Query 031597
Match_columns 156
No_of_seqs 138 out of 183
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 02:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 100.0 1.7E-42 3.7E-47 278.3 8.5 142 7-154 10-157 (167)
2 PF14159 CAAD: CAAD domains of 99.9 1.2E-28 2.5E-33 180.3 5.6 77 78-154 2-82 (90)
3 PF01810 LysE: LysE type trans 78.8 4.1 8.9E-05 31.4 4.5 36 110-145 47-83 (191)
4 PF11364 DUF3165: Protein of u 76.4 4.5 9.7E-05 30.0 3.8 57 91-147 24-80 (81)
5 PRK09304 arginine exporter pro 73.8 4.9 0.00011 32.2 3.9 49 93-141 38-89 (207)
6 PRK10323 cysteine/O-acetylseri 72.8 5 0.00011 32.0 3.6 50 93-142 43-93 (195)
7 PRK10958 leucine export protei 69.5 6.8 0.00015 31.7 3.8 34 108-141 63-96 (212)
8 PRK10520 rhtB homoserine/homos 68.6 7.2 0.00016 30.9 3.7 37 106-142 57-93 (205)
9 PF11351 DUF3154: Protein of u 66.6 24 0.00052 26.9 6.1 24 117-142 95-118 (123)
10 PRK10229 threonine efflux syst 65.6 9.4 0.0002 30.2 3.8 34 108-141 58-91 (206)
11 TIGR00948 2a75 L-lysine export 63.5 13 0.00028 28.8 4.1 37 106-142 40-76 (177)
12 PF05251 UPF0197: Uncharacteri 61.5 3.4 7.3E-05 30.2 0.5 36 117-152 16-51 (77)
13 TIGR00949 2A76 The Resistance 60.5 13 0.00029 28.6 3.7 35 107-141 40-74 (185)
14 PF06072 Herpes_US9: Alphaherp 51.2 61 0.0013 22.8 5.4 48 67-114 5-55 (60)
15 COG4956 Integral membrane prot 50.7 55 0.0012 30.0 6.4 56 93-150 81-138 (356)
16 PF11190 DUF2976: Protein of u 49.7 43 0.00094 24.8 4.7 73 67-142 6-82 (87)
17 PF10031 DUF2273: Small integr 49.0 31 0.00068 23.0 3.6 32 81-114 1-33 (51)
18 COG1280 RhtB Putative threonin 48.0 23 0.0005 28.7 3.4 37 107-143 58-94 (208)
19 PF04418 DUF543: Domain of unk 46.6 26 0.00057 25.2 3.1 30 79-108 17-49 (75)
20 PRK07193 fliF flagellar MS-rin 43.5 34 0.00074 32.5 4.2 50 72-121 4-58 (552)
21 PF12911 OppC_N: N-terminal TM 40.3 52 0.0011 20.9 3.6 19 80-98 5-24 (56)
22 KOG4452 Predicted membrane pro 38.2 14 0.0003 27.0 0.6 31 116-146 17-48 (79)
23 PF05552 TM_helix: Conserved T 36.3 52 0.0011 21.3 3.1 37 79-115 3-40 (53)
24 PF10958 DUF2759: Protein of u 35.8 50 0.0011 22.6 3.0 42 100-141 3-44 (52)
25 TIGR03745 conj_TIGR03745 integ 33.4 1.1E+02 0.0025 23.5 4.9 48 67-117 22-69 (104)
26 PF07787 DUF1625: Protein of u 31.8 92 0.002 25.9 4.6 53 70-123 165-218 (248)
27 COG4280 Predicted membrane pro 31.2 70 0.0015 27.8 3.8 54 88-143 32-85 (236)
28 PF10192 GpcrRhopsn4: Rhodopsi 30.4 51 0.0011 27.5 2.8 50 88-137 171-222 (257)
29 PF08606 Prp19: Prp19/Pso4-lik 30.1 52 0.0011 23.7 2.4 18 70-87 3-20 (70)
30 TIGR00766 ribonuclease, putati 28.9 1.2E+02 0.0026 25.0 4.8 43 74-117 64-110 (263)
31 PRK06012 flhA flagellar biosyn 27.1 1.1E+02 0.0024 30.2 4.8 68 55-140 263-330 (697)
32 PLN00204 CP12 gene family prot 27.0 84 0.0018 25.0 3.4 54 1-64 1-54 (126)
33 PRK06007 fliF flagellar MS-rin 26.2 94 0.002 29.3 4.1 21 72-92 4-24 (542)
34 PF06522 B12D: NADH-ubiquinone 25.6 27 0.00059 24.4 0.4 19 127-145 15-33 (73)
35 KOG2927 Membrane component of 24.7 52 0.0011 30.4 2.0 42 97-138 224-277 (372)
36 PF11833 DUF3353: Protein of u 23.7 1.3E+02 0.0028 24.8 4.1 60 74-139 76-135 (194)
37 PF11833 DUF3353: Protein of u 23.2 1.7E+02 0.0037 24.1 4.7 32 90-121 139-170 (194)
38 PF14242 DUF4342: Domain of un 22.5 2.5E+02 0.0053 20.4 4.9 22 66-87 8-29 (84)
39 PF13779 DUF4175: Domain of un 22.0 1.6E+02 0.0034 29.6 4.9 56 97-153 9-68 (820)
40 TIGR02240 PHA_depoly_arom poly 21.9 1.2E+02 0.0027 24.1 3.5 82 28-109 26-111 (276)
41 PF04612 T2SM: Type II secreti 21.1 32 0.00069 26.0 0.0 12 78-89 2-13 (160)
42 PF03904 DUF334: Domain of unk 21.0 1.7E+02 0.0037 25.4 4.4 43 72-114 128-170 (230)
43 COG3821 Predicted membrane pro 20.7 41 0.00089 29.1 0.6 26 127-152 186-227 (234)
44 PF10864 DUF2663: Protein of u 20.5 2.3E+02 0.005 22.5 4.7 16 81-96 10-25 (130)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=100.00 E-value=1.7e-42 Score=278.27 Aligned_cols=142 Identities=30% Similarity=0.623 Sum_probs=119.2
Q ss_pred hhhhCCCCcccccccccccccccccCCCCCC----CCCCCCCccccccccCccceeeeecccC--CCCCccchhHHHHHH
Q 031597 7 AAVLTPRVPSTTTVKVKSSHCFALPCLPPRS----STPPFSSSIKQVSESRRFPLLQVRASSS--EETSTVDADELFSDL 80 (156)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~lp~lp~R~----~~~~~~~~~~~~~~s~~~~~l~vrass~--~esss~~~~Ei~~~l 80 (156)
..+....-|.... +++++|+.+|.|||.+ .++++++.||++..++.+++ |+++ ++.++.+.+|+++++
T Consensus 10 ~~~~~~~~~~~~~--a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~----a~ge~s~~~~~~~~~ei~k~~ 83 (167)
T PLN02777 10 STLIDSKAPRSSA--AASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTM----ATGEAPAEVETTELPEIVKTV 83 (167)
T ss_pred cccccCCCCCcCc--ccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHH----hccCCCcccccccHHHHHHHH
Confidence 3344444444332 3469999999999755 36788999999998886554 4442 333455778999999
Q ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccchhhHhhhhhcc
Q 031597 81 KEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSHA 154 (156)
Q Consensus 81 ~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~~~~~ 154 (156)
||+||++|||++++++++++||++|++.+||+|||+|||+|++||||||||++||+||||+|++|||||++++.
T Consensus 84 ~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~ 157 (167)
T PLN02777 84 QEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIK 157 (167)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=99.95 E-value=1.2e-28 Score=180.28 Aligned_cols=77 Identities=49% Similarity=0.855 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccchhhHHHH----HHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccchhhHhhhhhc
Q 031597 78 SDLKEKWDAVENKSTVLLYG----GGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSSH 153 (156)
Q Consensus 78 ~~l~e~Wd~~e~k~~vl~~g----~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~~~~ 153 (156)
++++++|++.++++....++ +++++++|++.++++|||+||++|++|||||+||++||+||||++++|||||.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i 81 (90)
T PF14159_consen 2 SKLPEYWGEFFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI 81 (90)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence 45666666666666544444 55699999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 031597 154 A 154 (156)
Q Consensus 154 ~ 154 (156)
.
T Consensus 82 ~ 82 (90)
T PF14159_consen 82 Q 82 (90)
T ss_pred H
Confidence 4
No 3
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=78.80 E-value=4.1 Score=31.43 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=29.5
Q ss_pred HHHHh-hccCChhhHHHHHhhhheehhhhhhhccchh
Q 031597 110 IVGAI-NSVPLLPKLLELIGLGYTGWFVYRYLLFKVR 145 (156)
Q Consensus 110 vl~AI-d~iPLlp~llELVGlgyt~WF~yRyLl~~~~ 145 (156)
-++++ +..|.+-..++++|..|..|+.|+.+..+.+
T Consensus 47 g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 47 GLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34444 6699999999999999999999998875443
No 4
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=76.38 E-value=4.5 Score=29.96 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccchhhH
Q 031597 91 STVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLR 147 (156)
Q Consensus 91 ~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~ 147 (156)
.++=.++..+++++-+..++++.+.-.-+-|.+|--+|+...++|.+|.+.+=++|+
T Consensus 24 ~Tln~i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~Mi~l~y~alrDi~~l~~k~ 80 (81)
T PF11364_consen 24 GTLNMIGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAMIVLGYFALRDISKLSTKK 80 (81)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 344455667778888888999999999999999999999999999999998777665
No 5
>PRK09304 arginine exporter protein; Provisional
Probab=73.80 E-value=4.9 Score=32.19 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHhhccCChhhHHHHHhhhheehhhhhhhc
Q 031597 93 VLLYGGGAIVAVWLS---STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (156)
Q Consensus 93 vl~~g~gaival~v~---~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl 141 (156)
..+.|...-..+|+. .++-.-++..|.+=.++.++|..|..|..|+-+-
T Consensus 38 ~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 38 MIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444433 3333447899999999999999999999998664
No 6
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=72.75 E-value=5 Score=31.96 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHhhccCChhhHHHHHhhhheehhhhhhhcc
Q 031597 93 VLLYGGGAIVAVWLSSTIV-GAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 93 vl~~g~gaival~v~~~vl-~AId~iPLlp~llELVGlgyt~WF~yRyLl~ 142 (156)
++|...|-++...+..+.+ .-++..|.+=..+.++|..|..|..||-+-.
T Consensus 43 ~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 43 LAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445444444444444 3466889999999999999999999997753
No 7
>PRK10958 leucine export protein LeuE; Provisional
Probab=69.55 E-value=6.8 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=28.4
Q ss_pred HHHHHHhhccCChhhHHHHHhhhheehhhhhhhc
Q 031597 108 STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (156)
Q Consensus 108 ~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl 141 (156)
.++-.-++..|.+-..++++|.+|..|+.||-+-
T Consensus 63 ~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~ 96 (212)
T PRK10958 63 AGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLR 96 (212)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566788999999999999999999998663
No 8
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=68.58 E-value=7.2 Score=30.91 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhcc
Q 031597 106 LSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 106 v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~ 142 (156)
...++-.-++..|.+=.+++++|..|..|+.+|-+..
T Consensus 57 ~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 57 VGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455556678899999999999999999999997754
No 9
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=66.57 E-value=24 Score=26.95 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=20.0
Q ss_pred cCChhhHHHHHhhhheehhhhhhhcc
Q 031597 117 VPLLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 117 iPLlp~llELVGlgyt~WF~yRyLl~ 142 (156)
|| ..+..|.|+|++++|+.|..-|
T Consensus 95 vp--e~lw~Llg~~vlgy~~~Rs~eK 118 (123)
T PF11351_consen 95 VP--EPLWWLLGAGVLGYFGARSQEK 118 (123)
T ss_pred CC--HHHHHHHHHHHhhhHHHhhHHH
Confidence 55 5788999999999999996543
No 10
>PRK10229 threonine efflux system; Provisional
Probab=65.59 E-value=9.4 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=29.0
Q ss_pred HHHHHHhhccCChhhHHHHHhhhheehhhhhhhc
Q 031597 108 STIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (156)
Q Consensus 108 ~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl 141 (156)
.++-.-+...|.+-.++.++|..|..|+.|+-+-
T Consensus 58 ~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 58 LGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566888999999999999999999998775
No 11
>TIGR00948 2a75 L-lysine exporter.
Probab=63.52 E-value=13 Score=28.79 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhcc
Q 031597 106 LSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 106 v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~ 142 (156)
...++-.-++..|.+=..+.++|-.|..|..||-+..
T Consensus 40 ~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 40 GVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445667899999999999999999999987754
No 12
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=61.47 E-value=3.4 Score=30.19 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=27.3
Q ss_pred cCChhhHHHHHhhhheehhhhhhhccchhhHhhhhh
Q 031597 117 VPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCKSS 152 (156)
Q Consensus 117 iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~~~ 152 (156)
.|.+.-+|=.+|+.+++||........+.++.+.++
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kE 51 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKE 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Confidence 466777888899999999998888866555555444
No 13
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=60.52 E-value=13 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCChhhHHHHHhhhheehhhhhhhc
Q 031597 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (156)
Q Consensus 107 ~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl 141 (156)
..++-.-++..|.+-..+.++|-.|..|+.||-+.
T Consensus 40 ~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 40 LLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667789999999999999999999998664
No 14
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=51.18 E-value=61 Score=22.82 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=27.8
Q ss_pred CCCccchhHHHHHHHHHHHhccc--chhh-HHHHHHHHHHHHHHHHHHHHh
Q 031597 67 ETSTVDADELFSDLKEKWDAVEN--KSTV-LLYGGGAIVAVWLSSTIVGAI 114 (156)
Q Consensus 67 esss~~~~Ei~~~l~e~Wd~~e~--k~~v-l~~g~gaival~v~~~vl~AI 114 (156)
||+..+++|++..+..+=..... +... ...++++++++-++++.++++
T Consensus 5 ESDnETA~~FL~RvGr~q~~~r~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 5 ESDNETATEFLRRVGRQQHASRRRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred ccccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556789999988554323322 2223 223344455666778877776
No 15
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=50.65 E-value=55 Score=30.01 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh--hccCChhhHHHHHhhhheehhhhhhhccchhhHhhh
Q 031597 93 VLLYGGGAIVAVWLSSTIVGAI--NSVPLLPKLLELIGLGYTGWFVYRYLLFKVRLRDCK 150 (156)
Q Consensus 93 vl~~g~gaival~v~~~vl~AI--d~iPLlp~llELVGlgyt~WF~yRyLl~~~~R~eL~ 150 (156)
++.-.+|.++++.++.-+...+ -.+|++..++-.++-...++|.+++-.++ |+|+.
T Consensus 81 ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~--~de~~ 138 (356)
T COG4956 81 ILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKK--RDEFL 138 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhh--hHHHH
Confidence 4444467777776666555533 35788999999999999999999876653 44543
No 16
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=49.68 E-value=43 Score=24.79 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=49.1
Q ss_pred CCCccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccC----ChhhHHHHHhhhheehhhhhhhcc
Q 031597 67 ETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVP----LLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 67 esss~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iP----Llp~llELVGlgyt~WF~yRyLl~ 142 (156)
+.++.+.+++++.+|..-. |-..++++.++++..+++..+.+++-|++- =-.++-..+.+|...-++.=||+.
T Consensus 6 ~Ps~g~~~~~~~~i~~y~~---d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl~ 82 (87)
T PF11190_consen 6 PPSSGGGGGIMETIKGYAK---DGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLLT 82 (87)
T ss_pred CCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444466778888877664 466778888899999999999999888763 344455555555555444444443
No 17
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.05 E-value=31 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHhcccchhhHHHHHHHHHHH-HHHHHHHHHh
Q 031597 81 KEKWDAVENKSTVLLYGGGAIVAV-WLSSTIVGAI 114 (156)
Q Consensus 81 ~e~Wd~~e~k~~vl~~g~gaival-~v~~~vl~AI 114 (156)
+|.|++ ++..+++..+|.++++ ++..+...++
T Consensus 1 ~e~~~~--~~~~iiG~~~G~ila~l~l~~GF~~tl 33 (51)
T PF10031_consen 1 MEFWKN--HRGKIIGGLIGLILALLILTFGFWKTL 33 (51)
T ss_pred ChHHHH--CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467775 6667777777777776 5666666655
No 18
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=48.02 E-value=23 Score=28.69 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=30.8
Q ss_pred HHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccc
Q 031597 107 SSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFK 143 (156)
Q Consensus 107 ~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~ 143 (156)
..++-.-+..-|.+-.++.++|-.|..|..|+-+..+
T Consensus 58 ~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 58 ALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444466888999999999999999999999977744
No 19
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=46.61 E-value=26 Score=25.16 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred HHHHHHHhc-cc--chhhHHHHHHHHHHHHHHH
Q 031597 79 DLKEKWDAV-EN--KSTVLLYGGGAIVAVWLSS 108 (156)
Q Consensus 79 ~l~e~Wd~~-e~--k~~vl~~g~gaival~v~~ 108 (156)
.+.+|||.- +| +.+.+|.++|++..+++.-
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~fr 49 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFR 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHc
Confidence 789999976 44 4456667777777776653
No 20
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=43.55 E-value=34 Score=32.51 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHhcc----cchhhHHHHHHHHHHHHHHHHHH-HHhhccCChh
Q 031597 72 DADELFSDLKEKWDAVE----NKSTVLLYGGGAIVAVWLSSTIV-GAINSVPLLP 121 (156)
Q Consensus 72 ~~~Ei~~~l~e~Wd~~e----~k~~vl~~g~gaival~v~~~vl-~AId~iPLlp 121 (156)
...+++++++++|.+.. .|..+++.++++++++.+...+. ..=+-.||+.
T Consensus 4 ~~~~~~~~l~~~w~~l~~l~~~r~~~l~~~~~~~va~~~~~~~~~~~p~Y~~Lys 58 (552)
T PRK07193 4 LMNDMLDKLKQKWSPFQLLRGNRKLILLALLALLVAAAIVLSLWRSSQGYRPLYG 58 (552)
T ss_pred hHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCeeeccc
Confidence 34678999999999884 23333333344444433332222 3334455544
No 21
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=40.29 E-value=52 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=11.5
Q ss_pred HHHHHHhc-ccchhhHHHHH
Q 031597 80 LKEKWDAV-ENKSTVLLYGG 98 (156)
Q Consensus 80 l~e~Wd~~-e~k~~vl~~g~ 98 (156)
.++.|.+. .||.+++|.++
T Consensus 5 ~~~~~~~f~~nk~a~~gl~i 24 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLII 24 (56)
T ss_pred HHHHHHHHHhCchHHHHHHH
Confidence 45666665 56766666543
No 22
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=38.23 E-value=14 Score=27.03 Aligned_cols=31 Identities=32% Similarity=0.437 Sum_probs=23.2
Q ss_pred ccCChhhHHHHHhhhheehhhhhhhc-cchhh
Q 031597 116 SVPLLPKLLELIGLGYTGWFVYRYLL-FKVRL 146 (156)
Q Consensus 116 ~iPLlp~llELVGlgyt~WF~yRyLl-~~~~R 146 (156)
..|.+..+|--||+.++.||..--.. .|.+|
T Consensus 17 vfPhLttvLl~iG~fftAwFf~~~VtStKy~r 48 (79)
T KOG4452|consen 17 VFPHLTTVLLGIGLFFTAWFFMIQVTSTKYNR 48 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHheeEecchhhH
Confidence 36888889999999999998754433 45555
No 23
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=36.32 E-value=52 Score=21.26 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=16.4
Q ss_pred HHHHHHHhc-ccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 031597 79 DLKEKWDAV-ENKSTVLLYGGGAIVAVWLSSTIVGAIN 115 (156)
Q Consensus 79 ~l~e~Wd~~-e~k~~vl~~g~gaival~v~~~vl~AId 115 (156)
.+++.|+++ +.-+.+++-++-.+++.|+...+-+.++
T Consensus 3 ~~~~~~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~ 40 (53)
T PF05552_consen 3 PLSGMLDQIIAYLPNIVGAILILIVGWWVAKFVRKLVR 40 (53)
T ss_dssp ----------GGHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556655 3444566666666666666666555543
No 24
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=35.76 E-value=50 Score=22.63 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhc
Q 031597 100 AIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLL 141 (156)
Q Consensus 100 aival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl 141 (156)
++|++-..-+++.++.+=-+++-+|-++-+..-|||...-++
T Consensus 3 ~Lvtlla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii 44 (52)
T PF10958_consen 3 GLVTLLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTII 44 (52)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888899999999999999999876554
No 25
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=33.42 E-value=1.1e+02 Score=23.52 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=36.3
Q ss_pred CCCccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 031597 67 ETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSV 117 (156)
Q Consensus 67 esss~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~i 117 (156)
..|+-+...+++.+|+.-. |-..++++.++++..+++..+.+.+-+.+
T Consensus 22 ~PS~G~g~g~~~tik~Y~~---dg~~llgL~i~a~aFi~Va~~a~~ty~Ei 69 (104)
T TIGR03745 22 APSRGGGSGIMQTIKNYGY---DGGILLGLLIAAIAFIGVAYHALGTYHEI 69 (104)
T ss_pred CCCCCCCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455569999998875 56778888889999999888888877765
No 26
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=31.78 E-value=92 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=27.5
Q ss_pred ccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH-hhccCChhhH
Q 031597 70 TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGA-INSVPLLPKL 123 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~A-Id~iPLlp~l 123 (156)
..+.+|++++-++.=...-....++|+ +...+++.++...+.. +|-+|++..+
T Consensus 165 ~~s~~e~f~~~~~~n~~~tW~lR~~G~-llmf~G~~~~~~~l~~l~~~~P~lg~l 218 (248)
T PF07787_consen 165 KVSAEEMFAKEHSANNTLTWILRFIGW-LLMFIGFFLLFSPLYTLVDWIPLLGNL 218 (248)
T ss_pred CcCHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhceeech
Confidence 346778887654321100011222222 3444556666666665 4889988763
No 27
>COG4280 Predicted membrane protein [Function unknown]
Probab=31.20 E-value=70 Score=27.81 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=38.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhhhccc
Q 031597 88 ENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRYLLFK 143 (156)
Q Consensus 88 e~k~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRyLl~~ 143 (156)
.++.++.+-+.|..+.+.+...+-.-+--+|+= .+|+|-=+-..||.||++-++
T Consensus 32 ~wr~al~ga~lglalvl~l~lvlGk~L~lvPln--~lqiv~gvLLllFG~rw~Rsa 85 (236)
T COG4280 32 KWRLALIGAVLGLALVLILTLVLGKLLYLVPLN--YLQIVSGVLLLLFGYRWIRSA 85 (236)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHccceeeeech--HHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777766666666677777873 466666667789999987544
No 28
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=30.39 E-value=51 Score=27.45 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=40.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHh--hccCChhhHHHHHhhhheehhhh
Q 031597 88 ENKSTVLLYGGGAIVAVWLSSTIVGAI--NSVPLLPKLLELIGLGYTGWFVY 137 (156)
Q Consensus 88 e~k~~vl~~g~gaival~v~~~vl~AI--d~iPLlp~llELVGlgyt~WF~y 137 (156)
|..++.+.+++=.++++|...+...++ .+=|.--.++-.-|++++.||.+
T Consensus 171 ~s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~~~~~lWFl~ 222 (257)
T PF10192_consen 171 DSWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFGIIFSLWFLS 222 (257)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566677888888888888 88899999999999999999985
No 29
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=30.09 E-value=52 Score=23.72 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=15.5
Q ss_pred ccchhHHHHHHHHHHHhc
Q 031597 70 TVDADELFSDLKEKWDAV 87 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~ 87 (156)
..+.+.+++.+|+.||.+
T Consensus 3 ~~SIP~lL~~lQnEWDa~ 20 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDAL 20 (70)
T ss_pred cCcHHHHHHHHHHHHHHH
Confidence 456789999999999987
No 30
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=28.90 E-value=1.2e+02 Score=24.97 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH----HHHHHHHhhcc
Q 031597 74 DELFSDLKEKWDAVENKSTVLLYGGGAIVAVWL----SSTIVGAINSV 117 (156)
Q Consensus 74 ~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v----~~~vl~AId~i 117 (156)
+|+.+.+++..++.-++...+ .++|.++++|. ..++-.++|++
T Consensus 64 ~~~~~~v~~~l~~~~~~~~~l-~~ig~~~ll~tas~~~~~l~~aln~i 110 (263)
T TIGR00766 64 PALAQTLKNTMNTAVDARTTV-GLIGLATALYSGLNWMGNLREAISDV 110 (263)
T ss_pred HHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555553332222 33566777774 44445555654
No 31
>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated
Probab=27.12 E-value=1.1e+02 Score=30.15 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=40.4
Q ss_pred cceeeeecccCCCCCccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheeh
Q 031597 55 FPLLQVRASSSEETSTVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGW 134 (156)
Q Consensus 55 ~~~l~vrass~~esss~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~W 134 (156)
...+.+|+++ ++ +=..|+.+++-.. + ..+.+. |++ ..+++-|-.+|.+|=++=-+++++.+|
T Consensus 263 agiiVTR~~~-~~---~lg~~i~~Ql~~~------p-~~l~~~-a~~------l~~~~liPG~P~~~fl~la~~~~~~~~ 324 (697)
T PRK06012 263 AGIIVTRVSS-DG---DVGEQIVGQLFAN------P-KALYIA-AGV------LFLLGLVPGMPHLPFLLLAGLLGFLAY 324 (697)
T ss_pred HheEEEecCC-cc---cHHHHHHHHHHcC------C-hHHHHH-HHH------HHHHhhcCCChHHHHHHHHHHHHHHHH
Confidence 3467778766 33 3455677666422 2 222221 222 234556777788887777777889999
Q ss_pred hhhhhh
Q 031597 135 FVYRYL 140 (156)
Q Consensus 135 F~yRyL 140 (156)
+.+|.-
T Consensus 325 ~~~~~~ 330 (697)
T PRK06012 325 RLRKRE 330 (697)
T ss_pred HHHhhh
Confidence 987753
No 32
>PLN00204 CP12 gene family protein; Provisional
Probab=27.02 E-value=84 Score=25.03 Aligned_cols=54 Identities=28% Similarity=0.191 Sum_probs=27.0
Q ss_pred CchhhhhhhhCCCCcccccccccccccccccCCCCCCCCCCCCCccccccccCccceeeeeccc
Q 031597 1 MAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLPPRSSTPPFSSSIKQVSESRRFPLLQVRASS 64 (156)
Q Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~lp~R~~~~~~~~~~~~~~~s~~~~~l~vrass 64 (156)
||+.+...+..||+-..+.. .++..-+ -+...+|+.. .+.++.++.+-.|||++
T Consensus 1 mat~~~~~~~~~r~~~~~~~----~~~~~~~---~~l~~~~~~~---~~~~~~~~~~~~v~a~~ 54 (126)
T PLN00204 1 MATIAGLNLSTPRVLARATD----RPKAQGP---VKLNNPWKRG---SRLGSGRMQVRPVRAAP 54 (126)
T ss_pred CcceecccccCchhhcccCC----Cccccce---eeccCccccc---ccccCCceEEEeeecCC
Confidence 66666555557787766543 1222111 1223455421 11224566666778866
No 33
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=26.22 E-value=94 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=15.9
Q ss_pred chhHHHHHHHHHHHhcccchh
Q 031597 72 DADELFSDLKEKWDAVENKST 92 (156)
Q Consensus 72 ~~~Ei~~~l~e~Wd~~e~k~~ 92 (156)
...++++++++.|.++..+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~~qk 24 (542)
T PRK06007 4 KLKELMEKLKEFLQKLSKKRK 24 (542)
T ss_pred hHHHHHHHHHHHHHhcChhhH
Confidence 346789999999998865444
No 34
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=25.57 E-value=27 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=13.4
Q ss_pred Hhhhheehhhhhhhccchh
Q 031597 127 IGLGYTGWFVYRYLLFKVR 145 (156)
Q Consensus 127 VGlgyt~WF~yRyLl~~~~ 145 (156)
+|++..+++.+|+|+..++
T Consensus 15 ~a~~~a~~~~~r~l~~~Pd 33 (73)
T PF06522_consen 15 VAVGGATFYLYRLLLTNPD 33 (73)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 3455667999999976543
No 35
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=52 Score=30.37 Aligned_cols=42 Identities=31% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHh------------hccCChhhHHHHHhhhheehhhhh
Q 031597 97 GGGAIVAVWLSSTIVGAI------------NSVPLLPKLLELIGLGYTGWFVYR 138 (156)
Q Consensus 97 g~gaival~v~~~vl~AI------------d~iPLlp~llELVGlgyt~WF~yR 138 (156)
|+|++++..+..+++..| -.+=++|-|+|=||+.=+-|=.|-
T Consensus 224 g~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~PLy~ 277 (372)
T KOG2927|consen 224 GAGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFKPLYE 277 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhccccc
Confidence 445555555555555544 345578888888888766644443
No 36
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.72 E-value=1.3e+02 Score=24.83 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHhhhheehhhhhh
Q 031597 74 DELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPLLPKLLELIGLGYTGWFVYRY 139 (156)
Q Consensus 74 ~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iPLlp~llELVGlgyt~WF~yRy 139 (156)
...++++...+|..+..-...-.++.+++++|.+.. . -+=.|.+.=-+|++.++||.+|.
T Consensus 76 p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~---~---~~~~~~l~Lal~~~~~iyfl~~K 135 (194)
T PF11833_consen 76 PPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLF---P---AASGPGLQLALGLGACIYFLNRK 135 (194)
T ss_pred chHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHH---c---CCCCcchHHHHHHHHHHHHHHHh
Confidence 334444444477665554444444545666665443 1 23334455568999999999986
No 37
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.24 E-value=1.7e+02 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 031597 90 KSTVLLYGGGAIVAVWLSSTIVGAINSVPLLP 121 (156)
Q Consensus 90 k~~vl~~g~gaival~v~~~vl~AId~iPLlp 121 (156)
...-+++++++++.-|+.++++...-..+.+|
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p 170 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLPVDIVP 170 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 34477888888888899888888766555544
No 38
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=22.53 E-value=2.5e+02 Score=20.44 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCCCccchhHHHHHHHHHHHhc
Q 031597 66 EETSTVDADELFSDLKEKWDAV 87 (156)
Q Consensus 66 ~esss~~~~Ei~~~l~e~Wd~~ 87 (156)
.|.-..+.+|+++++|+.|.+-
T Consensus 8 ~e~~~~~g~~~~~~iK~li~kG 29 (84)
T PF14242_consen 8 TEEFQVKGEELVDKIKELIKKG 29 (84)
T ss_pred cceeeecHHHHHHHHHHHHHhc
Confidence 4455667899999999999875
No 39
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.99 E-value=1.6e+02 Score=29.63 Aligned_cols=56 Identities=9% Similarity=-0.111 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhhHH----HHHhhhheehhhhhhhccchhhHhhhhhc
Q 031597 97 GGGAIVAVWLSSTIVGAINSVPLLPKLL----ELIGLGYTGWFVYRYLLFKVRLRDCKSSH 153 (156)
Q Consensus 97 g~gaival~v~~~vl~AId~iPLlp~ll----ELVGlgyt~WF~yRyLl~~~~R~eL~~~~ 153 (156)
-+..|+++.+...+++.-+.+|...-.. =++|++++.|+..|.+ +.++|.|....|
T Consensus 9 p~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrf-r~Pt~~ea~~RL 68 (820)
T PF13779_consen 9 PLLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRF-RWPTRAEALRRL 68 (820)
T ss_pred HHHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHH
Confidence 3566777777788888888887744333 3455566666666664 778998877654
No 40
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=21.90 E-value=1.2e+02 Score=24.08 Aligned_cols=82 Identities=9% Similarity=0.000 Sum_probs=48.5
Q ss_pred ccccCCCCCCCCCCC-CCccccccccCccceeeeecccCC--CCCccchhHHHHHHHHHHHhcc-cchhhHHHHHHHHHH
Q 031597 28 FALPCLPPRSSTPPF-SSSIKQVSESRRFPLLQVRASSSE--ETSTVDADELFSDLKEKWDAVE-NKSTVLLYGGGAIVA 103 (156)
Q Consensus 28 ~~lp~lp~R~~~~~~-~~~~~~~~~s~~~~~l~vrass~~--esss~~~~Ei~~~l~e~Wd~~e-~k~~vl~~g~gaiva 103 (156)
..+.++|+-..+... ..-+..+....++..+-.+.-+.. +....+.+++.+++.+..+..+ ++..++|...|+.++
T Consensus 26 ~plvllHG~~~~~~~w~~~~~~L~~~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va 105 (276)
T TIGR02240 26 TPLLIFNGIGANLELVFPFIEALDPDLEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALA 105 (276)
T ss_pred CcEEEEeCCCcchHHHHHHHHHhccCceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHH
Confidence 356777774322211 111223334445555555553321 1223457788999999999886 567788888999999
Q ss_pred HHHHHH
Q 031597 104 VWLSST 109 (156)
Q Consensus 104 l~v~~~ 109 (156)
+.+..-
T Consensus 106 ~~~a~~ 111 (276)
T TIGR02240 106 QQFAHD 111 (276)
T ss_pred HHHHHH
Confidence 886644
No 41
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=21.08 E-value=32 Score=25.99 Aligned_cols=12 Identities=25% Similarity=0.662 Sum_probs=0.0
Q ss_pred HHHHHHHHhccc
Q 031597 78 SDLKEKWDAVEN 89 (156)
Q Consensus 78 ~~l~e~Wd~~e~ 89 (156)
+.++++|+....
T Consensus 2 ~~l~~~w~~ls~ 13 (160)
T PF04612_consen 2 QQLKQWWQSLSP 13 (160)
T ss_dssp ------------
T ss_pred hHHHHHHHhCCH
Confidence 578999998843
No 42
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.99 E-value=1.7e+02 Score=25.40 Aligned_cols=43 Identities=16% Similarity=0.382 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHh
Q 031597 72 DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSSTIVGAI 114 (156)
Q Consensus 72 ~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~vl~AI 114 (156)
+.....+++++.=|+++.....+..|+++++++.++.+++-++
T Consensus 128 e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 128 ENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVMTI 170 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444666677777777778888888888888888777777654
No 43
>COG3821 Predicted membrane protein [Function unknown]
Probab=20.69 E-value=41 Score=29.13 Aligned_cols=26 Identities=31% Similarity=0.733 Sum_probs=18.5
Q ss_pred Hhhhheehhhhhh----------------hccchhhHhhhhh
Q 031597 127 IGLGYTGWFVYRY----------------LLFKVRLRDCKSS 152 (156)
Q Consensus 127 VGlgyt~WF~yRy----------------Ll~~~~R~eL~~~ 152 (156)
.+|||.+||+--| =.|++.|+.+.++
T Consensus 186 fsig~lgWfi~p~vFm~~T~~vilvL~rRqf~S~ar~al~eq 227 (234)
T COG3821 186 FSIGYLGWFISPYVFMLSTLGVILVLLRRQFFSEARRALIEQ 227 (234)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999997544 4467777777664
No 44
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=20.51 E-value=2.3e+02 Score=22.52 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=11.1
Q ss_pred HHHHHhcccchhhHHH
Q 031597 81 KEKWDAVENKSTVLLY 96 (156)
Q Consensus 81 ~e~Wd~~e~k~~vl~~ 96 (156)
|++||+.+.+-....+
T Consensus 10 K~K~e~l~k~~~~~~~ 25 (130)
T PF10864_consen 10 KEKWERLKKQHLFWQW 25 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999876543333
Done!