEEEEEEEECCC
Q 031596 67 FMHGGATATLVDLVGSAAIFTVGAPSVGVSV-EINVSYLDAAFGGEEIEIEAKVLRVG-------KAVAVVSVELRKKDT 138 (157)
Q Consensus 67 ~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~-~l~i~f~~p~~~g~~~~~~~~v~~~g-------~~~~~~~~~v~~d~~ 138 (157)
++||...++++-....... .......... ..+++|.+|+.+|+.+++++++.+.. +..+.++++++ |++
T Consensus 50 ia~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~-nq~ 126 (140)
T cd03454 50 AASGWHTAAITMRLLVDAG--LSGSASGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETL-NQR 126 (140)
T ss_pred eechHHHHHHHHHhhhhhc--cccceEEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEE-cCC
Confidence 5787777776543221111 0110011222 34899999999999999999998553 44788999999 599
Q ss_pred CcEEEEEEEEEEE
Q 031596 139 GKIVAQGRHTKYL 151 (157)
Q Consensus 139 g~~~a~a~~~~~i 151 (157)
|+++++++.+.++
T Consensus 127 g~~v~~~~~~~~~ 139 (140)
T cd03454 127 GEVVLTFEATVLV 139 (140)
T ss_pred CCEEEEEEehhee
Confidence 9999999987654
No 55
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=98.14 E-value=0.00013 Score=52.25 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=49.4
Q ss_pred EEEEEEEEEeecCCCCCeEEEEEEEEEe----cCcEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031596 95 VSVEINVSYLDAAFGGEEIEIEAKVLRV----GKAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 95 vt~~l~i~f~~p~~~g~~~~~~~~v~~~----g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~ 154 (157)
+-...+++|++|+..||.|+++.++... ++..+.+++++. |++|+++++++.+.+....
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~-NQ~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCT-NDDGELVMEAYTTLMGQQG 147 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEE-CCCCCEEEEEEEEEEEecC
Confidence 3345588899999999999999999855 345788999999 6999999999999877654
No 56
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=98.10 E-value=0.0001 Score=60.90 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=64.3
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe--cCcEEEEEEEEEECCCCcEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV--GKAVAVVSVELRKKDTGKIV 142 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~--g~~~~~~~~~v~~d~~g~~~ 142 (157)
.-++||-.+++++..+... ..++...+....+++|.+|+.+||+++++.++... ++..+.++++++ |++|+++
T Consensus 58 ~~IahG~l~~s~~~~l~~~----~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~-nq~G~~V 132 (466)
T PRK08190 58 HVVAHGMWGGALISAVLGT----RLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCT-NQDGEVV 132 (466)
T ss_pred CceeCHHHHHHHHHHHHhh----hCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEE-eCCCCEE
Confidence 3459998888877543322 11222345677899999999999999999999754 556788888999 5999999
Q ss_pred EEEEEEEEEecC
Q 031596 143 AQGRHTKYLAIS 154 (157)
Q Consensus 143 a~a~~~~~i~~~ 154 (157)
.+++.+++...+
T Consensus 133 ~~g~~~~l~~~~ 144 (466)
T PRK08190 133 ITGTAEVIAPTE 144 (466)
T ss_pred EEEEEEeecccc
Confidence 999998776544
No 57
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=98.02 E-value=0.001 Score=45.87 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred EEEEEEcCCCCC------CCCCcccHHHHHHHHHHHHHHhHHhhC----CC---c-eeEEEEEEEEEeecCCCCC-eEEE
Q 031596 51 VICSMKVPPRLL------NAGNFMHGGATATLVDLVGSAAIFTVG----AP---S-VGVSVEINVSYLDAAFGGE-EIEI 115 (157)
Q Consensus 51 v~~~~~~~~~~~------n~~g~vhGG~~~~l~D~~~~~~~~~~~----~~---~-~~vt~~l~i~f~~p~~~g~-~~~~ 115 (157)
++.+..+.+.+. .....+-|-++...+-.+++..+.... .. . .....--+++|.+|+.+|+ .+++
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~ 106 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRI 106 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEE
Confidence 787777776654 234557777777565555554444331 11 1 2234455799999999999 9999
Q ss_pred EEEEEE---ecCcEEEEEEEEEECCCCcEEEEEE
Q 031596 116 EAKVLR---VGKAVAVVSVELRKKDTGKIVAQGR 146 (157)
Q Consensus 116 ~~~v~~---~g~~~~~~~~~v~~d~~g~~~a~a~ 146 (157)
++++.+ ..+....++++++ .+|++++++.
T Consensus 107 ~v~i~~~~~~~~~~~~~~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 107 EVEIKKIRRREGGMAIFDGTAY--VDGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE--ETTEEEEEEE
T ss_pred EEEEEEeecccCCEEEEEEEEE--ECCEEEEEEC
Confidence 999999 8999999999999 6899999874
No 58
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.02 E-value=0.00031 Score=46.29 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=70.0
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCC-----ceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCC
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAP-----SVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTG 139 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~-----~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g 139 (157)
.-.+|-..++-+.|............. ....+++-++.|++|....+.+..+.+..+.+......+++++ +++|
T Consensus 14 d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~-~~~G 92 (104)
T cd03444 14 DPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIF-TRDG 92 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEE-CCCC
Confidence 446899999999998876555443321 3568999999999999887899999999999999999999999 6999
Q ss_pred cEEEEEEEEE
Q 031596 140 KIVAQGRHTK 149 (157)
Q Consensus 140 ~~~a~a~~~~ 149 (157)
+++|+.....
T Consensus 93 ~LvAs~~Q~~ 102 (104)
T cd03444 93 ELVASVAQEG 102 (104)
T ss_pred CEEEEEEEee
Confidence 9999987653
No 59
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.97 E-value=0.00077 Score=51.56 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhC--------------CCceeEEEEEEEEEeecCCCCCeEEEEE
Q 031596 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------------APSVGVSVEINVSYLDAAFGGEEIEIEA 117 (157)
Q Consensus 52 ~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~--------------~~~~~vt~~l~i~f~~p~~~g~~~~~~~ 117 (157)
.-.+.+....++..|.+.-..++.++-++++..+...+ .+...+.....+++.++...|+.|++++
T Consensus 5 ~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~T 84 (261)
T PF01643_consen 5 EKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIET 84 (261)
T ss_dssp EEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEE
T ss_pred EEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEE
Confidence 45678888999999999999999999998887765443 1234678889999999999999999999
Q ss_pred EEEEecCcEEEEEEEEEEC-CCCcEEEEEEEEEEEecCC
Q 031596 118 KVLRVGKAVAVVSVELRKK-DTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 118 ~v~~~g~~~~~~~~~v~~d-~~g~~~a~a~~~~~i~~~~ 155 (157)
++...++-.+.=+..++ | ++|+++++|+..+++++..
T Consensus 85 w~~~~~~~~~~R~f~i~-d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIY-DAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp EEEEE-SSEEEEEEEEE---TTS-EEEEEEEEEEEEETT
T ss_pred EeccCCCcEEEEEEEEE-ECCCCcEEEEEEEEEEEEEhh
Confidence 99999999999999999 6 8999999999999988764
No 60
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.72 E-value=0.007 Score=42.42 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=49.9
Q ss_pred EEEEEEEEEeecCCCCCeEEEEEEEEEec-CcEEEEEEEEEECCCCcEEEEEEEEEEEecC
Q 031596 95 VSVEINVSYLDAAFGGEEIEIEAKVLRVG-KAVAVVSVELRKKDTGKIVAQGRHTKYLAIS 154 (157)
Q Consensus 95 vt~~l~i~f~~p~~~g~~~~~~~~v~~~g-~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~ 154 (157)
++++ +++|.+|+.+|+.+.++.++.+.. +......++.. .+|+++++|+..++....
T Consensus 89 ~gid-~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~--Vdg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 89 LGID-NAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVAT--VDGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEec-ceeecCccCCCCEEEEEEEEEEecccceEEEEEEEE--ECCEEEEEEEEEEEEeec
Confidence 3444 899999999999999999999999 88888888888 799999999999988754
No 61
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.70 E-value=0.0078 Score=42.33 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=71.0
Q ss_pred eEEEEEEcCCCCC--C----CCCcccHHHHHHHHHHHHHHhHHhhCC-------Ccee-EEEEEEEEEeecCCCCC-eEE
Q 031596 50 RVICSMKVPPRLL--N----AGNFMHGGATATLVDLVGSAAIFTVGA-------PSVG-VSVEINVSYLDAAFGGE-EIE 114 (157)
Q Consensus 50 ~v~~~~~~~~~~~--n----~~g~vhGG~~~~l~D~~~~~~~~~~~~-------~~~~-vt~~l~i~f~~p~~~g~-~~~ 114 (157)
+++....+++++. . ....+-|-.+...+-.+++..+...+. .... ....-+++|.+|+.+|+ .++
T Consensus 28 ~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l~ 107 (150)
T cd01287 28 YLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKVT 107 (150)
T ss_pred EEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEEE
Confidence 6777777776542 3 355677777777777665554432221 1112 22334799999999998 899
Q ss_pred EEEEEEEecC----cEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 115 IEAKVLRVGK----AVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 115 ~~~~v~~~g~----~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
+++++.+.++ ..+.+++.++ .+|+++++++..-+.
T Consensus 108 ~e~~i~~~~~~~~~~~~~~~~~~~--vdg~~v~~a~~~~~~ 146 (150)
T cd01287 108 YEVHIKEVGRDGPRPYIIADASLW--VDGLRIYEAKDIAVR 146 (150)
T ss_pred EEEEEEEEEccCCccEEEEEEEEE--ECCEEEEEEEccEEE
Confidence 9999999874 9999999999 699999999876443
No 62
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=97.69 E-value=0.0011 Score=46.56 Aligned_cols=86 Identities=14% Similarity=0.046 Sum_probs=57.2
Q ss_pred CcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe---cC--cEEEEEEEEEECCCCc
Q 031596 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV---GK--AVAVVSVELRKKDTGK 140 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~---g~--~~~~~~~~v~~d~~g~ 140 (157)
-++||...++++......................+++|++|+.+||.|+++.++... .+ ..++.++++.-....+
T Consensus 57 ~Ia~G~~t~sl~~~l~~~~~~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (149)
T cd03450 57 TIAHGFLTLSLLPALTPQLFRVEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDK 136 (149)
T ss_pred eEECHHHHHHHHHHHHHhcccCCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCC
Confidence 358999998888765433221111100112234589999999999999999999853 12 3667777776546778
Q ss_pred EEEEEEEEEEE
Q 031596 141 IVAQGRHTKYL 151 (157)
Q Consensus 141 ~~a~a~~~~~i 151 (157)
+++.++-..+.
T Consensus 137 p~~~~~~~~~~ 147 (149)
T cd03450 137 PACVAEWISRL 147 (149)
T ss_pred ceEEEEEEEee
Confidence 88888877554
No 63
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=97.58 E-value=0.0018 Score=43.95 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~ 144 (157)
.-++||-..++++..+.... ...+........+++|.+|+.+|++++++.+. .++ .+.+++.+. ++|+++.+
T Consensus 44 ~~iahG~~t~a~~~~~~~~~---~~~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~--~~g~~v~~ 115 (122)
T cd03448 44 RPILHGLCTYGFAARAVLEA---FADGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVV--ERDVVVLS 115 (122)
T ss_pred CceehhHHHHHHHHHHHHHH---hcCCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEc--cCCcEEEE
Confidence 35599998888877554222 11222344567799999999999999998874 444 667777776 46776555
Q ss_pred EE
Q 031596 145 GR 146 (157)
Q Consensus 145 a~ 146 (157)
+.
T Consensus 116 g~ 117 (122)
T cd03448 116 NG 117 (122)
T ss_pred CC
Confidence 43
No 64
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.56 E-value=0.0013 Score=50.63 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=82.3
Q ss_pred EEEEecCCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEE
Q 031596 42 RVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLR 121 (157)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~ 121 (157)
+++.++++....+-..... .++.+.++||.+++-+=.++. .+... ..+.-+++..|++...+..+|.-..+-+|
T Consensus 15 ~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQaLaAA~---~TV~e--~f~p~SlH~YFI~~gd~~~pI~Y~V~rir 88 (294)
T KOG3016|consen 15 NLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQALAAAS---KTVEE--MFIPHSLHCYFILVGDPNIPIIYDVKRIR 88 (294)
T ss_pred eeeecCCCceecccCCccc-cccCcccccceehHHHHHHHH---hcccc--ccccceeeeeeeecCCCCCceEEEeeeec
Confidence 4567777754444433222 267888999988876655542 33332 45778999999999999999999999999
Q ss_pred ecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCCC
Q 031596 122 VGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISSK 156 (157)
Q Consensus 122 ~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~~ 156 (157)
-||+..+=.++.+ ++|+++..+..+|-...++.
T Consensus 89 dGr~F~~R~V~Av--Q~~k~If~~qiSF~~~~ks~ 121 (294)
T KOG3016|consen 89 DGRNFATRSVDAV--QKGKTIFTLQISFQQSEKSS 121 (294)
T ss_pred CCceeEEEEEEEE--ECCeEEEEEEEEEccccCCC
Confidence 9999999999999 89999999999998666554
No 65
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.56 E-value=0.0023 Score=49.02 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=66.9
Q ss_pred CcccHHHHHHHHHHHHH-HhHHhhCC----CceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCc
Q 031596 66 NFMHGGATATLVDLVGS-AAIFTVGA----PSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGK 140 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~-~~~~~~~~----~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~ 140 (157)
-..|-..++.++|.... .++..+.. .....+++.+++|+++.+.++.+..+++....+......+++++ |.+|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~-d~~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIF-TRDGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEE-CCCCC
Confidence 45678899999998432 33332221 13357899999999998889999999999999999999999999 79999
Q ss_pred EEEEEEEEEEE
Q 031596 141 IVAQGRHTKYL 151 (157)
Q Consensus 141 ~~a~a~~~~~i 151 (157)
++|+..-.-++
T Consensus 260 lvAs~~Qe~l~ 270 (271)
T TIGR00189 260 LIASTVQEGLV 270 (271)
T ss_pred EEEEEEeeeec
Confidence 99998866443
No 66
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=97.47 E-value=0.0058 Score=42.50 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCC-C----eEEEEEEEEEe--cCcEEEEEEEEEECC
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG-E----EIEIEAKVLRV--GKAVAVVSVELRKKD 137 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g-~----~~~~~~~v~~~--g~~~~~~~~~v~~d~ 137 (157)
.-++||...++++-.+.... ...+ ....+++++|.+|+..| | .+++++++... ++..+.+++.+.| +
T Consensus 54 ~~iahG~~~~a~~~~~~~~~---~~~~--~~~~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~-~ 127 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTSW---VGDP--GAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATT-G 127 (142)
T ss_pred CcEecHHHHHHHHHHHHHHh---cCCC--cceEEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEE-C
Confidence 45699999999887654321 1211 12247899999999854 3 89999999854 5667888888884 6
Q ss_pred CCcEEEEEEEEEE
Q 031596 138 TGKIVAQGRHTKY 150 (157)
Q Consensus 138 ~g~~~a~a~~~~~ 150 (157)
+++.+..|++.+.
T Consensus 128 ~~~~~~~~~~~~~ 140 (142)
T PRK13693 128 GKKIFGRAIASAK 140 (142)
T ss_pred CcEEEEEEEEEEE
Confidence 6666666666543
No 67
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=97.47 E-value=0.0036 Score=44.37 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHHHhHHhhCCCce-eEEEEEEEEEeecCCCCCeEEEEEEEEEec----CcEEEEEEEEEECCCCcE
Q 031596 67 FMHGGATATLVDLVGSAAIFTVGAPSV-GVSVEINVSYLDAAFGGEEIEIEAKVLRVG----KAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 67 ~vhGG~~~~l~D~~~~~~~~~~~~~~~-~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g----~~~~~~~~~v~~d~~g~~ 141 (157)
++||-..++++=-+.... ...+.. .-..--+++|.+|+.+||.++++.++.... +..+.++.+.+ +++|+.
T Consensus 69 iahG~~t~a~~~~~~~~~---~~~~~~~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~-~~~g~~ 144 (159)
T COG2030 69 IAHGMLTLALAMGLVVAA---LGDPSVGANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETV-NQEGEL 144 (159)
T ss_pred ehhHHHHHHHHHHHHHHh---ccCcceeeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEE-ccCCcE
Confidence 467766666654322221 111111 123344799999999999999999998543 37788899999 599999
Q ss_pred EEEEEEEEEEecC
Q 031596 142 VAQGRHTKYLAIS 154 (157)
Q Consensus 142 ~a~a~~~~~i~~~ 154 (157)
+.....+..+...
T Consensus 145 v~~~~~~~~~~~~ 157 (159)
T COG2030 145 VLTLEATVLVLRR 157 (159)
T ss_pred EEEEEEeEeEeec
Confidence 9999988777644
No 68
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.41 E-value=0.0017 Score=49.04 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhHHhhCCC--ceeEEEEEEEEE-eecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 72 ATATLVDLVGSAAIFTVGAP--SVGVSVEINVSY-LDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 72 ~~~~l~D~~~~~~~~~~~~~--~~~vt~~l~i~f-~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
.++.++|............. ....|++++++| ..|...++.+.++++....+......+++|+ |++|+++|.+...
T Consensus 174 ~l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~-d~~G~lvA~~~Q~ 252 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLW-DEDGRLVASSRQE 252 (255)
T ss_dssp HHHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEE-ETTS-EEEEEEEE
T ss_pred HHHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEE-CCCCCEEEEEEEE
Confidence 48888887743333333322 345699999997 4465557899999999999999999999999 5999999999887
Q ss_pred EEE
Q 031596 149 KYL 151 (157)
Q Consensus 149 ~~i 151 (157)
.++
T Consensus 253 ~lv 255 (255)
T PF13622_consen 253 ALV 255 (255)
T ss_dssp EE-
T ss_pred eeC
Confidence 653
No 69
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=97.41 E-value=0.0013 Score=44.43 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELR 134 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~ 134 (157)
.-++||..+++++........ ..........++++|.+|+.+|+++.++.++.......-...+++.
T Consensus 50 ~~ivhG~~~~a~~~~~~~~~~---~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 50 GPIVHGMLTLALASGLLGDWL---GPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVT 116 (122)
T ss_dssp SSB-BHHHHHHHHHHHHHHHH---STTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CEEEccHHHHHHHHHHHHHhc---cCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEE
Confidence 557999999988875444332 2223467788999999999999999999999865444444444333
No 70
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=97.23 E-value=0.04 Score=39.54 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=65.3
Q ss_pred eEEEEEEcCCCCC---C---CCCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEEeecCCCCCeE-EEEEEEEE
Q 031596 50 RVICSMKVPPRLL---N---AGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEEI-EIEAKVLR 121 (157)
Q Consensus 50 ~v~~~~~~~~~~~---n---~~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f~~p~~~g~~~-~~~~~v~~ 121 (157)
+++.+..++++.. + ....+-|=.+...+-.+++..+.... .........-+++|.+|+.+|+.+ +.+.++.+
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~ 130 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKR 130 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEE
Confidence 6888888877643 2 23346666666666665554433222 111122222389999999999886 88888887
Q ss_pred e---cCcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 122 V---GKAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 122 ~---g~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
. .+....++|+++ .+|+++++|+..
T Consensus 131 ~~~~~~~~~~~~~~i~--v~g~~va~a~~~ 158 (169)
T TIGR01749 131 VINRRLVMGIADGEVL--VDGRLIYTASDL 158 (169)
T ss_pred EeecCCcEEEEEEEEE--ECCEEEEEEECC
Confidence 5 456899999999 789999997654
No 71
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.18 E-value=0.013 Score=45.52 Aligned_cols=87 Identities=14% Similarity=-0.005 Sum_probs=69.0
Q ss_pred CcccHHHHHHHHHHHHH-HhHHhhCC-----CceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCC
Q 031596 66 NFMHGGATATLVDLVGS-AAIFTVGA-----PSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTG 139 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~-~~~~~~~~-----~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g 139 (157)
..+|-.+++-+.|..+. .++..++. .....+++-++.|++|.+.++.+..+.+....+....+.++++| +.+|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~-~~~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFY-TQDG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEE-CCCC
Confidence 45888888888885433 33333321 23456888889999999999999999999999999999999999 6999
Q ss_pred cEEEEEEEEEEEec
Q 031596 140 KIVAQGRHTKYLAI 153 (157)
Q Consensus 140 ~~~a~a~~~~~i~~ 153 (157)
+++|++.-.-++..
T Consensus 271 ~LvAs~~Qegl~r~ 284 (286)
T PRK10526 271 VLVASTVQEGVMRN 284 (286)
T ss_pred CEEEEEEeeEEEEe
Confidence 99999988766553
No 72
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=97.17 E-value=0.0024 Score=43.41 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceeEEEEEEEEEeecCCCCCeEEEEEEEEEecC-------cEEEEEEEEEECCCCcEEEE
Q 031596 92 SVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGK-------AVAVVSVELRKKDTGKIVAQ 144 (157)
Q Consensus 92 ~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~-------~~~~~~~~v~~d~~g~~~a~ 144 (157)
...+-.+.++.|++|+++|+.+++++++..... ..+.++.+++ |++|+++++
T Consensus 73 ~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~-~~~Ge~v~t 131 (132)
T PF13452_consen 73 TRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYT-DQDGELVAT 131 (132)
T ss_dssp GGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred hhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEE-CCCCCEEEe
Confidence 345777899999999999999999999974332 2345677788 699999975
No 73
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=97.15 E-value=0.0016 Score=50.09 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 64 ~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
..-.++||-+.+-+=.++.. ++... -+.-++...|++|....+++....+.+|-||+....+++.+ ++|+++.
T Consensus 30 g~~~vFGGqvvaQAL~Aa~~---TV~~~--r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~ai--Q~g~~If 102 (289)
T COG1946 30 GLRRVFGGQVVAQALVAALR---TVPED--RVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAI--QHGKLIF 102 (289)
T ss_pred CCccccccchHHHHHHHHHh---hcCCC--CCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEE--ECCEEEE
Confidence 45568999888776544433 33322 25567888999999999999999999999999999999999 8999999
Q ss_pred EEEEEEEEecC
Q 031596 144 QGRHTKYLAIS 154 (157)
Q Consensus 144 ~a~~~~~i~~~ 154 (157)
.++++|.+.+.
T Consensus 103 ~~~ASF~~~e~ 113 (289)
T COG1946 103 SATASFQVPEE 113 (289)
T ss_pred EEEeeccCCCC
Confidence 99999987543
No 74
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=97.11 E-value=0.0037 Score=53.92 Aligned_cols=94 Identities=16% Similarity=0.048 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCC---------CCcccHHHHHHHHHHHHHHhHHhhCCCceeE-EEEEEEEEeecCCCCCeEEEEEEEEEe
Q 031596 53 CSMKVPPRLLNA---------GNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVEINVSYLDAAFGGEEIEIEAKVLRV 122 (157)
Q Consensus 53 ~~~~~~~~~~n~---------~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~v-t~~l~i~f~~p~~~g~~~~~~~~v~~~ 122 (157)
+..+..|-|.|. .-++||-..++++...... ...+.... ....+++|++|+.+||+|+++.++...
T Consensus 552 ~sgD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~~----~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~ 627 (663)
T TIGR02278 552 LSGDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFVD----PAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRK 627 (663)
T ss_pred hhCCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhhc----cCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEE
Confidence 445667777663 2368999988888543311 11111111 122489999999999999999999854
Q ss_pred c------CcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 123 G------KAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 123 g------~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
. ...+.++++++ +++|+++.+++...++
T Consensus 628 ~~~~~~~~g~v~~~~~v~-nq~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 628 TPRDEKTYGVVEWAAEVV-NQNGEPVATYDVLTLV 661 (663)
T ss_pred EecCCCCceEEEEEEEEE-cCCCCEEEEEEEHHhc
Confidence 2 12688999999 5999999999887654
No 75
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=97.05 E-value=0.064 Score=38.59 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=66.3
Q ss_pred eEEEEEEcCCCCC---CC---CCcccHHHHHHHHHHHHHHhHHhhC-CCceeEEEEEEEEEeecCCCCCe-EEEEEEEEE
Q 031596 50 RVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGEE-IEIEAKVLR 121 (157)
Q Consensus 50 ~v~~~~~~~~~~~---n~---~g~vhGG~~~~l~D~~~~~~~~~~~-~~~~~vt~~l~i~f~~p~~~g~~-~~~~~~v~~ 121 (157)
+++.+..++++.. +| ...+-|=.+...+-.+++..+.... .....+...-+++|.+++.+|+. ++.+.++.+
T Consensus 54 ~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~ 133 (172)
T PRK05174 54 YIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKR 133 (172)
T ss_pred EEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEE
Confidence 6888888887653 22 3346666666666655554433212 11112333447999999999987 899999888
Q ss_pred e---cCcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 122 V---GKAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 122 ~---g~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
. .+....++++++ .+|+++++|+..
T Consensus 134 ~~~~~~~~~~~~~~i~--v~g~~va~a~~~ 161 (172)
T PRK05174 134 VINRKLVMGIADGRVL--VDGEEIYTAKDL 161 (172)
T ss_pred EecCCCCEEEEEEEEE--ECCEEEEEEEee
Confidence 6 467899999999 689999999543
No 76
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.04 E-value=0.014 Score=46.38 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=77.0
Q ss_pred cCCCCCCCCCcccHH-HHHHHHHHHHHHhHHhhC------C--CceeEEEEEE-EEEeecCCCC-CeEEEEEEEEEecCc
Q 031596 57 VPPRLLNAGNFMHGG-ATATLVDLVGSAAIFTVG------A--PSVGVSVEIN-VSYLDAAFGG-EEIEIEAKVLRVGKA 125 (157)
Q Consensus 57 ~~~~~~n~~g~vhGG-~~~~l~D~~~~~~~~~~~------~--~~~~vt~~l~-i~f~~p~~~g-~~~~~~~~v~~~g~~ 125 (157)
..|.+.|+.|..++| -+.-|+|++...+.+.+. . +...||+... |+|.+|...| .++.+.+.|...|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 556777899999999 599999988766654321 1 2456788776 8999988777 578888999999999
Q ss_pred EEEEEEEEEE--C--CCCcEEEEEEEEEEEecCC
Q 031596 126 VAVVSVELRK--K--DTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 126 ~~~~~~~v~~--d--~~g~~~a~a~~~~~i~~~~ 155 (157)
++.+...|.+ . ..-.++.+|..+|+..++.
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard~~ 128 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVARDAT 128 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEecCC
Confidence 9999999984 1 2456889999999887543
No 77
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=97.03 E-value=0.0066 Score=46.81 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=70.3
Q ss_pred CCcccHHHHHHHHHHHHHHhH-HhhC-----CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCC
Q 031596 65 GNFMHGGATATLVDLVGSAAI-FTVG-----APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDT 138 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~-~~~~-----~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~ 138 (157)
.-.+|--.++-+-|......+ ..++ ++...++++=++.|++|.+.++.+....+.-........++++++ +++
T Consensus 191 d~~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf-~r~ 269 (289)
T COG1946 191 DPRLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLF-DRD 269 (289)
T ss_pred CHHHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEE-cCC
Confidence 345777777777776544333 3333 244568888889999999999999999999999999999999999 699
Q ss_pred CcEEEEEEEEEEEecC
Q 031596 139 GKIVAQGRHTKYLAIS 154 (157)
Q Consensus 139 g~~~a~a~~~~~i~~~ 154 (157)
|+++|...-..++...
T Consensus 270 G~LiA~~~QEG~~r~~ 285 (289)
T COG1946 270 GQLIASVVQEGLIRYH 285 (289)
T ss_pred CCEEEEEeeeEEEecc
Confidence 9999998877666544
No 78
>PLN02864 enoyl-CoA hydratase
Probab=96.84 E-value=0.031 Score=43.90 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=59.8
Q ss_pred EEEEcCCCCCCC---------CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEec
Q 031596 53 CSMKVPPRLLNA---------GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVG 123 (157)
Q Consensus 53 ~~~~~~~~~~n~---------~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g 123 (157)
+..+.+|-|.|. .-++||-+.++++-.+..... ..+......+++++|.+|+.+|+.+.++.+. .
T Consensus 206 lSGD~NPiH~d~~~A~~~gf~~~IaHGm~t~g~~~~~~~~~~---~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~- 279 (310)
T PLN02864 206 LSGDYNPLHSDPMFAKVAGFTRPILHGLCTLGFAVRAVIKCF---CNGDPTAVKTISGRFLLHVYPGETLVTEMWL--E- 279 (310)
T ss_pred hhCCCCcccCCHHHHhhCCCCCceeccHHHHHHHHHHHHhhh---cCCCCceEEEEEEEEcCCccCCCEEEEEEEe--C-
Confidence 445666666664 455999888877665432221 1111234467899999999999999776653 3
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031596 124 KAVAVVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 124 ~~~~~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
+..+.+++.+. ++|+++..+..+..
T Consensus 280 ~~~v~~~~~~~--~~g~~vl~G~a~~~ 304 (310)
T PLN02864 280 GLRVIYQTKVK--ERNKAVLSGYVDLR 304 (310)
T ss_pred CCEEEEEEEEe--cCCeEEEEEEEEEe
Confidence 44567777764 67888888887754
No 79
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=96.77 E-value=0.016 Score=39.63 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=59.0
Q ss_pred cccHHHHHHHHHHHHHHhH-HhhC--CCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 67 FMHGGATATLVDLVGSAAI-FTVG--APSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 67 ~vhGG~~~~l~D~~~~~~~-~~~~--~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
.+|--+++-+.|.....++ ..++ .....+|++=++.|++|.+.++.+....+--+....+..++++++++++|+++|
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q~G~Lva 124 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQDGELVA 124 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEECTTEEEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecCCCCEEE
Confidence 4676777777775433332 2222 234456888889999999999999999999999999999999999559999999
Q ss_pred EEEE
Q 031596 144 QGRH 147 (157)
Q Consensus 144 ~a~~ 147 (157)
+...
T Consensus 125 s~~Q 128 (131)
T PF02551_consen 125 SVVQ 128 (131)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8754
No 80
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=96.73 E-value=0.01 Score=51.29 Aligned_cols=94 Identities=17% Similarity=0.110 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCC---------CCcccHHHHHHHHHHHHHHhHHhhCCCceeEE-EEEEEEEeecCCCCCeEEEEEEEEEe
Q 031596 53 CSMKVPPRLLNA---------GNFMHGGATATLVDLVGSAAIFTVGAPSVGVS-VEINVSYLDAAFGGEEIEIEAKVLRV 122 (157)
Q Consensus 53 ~~~~~~~~~~n~---------~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt-~~l~i~f~~p~~~g~~~~~~~~v~~~ 122 (157)
+..+..|-|.+. .-++||-..++++-..... ..+...... ..-+++|.+|+..||+|+++.+|...
T Consensus 564 lsgD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~~----~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~ 639 (675)
T PRK11563 564 LSGDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFVD----PAPGPVLANYGLENLRFLTPVKPGDTIQVRLTCKRK 639 (675)
T ss_pred hhCCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhhc----cCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEE
Confidence 345666777763 2358888887776653311 011111111 11279999999999999999999865
Q ss_pred c------CcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 123 G------KAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 123 g------~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
. +..+.++++++ +++|+++.+++...++
T Consensus 640 ~~~~~~~~~~v~~~~~~~-nq~G~~V~~~~~~~lv 673 (675)
T PRK11563 640 TPRRQAPYGVVRWDVEVT-NQDGELVATYDILTLV 673 (675)
T ss_pred EecCCCCceEEEEEEEEE-ECCCCEEEEEEEHHhc
Confidence 2 13688999999 5999999999887654
No 81
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=96.64 E-value=0.11 Score=35.33 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred CCeEEEEEEcCCCC--C-CC-CCcccHHHHHHHHHHHHHHhHHhhC---CCceeEEEEEEEEEeecCCCCCeEEEEEEEE
Q 031596 48 PGRVICSMKVPPRL--L-NA-GNFMHGGATATLVDLVGSAAIFTVG---APSVGVSVEINVSYLDAAFGGEEIEIEAKVL 120 (157)
Q Consensus 48 ~~~v~~~~~~~~~~--~-n~-~g~vhGG~~~~l~D~~~~~~~~~~~---~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~ 120 (157)
++...+.+.+...| . ++ .+.+.|-.++..+=.++........ .+...+..+++++|.+++....++.++.++.
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~ 98 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRIT 98 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEE
Confidence 45444444444332 2 33 3345555555555554444333221 2345688899999999998888888888887
Q ss_pred EecC-----cEEEEEEEEEECCCCcEEEEEEEEEE
Q 031596 121 RVGK-----AVAVVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 121 ~~g~-----~~~~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
.... +...++++++ ++|+++++++.++-
T Consensus 99 ~~~~~~~~~~~~~~~v~~~--q~g~~~a~~~~~~t 131 (132)
T PF03756_consen 99 CRDRRGGRPRGLRFRVTVS--QGGRVVATASMTFT 131 (132)
T ss_pred eccccCCccceEEEEEEEE--ECCEEEEEEEEEEE
Confidence 5444 4778999999 79999999998863
No 82
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.53 E-value=0.024 Score=46.13 Aligned_cols=82 Identities=9% Similarity=0.027 Sum_probs=65.6
Q ss_pred CcccHHHHHHHHHHHHHHhHH-hhC-C--CceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcE
Q 031596 66 NFMHGGATATLVDLVGSAAIF-TVG-A--PSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 66 g~vhGG~~~~l~D~~~~~~~~-~~~-~--~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~ 141 (157)
-.+|-.+++.+.|......+. .+. . +....+++-++.|++|++.++.+..+.+....+......++++| +.+|++
T Consensus 325 ~~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~-~~~G~L 403 (413)
T PLN02868 325 QALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMF-NRKGEL 403 (413)
T ss_pred HHHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEE-CCCCCE
Confidence 457888999999966544432 221 1 12356888899999999999999999999999999999999999 699999
Q ss_pred EEEEEEE
Q 031596 142 VAQGRHT 148 (157)
Q Consensus 142 ~a~a~~~ 148 (157)
+|+..--
T Consensus 404 vAs~~Qe 410 (413)
T PLN02868 404 VVSLTQE 410 (413)
T ss_pred EEEEEee
Confidence 9988654
No 83
>PLN02864 enoyl-CoA hydratase
Probab=96.08 E-value=0.064 Score=42.18 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=47.5
Q ss_pred eeEEEEEEEEEeecCCCCCeEEEEEEEEEe---cCc-EEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 93 VGVSVEINVSYLDAAFGGEEIEIEAKVLRV---GKA-VAVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 93 ~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~---g~~-~~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
..+=.+-++.+++|++.++.+++++++... |+. .+.++..+++.++|+++++.+.++++..
T Consensus 93 ~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg 157 (310)
T PLN02864 93 LLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRG 157 (310)
T ss_pred heeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeC
Confidence 345566789999999999999999999755 322 2567777774469999999999988764
No 84
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=95.99 E-value=0.14 Score=39.20 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=67.7
Q ss_pred CCeEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEe-cCcE
Q 031596 48 PGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRV-GKAV 126 (157)
Q Consensus 48 ~~~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~-g~~~ 126 (157)
+......+.++....+.+|.|+...+..|+-++....... .....+++|+|.+.+..|+.+.+.+.+... +...
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~-----~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~ 237 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE-----KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDG 237 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC-----CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc-----cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCc
Confidence 3456788899999999999999999999998765544322 124578999999999999999998887543 4455
Q ss_pred EEEEEEEEECCCCcEEEEEEEEEE
Q 031596 127 AVVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 127 ~~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
....-.+.+ .+|+.+|.+...+.
T Consensus 238 ~~~~h~i~~-~~g~~~~~~~~~W~ 260 (261)
T PF01643_consen 238 LSTLHEIRN-EDGEEVARARTEWQ 260 (261)
T ss_dssp EEEEEEEEC-T-TCEEEEEEEEEE
T ss_pred eEEEEEEEc-CCCceEEEEEEEEc
Confidence 677777883 55999999988763
No 85
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=95.00 E-value=0.23 Score=38.44 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=64.2
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhh----CCCceeEEEEEEEEEeec-CCCCCeEEEEEEEEEecCcEEEEEEEEEECCCC
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTV----GAPSVGVSVEINVSYLDA-AFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTG 139 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~----~~~~~~vt~~l~i~f~~p-~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g 139 (157)
.-..|--+++.+.|..+..++... +.....++.+=+|.|+++ ++.++.+.-++.....+.++.+++++++ +++|
T Consensus 207 D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw-~rdG 285 (294)
T KOG3016|consen 207 DERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLW-NRDG 285 (294)
T ss_pred hhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEE-ccCC
Confidence 666888899999998766554322 123345666767999998 7899999999999999999999999999 5999
Q ss_pred cEEEEE
Q 031596 140 KIVAQG 145 (157)
Q Consensus 140 ~~~a~a 145 (157)
++++..
T Consensus 286 ~l~~s~ 291 (294)
T KOG3016|consen 286 RLICST 291 (294)
T ss_pred cEEEEe
Confidence 998864
No 86
>PLN02370 acyl-ACP thioesterase
Probab=93.99 E-value=1.1 Score=36.70 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=68.9
Q ss_pred eEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEE-----Ee-c
Q 031596 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVL-----RV-G 123 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~-----~~-g 123 (157)
.....+.++...++.+|.|+...+..|+-+++-.-.... -...+++|+|.+.+..|+.|...+... .. +
T Consensus 301 ~~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~~-----~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~ 375 (419)
T PLN02370 301 YIRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIMES-----HELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGT 375 (419)
T ss_pred ceeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhhc-----ceEEEEEEEEcccCCCCCEEEEEEeecccccccccC
Confidence 344568899999999999999999999877655433221 145789999999999999998876642 11 1
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 124 KAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 124 ~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
.....+...+. +++|+.++.++..+.-.
T Consensus 376 ~~~~~~~h~~~-~~dG~e~a~a~t~Wr~~ 403 (419)
T PLN02370 376 AGDVECQHLLR-LEDGAEIVRGRTEWRPK 403 (419)
T ss_pred CCcceEEEEEE-cCCCeEEEEEEEEEEEC
Confidence 11122333444 58999999999987644
No 87
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=93.92 E-value=2.2 Score=32.55 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=63.8
Q ss_pred CeEEEEEEcCCCCCC--CCCcccHHHHHHHHHHHHHHhHH--h--hCCCceeEEEEE-EEEEee-cCCCCCeEEEEEEEE
Q 031596 49 GRVICSMKVPPRLLN--AGNFMHGGATATLVDLVGSAAIF--T--VGAPSVGVSVEI-NVSYLD-AAFGGEEIEIEAKVL 120 (157)
Q Consensus 49 ~~v~~~~~~~~~~~n--~~g~vhGG~~~~l~D~~~~~~~~--~--~~~~~~~vt~~l-~i~f~~-p~~~g~~~~~~~~v~ 120 (157)
+.+..++.+.+...+ ..-.+|. +++|.++-.... . .......+...+ ++.+.+ |.+.++.+.+.++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P----~llD~~lq~~~~~~~~~~~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHP----ALLDAALQAAGLALWEDDDRGRVFLPVSIERIRIFRAPPPPGDRLYVYARLV 257 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-H----HHHHHHHHGHGCCHTSTTTTTSEEEEEEEEEEEESSS--SSTSEEEEEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECH----HHHHHHHHHHHHHhccccCCCCEEcccEeCEEEEEeccCCCCCEEEEEEEEe
Confidence 767777777754432 2233454 566666552211 1 112333344444 477774 667788999999998
Q ss_pred EecCcEEEEEEEEEECCCCcEEEEEEEEEEE
Q 031596 121 RVGKAVAVVSVELRKKDTGKIVAQGRHTKYL 151 (157)
Q Consensus 121 ~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i 151 (157)
+.+......++.++ |++|++++...+..+.
T Consensus 258 ~~~~~~~~~dv~v~-d~~G~~~~~~~gl~~~ 287 (295)
T PF14765_consen 258 KSDDDTITGDVTVF-DEDGRVVAELEGLTFR 287 (295)
T ss_dssp STTTTEEEEEEEEE-ETTSBEEEEEEEEEEE
T ss_pred cccceEEEEEEEEE-CCCCCEEEEEccEEEE
Confidence 88999999999999 5999999999887554
No 88
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=93.02 E-value=0.24 Score=37.25 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=57.3
Q ss_pred eEEEEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcE
Q 031596 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAV 126 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~ 126 (157)
...-.++++....+..|.++......++.+.++.-+...-.+ ..+++.|.+|+.+|+++++..++...+.+-
T Consensus 152 s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~~~p-----~r~~l~y~keva~G~~iti~~e~~~~~s~~ 223 (250)
T COG3884 152 SEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKLYGP-----LRLTLEYVKEVAPGEKITIVYEVHPLESKH 223 (250)
T ss_pred cccccceeEEEeeccccccccceehHHHHHHHhhhhHhhccc-----ceeEEEEEcccCCCCeEEEEEEEcccCcee
Confidence 344577788778888999999999999999888665544322 678899999999999999999998766543
No 89
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=91.80 E-value=2.9 Score=31.59 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=54.1
Q ss_pred eeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEecCC
Q 031596 93 VGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAISS 155 (157)
Q Consensus 93 ~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~~~ 155 (157)
..+.....+++.+|+..|++++++.+.....+.-+.-++++. + .|..+....+.++.+++.
T Consensus 55 ~WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~-~-~gg~Lie~~a~wilmn~d 115 (250)
T COG3884 55 LWIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLD-G-RGGGLIEIEAFWILMNRD 115 (250)
T ss_pred eEEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEe-c-CCCcEEEEEEEEEEEccc
Confidence 457788899999999999999999999999999999999999 3 777777999998888765
No 90
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=85.59 E-value=8.6 Score=38.76 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=47.0
Q ss_pred EEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEEEEec
Q 031596 100 NVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTKYLAI 153 (157)
Q Consensus 100 ~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~~ 153 (157)
++...+|.+.|+..++..++.+...+.+.+++.++ |++|+++++-.+..+++.
T Consensus 2522 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~-~~~g~~~~~~~~~~~~~~ 2574 (2582)
T TIGR02813 2522 EFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELY-HQDGRLSSEMKSAKVTIS 2574 (2582)
T ss_pred eEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEE-CCCCcEEEEEeCCeEEEC
Confidence 67888888899999999999999999999999999 799999999887666543
No 91
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=68.38 E-value=18 Score=22.94 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=24.7
Q ss_pred EEEEeecCCCCCeEEEEEEEEEecCcEE---EEEEEEEECCCCcEEEEEEEE
Q 031596 100 NVSYLDAAFGGEEIEIEAKVLRVGKAVA---VVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 100 ~i~f~~p~~~g~~~~~~~~v~~~g~~~~---~~~~~v~~d~~g~~~a~a~~~ 148 (157)
+|.-..|.+ |+.+.-.-++ .|+... ++..+|. |.+|++++++..+
T Consensus 2 ~I~V~~P~p-g~~V~sp~~V--~G~A~~FEgtv~~rv~-D~~g~vl~e~~~~ 49 (88)
T PF10648_consen 2 NIWVTAPAP-GDTVSSPVKV--SGKARVFEGTVNIRVR-DGHGEVLAEGFVT 49 (88)
T ss_pred ceEEcCCCC-cCCcCCCEEE--EEEEEEeeeEEEEEEE-cCCCcEEEEeeEE
Confidence 456667765 5443332222 222222 3667777 7899998555443
No 92
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=60.64 E-value=4.8 Score=30.49 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEE
Q 031596 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEA 117 (157)
Q Consensus 65 ~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~ 117 (157)
..++||-+..++.--+++... + +.+-..++++|-+|+-+|+.+....
T Consensus 191 tpilHGlc~lg~~~riv~a~~----~--~a~y~~~kvrF~spV~pGdtll~~~ 237 (272)
T KOG1206|consen 191 TPILHGLCTLGFSARIVGAQF----P--PAVYKAQKVRFSSPVGPGDTLLVLV 237 (272)
T ss_pred CchhhhHHHhhhhHHHHHHhc----C--chhhheeeeeecCCCCCchhHHHHH
Confidence 567999999888876655332 2 3466888999999999998665443
No 93
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=45 Score=25.57 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=57.8
Q ss_pred eEEEEEEcCCCCCCCCCc-ccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCCCCCeEEEEEEEEEecCcEEE
Q 031596 50 RVICSMKVPPRLLNAGNF-MHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGEEIEIEAKVLRVGKAVAV 128 (157)
Q Consensus 50 ~v~~~~~~~~~~~n~~g~-vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~ 128 (157)
++....+.....-|+.|. +||-.+++++-.++-.. .++ ....++.+-++|+-.++++++-++....|+-..+
T Consensus 185 rIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~----~pq---~~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~~w 257 (273)
T COG3777 185 RIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPF----LPQ---PIRRFRFRNLSPAFPNETLTICGSLSGSGGAELW 257 (273)
T ss_pred eeeccCcceeeccCCCCceecchHHHHHHHHHhhhh----ccc---cchheeccccccccCCCCeeEeeEecCCCceEEE
Confidence 444444555555676665 89999999887654422 111 2567788889999999999999998776654332
Q ss_pred EEEEEEECCCCcEEEEEEEE
Q 031596 129 VSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 129 ~~~~v~~d~~g~~~a~a~~~ 148 (157)
. . +.+|.+..+|...
T Consensus 258 ~----~-~~~~pv~mrarV~ 272 (273)
T COG3777 258 T----I-RGDGPVAMRARVF 272 (273)
T ss_pred E----e-cCCcchhheeeec
Confidence 1 2 3666677776643
No 94
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=50.08 E-value=77 Score=21.97 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=34.3
Q ss_pred CCCeEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEEE
Q 031596 109 GGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHTK 149 (157)
Q Consensus 109 ~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~~ 149 (157)
.|..+.+.+++-|...-...+.+.+.+-.+|+++......+
T Consensus 79 ~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 79 LGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred cCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 35678889999999999999999999888999988776653
No 95
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=47.97 E-value=78 Score=22.30 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=57.9
Q ss_pred EEEEecCCeEEEEEEcCCC---CCCCCCcccHHHHHHHHHHHHHHhHH--hhCCCc----eeEE---EEEEEEEeecCCC
Q 031596 42 RVDLSEPGRVICSMKVPPR---LLNAGNFMHGGATATLVDLVGSAAIF--TVGAPS----VGVS---VEINVSYLDAAFG 109 (157)
Q Consensus 42 ~~~~~~~~~v~~~~~~~~~---~~n~~g~vhGG~~~~l~D~~~~~~~~--~~~~~~----~~vt---~~l~i~f~~p~~~ 109 (157)
+++.+++++++++..+.|. .+.+.|.+-+=+-..++-.+.+.... ....+. .++. .++.+ |....+.
T Consensus 27 ~VvtwdDd~~rc~atvsp~~a~~l~~dg~Lpa~~gIElmAQAv~vh~g~l~~rq~~ps~r~GfLlg~Rklea-ha~~l~~ 105 (161)
T COG4706 27 DVVTWDDDSARCRATVSPSGAPFLDPDGNLPAWFGIELMAQAVGVHSGWLRHRQGKPSIRLGFLLGARKLEA-HAGILPA 105 (161)
T ss_pred eeeeecCCeEEEEeEeCCCCCCccCcCCCcchhhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeeeeeeee-eccccCC
Confidence 4677899999999988876 55778887777777777766554433 122222 1221 22222 1222244
Q ss_pred CCeEEE-EEEEEEecCcEEEEEEEEEECCCCcEEE
Q 031596 110 GEEIEI-EAKVLRVGKAVAVVSVELRKKDTGKIVA 143 (157)
Q Consensus 110 g~~~~~-~~~v~~~g~~~~~~~~~v~~d~~g~~~a 143 (157)
|+.+.+ +.+.++-.+....++|+|. .+|+...
T Consensus 106 ~q~ll~t~~e~iqddgg~g~f~csir--~d~~~~~ 138 (161)
T COG4706 106 GQTLLITVKELIQDDGGFGSFECSIR--NDGEATG 138 (161)
T ss_pred ccchHHHHHHHhccCCCceEEEEEEc--cCchhhc
Confidence 544433 3344455666888999998 4555544
No 96
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=47.19 E-value=44 Score=20.62 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=21.8
Q ss_pred eeEEEEEEEEEeecCCCCCeEEEEEE
Q 031596 93 VGVSVEINVSYLDAAFGGEEIEIEAK 118 (157)
Q Consensus 93 ~~vt~~l~i~f~~p~~~g~~~~~~~~ 118 (157)
.++....++.++.++++||.+.+++-
T Consensus 22 ~G~~~~v~l~lv~~~~vGD~VLVH~G 47 (76)
T TIGR00074 22 CGIKRDVSLDLVGEVKVGDYVLVHVG 47 (76)
T ss_pred CCeEEEEEEEeeCCCCCCCEEEEecC
Confidence 35788899999999999999888763
No 97
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=45.35 E-value=16 Score=20.14 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=13.3
Q ss_pred CchHHHHHHHHcCC
Q 031596 1 MELESVKRYLEKGG 14 (157)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (157)
||.|++++||+...
T Consensus 1 MS~~~l~~Fl~~~~ 14 (49)
T PF07862_consen 1 MSIESLKAFLEKVK 14 (49)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999999998
No 98
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=41.24 E-value=14 Score=27.45 Aligned_cols=51 Identities=24% Similarity=0.364 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCCCCcccHHHHHHHHHHHHHHhHHhhCCCceeEEEEEEEEEeecCC
Q 031596 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAF 108 (157)
Q Consensus 53 ~~~~~~~~~~n~~g~vhGG~~~~l~D~~~~~~~~~~~~~~~~vt~~l~i~f~~p~~ 108 (157)
+-+...|...-..|+-|||.+.-+|+.+. ..+.+..+++++++++=+.|.-
T Consensus 64 llw~~~P~lvIE~Gs~~GGSal~fA~~m~-----s~Gq~~kvl~vdIdi~~~~p~a 114 (237)
T COG3510 64 LLWELQPSLVIEFGSRHGGSALFFANMMI-----SIGQPFKVLGVDIDIKPLDPAA 114 (237)
T ss_pred HHHhcCCceeEeeccccCchhhhhhHhHH-----hcCCCceEEEEecccCcCChhh
Confidence 44556677677789999999999998332 3345667889999988877753
No 99
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=40.46 E-value=92 Score=19.46 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=29.6
Q ss_pred ecC-CCCCeEEEEEEEEEecCc-----EEEEEEEEEECCCCcEEEEEEE
Q 031596 105 DAA-FGGEEIEIEAKVLRVGKA-----VAVVSVELRKKDTGKIVAQGRH 147 (157)
Q Consensus 105 ~p~-~~g~~~~~~~~v~~~g~~-----~~~~~~~v~~d~~g~~~a~a~~ 147 (157)
||+ ++|+.|.+++-+.....+ ...+.++|. |.+|+.+.+...
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~-dp~g~~v~~~~~ 55 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIK-DPSGNEVFRWSV 55 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEE-ETTSEEEEEEEE
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEE-CCCCCEEEEEEe
Confidence 444 578899999988877721 246778888 588888876655
No 100
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=39.00 E-value=80 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.0
Q ss_pred CchHHHHHHHHcCC
Q 031596 1 MELESVKRYLEKGG 14 (157)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (157)
||+|+++.|.....
T Consensus 23 ~spe~V~dfYs~~Y 36 (66)
T TIGR03738 23 MSPEQVRDFYSAQY 36 (66)
T ss_pred CCHHHHHHHHhccC
Confidence 57777777777666
No 101
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=38.99 E-value=24 Score=17.66 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=8.4
Q ss_pred CchHHHHHHHHc
Q 031596 1 MELESVKRYLEK 12 (157)
Q Consensus 1 ~~~e~~~~~l~~ 12 (157)
+|.|++++||+.
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 478899999874
No 102
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=38.52 E-value=1.2e+02 Score=20.35 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=24.4
Q ss_pred EEEEEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcE
Q 031596 97 VEINVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 97 ~~l~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~ 141 (157)
+++.++-+.| ++.+++++++....+......+....|++|.+
T Consensus 5 ~~I~v~GL~p---~~~vtl~a~~~~~~g~~w~S~A~f~Ad~~G~V 46 (126)
T PF04775_consen 5 VDIRVSGLPP---GQEVTLRARLTDDNGVQWQSYATFRADENGIV 46 (126)
T ss_dssp -EEEEES--T---T-EEEEEEEEE-TTS-EEEEEEEEE--TTS-E
T ss_pred eEEEEeCCCC---CCEEEEEEEEEeCCCCEEEEEEEEEcCCCCeE
Confidence 3455555555 67899999998776767677777776777765
No 103
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=36.48 E-value=93 Score=18.38 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=18.2
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEE
Q 031596 123 GKAVAVVSVELRKKDTGKIVAQGRH 147 (157)
Q Consensus 123 g~~~~~~~~~v~~d~~g~~~a~a~~ 147 (157)
..+...+.+.|.++.+|++.|...-
T Consensus 29 D~~~~~vtV~V~~~~~G~L~A~v~y 53 (64)
T TIGR03786 29 DTTVHTVTVTVTDDEQGKLVATVIY 53 (64)
T ss_pred cCCEEEEEEEEEECCCCcEEEEEEE
Confidence 3556678888887778999776543
No 104
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=34.35 E-value=1.5e+02 Score=19.98 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=33.8
Q ss_pred EEEEEEEEEeecCC--CCCeEEEEEEEEEe-cCcEEEEEEEEEECCC
Q 031596 95 VSVEINVSYLDAAF--GGEEIEIEAKVLRV-GKAVAVVSVELRKKDT 138 (157)
Q Consensus 95 vt~~l~i~f~~p~~--~g~~~~~~~~v~~~-g~~~~~~~~~v~~d~~ 138 (157)
..+..+++|+.|.+ .|..+.+-+++.+. ......+.+.+..+-+
T Consensus 51 ~~l~V~t~~l~~~~~~~gslyq~iGEl~~~~~~~~~~L~ARV~r~Vd 97 (118)
T PF15490_consen 51 HSLKVDTKLLEPFQARVGSLYQFIGELEHQPQDGGIVLKARVLRCVD 97 (118)
T ss_pred cEEEEEeeEccccccCCCCEEEEEEEEEEEcCCCcEEEEEEEEEecC
Confidence 55677788899887 78889999999888 6677788888864333
No 105
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=34.10 E-value=1.5e+02 Score=20.14 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.5
Q ss_pred EEEEEeecCC-CCCeEEEEEEEEEecCcEE---EEEEEEEECCCCcEEEEEEE
Q 031596 99 INVSYLDAAF-GGEEIEIEAKVLRVGKAVA---VVSVELRKKDTGKIVAQGRH 147 (157)
Q Consensus 99 l~i~f~~p~~-~g~~~~~~~~v~~~g~~~~---~~~~~v~~d~~g~~~a~a~~ 147 (157)
++-..+++.+ .++.+.+++++....+... .++.+++ |.+|+++++-..
T Consensus 55 i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~-D~~g~~l~~r~~ 106 (149)
T PF11906_consen 55 IESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLL-DAQGQPLARRVF 106 (149)
T ss_pred EeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEE-CCCCCEEEEEEE
Confidence 3335556655 3458999999987765544 5899999 799999876554
No 106
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=33.47 E-value=1.3e+02 Score=19.39 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=20.1
Q ss_pred ecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCc
Q 031596 105 DAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGK 140 (157)
Q Consensus 105 ~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~ 140 (157)
.+...|+.+++.+|+.+.-...-..-..++ |..|.
T Consensus 7 ~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~Lr-D~~g~ 41 (108)
T cd04316 7 TPELDGEEVTVAGWVHEIRDLGGIKFVILR-DREGI 41 (108)
T ss_pred chhhCCCEEEEEEEEEeeeccCCeEEEEEe-cCCee
Confidence 334468889999999754322223344455 45554
No 107
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.55 E-value=2.2e+02 Score=21.11 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=37.7
Q ss_pred EEEEEeecCCCCCeEEEEEEEEEecCcEE---EEEEEEEECCCCcEEEEEEEEEE
Q 031596 99 INVSYLDAAFGGEEIEIEAKVLRVGKAVA---VVSVELRKKDTGKIVAQGRHTKY 150 (157)
Q Consensus 99 l~i~f~~p~~~g~~~~~~~~v~~~g~~~~---~~~~~v~~d~~g~~~a~a~~~~~ 150 (157)
..+.|..+=..|+.+.+...+...+...+ .++++++ |.+|+++.+-+..++
T Consensus 100 VdV~l~~~~y~~~~L~l~~~ltnqSsqsVv~Vel~v~l~-d~~G~~L~~e~v~vW 153 (199)
T PF11355_consen 100 VDVSLGASQYEDGQLGLPFSLTNQSSQSVVLVELEVTLF-DDSGQLLKTETVKVW 153 (199)
T ss_pred eeEEEeccceeCCeEEEEEEEecCCCceEEEEEEEEEEE-cCCCCEeeEeeeehh
Confidence 45666666666778999999987776544 3666778 799999988777654
No 108
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=28.78 E-value=1.6e+02 Score=18.69 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=24.9
Q ss_pred EEEEeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCc
Q 031596 100 NVSYLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGK 140 (157)
Q Consensus 100 ~i~f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~ 140 (157)
.++|-.=-..|-...+.+++.+.|.. ..++++++|-..|+
T Consensus 64 ~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv~~~~ 103 (105)
T PF04052_consen 64 QVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDVASGK 103 (105)
T ss_dssp G--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-----
T ss_pred CcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEeccccc
Confidence 44554434457789999999988888 99999999644443
No 109
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=28.77 E-value=1.3e+02 Score=20.13 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=20.9
Q ss_pred EeecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCCcE
Q 031596 103 YLDAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 103 f~~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~ 141 (157)
-+.+...|+.+++.+|+.+.-...-.+-..+. |..|.+
T Consensus 7 ~~~~~~~g~~V~i~Gwv~~~R~~gk~~Fi~Lr-D~~g~~ 44 (135)
T cd04317 7 ELRESHVGQEVTLCGWVQRRRDHGGLIFIDLR-DRYGIV 44 (135)
T ss_pred hCChhHCCCEEEEEEeEehhcccCCEEEEEEe-cCCeeE
Confidence 33444568889999999743322113334445 455543
No 110
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=28.40 E-value=1.1e+02 Score=20.24 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=19.0
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 124 KAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 124 ~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
++.-.+.++|.+|.+|++++.++..
T Consensus 22 rSnkhiyaQvidd~~g~tlasaST~ 46 (109)
T CHL00139 22 RSNKHIYAQIIDDTNGKTLVACSTL 46 (109)
T ss_pred EeCCeEEEEEEECCCCCEEEEEecC
Confidence 3444678888877889999998864
No 111
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=28.07 E-value=58 Score=22.52 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=17.4
Q ss_pred EEEEEEEEEeecCCCCCeEEEEEEEEEecC
Q 031596 95 VSVEINVSYLDAAFGGEEIEIEAKVLRVGK 124 (157)
Q Consensus 95 vt~~l~i~f~~p~~~g~~~~~~~~v~~~g~ 124 (157)
.+++ .+---+-+..|+++++++++.|.|+
T Consensus 33 F~v~-tmPVpk~I~~GeTvEIR~~l~reG~ 61 (137)
T PF12988_consen 33 FTVE-TMPVPKKIKKGETVEIRCELKREGN 61 (137)
T ss_dssp EEEE-E----SS--TTEEEEEEEEEEESS-
T ss_pred cEEE-EeccccccCCCCEEEEEEEEecCce
Confidence 4443 3334456778999999999999884
No 112
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=27.80 E-value=1.4e+02 Score=17.67 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=25.3
Q ss_pred eEEEEEEEEEecCcEEEEEEEEEECCCCcEEEEEEEE
Q 031596 112 EIEIEAKVLRVGKAVAVVSVELRKKDTGKIVAQGRHT 148 (157)
Q Consensus 112 ~~~~~~~v~~~g~~~~~~~~~v~~d~~g~~~a~a~~~ 148 (157)
.-+.-+...-........+++|. +++|++++....+
T Consensus 29 r~Rt~S~k~~~~~~~G~WrV~V~-~~~G~~l~~~~F~ 64 (66)
T PF11141_consen 29 RWRTWSSKQNFPDQPGDWRVEVV-DEDGQVLGSLRFS 64 (66)
T ss_pred CEEEEEEeecCCCCCcCEEEEEE-cCCCCEEEEEEEE
Confidence 34444444444457778999999 6999999887765
No 113
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=27.42 E-value=1.3e+02 Score=21.16 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=25.5
Q ss_pred EEEEEEEEecCcEEEEEEEEEE--CCCCcEEEEEE
Q 031596 114 EIEAKVLRVGKAVAVVSVELRK--KDTGKIVAQGR 146 (157)
Q Consensus 114 ~~~~~v~~~g~~~~~~~~~v~~--d~~g~~~a~a~ 146 (157)
..-.++.+.||+...=++.+++ |++|+.++.|-
T Consensus 106 y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa 140 (148)
T PF08670_consen 106 YSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAA 140 (148)
T ss_pred CCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEE
Confidence 3456788899999998888886 78888776653
No 114
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=27.38 E-value=1.5e+02 Score=18.12 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=21.9
Q ss_pred ecCCCCCeEEEEEEEEEecCcEEEEEEEEEECCCC
Q 031596 105 DAAFGGEEIEIEAKVLRVGKAVAVVSVELRKKDTG 139 (157)
Q Consensus 105 ~p~~~g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g 139 (157)
-+++.|..+++.. ..++....+.+++. +.+|
T Consensus 50 ~~~~~G~tf~C~v---t~~G~~~~v~Vtvt-~~dG 80 (80)
T PF14230_consen 50 LEVEVGATFTCTV---TVDGETQTVTVTVT-DVDG 80 (80)
T ss_pred CcccCCceEEEEE---EeCCEEEEEEEEEE-CCCC
Confidence 4667787666663 37788889999998 4554
No 115
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=24.83 E-value=1.4e+02 Score=17.80 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=9.0
Q ss_pred CchHHHHHHHHcCC
Q 031596 1 MELESVKRYLEKGG 14 (157)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (157)
||.|+++.|.....
T Consensus 24 ~spe~V~~~ya~~Y 37 (65)
T PF14454_consen 24 LSPEEVRDFYAAQY 37 (65)
T ss_pred CCHHHHHHHHhhhC
Confidence 56666666666665
No 116
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=24.31 E-value=2.6e+02 Score=19.58 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=30.0
Q ss_pred ecCCCCCeEEEEEEEE--EecCcEEEEEEEEEECCCCcEEEEEEEEEEEe
Q 031596 105 DAAFGGEEIEIEAKVL--RVGKAVAVVSVELRKKDTGKIVAQGRHTKYLA 152 (157)
Q Consensus 105 ~p~~~g~~~~~~~~v~--~~g~~~~~~~~~v~~d~~g~~~a~a~~~~~i~ 152 (157)
=|+.+|+-+..+.+.+ -.-..+-.+.++++ |.+|+.+.--++.|-+.
T Consensus 97 CPVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~-d~~~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 97 CPVEPGDFLVAHSQVLPGYTPPGSYVLKMTAY-DAKGKELTCISFSFDIG 145 (153)
T ss_pred CCcCcCceeeeeeEeccCcCCCceEEEEEEee-cCCCCEEEEEEEEEEee
Confidence 3677776555555554 23355667888888 57777776666666554
No 117
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.90 E-value=2.5e+02 Score=19.30 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=29.9
Q ss_pred EEEEEEEEeecCCCCCeEEEEEEEEEecC--cEEEEEEEEE
Q 031596 96 SVEINVSYLDAAFGGEEIEIEAKVLRVGK--AVAVVSVELR 134 (157)
Q Consensus 96 t~~l~i~f~~p~~~g~~~~~~~~v~~~g~--~~~~~~~~v~ 134 (157)
...++|.|-.|+++|+.+++.-+-++--+ ....+.+.++
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 35788999999999999999997765332 4556777777
No 118
>PRK10409 hydrogenase assembly chaperone; Provisional
Probab=23.41 E-value=1.7e+02 Score=18.71 Aligned_cols=25 Identities=8% Similarity=0.303 Sum_probs=20.5
Q ss_pred eeEEEEEEEEEee------cCCCCCeEEEEE
Q 031596 93 VGVSVEINVSYLD------AAFGGEEIEIEA 117 (157)
Q Consensus 93 ~~vt~~l~i~f~~------p~~~g~~~~~~~ 117 (157)
.++....++.++. ++++||.+.+++
T Consensus 22 ~Gv~reV~l~Lv~~~~~~~~~~vGDyVLVHa 52 (90)
T PRK10409 22 CGIQRDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_pred CCeEEEEEEeeecccCCCCccCCCCEEEEec
Confidence 4588899999995 578999988876
No 119
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=23.23 E-value=1.4e+02 Score=18.55 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=3.8
Q ss_pred CCCCcEEEE
Q 031596 136 KDTGKIVAQ 144 (157)
Q Consensus 136 d~~g~~~a~ 144 (157)
|.+|+..+.
T Consensus 59 d~~G~a~~~ 67 (92)
T smart00634 59 DANGIATVT 67 (92)
T ss_pred CCCCEEEEE
Confidence 344444433
No 120
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=22.93 E-value=3e+02 Score=20.30 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCeEEEEEEEEEecCcEEEEEEEEEECCCCc
Q 031596 110 GEEIEIEAKVLRVGKAVAVVSVELRKKDTGK 140 (157)
Q Consensus 110 g~~~~~~~~v~~~g~~~~~~~~~v~~d~~g~ 140 (157)
|+.+.+..+-++.+++..-++-++| |.||.
T Consensus 100 ~~Rl~i~I~SI~~~~~IipV~L~vY-D~DG~ 129 (200)
T PF12508_consen 100 GQRLLITITSIEYGGNIIPVELSVY-DLDGQ 129 (200)
T ss_pred ccEEEEEEEEEEECCEEEEEEEEEE-CCCCC
Confidence 5688888888899999999999999 67775
No 121
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=22.08 E-value=78 Score=24.39 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=11.1
Q ss_pred CchHHHHHHHHcCC
Q 031596 1 MELESVKRYLEKGG 14 (157)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (157)
|.-+++++|++.+.
T Consensus 1 M~~~~i~~f~~ryf 14 (260)
T PF11079_consen 1 MQQQQIHQFLERYF 14 (260)
T ss_pred CCHHHHHHHHHHHH
Confidence 67788888888776
No 122
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=21.97 E-value=1.5e+02 Score=16.92 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=12.1
Q ss_pred EEEEEEEEe-cCcEEEEEEEEEECCCCcE
Q 031596 114 EIEAKVLRV-GKAVAVVSVELRKKDTGKI 141 (157)
Q Consensus 114 ~~~~~v~~~-g~~~~~~~~~v~~d~~g~~ 141 (157)
.+.+++.+. .+..-.+.+++. |..|.+
T Consensus 2 ~v~G~V~~~~~~~~~~~~~~l~-D~tg~i 29 (75)
T PF01336_consen 2 TVEGRVTSIRRSGGKIVFFTLE-DGTGSI 29 (75)
T ss_dssp EEEEEEEEEEEEETTEEEEEEE-ETTEEE
T ss_pred EEEEEEEEEEcCCCCEEEEEEE-ECCccE
Confidence 344555444 333334445555 354443
No 123
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=21.14 E-value=67 Score=18.64 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.4
Q ss_pred CchHHHHHHHHcCC
Q 031596 1 MELESVKRYLEKGG 14 (157)
Q Consensus 1 ~~~e~~~~~l~~~~ 14 (157)
|+-|+++.|+....
T Consensus 37 ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 37 MSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhc
Confidence 78899999998765
Done!