Query 031597
Match_columns 156
No_of_seqs 138 out of 183
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kyh_A KVAP, voltage-gated pot 27.4 1E+02 0.0036 22.7 5.1 66 83-150 14-83 (147)
2 3r0v_A Alpha/beta hydrolase fo 27.2 59 0.002 22.8 3.5 40 70-109 68-107 (262)
3 3qmv_A Thioesterase, REDJ; alp 26.2 88 0.003 22.9 4.4 49 67-115 94-144 (280)
4 2xpp_A IWS1, ECU08_0440; trans 24.3 2E+02 0.0067 21.8 6.2 70 72-141 36-118 (145)
5 3bdv_A Uncharacterized protein 23.7 51 0.0017 22.8 2.6 39 70-108 55-93 (191)
6 1mj5_A 1,3,4,6-tetrachloro-1,4 23.6 87 0.003 22.5 3.9 47 71-117 80-128 (302)
7 1ors_C Potassium channel; volt 22.8 1.3E+02 0.0045 21.3 4.7 48 95-142 9-57 (132)
8 2k1k_A Ephrin type-A receptor 21.6 97 0.0033 18.6 3.2 15 93-107 13-27 (38)
9 3hss_A Putative bromoperoxidas 19.9 85 0.0029 22.5 3.2 40 70-109 90-130 (293)
10 3g9x_A Haloalkane dehalogenase 19.7 1.2E+02 0.004 21.6 3.8 41 70-110 78-119 (299)
No 1
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=27.44 E-value=1e+02 Score=22.73 Aligned_cols=66 Identities=12% Similarity=-0.076 Sum_probs=40.2
Q ss_pred HHHhcccchhhHHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHHhhhheehhhhhhhc---cchhhHhhh
Q 031597 83 KWDAVENKSTVLLYGGGAIVAVWLSSTIVGAINSVPL-LPKLLELIGLGYTGWFVYRYLL---FKVRLRDCK 150 (156)
Q Consensus 83 ~Wd~~e~k~~vl~~g~gaival~v~~~vl~AId~iPL-lp~llELVGlgyt~WF~yRyLl---~~~~R~eL~ 150 (156)
-|+-+|+|. .-+...+++.+.+...++++...++- ....++.+-....+||+.-|++ .+++|.+.+
T Consensus 14 ~~~~~e~~~--f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~ 83 (147)
T 2kyh_A 14 IGDVMEHPL--VELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYV 83 (147)
T ss_dssp HHHHHTCHH--HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCch--HHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 366677764 23333344444555666666665542 3457888888888888887766 355555544
No 2
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Probab=27.17 E-value=59 Score=22.81 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred ccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Q 031597 70 TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSST 109 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~~ 109 (156)
..+.++..+++.+..+..+++..++|.-.|+.+++.+..-
T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~~~l~G~S~Gg~ia~~~a~~ 107 (262)
T 3r0v_A 68 PYAVEREIEDLAAIIDAAGGAAFVFGMSSGAGLSLLAAAS 107 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCEEEEEETHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHHHHh
Confidence 4567888999998888888777788888999998876543
No 3
>3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A*
Probab=26.22 E-value=88 Score=22.93 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=36.6
Q ss_pred CCCccchhHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 031597 67 ETSTVDADELFSDLKEKWDAV--ENKSTVLLYGGGAIVAVWLSSTIVGAIN 115 (156)
Q Consensus 67 esss~~~~Ei~~~l~e~Wd~~--e~k~~vl~~g~gaival~v~~~vl~AId 115 (156)
+....+..+..+++.+..+.. .++..++|.-.|+.+++.+..-.-+-+.
T Consensus 94 ~~~~~~~~~~a~~~~~~l~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~~~ 144 (280)
T 3qmv_A 94 ERPYDTMEPLAEAVADALEEHRLTHDYALFGHSMGALLAYEVACVLRRRGA 144 (280)
T ss_dssp SCCCCSHHHHHHHHHHHHHHTTCSSSEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHHcCC
Confidence 334456788899998888887 4466788888999999988776554444
No 4
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=24.31 E-value=2e+02 Score=21.78 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHHHhcccchhhHHHHHHHHHHHH-------------HHHHHHHHhhccCChhhHHHHHhhhheehhhhh
Q 031597 72 DADELFSDLKEKWDAVENKSTVLLYGGGAIVAVW-------------LSSTIVGAINSVPLLPKLLELIGLGYTGWFVYR 138 (156)
Q Consensus 72 ~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~-------------v~~~vl~AId~iPLlp~llELVGlgyt~WF~yR 138 (156)
.--.++..+.....+.+-+..++--|+--++..| +=..+++++..+|+=..-|.=-|||-++-|.++
T Consensus 36 ~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 36 GKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp HHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhc
Confidence 3445667777777777777788888888889999 568999999999988888999999999998887
Q ss_pred hhc
Q 031597 139 YLL 141 (156)
Q Consensus 139 yLl 141 (156)
+=-
T Consensus 116 ~~~ 118 (145)
T 2xpp_A 116 NPK 118 (145)
T ss_dssp CTT
T ss_pred CCc
Confidence 643
No 5
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043}
Probab=23.68 E-value=51 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Q 031597 70 TVDADELFSDLKEKWDAVENKSTVLLYGGGAIVAVWLSS 108 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~e~k~~vl~~g~gaival~v~~ 108 (156)
..+.++..+++.+..+..+++..++|.-.|+.+++.+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~ 93 (191)
T 3bdv_A 55 QADLDRWVLAIRRELSVCTQPVILIGHSFGALAACHVVQ 93 (191)
T ss_dssp SCCHHHHHHHHHHHHHTCSSCEEEEEETHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHH
Confidence 346788899999998888878888888899999887654
No 6
>1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A
Probab=23.60 E-value=87 Score=22.52 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=35.1
Q ss_pred cchhHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 031597 71 VDADELFSDLKEKWDAVE--NKSTVLLYGGGAIVAVWLSSTIVGAINSV 117 (156)
Q Consensus 71 ~~~~Ei~~~l~e~Wd~~e--~k~~vl~~g~gaival~v~~~vl~AId~i 117 (156)
.+.++..+++.+..+..+ ++..++|...|+.+++.+..--=+-|+++
T Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~l 128 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGI 128 (302)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEE
T ss_pred ccHHHHHHHHHHHHHHhCCCceEEEEEECCccHHHHHHHHHCHHHHhhe
Confidence 567888999999888887 56778888899999988765433334443
No 7
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=22.79 E-value=1.3e+02 Score=21.34 Aligned_cols=48 Identities=13% Similarity=-0.064 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHHhhhheehhhhhhhcc
Q 031597 95 LYGGGAIVAVWLSSTIVGAINSVP-LLPKLLELIGLGYTGWFVYRYLLF 142 (156)
Q Consensus 95 ~~g~gaival~v~~~vl~AId~iP-Llp~llELVGlgyt~WF~yRyLl~ 142 (156)
-+...+++.+-+...++++.+.++ -....++.+-...++||+.-|+++
T Consensus 9 ~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 9 ELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555666667766554 356788899999999999988874
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.58 E-value=97 Score=18.60 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q 031597 93 VLLYGGGAIVAVWLS 107 (156)
Q Consensus 93 vl~~g~gaival~v~ 107 (156)
+.++.+|.++++-++
T Consensus 13 IAGiVvG~v~gv~li 27 (38)
T 2k1k_A 13 IVAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHH
Confidence 444444544444433
No 9
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A
Probab=19.93 E-value=85 Score=22.55 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=31.1
Q ss_pred ccchhHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHH
Q 031597 70 TVDADELFSDLKEKWDAVE-NKSTVLLYGGGAIVAVWLSST 109 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~e-~k~~vl~~g~gaival~v~~~ 109 (156)
..+.++..+++.+..+..+ ++..++|...|+.+++.+...
T Consensus 90 ~~~~~~~~~~~~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~ 130 (293)
T 3hss_A 90 GFTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVV 130 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHTCCSEEEEEETHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEeeCccHHHHHHHHHH
Confidence 3467888888888888876 466678888999999877654
No 10
>3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A
Probab=19.67 E-value=1.2e+02 Score=21.63 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHHH
Q 031597 70 TVDADELFSDLKEKWDAVE-NKSTVLLYGGGAIVAVWLSSTI 110 (156)
Q Consensus 70 s~~~~Ei~~~l~e~Wd~~e-~k~~vl~~g~gaival~v~~~v 110 (156)
..+.++..+++.+..+..+ ++..++|...|+.+++.+...-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~ 119 (299)
T 3g9x_A 78 DYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRN 119 (299)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHhCCCcEEEEEeCccHHHHHHHHHhc
Confidence 4567888999998888876 4666888889999998776543
Done!