Query 031598
Match_columns 156
No_of_seqs 110 out of 1483
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 02:45:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.3E-34 7.2E-39 188.0 13.3 146 1-154 2-147 (205)
2 KOG0394 Ras-related GTPase [Ge 100.0 4.9E-33 1.1E-37 180.5 11.0 150 1-152 1-151 (210)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.1E-31 4.6E-36 174.5 12.3 135 5-144 19-153 (221)
4 KOG0092 GTPase Rab5/YPT51 and 100.0 5.9E-31 1.3E-35 172.2 12.2 134 5-144 2-135 (200)
5 KOG0098 GTPase Rab2, small G p 100.0 8.5E-31 1.8E-35 170.5 12.5 143 5-155 3-145 (216)
6 cd04121 Rab40 Rab40 subfamily. 100.0 2.9E-30 6.3E-35 174.6 15.0 130 5-141 3-132 (189)
7 KOG0078 GTP-binding protein SE 100.0 3.3E-30 7.1E-35 171.3 13.4 144 4-155 8-151 (207)
8 cd04120 Rab12 Rab12 subfamily. 100.0 7.5E-30 1.6E-34 174.1 14.6 126 9-140 1-126 (202)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.4E-30 1.6E-34 169.2 12.2 144 3-154 9-152 (222)
10 cd04122 Rab14 Rab14 subfamily. 100.0 3.3E-29 7.1E-34 166.4 14.4 127 8-140 2-128 (166)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.5E-29 9.7E-34 170.6 15.0 124 9-132 1-125 (201)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.4E-29 9.5E-34 168.0 14.4 121 5-131 2-123 (182)
13 KOG0086 GTPase Rab4, small G p 100.0 8.3E-30 1.8E-34 161.2 9.5 147 1-155 2-148 (214)
14 cd04131 Rnd Rnd subfamily. Th 100.0 8.9E-29 1.9E-33 166.1 14.0 117 9-131 2-119 (178)
15 cd04133 Rop_like Rop subfamily 100.0 1.8E-28 3.9E-33 164.2 14.9 118 9-132 2-120 (176)
16 cd01867 Rab8_Rab10_Rab13_like 100.0 1.5E-28 3.1E-33 163.5 14.2 122 7-132 2-123 (167)
17 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.4E-28 3E-33 164.4 13.7 128 8-141 2-129 (172)
18 cd01865 Rab3 Rab3 subfamily. 100.0 2.6E-28 5.7E-33 162.0 14.8 120 9-132 2-121 (165)
19 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.3E-28 7.1E-33 162.3 15.2 120 10-132 2-121 (170)
20 KOG0080 GTPase Rab18, small G 100.0 6.4E-29 1.4E-33 158.2 11.1 134 5-143 8-141 (209)
21 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.2E-28 6.9E-33 165.9 15.2 124 9-132 1-144 (202)
22 cd04119 RJL RJL (RabJ-Like) su 100.0 2.2E-28 4.8E-33 162.2 14.0 124 9-132 1-125 (168)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.2E-28 7E-33 168.9 15.3 119 7-131 12-131 (232)
24 cd04127 Rab27A Rab27a subfamil 100.0 2.7E-28 5.8E-33 163.9 14.2 123 7-132 3-135 (180)
25 KOG0079 GTP-binding protein H- 100.0 4.4E-29 9.5E-34 157.0 9.1 133 2-141 2-134 (198)
26 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.3E-28 9.4E-33 161.0 14.4 121 8-132 2-122 (166)
27 cd04117 Rab15 Rab15 subfamily. 100.0 5.5E-28 1.2E-32 159.9 14.5 120 9-132 1-120 (161)
28 cd04116 Rab9 Rab9 subfamily. 100.0 1.6E-27 3.6E-32 158.7 16.7 127 5-131 2-128 (170)
29 cd01868 Rab11_like Rab11-like. 100.0 6.6E-28 1.4E-32 159.9 14.3 122 7-132 2-123 (165)
30 cd04106 Rab23_lke Rab23-like s 100.0 4.9E-28 1.1E-32 159.9 13.6 119 9-132 1-121 (162)
31 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.5E-28 1.6E-32 160.5 14.4 123 7-132 1-124 (170)
32 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-27 2.3E-32 159.0 15.1 122 7-132 2-123 (165)
33 cd04136 Rap_like Rap-like subf 100.0 8.7E-28 1.9E-32 158.8 14.5 120 9-132 2-121 (163)
34 cd01875 RhoG RhoG subfamily. 100.0 1.5E-27 3.3E-32 161.9 15.9 119 8-132 3-122 (191)
35 PTZ00369 Ras-like protein; Pro 100.0 8.4E-28 1.8E-32 162.9 14.4 123 6-132 3-125 (189)
36 cd04110 Rab35 Rab35 subfamily. 100.0 1.2E-27 2.5E-32 163.4 15.0 122 6-132 4-125 (199)
37 PF00071 Ras: Ras family; Int 100.0 3.4E-28 7.3E-33 160.8 11.8 128 10-143 1-128 (162)
38 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-27 2.7E-32 158.4 14.1 120 9-132 2-121 (164)
39 KOG0093 GTPase Rab3, small G p 100.0 7.7E-28 1.7E-32 151.2 12.0 131 6-142 19-149 (193)
40 cd04113 Rab4 Rab4 subfamily. 100.0 1.2E-27 2.6E-32 158.0 13.8 120 9-132 1-120 (161)
41 cd04125 RabA_like RabA-like su 100.0 1.8E-27 3.9E-32 161.1 14.7 120 9-132 1-120 (188)
42 PLN03071 GTP-binding nuclear p 100.0 3.3E-27 7.1E-32 163.3 16.0 122 6-132 11-132 (219)
43 cd04109 Rab28 Rab28 subfamily. 100.0 1.6E-27 3.6E-32 164.5 14.5 123 9-132 1-124 (215)
44 PLN03110 Rab GTPase; Provision 100.0 2.1E-27 4.5E-32 164.0 14.9 123 6-132 10-132 (216)
45 cd01866 Rab2 Rab2 subfamily. 100.0 2.5E-27 5.4E-32 157.7 14.7 122 7-132 3-124 (168)
46 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-27 4E-32 163.7 14.3 122 8-132 2-124 (211)
47 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.1E-27 1.1E-31 157.3 15.4 118 9-132 2-120 (175)
48 cd04124 RabL2 RabL2 subfamily. 100.0 6.9E-27 1.5E-31 154.6 15.8 118 9-131 1-118 (161)
49 PLN00023 GTP-binding protein; 100.0 7.1E-27 1.5E-31 167.0 16.7 128 5-132 18-166 (334)
50 cd04176 Rap2 Rap2 subgroup. T 100.0 2.9E-27 6.2E-32 156.5 13.8 120 9-132 2-121 (163)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.1E-27 1.1E-31 162.1 15.4 118 9-132 2-120 (222)
52 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.8E-27 1E-31 155.4 14.7 121 8-132 2-122 (164)
53 smart00175 RAB Rab subfamily o 100.0 3.7E-27 7.9E-32 155.9 13.9 120 9-132 1-120 (164)
54 cd01862 Rab7 Rab7 subfamily. 100.0 6.7E-27 1.4E-31 155.8 15.1 124 9-132 1-124 (172)
55 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.6E-27 1.6E-31 157.3 15.2 118 9-131 1-118 (182)
56 smart00173 RAS Ras subfamily o 100.0 5.3E-27 1.1E-31 155.3 13.9 120 9-132 1-120 (164)
57 cd04118 Rab24 Rab24 subfamily. 100.0 9.6E-27 2.1E-31 158.1 15.2 119 9-132 1-120 (193)
58 cd04112 Rab26 Rab26 subfamily. 100.0 5.2E-27 1.1E-31 159.3 13.8 120 9-132 1-121 (191)
59 KOG0095 GTPase Rab30, small G 100.0 2.2E-27 4.8E-32 149.7 11.0 130 5-140 4-133 (213)
60 cd00877 Ran Ran (Ras-related n 99.9 1.8E-26 4E-31 153.3 15.8 119 9-132 1-119 (166)
61 cd01861 Rab6 Rab6 subfamily. 99.9 1.2E-26 2.6E-31 153.1 14.7 120 9-132 1-120 (161)
62 cd04132 Rho4_like Rho4-like su 99.9 8.4E-27 1.8E-31 157.6 14.0 118 9-132 1-120 (187)
63 cd01871 Rac1_like Rac1-like su 99.9 2E-26 4.4E-31 154.2 15.6 118 9-132 2-120 (174)
64 PLN03108 Rab family protein; P 99.9 1.4E-26 3.1E-31 159.2 14.7 128 7-140 5-132 (210)
65 cd01892 Miro2 Miro2 subfamily. 99.9 1.7E-26 3.6E-31 154.0 14.5 121 6-132 2-123 (169)
66 cd04140 ARHI_like ARHI subfami 99.9 2.9E-26 6.4E-31 152.1 15.1 128 9-140 2-129 (165)
67 cd04144 Ras2 Ras2 subfamily. 99.9 7.7E-27 1.7E-31 158.3 12.6 121 10-132 1-121 (190)
68 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.9E-26 8.5E-31 150.5 15.6 120 9-132 2-121 (162)
69 cd01860 Rab5_related Rab5-rela 99.9 2.3E-26 5E-31 152.1 14.3 120 9-132 2-121 (163)
70 cd01863 Rab18 Rab18 subfamily. 99.9 4E-26 8.7E-31 150.7 15.1 121 9-132 1-121 (161)
71 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.8E-26 6E-31 151.9 13.7 119 9-132 1-122 (164)
72 cd04134 Rho3 Rho3 subfamily. 99.9 5.1E-26 1.1E-30 154.2 15.2 118 9-132 1-119 (189)
73 cd04143 Rhes_like Rhes_like su 99.9 2.8E-26 6.1E-31 160.9 13.6 123 9-132 1-128 (247)
74 cd04142 RRP22 RRP22 subfamily. 99.9 5.6E-26 1.2E-30 154.9 14.2 123 9-132 1-131 (198)
75 cd04123 Rab21 Rab21 subfamily. 99.9 6.8E-26 1.5E-30 149.4 14.1 120 9-132 1-120 (162)
76 smart00176 RAN Ran (Ras-relate 99.9 8E-26 1.7E-30 154.1 14.6 113 14-131 1-113 (200)
77 KOG0091 GTPase Rab39, small G 99.9 3.4E-27 7.3E-32 150.8 7.1 142 6-153 6-148 (213)
78 cd04114 Rab30 Rab30 subfamily. 99.9 2.1E-25 4.6E-30 148.3 16.2 123 6-132 5-127 (169)
79 PLN03118 Rab family protein; P 99.9 1.3E-25 2.8E-30 154.6 15.2 125 4-132 10-135 (211)
80 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.6E-26 5.6E-31 152.4 11.0 114 10-132 1-114 (164)
81 cd00154 Rab Rab family. Rab G 99.9 1.6E-25 3.5E-30 146.7 14.0 120 9-132 1-120 (159)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 2.3E-25 5E-30 148.2 14.7 120 9-132 2-121 (168)
83 cd04126 Rab20 Rab20 subfamily. 99.9 1.2E-25 2.6E-30 155.1 13.7 114 9-131 1-114 (220)
84 smart00174 RHO Rho (Ras homolo 99.9 2.5E-25 5.4E-30 148.7 14.8 116 11-132 1-117 (174)
85 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3.5E-25 7.6E-30 148.0 15.0 118 9-132 1-119 (173)
86 cd04146 RERG_RasL11_like RERG/ 99.9 7.6E-26 1.6E-30 150.1 11.5 120 10-132 1-121 (165)
87 cd04148 RGK RGK subfamily. Th 99.9 3.2E-25 7E-30 153.6 14.2 125 9-140 1-127 (221)
88 cd04103 Centaurin_gamma Centau 99.9 4.2E-25 9.1E-30 145.7 13.5 122 9-140 1-122 (158)
89 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.6E-25 7.8E-30 147.3 12.5 115 10-132 1-115 (167)
90 cd04135 Tc10 TC10 subfamily. 99.9 1.6E-24 3.5E-29 144.8 15.2 118 9-132 1-119 (174)
91 KOG0395 Ras-related GTPase [Ge 99.9 3.7E-25 8.1E-30 150.0 11.5 132 7-144 2-133 (196)
92 cd00876 Ras Ras family. The R 99.9 1.1E-24 2.4E-29 143.3 13.3 119 10-132 1-119 (160)
93 cd04149 Arf6 Arf6 subfamily. 99.9 8.3E-25 1.8E-29 145.7 12.7 118 6-131 7-124 (168)
94 smart00177 ARF ARF-like small 99.9 1.1E-24 2.4E-29 146.0 13.3 118 7-132 12-129 (175)
95 cd01873 RhoBTB RhoBTB subfamil 99.9 1E-24 2.2E-29 148.3 13.2 117 8-131 2-134 (195)
96 cd01870 RhoA_like RhoA-like su 99.9 3.1E-24 6.8E-29 143.5 15.0 118 9-132 2-120 (175)
97 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.8E-24 3.8E-29 142.9 13.5 116 9-132 1-116 (159)
98 cd04139 RalA_RalB RalA/RalB su 99.9 1.9E-24 4.1E-29 142.8 13.5 120 9-132 1-120 (164)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.2E-24 4.8E-29 145.4 14.1 120 8-131 3-123 (183)
100 PLN00223 ADP-ribosylation fact 99.9 2.2E-24 4.7E-29 145.3 13.9 119 6-132 15-133 (181)
101 cd04147 Ras_dva Ras-dva subfam 99.9 1.8E-24 3.9E-29 147.6 13.6 119 10-132 1-119 (198)
102 cd04137 RheB Rheb (Ras Homolog 99.9 3.6E-24 7.7E-29 143.9 13.6 120 9-132 2-121 (180)
103 PF08477 Miro: Miro-like prote 99.9 3.8E-24 8.3E-29 134.7 12.9 114 10-128 1-119 (119)
104 PTZ00132 GTP-binding nuclear p 99.9 1.3E-23 2.7E-28 145.1 16.3 124 4-132 5-128 (215)
105 cd00157 Rho Rho (Ras homology) 99.9 9.1E-24 2E-28 140.6 14.9 119 9-133 1-120 (171)
106 cd01893 Miro1 Miro1 subfamily. 99.9 7.2E-24 1.6E-28 140.8 14.3 117 9-132 1-118 (166)
107 cd04154 Arl2 Arl2 subfamily. 99.9 6.4E-24 1.4E-28 141.9 14.0 120 5-132 11-130 (173)
108 cd04158 ARD1 ARD1 subfamily. 99.9 6.9E-24 1.5E-28 141.3 13.9 115 10-132 1-115 (169)
109 KOG0088 GTPase Rab21, small G 99.9 1.8E-25 3.9E-30 142.3 5.3 135 5-145 10-144 (218)
110 PTZ00133 ADP-ribosylation fact 99.9 8.3E-24 1.8E-28 142.5 13.6 118 7-132 16-133 (182)
111 KOG0393 Ras-related small GTPa 99.9 1.7E-24 3.7E-29 144.5 8.8 121 6-132 2-124 (198)
112 cd04157 Arl6 Arl6 subfamily. 99.9 9.8E-24 2.1E-28 139.3 12.4 118 10-132 1-119 (162)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.8E-24 1.5E-28 139.9 11.4 115 10-131 1-115 (160)
114 KOG0081 GTPase Rab27, small G 99.9 1.9E-25 4.1E-30 142.3 1.3 143 6-155 7-158 (219)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 5.9E-23 1.3E-27 137.4 13.2 118 7-132 14-131 (174)
116 cd04129 Rho2 Rho2 subfamily. 99.9 1.5E-22 3.3E-27 136.9 15.1 118 9-132 2-120 (187)
117 cd00878 Arf_Arl Arf (ADP-ribos 99.9 6.9E-23 1.5E-27 134.8 12.8 115 10-132 1-115 (158)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.7E-23 1.2E-27 136.3 11.8 116 10-132 1-122 (167)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1.4E-22 2.9E-27 133.6 13.4 115 10-132 1-115 (158)
120 KOG0073 GTP-binding ADP-ribosy 99.9 8.1E-23 1.8E-27 130.7 11.5 120 5-132 13-132 (185)
121 PF00025 Arf: ADP-ribosylation 99.9 5.3E-23 1.1E-27 137.8 11.2 120 5-132 11-130 (175)
122 smart00178 SAR Sar1p-like memb 99.9 1.7E-22 3.7E-27 136.4 13.3 119 6-132 15-133 (184)
123 KOG0097 GTPase Rab14, small G 99.9 2.4E-23 5.2E-28 130.5 8.4 141 5-153 8-148 (215)
124 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.4E-24 2.9E-29 134.7 2.0 136 12-155 1-137 (192)
125 cd00879 Sar1 Sar1 subfamily. 99.9 3.4E-22 7.3E-27 135.4 13.7 118 6-131 17-134 (190)
126 cd04159 Arl10_like Arl10-like 99.9 5.3E-22 1.2E-26 130.0 13.4 115 11-132 2-116 (159)
127 COG1100 GTPase SAR1 and relate 99.9 1.1E-21 2.5E-26 135.5 14.4 122 8-133 5-127 (219)
128 KOG0070 GTP-binding ADP-ribosy 99.9 1.9E-21 4.1E-26 127.1 10.7 120 5-132 14-133 (181)
129 TIGR00231 small_GTP small GTP- 99.9 1.1E-20 2.5E-25 123.3 14.3 120 9-132 2-123 (161)
130 KOG4252 GTP-binding protein [S 99.9 2E-23 4.3E-28 135.6 0.9 121 7-132 19-139 (246)
131 cd04105 SR_beta Signal recogni 99.9 1.7E-21 3.7E-26 133.3 10.3 121 10-132 2-124 (203)
132 cd04155 Arl3 Arl3 subfamily. 99.9 1.5E-20 3.3E-25 125.4 13.9 120 5-132 11-130 (173)
133 cd01890 LepA LepA subfamily. 99.9 1.3E-20 2.8E-25 126.4 11.6 116 9-132 1-134 (179)
134 cd01878 HflX HflX subfamily. 99.9 2E-20 4.2E-25 128.2 12.2 121 6-132 39-168 (204)
135 cd01898 Obg Obg subfamily. Th 99.8 2.1E-20 4.5E-25 124.3 11.6 120 10-132 2-129 (170)
136 cd04171 SelB SelB subfamily. 99.8 2.6E-20 5.7E-25 122.9 11.9 113 9-132 1-119 (164)
137 cd01891 TypA_BipA TypA (tyrosi 99.8 1.5E-20 3.3E-25 127.8 10.6 117 8-132 2-132 (194)
138 cd01897 NOG NOG1 is a nucleola 99.8 4.7E-20 1E-24 122.4 12.2 117 9-132 1-128 (168)
139 KOG0075 GTP-binding ADP-ribosy 99.8 3.3E-21 7.3E-26 121.4 6.0 118 8-132 20-137 (186)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.8E-20 1.5E-24 121.6 11.9 115 10-132 2-117 (168)
141 cd00882 Ras_like_GTPase Ras-li 99.8 2E-19 4.3E-24 116.4 12.9 116 13-132 1-117 (157)
142 TIGR03156 GTP_HflX GTP-binding 99.8 2E-19 4.2E-24 132.0 12.4 120 7-132 188-316 (351)
143 KOG0071 GTP-binding ADP-ribosy 99.8 2.5E-19 5.5E-24 112.1 9.6 119 7-133 16-134 (180)
144 TIGR00450 mnmE_trmE_thdF tRNA 99.8 7.3E-19 1.6E-23 132.3 14.0 116 6-132 201-325 (442)
145 PTZ00099 rab6; Provisional 99.8 4.7E-19 1E-23 118.7 11.2 97 32-132 4-100 (176)
146 cd01879 FeoB Ferrous iron tran 99.8 4.5E-19 9.8E-24 116.4 10.8 108 13-132 1-116 (158)
147 PRK12299 obgE GTPase CgtA; Rev 99.8 1E-18 2.2E-23 127.4 13.1 121 9-132 159-286 (335)
148 KOG0074 GTP-binding ADP-ribosy 99.8 1E-18 2.2E-23 109.6 10.2 122 4-132 13-134 (185)
149 TIGR03598 GTPase_YsxC ribosome 99.8 3.7E-19 8.1E-24 119.6 8.9 117 5-132 15-144 (179)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.8 2.8E-18 6.1E-23 112.3 12.5 112 9-132 2-122 (157)
151 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.8E-18 4E-23 113.4 10.9 122 6-132 8-129 (216)
152 TIGR02528 EutP ethanolamine ut 99.8 3.1E-19 6.7E-24 115.5 7.2 96 10-131 2-102 (142)
153 TIGR01393 lepA GTP-binding pro 99.8 1.7E-18 3.8E-23 134.4 12.6 118 7-132 2-137 (595)
154 cd01881 Obg_like The Obg-like 99.8 1.6E-18 3.4E-23 115.7 10.5 119 13-132 1-135 (176)
155 PRK03003 GTP-binding protein D 99.8 3.2E-18 6.8E-23 130.4 13.1 116 7-132 37-161 (472)
156 PRK05291 trmE tRNA modificatio 99.8 2.7E-18 5.9E-23 129.8 12.2 114 7-132 214-336 (449)
157 PRK04213 GTP-binding protein; 99.8 2.9E-18 6.3E-23 117.1 10.9 117 5-132 6-145 (201)
158 PF02421 FeoB_N: Ferrous iron 99.8 4.5E-19 9.8E-24 115.5 6.3 113 9-133 1-121 (156)
159 PRK15494 era GTPase Era; Provi 99.8 3E-18 6.5E-23 125.4 11.1 116 6-132 50-175 (339)
160 TIGR02729 Obg_CgtA Obg family 99.8 6.6E-18 1.4E-22 123.0 12.6 121 9-132 158-288 (329)
161 PRK11058 GTPase HflX; Provisio 99.8 6.5E-18 1.4E-22 126.6 12.7 120 8-132 197-324 (426)
162 KOG3883 Ras family small GTPas 99.8 8.7E-18 1.9E-22 106.7 11.1 137 7-151 8-148 (198)
163 TIGR00436 era GTP-binding prot 99.8 6.9E-18 1.5E-22 120.2 12.0 112 10-132 2-122 (270)
164 KOG1673 Ras GTPases [General f 99.8 2.4E-18 5.3E-23 109.5 8.2 121 6-131 18-138 (205)
165 TIGR00487 IF-2 translation ini 99.8 1.1E-17 2.5E-22 129.5 13.6 118 6-132 85-202 (587)
166 cd01889 SelB_euk SelB subfamil 99.8 4.6E-18 9.9E-23 115.5 9.9 116 9-132 1-135 (192)
167 cd00881 GTP_translation_factor 99.8 8.6E-18 1.9E-22 113.3 11.2 113 10-132 1-129 (189)
168 cd04169 RF3 RF3 subfamily. Pe 99.8 8.7E-18 1.9E-22 119.3 11.0 118 8-133 2-139 (267)
169 PRK05306 infB translation init 99.8 1.9E-17 4.1E-22 131.3 13.5 118 5-132 287-404 (787)
170 cd04168 TetM_like Tet(M)-like 99.8 9.7E-18 2.1E-22 117.2 10.4 115 10-132 1-131 (237)
171 cd01895 EngA2 EngA2 subfamily. 99.8 3E-17 6.6E-22 108.9 12.2 115 8-132 2-128 (174)
172 cd01894 EngA1 EngA1 subfamily. 99.8 1.6E-17 3.5E-22 108.8 10.6 111 12-132 1-120 (157)
173 PRK03003 GTP-binding protein D 99.8 2E-17 4.4E-22 126.0 12.7 116 7-132 210-337 (472)
174 PRK00093 GTP-binding protein D 99.8 2.5E-17 5.4E-22 124.6 12.7 111 9-131 2-123 (435)
175 cd01885 EF2 EF2 (for archaea a 99.7 1.3E-17 2.9E-22 115.2 10.0 114 9-130 1-138 (222)
176 PRK12297 obgE GTPase CgtA; Rev 99.7 5E-17 1.1E-21 121.4 13.6 120 9-131 159-288 (424)
177 KOG0077 Vesicle coat complex C 99.7 4.3E-18 9.4E-23 109.4 6.8 118 7-132 19-136 (193)
178 cd04167 Snu114p Snu114p subfam 99.7 2.5E-17 5.4E-22 113.6 10.6 114 9-130 1-136 (213)
179 CHL00189 infB translation init 99.7 2.2E-17 4.8E-22 129.9 11.3 119 6-132 242-362 (742)
180 PRK12296 obgE GTPase CgtA; Rev 99.7 4.3E-17 9.3E-22 123.4 11.9 123 8-132 159-299 (500)
181 cd04163 Era Era subfamily. Er 99.7 6.1E-17 1.3E-21 106.7 11.3 116 7-131 2-125 (168)
182 TIGR00475 selB selenocysteine- 99.7 6.1E-17 1.3E-21 125.7 12.9 111 9-132 1-118 (581)
183 PF00009 GTP_EFTU: Elongation 99.7 1.5E-17 3.4E-22 112.5 8.1 118 7-132 2-137 (188)
184 PRK00089 era GTPase Era; Revie 99.7 7.5E-17 1.6E-21 116.2 12.0 117 6-131 3-127 (292)
185 PRK05433 GTP-binding protein L 99.7 4.8E-17 1E-21 126.6 11.8 119 6-132 5-141 (600)
186 PRK10218 GTP-binding protein; 99.7 1.1E-16 2.4E-21 124.3 13.6 118 7-132 4-135 (607)
187 COG1084 Predicted GTPase [Gene 99.7 9.4E-17 2E-21 113.9 12.0 123 2-132 162-295 (346)
188 TIGR03594 GTPase_EngA ribosome 99.7 7.3E-17 1.6E-21 121.8 12.1 113 10-132 1-122 (429)
189 PRK00454 engB GTP-binding prot 99.7 8.7E-17 1.9E-21 109.3 11.2 116 6-132 22-150 (196)
190 PRK12298 obgE GTPase CgtA; Rev 99.7 1.5E-16 3.1E-21 118.2 12.2 121 9-132 160-290 (390)
191 KOG1707 Predicted Ras related/ 99.7 4.7E-17 1E-21 122.4 9.6 125 5-133 6-131 (625)
192 TIGR03594 GTPase_EngA ribosome 99.7 2.7E-16 5.9E-21 118.7 13.8 115 6-130 170-296 (429)
193 PRK12317 elongation factor 1-a 99.7 6.8E-17 1.5E-21 121.8 10.4 123 5-132 3-154 (425)
194 TIGR00491 aIF-2 translation in 99.7 1.5E-16 3.3E-21 123.1 11.7 114 7-131 3-135 (590)
195 TIGR01394 TypA_BipA GTP-bindin 99.7 1.3E-16 2.8E-21 123.9 10.9 116 9-132 2-131 (594)
196 TIGR00483 EF-1_alpha translati 99.7 8.9E-17 1.9E-21 121.2 9.5 120 5-131 4-155 (426)
197 cd01888 eIF2_gamma eIF2-gamma 99.7 1.6E-16 3.6E-21 108.8 9.9 118 9-132 1-152 (203)
198 PF01926 MMR_HSR1: 50S ribosom 99.7 4.4E-16 9.6E-21 97.5 10.8 106 10-126 1-116 (116)
199 cd01896 DRG The developmentall 99.7 7.7E-16 1.7E-20 107.4 13.1 83 10-94 2-91 (233)
200 cd01850 CDC_Septin CDC/Septin. 99.7 5.9E-16 1.3E-20 110.4 12.7 117 8-132 4-158 (276)
201 COG2229 Predicted GTPase [Gene 99.7 5.1E-16 1.1E-20 101.7 11.3 119 4-132 6-136 (187)
202 PRK04004 translation initiatio 99.7 4.1E-16 8.8E-21 121.1 12.6 115 5-130 3-136 (586)
203 cd01886 EF-G Elongation factor 99.7 7.6E-16 1.6E-20 109.5 12.8 113 10-132 1-131 (270)
204 COG1159 Era GTPase [General fu 99.7 1.8E-16 3.8E-21 111.4 9.3 119 6-133 4-130 (298)
205 cd04166 CysN_ATPS CysN_ATPS su 99.7 3.3E-16 7.2E-21 107.6 10.5 114 10-132 1-145 (208)
206 PRK00741 prfC peptide chain re 99.7 1.4E-16 2.9E-21 122.3 9.3 121 5-133 7-147 (526)
207 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.8E-17 1.7E-21 111.5 7.1 129 10-144 1-138 (232)
208 PF09439 SRPRB: Signal recogni 99.7 2.7E-17 5.8E-22 109.5 4.6 120 8-132 3-127 (181)
209 cd04170 EF-G_bact Elongation f 99.7 3E-16 6.4E-21 111.8 10.3 113 10-132 1-131 (268)
210 PRK09554 feoB ferrous iron tra 99.7 5.5E-16 1.2E-20 123.3 12.8 113 8-132 3-127 (772)
211 PRK09518 bifunctional cytidyla 99.7 4.7E-16 1E-20 123.6 12.1 116 7-132 449-576 (712)
212 PRK00093 GTP-binding protein D 99.7 1.3E-15 2.8E-20 115.2 14.0 117 6-132 171-299 (435)
213 PRK09518 bifunctional cytidyla 99.7 9.2E-16 2E-20 121.9 13.4 116 7-132 274-398 (712)
214 cd00880 Era_like Era (E. coli 99.7 5E-16 1.1E-20 101.3 9.9 111 13-132 1-119 (163)
215 cd01884 EF_Tu EF-Tu subfamily. 99.7 9E-16 2E-20 104.3 11.3 117 8-132 2-133 (195)
216 TIGR00503 prfC peptide chain r 99.7 4.1E-16 8.9E-21 119.7 10.6 120 5-132 8-147 (527)
217 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-15 3E-20 103.7 11.3 112 8-131 1-121 (197)
218 KOG0076 GTP-binding ADP-ribosy 99.7 1.4E-16 3E-21 103.2 5.2 120 6-132 15-141 (197)
219 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-15 2.5E-20 105.8 9.9 116 10-131 1-151 (219)
220 KOG4423 GTP-binding protein-li 99.7 3.4E-19 7.3E-24 116.5 -7.5 126 7-132 24-150 (229)
221 PRK15467 ethanolamine utilizat 99.7 5.3E-16 1.2E-20 102.3 7.5 100 10-132 3-106 (158)
222 cd01876 YihA_EngB The YihA (En 99.6 3.2E-15 7E-20 98.6 11.0 110 10-132 1-125 (170)
223 TIGR00437 feoB ferrous iron tr 99.6 1.5E-15 3.3E-20 118.2 10.6 106 15-132 1-114 (591)
224 PRK13351 elongation factor G; 99.6 1.5E-15 3.3E-20 120.5 10.7 115 6-132 6-140 (687)
225 COG0218 Predicted GTPase [Gene 99.6 4.7E-15 1E-19 99.1 10.7 116 7-133 23-151 (200)
226 PRK12735 elongation factor Tu; 99.6 5.6E-15 1.2E-19 110.4 12.0 121 4-132 8-143 (396)
227 COG1160 Predicted GTPases [Gen 99.6 2.6E-15 5.7E-20 110.8 9.8 114 9-132 4-127 (444)
228 TIGR00484 EF-G translation elo 99.6 8.5E-15 1.8E-19 116.2 13.4 118 5-132 7-142 (689)
229 TIGR00490 aEF-2 translation el 99.6 2.7E-15 5.8E-20 119.3 9.8 121 4-132 15-153 (720)
230 PLN03126 Elongation factor Tu; 99.6 1.1E-14 2.5E-19 110.6 12.3 121 4-132 77-212 (478)
231 CHL00071 tufA elongation facto 99.6 1.6E-14 3.4E-19 108.5 12.6 121 4-132 8-143 (409)
232 COG0486 ThdF Predicted GTPase 99.6 1.4E-14 3.1E-19 107.2 12.1 115 7-132 216-339 (454)
233 PRK12736 elongation factor Tu; 99.6 1E-14 2.3E-19 108.9 11.5 120 5-132 9-143 (394)
234 KOG1423 Ras-like GTPase ERA [C 99.6 8.5E-15 1.8E-19 103.1 10.0 121 4-132 68-200 (379)
235 PLN00043 elongation factor 1-a 99.6 6.9E-16 1.5E-20 116.6 4.7 120 4-131 3-159 (447)
236 PRK04000 translation initiatio 99.6 7.3E-15 1.6E-19 110.2 9.9 123 3-132 4-154 (411)
237 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 9.8E-15 2.1E-19 99.5 9.6 118 9-132 1-131 (196)
238 TIGR00485 EF-Tu translation el 99.6 1.5E-14 3.4E-19 108.1 11.3 118 5-132 9-143 (394)
239 TIGR00991 3a0901s02IAP34 GTP-b 99.6 4.7E-14 1E-18 100.9 12.7 127 2-132 32-168 (313)
240 PRK00007 elongation factor G; 99.6 1.7E-14 3.7E-19 114.5 11.3 119 5-133 7-143 (693)
241 TIGR03680 eif2g_arch translati 99.6 9.7E-15 2.1E-19 109.5 9.3 121 6-132 2-149 (406)
242 PRK12739 elongation factor G; 99.6 1.3E-14 2.8E-19 115.2 10.4 117 6-132 6-140 (691)
243 PLN03127 Elongation factor Tu; 99.6 6.9E-14 1.5E-18 105.7 12.5 118 5-132 58-192 (447)
244 PLN00116 translation elongatio 99.6 1.8E-14 4E-19 116.2 9.8 120 3-130 14-163 (843)
245 PRK00049 elongation factor Tu; 99.6 6.5E-14 1.4E-18 104.7 12.1 120 4-131 8-142 (396)
246 PTZ00141 elongation factor 1- 99.6 3.3E-14 7.1E-19 107.6 10.4 117 5-130 4-158 (446)
247 cd01853 Toc34_like Toc34-like 99.6 7.9E-14 1.7E-18 98.0 11.4 123 5-132 28-164 (249)
248 PRK10512 selenocysteinyl-tRNA- 99.6 7.5E-14 1.6E-18 109.1 12.3 114 10-132 2-119 (614)
249 TIGR02034 CysN sulfate adenyly 99.6 1.5E-14 3.2E-19 108.5 8.1 115 9-132 1-148 (406)
250 KOG0072 GTP-binding ADP-ribosy 99.6 7.5E-15 1.6E-19 92.6 5.1 118 7-132 17-134 (182)
251 PRK05124 cysN sulfate adenylyl 99.5 3E-14 6.6E-19 108.5 8.8 119 5-132 24-175 (474)
252 COG1160 Predicted GTPases [Gen 99.5 2.2E-14 4.7E-19 106.0 7.7 116 7-132 177-304 (444)
253 KOG0462 Elongation factor-type 99.5 3.9E-14 8.3E-19 106.4 8.9 119 6-133 58-193 (650)
254 KOG1489 Predicted GTP-binding 99.5 1E-13 2.2E-18 98.1 10.1 122 8-132 196-327 (366)
255 COG3596 Predicted GTPase [Gene 99.5 2.1E-14 4.5E-19 100.0 6.3 120 5-132 36-163 (296)
256 PTZ00416 elongation factor 2; 99.5 7.3E-14 1.6E-18 112.6 9.9 118 5-130 16-157 (836)
257 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.7E-13 5.8E-18 94.1 11.2 113 10-132 1-153 (224)
258 COG0370 FeoB Fe2+ transport sy 99.5 1.6E-13 3.5E-18 105.7 9.9 113 8-132 3-123 (653)
259 COG2262 HflX GTPases [General 99.5 4.7E-13 1E-17 97.8 11.6 123 5-132 189-319 (411)
260 PRK05506 bifunctional sulfate 99.5 8.6E-14 1.9E-18 109.6 8.3 120 5-131 21-171 (632)
261 PF10662 PduV-EutP: Ethanolami 99.5 1E-13 2.2E-18 88.8 6.9 98 9-131 2-103 (143)
262 PRK07560 elongation factor EF- 99.5 8.5E-14 1.8E-18 111.1 7.8 121 4-132 16-154 (731)
263 KOG1707 Predicted Ras related/ 99.5 8.7E-13 1.9E-17 99.8 12.6 139 4-154 421-559 (625)
264 COG5256 TEF1 Translation elong 99.5 1.6E-13 3.4E-18 100.3 8.2 137 4-147 3-173 (428)
265 COG1163 DRG Predicted GTPase [ 99.5 1.5E-12 3.3E-17 92.6 11.3 87 7-95 62-155 (365)
266 PF04548 AIG1: AIG1 family; I 99.5 2.4E-13 5.2E-18 93.7 7.2 119 9-133 1-132 (212)
267 COG0481 LepA Membrane GTPase L 99.4 4.6E-13 1E-17 99.4 8.3 122 4-133 5-144 (603)
268 PRK12740 elongation factor G; 99.4 8.1E-13 1.8E-17 104.8 10.2 109 14-132 1-127 (668)
269 cd00066 G-alpha G protein alph 99.4 9.7E-13 2.1E-17 95.7 9.3 79 56-134 160-245 (317)
270 KOG0090 Signal recognition par 99.4 2.1E-13 4.5E-18 91.5 5.2 122 6-133 36-161 (238)
271 KOG1145 Mitochondrial translat 99.4 5.6E-13 1.2E-17 100.3 7.8 122 6-136 151-272 (683)
272 COG0480 FusA Translation elong 99.4 1.8E-12 3.8E-17 102.0 9.9 121 5-133 7-144 (697)
273 COG2895 CysN GTPases - Sulfate 99.4 1.8E-12 4E-17 93.1 8.2 138 5-153 3-173 (431)
274 KOG0468 U5 snRNP-specific prot 99.4 3.5E-12 7.7E-17 98.0 10.1 121 2-130 122-262 (971)
275 KOG1490 GTP-binding protein CR 99.4 4.6E-13 9.9E-18 99.9 5.0 125 1-132 161-296 (620)
276 COG1217 TypA Predicted membran 99.4 1.3E-12 2.9E-17 96.8 7.0 119 7-133 4-136 (603)
277 smart00275 G_alpha G protein a 99.4 3.7E-12 8.1E-17 93.5 9.3 77 57-133 184-267 (342)
278 COG0532 InfB Translation initi 99.4 5.2E-12 1.1E-16 95.0 9.6 123 7-137 4-127 (509)
279 COG4108 PrfC Peptide chain rel 99.4 1.3E-12 2.9E-17 96.1 6.2 140 6-155 10-172 (528)
280 PF00350 Dynamin_N: Dynamin fa 99.3 1.9E-11 4.2E-16 81.1 10.6 62 59-127 103-168 (168)
281 COG0536 Obg Predicted GTPase [ 99.3 9.8E-12 2.1E-16 89.1 9.5 120 10-132 161-290 (369)
282 KOG1191 Mitochondrial GTPase [ 99.3 4.4E-12 9.6E-17 94.5 7.8 125 6-132 266-404 (531)
283 PF05049 IIGP: Interferon-indu 99.3 2.6E-12 5.6E-17 94.3 6.4 113 6-129 33-153 (376)
284 smart00010 small_GTPase Small 99.3 7.3E-12 1.6E-16 78.8 7.4 91 9-132 1-92 (124)
285 PF00735 Septin: Septin; Inte 99.3 8.7E-11 1.9E-15 84.0 13.0 117 8-132 4-157 (281)
286 TIGR00993 3a0901s04IAP86 chlor 99.3 5.7E-11 1.2E-15 92.2 12.8 121 8-132 118-251 (763)
287 KOG3886 GTP-binding protein [S 99.3 1.9E-12 4.2E-17 88.1 4.2 138 8-148 4-147 (295)
288 smart00053 DYNc Dynamin, GTPas 99.3 2.4E-11 5.2E-16 84.8 9.4 69 57-132 125-207 (240)
289 KOG1532 GTPase XAB1, interacts 99.3 4.3E-13 9.4E-18 93.4 0.6 74 57-133 116-197 (366)
290 PTZ00327 eukaryotic translatio 99.3 1.7E-11 3.8E-16 92.9 8.9 121 5-132 31-186 (460)
291 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.9E-11 8.5E-16 83.4 9.6 111 6-132 37-148 (225)
292 KOG0082 G-protein alpha subuni 99.2 4.7E-11 1E-15 86.8 8.0 90 49-140 189-285 (354)
293 cd01899 Ygr210 Ygr210 subfamil 99.2 1.9E-10 4.1E-15 83.6 10.5 82 11-92 1-111 (318)
294 PRK09602 translation-associate 99.2 4E-10 8.7E-15 84.2 11.6 83 9-91 2-113 (396)
295 PRK09866 hypothetical protein; 99.2 5.9E-10 1.3E-14 86.5 12.2 69 57-131 230-303 (741)
296 PTZ00258 GTP-binding protein; 99.2 3.4E-10 7.4E-15 84.0 10.0 87 5-91 18-126 (390)
297 PRK14845 translation initiatio 99.2 3.3E-10 7.1E-15 92.7 10.4 102 19-131 472-592 (1049)
298 PF03029 ATP_bind_1: Conserved 99.2 4.3E-11 9.4E-16 83.7 4.5 71 58-132 92-171 (238)
299 KOG1954 Endocytosis/signaling 99.1 4.9E-10 1.1E-14 81.4 9.1 117 9-132 59-226 (532)
300 KOG3905 Dynein light intermedi 99.1 5E-10 1.1E-14 80.1 8.8 99 8-109 52-157 (473)
301 PRK09601 GTP-binding protein Y 99.1 4.3E-10 9.3E-15 82.6 8.3 83 9-91 3-107 (364)
302 cd01900 YchF YchF subfamily. 99.1 3.4E-10 7.4E-15 80.5 6.6 81 11-91 1-103 (274)
303 KOG0467 Translation elongation 99.1 8.7E-10 1.9E-14 86.1 8.3 120 3-130 4-137 (887)
304 KOG0458 Elongation factor 1 al 99.0 5.5E-10 1.2E-14 84.9 6.8 131 5-144 174-340 (603)
305 COG5019 CDC3 Septin family pro 99.0 5.7E-09 1.2E-13 75.8 11.0 118 7-132 22-177 (373)
306 PF05783 DLIC: Dynein light in 99.0 4.9E-09 1.1E-13 79.7 10.1 94 7-103 24-124 (472)
307 PRK13768 GTPase; Provisional 99.0 3.6E-09 7.8E-14 74.9 8.4 70 58-132 98-177 (253)
308 COG4917 EutP Ethanolamine util 99.0 5.4E-10 1.2E-14 69.2 3.5 100 9-132 2-105 (148)
309 KOG2655 Septin family protein 99.0 9.7E-09 2.1E-13 75.0 10.1 116 8-132 21-173 (366)
310 TIGR02836 spore_IV_A stage IV 98.9 1.3E-08 2.8E-13 75.6 10.5 25 7-31 16-40 (492)
311 KOG0461 Selenocysteine-specifi 98.9 7E-09 1.5E-13 75.0 8.5 127 6-140 5-145 (522)
312 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.5E-09 7.6E-14 68.5 6.2 54 10-67 85-138 (141)
313 cd04178 Nucleostemin_like Nucl 98.9 5.3E-09 1.1E-13 69.8 6.8 55 8-66 117-171 (172)
314 KOG1547 Septin CDC10 and relat 98.9 1.5E-08 3.3E-13 69.8 9.0 115 8-131 46-198 (336)
315 KOG1486 GTP-binding protein DR 98.9 4.7E-08 1E-12 68.0 11.1 98 7-106 61-166 (364)
316 KOG1144 Translation initiation 98.9 6.4E-09 1.4E-13 81.4 7.4 117 7-131 474-606 (1064)
317 KOG3887 Predicted small GTPase 98.9 7.2E-09 1.6E-13 71.5 6.8 121 9-133 28-151 (347)
318 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.6E-09 1.9E-13 67.8 6.9 56 7-66 101-156 (157)
319 KOG0464 Elongation factor G [T 98.8 1.5E-09 3.4E-14 80.1 2.6 119 6-132 35-169 (753)
320 KOG0410 Predicted GTP binding 98.8 8.2E-09 1.8E-13 73.9 6.0 126 6-132 176-309 (410)
321 cd01856 YlqF YlqF. Proteins o 98.8 2.1E-08 4.7E-13 66.9 6.8 57 7-67 114-170 (171)
322 cd01855 YqeH YqeH. YqeH is an 98.8 2E-08 4.4E-13 68.0 5.8 55 9-66 128-189 (190)
323 TIGR03596 GTPase_YlqF ribosome 98.8 3.6E-08 7.9E-13 70.6 7.3 57 7-67 117-173 (276)
324 PRK09563 rbgA GTPase YlqF; Rev 98.7 5.4E-08 1.2E-12 70.1 7.9 59 6-68 119-177 (287)
325 TIGR00092 GTP-binding protein 98.7 6.5E-08 1.4E-12 71.4 7.9 84 9-92 3-109 (368)
326 COG5192 BMS1 GTP-binding prote 98.7 4.5E-08 9.7E-13 75.0 7.2 113 3-132 64-178 (1077)
327 cd01859 MJ1464 MJ1464. This f 98.7 6.3E-08 1.4E-12 63.6 7.0 56 7-66 100-155 (156)
328 KOG0447 Dynamin-like GTP bindi 98.7 1.1E-07 2.4E-12 72.7 8.5 121 4-132 304-494 (980)
329 TIGR03348 VI_IcmF type VI secr 98.7 1.2E-07 2.5E-12 79.8 9.5 111 11-130 114-256 (1169)
330 COG1161 Predicted GTPases [Gen 98.7 6.9E-08 1.5E-12 70.6 6.5 61 6-70 130-190 (322)
331 COG0050 TufB GTPases - transla 98.7 2.5E-08 5.5E-13 70.6 3.8 121 5-133 9-144 (394)
332 PF03193 DUF258: Protein of un 98.6 2.6E-08 5.5E-13 65.4 3.5 60 9-71 36-101 (161)
333 PRK09435 membrane ATPase/prote 98.6 1.8E-07 3.8E-12 68.5 8.1 62 56-132 148-209 (332)
334 cd01849 YlqF_related_GTPase Yl 98.6 1.3E-07 2.9E-12 62.0 6.4 57 6-66 98-154 (155)
335 TIGR00750 lao LAO/AO transport 98.6 2.2E-07 4.8E-12 67.4 8.1 62 56-132 126-187 (300)
336 COG0012 Predicted GTPase, prob 98.6 3E-07 6.6E-12 67.3 8.3 85 8-92 2-109 (372)
337 KOG1491 Predicted GTP-binding 98.6 2.8E-07 6.1E-12 66.5 7.9 88 5-92 17-126 (391)
338 KOG0465 Mitochondrial elongati 98.6 5.7E-08 1.2E-12 74.6 4.6 119 7-133 38-172 (721)
339 KOG0099 G protein subunit Galp 98.6 1.3E-07 2.8E-12 66.2 5.9 77 56-132 201-284 (379)
340 PRK12288 GTPase RsgA; Reviewed 98.6 1.6E-07 3.5E-12 69.2 6.7 58 11-71 208-271 (347)
341 KOG0448 Mitofusin 1 GTPase, in 98.6 6.9E-07 1.5E-11 69.6 10.1 120 5-132 106-276 (749)
342 KOG2486 Predicted GTPase [Gene 98.6 9.8E-08 2.1E-12 67.1 4.8 115 5-132 133-263 (320)
343 COG5257 GCD11 Translation init 98.6 5.1E-08 1.1E-12 69.9 3.4 133 6-144 8-167 (415)
344 cd01851 GBP Guanylate-binding 98.6 2.2E-06 4.7E-11 59.7 11.1 89 5-93 4-104 (224)
345 COG3276 SelB Selenocysteine-sp 98.5 7E-07 1.5E-11 66.5 8.9 114 10-132 2-118 (447)
346 cd03112 CobW_like The function 98.5 1E-06 2.2E-11 58.1 8.0 21 11-31 3-23 (158)
347 KOG0469 Elongation factor 2 [T 98.5 2.7E-07 5.8E-12 69.9 5.6 120 3-130 14-163 (842)
348 TIGR00157 ribosome small subun 98.5 4.4E-07 9.5E-12 64.0 5.9 58 10-71 122-185 (245)
349 PRK12289 GTPase RsgA; Reviewed 98.5 4.2E-07 9.2E-12 67.1 5.7 56 11-69 175-236 (352)
350 TIGR00073 hypB hydrogenase acc 98.4 3E-07 6.6E-12 63.2 4.4 26 6-31 20-45 (207)
351 KOG0705 GTPase-activating prot 98.4 2.1E-07 4.6E-12 70.9 3.7 117 6-132 28-144 (749)
352 TIGR03597 GTPase_YqeH ribosome 98.4 8.2E-07 1.8E-11 66.0 6.6 57 9-68 155-215 (360)
353 TIGR00157 ribosome small subun 98.4 8.4E-07 1.8E-11 62.6 6.2 58 68-132 24-82 (245)
354 COG5258 GTPBP1 GTPase [General 98.4 7.4E-07 1.6E-11 65.5 5.8 122 4-133 113-271 (527)
355 PRK13796 GTPase YqeH; Provisio 98.4 5.8E-07 1.3E-11 66.9 5.4 56 9-67 161-220 (365)
356 COG1618 Predicted nucleotide k 98.4 8.4E-06 1.8E-10 53.2 9.3 113 7-129 4-142 (179)
357 COG1162 Predicted GTPases [Gen 98.3 1.3E-06 2.7E-11 62.6 5.5 59 10-71 166-230 (301)
358 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2E-06 4.3E-11 62.1 6.0 60 9-71 162-227 (287)
359 PRK00098 GTPase RsgA; Reviewed 98.3 2.2E-06 4.7E-11 62.2 6.0 59 9-70 165-229 (298)
360 KOG0460 Mitochondrial translat 98.3 1.3E-06 2.9E-11 63.2 4.3 121 5-132 51-185 (449)
361 KOG1487 GTP-binding protein DR 98.3 6.3E-06 1.4E-10 57.8 7.5 89 9-99 60-155 (358)
362 TIGR01425 SRP54_euk signal rec 98.3 5.6E-06 1.2E-10 62.5 7.8 115 8-132 100-254 (429)
363 PF06858 NOG1: Nucleolar GTP-b 98.2 7.1E-06 1.5E-10 44.1 5.7 45 79-128 12-58 (58)
364 KOG3859 Septins (P-loop GTPase 98.2 5.2E-06 1.1E-10 58.8 6.5 116 8-132 42-191 (406)
365 KOG0085 G protein subunit Galp 98.2 3.1E-07 6.8E-12 63.2 -0.3 76 55-133 197-282 (359)
366 PF00503 G-alpha: G-protein al 98.2 5.1E-06 1.1E-10 62.4 5.9 77 57-133 236-319 (389)
367 PF05621 TniB: Bacterial TniB 98.2 7.2E-06 1.6E-10 58.9 6.3 106 4-126 57-189 (302)
368 COG3523 IcmF Type VI protein s 98.1 6.1E-06 1.3E-10 68.8 6.6 111 11-131 128-270 (1188)
369 COG1703 ArgK Putative periplas 98.1 6.8E-06 1.5E-10 58.7 5.7 110 8-132 51-204 (323)
370 PF03308 ArgK: ArgK protein; 98.1 7.3E-07 1.6E-11 62.5 0.7 23 7-29 28-50 (266)
371 cd03114 ArgK-like The function 98.1 3.6E-05 7.8E-10 50.2 8.5 58 56-128 91-148 (148)
372 PF03266 NTPase_1: NTPase; In 98.1 6.9E-06 1.5E-10 54.6 4.8 108 10-127 1-135 (168)
373 cd03115 SRP The signal recogni 98.1 5.7E-05 1.2E-09 50.3 8.8 67 56-132 82-154 (173)
374 KOG1424 Predicted GTP-binding 98.0 8.5E-06 1.8E-10 61.9 4.8 55 8-66 314-368 (562)
375 PRK14722 flhF flagellar biosyn 98.0 1.7E-05 3.7E-10 59.0 6.4 23 9-31 138-160 (374)
376 TIGR00064 ftsY signal recognit 98.0 1.7E-05 3.7E-10 56.8 6.3 67 56-132 154-232 (272)
377 KOG4273 Uncharacterized conser 98.0 3.8E-05 8.3E-10 53.8 7.5 116 9-132 5-124 (418)
378 cd02042 ParA ParA and ParB of 98.0 4.3E-05 9.3E-10 46.5 6.8 82 11-104 2-84 (104)
379 KOG1143 Predicted translation 98.0 1.7E-05 3.7E-10 58.5 5.3 117 8-132 167-318 (591)
380 PRK10416 signal recognition pa 97.9 5.3E-06 1.2E-10 60.6 2.2 23 8-30 114-136 (318)
381 KOG2484 GTPase [General functi 97.9 1.2E-05 2.5E-10 59.4 3.5 57 6-66 250-306 (435)
382 cd02038 FleN-like FleN is a me 97.9 8.4E-05 1.8E-09 47.9 7.1 107 12-130 4-110 (139)
383 PRK13695 putative NTPase; Prov 97.8 0.00016 3.5E-09 48.3 7.7 23 9-31 1-23 (174)
384 PRK12727 flagellar biosynthesi 97.8 0.00012 2.6E-09 56.7 7.6 22 9-30 351-372 (559)
385 PRK11537 putative GTP-binding 97.8 0.00017 3.6E-09 52.9 8.0 22 10-31 6-27 (318)
386 cd01855 YqeH YqeH. YqeH is an 97.8 2.9E-05 6.3E-10 52.6 3.5 55 68-132 22-76 (190)
387 cd01854 YjeQ_engC YjeQ/EngC. 97.8 6.7E-05 1.5E-09 54.2 5.5 51 75-132 73-124 (287)
388 KOG1534 Putative transcription 97.7 2.9E-05 6.3E-10 53.0 3.1 22 8-29 3-24 (273)
389 PF13207 AAA_17: AAA domain; P 97.7 2.8E-05 6.1E-10 48.6 2.9 22 10-31 1-22 (121)
390 PRK08118 topology modulation p 97.7 2.9E-05 6.2E-10 51.7 3.0 23 9-31 2-24 (167)
391 cd03111 CpaE_like This protein 97.7 0.00034 7.4E-09 42.9 7.5 100 15-126 7-106 (106)
392 PRK14974 cell division protein 97.7 3.2E-05 6.8E-10 56.9 3.4 66 57-132 223-294 (336)
393 cd00009 AAA The AAA+ (ATPases 97.7 0.00031 6.7E-09 44.7 7.7 25 8-32 19-43 (151)
394 KOG2485 Conserved ATP/GTP bind 97.7 6.3E-05 1.4E-09 54.1 4.6 61 6-67 141-206 (335)
395 COG0563 Adk Adenylate kinase a 97.7 2.9E-05 6.2E-10 52.2 2.8 23 9-31 1-23 (178)
396 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00041 8.9E-09 41.1 7.6 70 11-94 2-72 (99)
397 COG1126 GlnQ ABC-type polar am 97.7 4.5E-05 9.8E-10 52.3 3.6 25 10-34 30-54 (240)
398 cd01859 MJ1464 MJ1464. This f 97.7 3.3E-05 7.1E-10 50.6 2.6 54 71-132 3-56 (156)
399 PRK07261 topology modulation p 97.7 4.2E-05 9.1E-10 51.0 3.1 22 10-31 2-23 (171)
400 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 6E-05 1.3E-09 48.6 3.6 50 75-132 6-57 (141)
401 PF05729 NACHT: NACHT domain 97.6 0.00013 2.8E-09 47.8 5.2 22 10-31 2-23 (166)
402 PF13671 AAA_33: AAA domain; P 97.6 4.2E-05 9.1E-10 49.2 2.7 21 11-31 2-22 (143)
403 COG1116 TauB ABC-type nitrate/ 97.6 4.8E-05 1E-09 53.1 2.9 23 11-33 32-54 (248)
404 COG1419 FlhF Flagellar GTP-bin 97.6 0.00056 1.2E-08 51.2 8.5 25 8-32 203-227 (407)
405 KOG0459 Polypeptide release fa 97.6 2.7E-05 5.9E-10 57.8 1.6 130 5-141 76-241 (501)
406 PRK14738 gmk guanylate kinase; 97.6 8.3E-05 1.8E-09 51.1 3.5 27 5-31 10-36 (206)
407 PRK10867 signal recognition pa 97.6 0.00064 1.4E-08 51.8 8.5 65 57-131 184-254 (433)
408 COG1136 SalX ABC-type antimicr 97.6 6.6E-05 1.4E-09 52.1 3.0 22 11-32 34-55 (226)
409 PRK00771 signal recognition pa 97.6 0.0005 1.1E-08 52.5 7.9 65 57-131 176-246 (437)
410 TIGR00959 ffh signal recogniti 97.6 0.00026 5.6E-09 53.8 6.3 65 57-131 183-253 (428)
411 COG0523 Putative GTPases (G3E 97.6 0.0017 3.6E-08 47.7 10.2 23 11-33 4-26 (323)
412 PRK12289 GTPase RsgA; Reviewed 97.5 0.00021 4.5E-09 53.0 5.5 50 76-132 85-135 (352)
413 PRK12724 flagellar biosynthesi 97.5 0.00037 8.1E-09 52.7 6.8 22 9-30 224-245 (432)
414 PF13521 AAA_28: AAA domain; P 97.5 5.2E-05 1.1E-09 50.1 2.0 22 10-31 1-22 (163)
415 KOG2423 Nucleolar GTPase [Gene 97.5 3.4E-05 7.3E-10 57.3 1.1 83 5-94 304-388 (572)
416 PF13555 AAA_29: P-loop contai 97.5 0.00011 2.4E-09 40.4 2.9 22 10-31 25-46 (62)
417 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00038 8.2E-09 44.4 5.8 23 9-31 23-45 (133)
418 PRK05703 flhF flagellar biosyn 97.5 0.00043 9.4E-09 52.7 7.0 22 9-30 222-243 (424)
419 PRK06217 hypothetical protein; 97.5 9.8E-05 2.1E-09 49.8 3.2 23 9-31 2-24 (183)
420 COG3839 MalK ABC-type sugar tr 97.5 9E-05 1.9E-09 54.4 2.9 22 11-32 32-53 (338)
421 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00019 4.1E-09 47.1 4.2 51 76-132 4-54 (157)
422 PRK00098 GTPase RsgA; Reviewed 97.5 0.00028 6E-09 51.3 5.3 49 77-132 77-126 (298)
423 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.8E-09 41.1 2.8 21 11-31 2-22 (69)
424 COG1117 PstB ABC-type phosphat 97.5 9.1E-05 2E-09 50.8 2.5 20 12-31 37-56 (253)
425 KOG3347 Predicted nucleotide k 97.5 0.0001 2.2E-09 47.7 2.5 26 5-30 4-29 (176)
426 PF00005 ABC_tran: ABC transpo 97.4 0.00012 2.7E-09 46.7 2.9 23 10-32 13-35 (137)
427 PRK14737 gmk guanylate kinase; 97.4 0.00012 2.7E-09 49.5 2.9 24 9-32 5-28 (186)
428 cd01120 RecA-like_NTPases RecA 97.4 0.00072 1.6E-08 44.0 6.3 22 11-32 2-23 (165)
429 TIGR03597 GTPase_YqeH ribosome 97.4 0.00014 3E-09 54.2 3.2 56 67-132 50-105 (360)
430 PRK04195 replication factor C 97.4 0.00057 1.2E-08 52.9 6.5 25 8-32 39-63 (482)
431 PRK10078 ribose 1,5-bisphospho 97.4 0.00017 3.7E-09 48.7 3.2 23 10-32 4-26 (186)
432 COG0194 Gmk Guanylate kinase [ 97.4 0.0001 2.2E-09 49.4 2.0 24 9-32 5-28 (191)
433 PF00004 AAA: ATPase family as 97.4 0.00015 3.2E-09 45.7 2.8 22 11-32 1-22 (132)
434 PRK14723 flhF flagellar biosyn 97.4 0.00063 1.4E-08 55.0 6.8 23 9-31 186-208 (767)
435 smart00382 AAA ATPases associa 97.4 0.00018 3.9E-09 45.4 3.2 25 9-33 3-27 (148)
436 PRK01889 GTPase RsgA; Reviewed 97.4 0.00022 4.7E-09 53.1 3.9 25 9-33 196-220 (356)
437 KOG1533 Predicted GTPase [Gene 97.4 4E-05 8.8E-10 53.1 0.1 20 9-28 3-22 (290)
438 KOG0463 GTP-binding protein GP 97.4 8.7E-05 1.9E-09 54.9 1.7 68 58-133 220-289 (641)
439 PRK12726 flagellar biosynthesi 97.4 0.001 2.2E-08 49.8 7.1 23 8-30 206-228 (407)
440 cd00071 GMPK Guanosine monopho 97.4 0.00019 4E-09 46.2 2.9 21 11-31 2-22 (137)
441 PRK03839 putative kinase; Prov 97.4 0.00015 3.3E-09 48.7 2.6 22 10-31 2-23 (180)
442 TIGR01618 phage_P_loop phage n 97.4 0.00036 7.9E-09 48.4 4.5 25 6-30 10-34 (220)
443 PF13238 AAA_18: AAA domain; P 97.4 0.00016 3.5E-09 45.4 2.6 21 11-31 1-21 (129)
444 TIGR02322 phosphon_PhnN phosph 97.3 0.00018 3.8E-09 48.2 2.8 22 10-31 3-24 (179)
445 PRK05480 uridine/cytidine kina 97.3 0.00027 6E-09 48.6 3.8 25 7-31 5-29 (209)
446 TIGR00235 udk uridine kinase. 97.3 0.00024 5.1E-09 48.9 3.5 26 6-31 4-29 (207)
447 COG3842 PotA ABC-type spermidi 97.3 0.00018 3.8E-09 53.2 2.9 23 11-33 34-56 (352)
448 PF09547 Spore_IV_A: Stage IV 97.3 0.0031 6.6E-08 47.7 9.3 22 9-30 18-39 (492)
449 PRK07429 phosphoribulokinase; 97.3 0.00028 6.1E-09 51.9 3.9 31 1-31 1-31 (327)
450 TIGR02475 CobW cobalamin biosy 97.3 0.0032 6.9E-08 46.7 9.4 21 11-31 7-27 (341)
451 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00022 4.7E-09 43.8 2.7 21 9-29 16-36 (107)
452 PRK14530 adenylate kinase; Pro 97.3 0.00022 4.8E-09 49.3 3.1 22 9-30 4-25 (215)
453 PF03205 MobB: Molybdopterin g 97.3 0.00021 4.6E-09 46.1 2.8 22 10-31 2-23 (140)
454 COG0378 HypB Ni2+-binding GTPa 97.3 0.00022 4.8E-09 48.1 2.8 23 8-30 13-35 (202)
455 TIGR03263 guanyl_kin guanylate 97.3 0.00023 5.1E-09 47.6 3.0 23 10-32 3-25 (180)
456 TIGR00101 ureG urease accessor 97.3 0.00026 5.6E-09 48.4 3.2 23 9-31 2-24 (199)
457 COG4525 TauB ABC-type taurine 97.3 0.00023 4.9E-09 48.4 2.8 23 10-32 33-55 (259)
458 cd02023 UMPK Uridine monophosp 97.3 0.00022 4.7E-09 48.6 2.8 21 11-31 2-22 (198)
459 COG1120 FepC ABC-type cobalami 97.3 0.00023 4.9E-09 50.4 2.9 21 11-31 31-51 (258)
460 PRK10751 molybdopterin-guanine 97.3 0.00033 7.1E-09 46.8 3.3 24 8-31 6-29 (173)
461 PRK12288 GTPase RsgA; Reviewed 97.3 0.001 2.2E-08 49.4 6.2 48 78-132 118-165 (347)
462 cd03238 ABC_UvrA The excision 97.3 0.0003 6.5E-09 47.2 3.2 22 9-30 22-43 (176)
463 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00026 5.7E-09 47.6 2.9 21 9-29 4-24 (188)
464 PRK10646 ADP-binding protein; 97.2 0.0021 4.5E-08 42.0 6.9 22 10-31 30-51 (153)
465 PRK14532 adenylate kinase; Pro 97.2 0.00028 6.1E-09 47.6 3.0 22 10-31 2-23 (188)
466 PRK08233 hypothetical protein; 97.2 0.00032 6.9E-09 46.9 3.2 23 9-31 4-26 (182)
467 COG3638 ABC-type phosphate/pho 97.2 0.00027 5.9E-09 49.1 2.9 21 11-31 33-53 (258)
468 PF04665 Pox_A32: Poxvirus A32 97.2 0.00029 6.4E-09 49.4 3.0 25 7-31 12-36 (241)
469 PRK02496 adk adenylate kinase; 97.2 0.00034 7.4E-09 47.1 3.3 22 9-30 2-23 (184)
470 KOG0466 Translation initiation 97.2 3.2E-05 7E-10 55.6 -1.8 126 5-140 35-202 (466)
471 PTZ00088 adenylate kinase 1; P 97.2 0.00032 7E-09 49.0 3.1 25 7-31 5-29 (229)
472 COG3840 ThiQ ABC-type thiamine 97.2 0.00034 7.3E-09 47.0 2.9 24 9-32 26-49 (231)
473 KOG0780 Signal recognition par 97.2 0.00036 7.8E-09 51.8 3.3 46 54-99 181-232 (483)
474 PRK13949 shikimate kinase; Pro 97.2 0.00035 7.6E-09 46.5 3.0 22 9-30 2-23 (169)
475 PRK06547 hypothetical protein; 97.2 0.00045 9.7E-09 46.2 3.4 26 6-31 13-38 (172)
476 cd01130 VirB11-like_ATPase Typ 97.2 0.00038 8.2E-09 47.1 3.1 25 8-32 25-49 (186)
477 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.00038 8.2E-09 48.1 3.2 23 10-32 32-54 (218)
478 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00051 1.1E-08 46.1 3.6 23 10-32 27-49 (177)
479 PF07728 AAA_5: AAA domain (dy 97.2 0.00037 8E-09 44.7 2.9 22 10-31 1-22 (139)
480 PRK14531 adenylate kinase; Pro 97.2 0.0004 8.7E-09 46.8 3.1 23 9-31 3-25 (183)
481 PRK00300 gmk guanylate kinase; 97.2 0.00035 7.6E-09 47.8 2.9 23 9-31 6-28 (205)
482 cd01131 PilT Pilus retraction 97.2 0.00035 7.5E-09 47.8 2.8 22 11-32 4-25 (198)
483 cd02025 PanK Pantothenate kina 97.2 0.00033 7.2E-09 48.7 2.7 21 11-31 2-22 (220)
484 cd03225 ABC_cobalt_CbiO_domain 97.1 0.00044 9.5E-09 47.6 3.2 23 10-32 29-51 (211)
485 cd01428 ADK Adenylate kinase ( 97.1 0.00034 7.5E-09 47.3 2.6 22 10-31 1-22 (194)
486 TIGR00960 3a0501s02 Type II (G 97.1 0.00044 9.4E-09 47.8 3.2 23 10-32 31-53 (216)
487 TIGR01166 cbiO cobalt transpor 97.1 0.0004 8.7E-09 47.0 2.9 23 10-32 20-42 (190)
488 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00061 1.3E-08 46.7 3.8 23 10-32 28-50 (205)
489 PLN02200 adenylate kinase fami 97.1 0.00059 1.3E-08 47.9 3.7 24 7-30 42-65 (234)
490 cd03292 ABC_FtsE_transporter F 97.1 0.00047 1E-08 47.5 3.2 23 10-32 29-51 (214)
491 cd03264 ABC_drug_resistance_li 97.1 0.00042 9.2E-09 47.6 2.9 23 10-32 27-49 (211)
492 cd03261 ABC_Org_Solvent_Resist 97.1 0.00047 1E-08 48.3 3.2 23 10-32 28-50 (235)
493 cd03216 ABC_Carb_Monos_I This 97.1 0.00074 1.6E-08 44.6 3.9 23 10-32 28-50 (163)
494 TIGR03608 L_ocin_972_ABC putat 97.1 0.0005 1.1E-08 47.1 3.2 23 10-32 26-48 (206)
495 PF02367 UPF0079: Uncharacteri 97.1 0.00077 1.7E-08 42.4 3.8 23 9-31 16-38 (123)
496 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00045 9.8E-09 46.4 2.9 21 11-31 2-22 (183)
497 cd03224 ABC_TM1139_LivF_branch 97.1 0.00049 1.1E-08 47.7 3.1 23 10-32 28-50 (222)
498 cd03269 ABC_putative_ATPase Th 97.1 0.00051 1.1E-08 47.2 3.2 23 10-32 28-50 (210)
499 TIGR01351 adk adenylate kinase 97.1 0.0004 8.6E-09 47.9 2.6 21 10-30 1-21 (210)
500 TIGR02673 FtsE cell division A 97.1 0.00051 1.1E-08 47.3 3.2 23 10-32 30-52 (214)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-34 Score=188.00 Aligned_cols=146 Identities=39% Similarity=0.696 Sum_probs=132.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|....++.+||+++|++|+|||.|+.||....+.+.+..|.|.+.....+.++++..+++||||.||+.|+.+...++++
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS 154 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (156)
+|++|+|||+++.+||..+..|+.++.++... +.|.++||||+|+.++ +.++.++.+. +....+.+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~--fa~~~~~~ 147 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQE--FADELGIP 147 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHH--HHHhcCCc
Confidence 99999999999999999999999999887765 7899999999999998 8787776633 44444444
No 2
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.9e-33 Score=180.54 Aligned_cols=150 Identities=80% Similarity=1.245 Sum_probs=138.0
Q ss_pred CCc-ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee
Q 031598 1 MPS-RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (156)
Q Consensus 1 ~~~-~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (156)
|++ .+...+||+++|++|+|||||++++.+.++...+..+.+.+...+.+.+++..+.++||||.|++.|.++...+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 554 5577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcc
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRK 152 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~ 152 (156)
++|-.+++||++++.+|+.+..|+++++.+.....+..-|++++|||+|+.+.+.|+++.+..+. ||..++
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~--WC~s~g 151 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQT--WCKSKG 151 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHH--HHHhcC
Confidence 99999999999999999999999999999999888889999999999999987667777765554 887654
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-31 Score=174.52 Aligned_cols=135 Identities=41% Similarity=0.716 Sum_probs=124.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
.-+..|++++|+.++||||||.+|..+.+..++.++.|.+.....+.+.+..+++++|||.||+.|+.+.+.|++.+.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS 144 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~ 144 (156)
++|||+++..+|+....|++.++..... ++.-+++||||.||.++ ++++.+|...
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs---~~viI~LVGnKtDL~dk--rqvs~eEg~~ 153 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGS---DDVIIFLVGNKTDLSDK--RQVSIEEGER 153 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCC---CceEEEEEcccccccch--hhhhHHHHHH
Confidence 9999999999999999999999865443 35778899999999999 8888887663
No 4
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-31 Score=172.16 Aligned_cols=134 Identities=44% Similarity=0.758 Sum_probs=123.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+...+|++++|+.++|||||+.||...++.+...++.+.-+.+..+...+..+.|.||||.|++.|..+.+.|+++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 45679999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS 144 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~ 144 (156)
|+|||+.+.+||..++.|.+++.+... +++-+.+||||+||.+. |++..+|.+.
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~----~~~vialvGNK~DL~~~--R~V~~~ea~~ 135 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS----PNIVIALVGNKADLLER--REVEFEEAQA 135 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC----CCeEEEEecchhhhhhc--ccccHHHHHH
Confidence 999999999999999999999987665 37778899999999997 7888777665
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.5e-31 Score=170.47 Aligned_cols=143 Identities=36% Similarity=0.640 Sum_probs=130.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....+|++++|+.|+|||+|+.+|....+.+....|.+.++....+++++..++++||||.|++.+......+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL 155 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (156)
++|||+.++++|..+..|+..++.+... |.-++++|||+||... |.++.||.+. +++++++.+
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGea--FA~ehgLif 145 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEA--FAREHGLIF 145 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHH--HHHHcCcee
Confidence 9999999999999999999999877643 8889999999999998 7777776555 788777654
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=2.9e-30 Score=174.63 Aligned_cols=130 Identities=32% Similarity=0.578 Sum_probs=114.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....+||+++|..|+|||||+.+|.+..+...+.++.+.++....+.+++..+.+++|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999999888777777777777777778888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
++|||++++.+|+.+..|++.+..... +.|++|||||+|+.+. +++..++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-----~~piilVGNK~DL~~~--~~v~~~~ 132 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAP-----GVPKILVGNRLHLAFK--RQVATEQ 132 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccchhc--cCCCHHH
Confidence 999999999999999999999976542 7899999999999875 5555443
No 7
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-30 Score=171.29 Aligned_cols=144 Identities=37% Similarity=0.667 Sum_probs=131.1
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..+..+||+++|+++||||+++.+|..+.+...+..+.+.++....+..++....+++|||.||+.+..+...|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL 155 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (156)
+++|||+.+..+|+.+..|+..+..+... .+|.++||||+|+.++ |+++.+..+. .+...+.+|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~--lA~e~G~~F 151 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEA--LAREYGIKF 151 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHH--HHHHhCCeE
Confidence 99999999999999999999999776654 8899999999999997 8888876555 555555544
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=7.5e-30 Score=174.13 Aligned_cols=126 Identities=41% Similarity=0.748 Sum_probs=111.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+.|+++|..|+|||||+++|....+...+.++.+.++....+.+++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47899999999999999999999998888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|++++++|+.+..|+..+..... .+.|+++||||+|+.++ +++..+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~----~~~piilVgNK~DL~~~--~~v~~~ 126 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REISRQ 126 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHH
Confidence 99999999999999987765432 37899999999999765 545444
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-30 Score=169.19 Aligned_cols=144 Identities=34% Similarity=0.633 Sum_probs=129.4
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
..-...+||+++|++++|||-|+.||..+.+..+...+.+....+..+.++++.+..+||||.||+.|+.+..++++++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS 154 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (156)
++++|||++++.+|+.+..|+.+++.+... ++++++||||+||.+- |.++.++.+. .....+++
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~--~Ae~~~l~ 152 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKA--FAEKEGLF 152 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHh--HHHhcCce
Confidence 999999999999999999999999876643 8999999999999986 8888877665 33334443
No 10
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=3.3e-29 Score=166.43 Aligned_cols=127 Identities=37% Similarity=0.711 Sum_probs=110.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988877777877777677777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
||++++.+|+.+..|+..+..... ++.|+++|+||+|+.++ +.+..+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~ 128 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYE 128 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHH
Confidence 999999999999999988765432 26899999999999876 444433
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.5e-29 Score=170.64 Aligned_cols=124 Identities=39% Similarity=0.769 Sum_probs=109.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++.++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888887777777777 7778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++++|+.+..|+..+..........++|+++|+||+|+.+.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR 125 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc
Confidence 999999999999999998876554333457899999999999854
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=4.4e-29 Score=168.03 Aligned_cols=121 Identities=22% Similarity=0.531 Sum_probs=107.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
++..+||+++|++++|||||+++|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 35578999999999999999999999998888888887554 45667888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++.+|+.+ ..|...+..... +.|+++||||+||.+
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~ 123 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhc
Confidence 999999999999997 789998876542 689999999999975
No 13
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.3e-30 Score=161.18 Aligned_cols=147 Identities=38% Similarity=0.672 Sum_probs=132.8
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|++.-+..+|++++|+.|+|||.|+++|...++.+....+.+.+..+..+.+.++.++++||||.|++.|+.....+++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL 155 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (156)
+.+.++|||+.++++|+++..|+...+-.... ++.++++|||.||..+ +++..+|... +|.+.++.+
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~--FaqEnel~f 148 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASR--FAQENELMF 148 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHh--hhcccceee
Confidence 99999999999999999999999998765543 8889999999999998 8888887655 666666544
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=8.9e-29 Score=166.11 Aligned_cols=117 Identities=22% Similarity=0.550 Sum_probs=104.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6899999999999999999999998888888886654 456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|++++++|+.+ ..|+..+..... +.|+++||||+||.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~ 119 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRT 119 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhc
Confidence 99999999996 789998876642 689999999999965
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=1.8e-28 Score=164.17 Aligned_cols=118 Identities=36% Similarity=0.668 Sum_probs=105.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+++|||||+.+|....+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.++++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888888887655 455677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+|+.+ ..|+..+..... +.|+++||||+|+.++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgnK~Dl~~~ 120 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAP-----NVPIVLVGTKLDLRDD 120 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeChhhccC
Confidence 99999999998 689998875532 7899999999999764
No 16
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.5e-28 Score=163.50 Aligned_cols=122 Identities=40% Similarity=0.788 Sum_probs=109.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999888888888877777777788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.+|..+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK 123 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence 9999999999999999999876532 37899999999999865
No 17
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=1.4e-28 Score=164.40 Aligned_cols=128 Identities=26% Similarity=0.520 Sum_probs=108.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999988877777776444 34466788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
||++++.+|..+..|+..+.+.... .++|+++|+||+|+.++ ++++.++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilvgNK~Dl~~~--~~v~~~~ 129 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLT---EDIPLVLVGNKVDLESQ--RQVTTEE 129 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCC---CCCCEEEEEEChhhhhc--CccCHHH
Confidence 9999999999999888777654322 37899999999999865 5555443
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=2.6e-28 Score=161.97 Aligned_cols=120 Identities=38% Similarity=0.752 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999987777788777666666666777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE 121 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc
Confidence 99999999999999998865442 26799999999999765
No 19
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=3.3e-28 Score=162.34 Aligned_cols=120 Identities=38% Similarity=0.760 Sum_probs=107.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+++|||||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998888877778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.++..+..|+..+...... ...|+++|+||+|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSP 121 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCcc
Confidence 99999999999999988655332 25689999999999765
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=6.4e-29 Score=158.23 Aligned_cols=134 Identities=40% Similarity=0.686 Sum_probs=121.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....+||+++|.+|+|||||+.+|....+.+....+.+.+.....+.+++.++++.||||.|++.|+...+.+++++.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 45679999999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG 143 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~ 143 (156)
++|||+..+++|..+..|+.++..+.... ++-.++|+||+|...+ |.+..+|..
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~ 141 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGL 141 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHH
Confidence 99999999999999999999998887654 5556799999998876 777776543
No 21
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=3.2e-28 Score=165.90 Aligned_cols=124 Identities=29% Similarity=0.531 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
+||+++|++++|||||++++.+..+...+.++.+.+.....+.++ +..+.+.+|||+|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 489999999999999999999999888888888877766666653 466899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCC---------------CCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASP---------------SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.+|+.+..|+..+...... ....+.|+++||||+|+.++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 99999999999999999999999764311 12247899999999999865
No 22
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=2.2e-28 Score=162.17 Aligned_cols=124 Identities=32% Similarity=0.649 Sum_probs=110.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888888877777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCC-CCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPS-DPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+++.+..|+..+....... ...+.|+++|+||+|+.++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 125 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH 125 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc
Confidence 9999999999999999998765421 1236899999999999753
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=3.2e-28 Score=168.86 Aligned_cols=119 Identities=21% Similarity=0.500 Sum_probs=106.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++++|||+|+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+..+...+++.+|++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 468999999999999999999999999888888887665 4456778889999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 87 VYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|||++++.+|+.+ ..|+..+..... +.|+++||||+|+.+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~ 131 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRT 131 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccccc
Confidence 9999999999984 789998876542 679999999999975
No 24
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=2.7e-28 Score=163.91 Aligned_cols=123 Identities=43% Similarity=0.743 Sum_probs=106.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------CeEEEEEEEeCCCcccccchhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA 76 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~ 76 (156)
+.+||+++|++|||||||++++.+..+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999888888888777766555543 35688999999999999999999
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.+|++++|||++++++|..+..|+..+...... .+.|+++|+||+|+.++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC---ENPDIVLCGNKADLEDQ 135 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEeCccchhc
Confidence 999999999999999999999999999988765432 26799999999999865
No 25
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=4.4e-29 Score=157.00 Aligned_cols=133 Identities=41% Similarity=0.723 Sum_probs=120.1
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
+..-....+.+|+|++|+|||+|+.+|....+...+..+.|.+.....+.+++..+.++||||.|++.|+.+...++++.
T Consensus 2 ar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt 81 (198)
T KOG0079|consen 2 ARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT 81 (198)
T ss_pred cccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC
Confidence 33344567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
+++++|||+.+.+||..+..|++++.+.+. ..|-++||||.|.++- +.+..++
T Consensus 82 hgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~d 134 (198)
T KOG0079|consen 82 HGVIVVYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTED 134 (198)
T ss_pred ceEEEEEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHH
Confidence 999999999999999999999999987665 7889999999999986 4444443
No 26
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=4.3e-28 Score=160.95 Aligned_cols=121 Identities=40% Similarity=0.805 Sum_probs=108.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999988777778877777777777888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++++|..+..|+..+..... .+.|+++|+||+|+..+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK 122 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc
Confidence 999999999999999998876542 26899999999999765
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=5.5e-28 Score=159.89 Aligned_cols=120 Identities=35% Similarity=0.687 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
++|+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999988888888887777777788888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK 120 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence 99999999999999998876542 27899999999999865
No 28
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=1.6e-27 Score=158.74 Aligned_cols=127 Identities=56% Similarity=1.048 Sum_probs=112.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+...+||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999988877777877777677777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++++++.+..|...+..........+.|+++|+||+|+..
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 99999999999999999999888766544445789999999999973
No 29
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=6.6e-28 Score=159.87 Aligned_cols=122 Identities=39% Similarity=0.767 Sum_probs=109.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|+++||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45899999999999999999999998887778888877777778888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++..+..|+..+...... +.|+++|+||+|+...
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL 123 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence 99999999999999999988766532 6899999999999865
No 30
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=4.9e-28 Score=159.95 Aligned_cols=119 Identities=39% Similarity=0.817 Sum_probs=105.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+||+++|++++|||||++++.+..+...+.++.+.++....+.+. +..+.+++|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988887778888877766666666 667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||+++++++..+..|+..+..... +.|+++|+||+|+..+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ 121 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc
Confidence 9999999999999999988865443 7899999999999865
No 31
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=7.5e-28 Score=160.53 Aligned_cols=123 Identities=40% Similarity=0.753 Sum_probs=107.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-chhhhheecccEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCV 85 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~l 85 (156)
+.+||+++|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||++|++.+. .++..+++.+|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 35899999999999999999999988887778888777777777888888999999999998876 56788899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||.+++.+|..+..|+..+...... .++|+++|+||+|+.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ 124 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh
Confidence 999999999999999999988766433 27899999999999865
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.1e-27 Score=158.99 Aligned_cols=122 Identities=38% Similarity=0.728 Sum_probs=107.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+++||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888877777787777777777788877899999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||.+++.+|+.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence 9999999999999999998875432 37899999999999865
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=8.7e-28 Score=158.83 Aligned_cols=120 Identities=36% Similarity=0.648 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++....+...+.++.+ +.....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999998887776666665 344556677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+|+.+..|...+...... .+.|+++|+||+|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDT---ENVPMVLVGNKCDLEDE 121 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence 999999999999999888765432 37899999999999765
No 34
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.5e-27 Score=161.90 Aligned_cols=119 Identities=28% Similarity=0.618 Sum_probs=104.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++++|||||+.+|....+...+.++.+..+ ...+.+++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999998888888887554 44456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.+|+.+. .|...+.... .+.|+++||||+||.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~ 122 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRND 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcC
Confidence 9999999999996 5877776543 27899999999999764
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=8.4e-28 Score=162.90 Aligned_cols=123 Identities=31% Similarity=0.611 Sum_probs=107.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 4468999999999999999999999888777777776544 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++++|+.+..|+..+.+.... .+.|+++|+||+|+.++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDK---DRVPMILVGNKCDLDSE 125 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence 999999999999999999988765432 37899999999999765
No 36
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=1.2e-27 Score=163.44 Aligned_cols=122 Identities=41% Similarity=0.733 Sum_probs=108.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999999887777888877776677777787789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++++|+.+..|+..+..... ..|+++|+||+|+.+.
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~ 125 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER 125 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc
Confidence 99999999999999999998876543 6899999999999865
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=3.4e-28 Score=160.77 Aligned_cols=128 Identities=45% Similarity=0.805 Sum_probs=116.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998899998888888999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecccc
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEG 143 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~ 143 (156)
.+++++|+.+..|+..+..... .+.|+++||||+|+.++ ++++.++..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~ 128 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQ 128 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHH
T ss_pred cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHH
Confidence 9999999999999999988876 26899999999999975 555555433
No 38
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.3e-27 Score=158.44 Aligned_cols=120 Identities=32% Similarity=0.645 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+|+|||||++++....+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998877766667765443 455667788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+|+.+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc
Confidence 99999999999999998876543 237899999999999875
No 39
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.7e-28 Score=151.22 Aligned_cols=131 Identities=37% Similarity=0.717 Sum_probs=118.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
....|++++|.+.+|||||+.+..+..+......+.|.+...+.+.-...++.+++|||.|++.++.+...+++.+++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 45689999999999999999999999998888899999988887766778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccc
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEE 142 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~ 142 (156)
++||..|.+||.++++|...+..+ ..++.|+|+|+||||+.++ |.++.|..
T Consensus 99 LmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~e--Rvis~e~g 149 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSE--RVISHERG 149 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccc--eeeeHHHH
Confidence 999999999999999999998655 3459999999999999998 77666643
No 40
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=1.2e-27 Score=158.01 Aligned_cols=120 Identities=41% Similarity=0.737 Sum_probs=106.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777788777777777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.++..+..|+..+..... ++.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ 120 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh
Confidence 99999999999999988765543 27899999999999864
No 41
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.8e-27 Score=161.12 Aligned_cols=120 Identities=47% Similarity=0.781 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 48999999999999999999999987777888887777777788888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+|..+..|+..+...... +.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN 120 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc
Confidence 999999999999999988765432 5799999999999865
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3.3e-27 Score=163.28 Aligned_cols=122 Identities=30% Similarity=0.630 Sum_probs=109.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...+||+++|.+|+|||||++++....+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999888888888888777777777777899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||.+++.+|+.+..|+..+..... +.|+++||||+|+...
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~~ 132 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNR 132 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhhhhc
Confidence 99999999999999999999986542 7899999999999743
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=1.6e-27 Score=164.47 Aligned_cols=123 Identities=37% Similarity=0.612 Sum_probs=108.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888889998888777777754 468999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++++|+.+..|+..+....... ..+.|+++|+||+|+.+.
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc
Confidence 99999999999999999988765421 235789999999999754
No 44
>PLN03110 Rab GTPase; Provisional
Probab=99.95 E-value=2.1e-27 Score=164.01 Aligned_cols=123 Identities=39% Similarity=0.751 Sum_probs=110.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999999887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||.+++.+|+.+..|+..+..... .+.|+++|+||+|+...
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL 132 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc
Confidence 99999999999999999998876543 27899999999999765
No 45
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=2.5e-27 Score=157.72 Aligned_cols=122 Identities=39% Similarity=0.755 Sum_probs=108.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|.+++|||||++++.+..+...+.++.+.+.....+..++....+.+||++|++.+..+...+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998877777777777777777788888899999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.+++.+..|+..+..... ++.|+++|+||.|+.++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR 124 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence 9999999999999999998876543 27899999999999854
No 46
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.8e-27 Score=163.71 Aligned_cols=122 Identities=34% Similarity=0.719 Sum_probs=107.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
.+||+++|++|+|||||+++|.+..+...+.++.+.+.....+.+ ++..+.+++|||+|++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777888877777766665 4566899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||.+++.+|+.+..|+..+...... ...|+++|+||+|+.++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ 124 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc
Confidence 99999999999999999998766543 26789999999999875
No 47
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.95 E-value=5.1e-27 Score=157.25 Aligned_cols=118 Identities=31% Similarity=0.604 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+++|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999988888888876553 34567788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+. .|...+.... ++.|+++|+||+|+.++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhC
Confidence 999999999986 5877776543 26899999999999764
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.95 E-value=6.9e-27 Score=154.62 Aligned_cols=118 Identities=36% Similarity=0.730 Sum_probs=103.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+|+|||||++++.+..+.+.+.++.+.+.......+++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887776777666666666677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|.+++.++..+..|+..+..... +.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCch
Confidence 99999999999999988865432 689999999999953
No 49
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=7.1e-27 Score=167.01 Aligned_cols=128 Identities=27% Similarity=0.517 Sum_probs=109.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-------------eEEEEEEEeCCCccccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------RLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~ 71 (156)
....+||+++|+.|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.++||||+|++.+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 34469999999999999999999999988888888988877666666542 45789999999999999
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--------CCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP--------SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++..+++.++++|+|||++++.+|+.+..|+..+...... ....++|++|||||+||..+
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999999876421 01125899999999999765
No 50
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.95 E-value=2.9e-27 Score=156.53 Aligned_cols=120 Identities=31% Similarity=0.626 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+|+|||||++++....+.+.+.++.+ +.....+..++....+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 6899999999999999999999988777666654 344556677787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+|.++..|+..+...... .+.|+++|+||+|+..+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE 121 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc
Confidence 999999999999999988765432 37899999999999754
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=5.1e-27 Score=162.07 Aligned_cols=118 Identities=23% Similarity=0.541 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+...++.+++.+|++++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999998888888887655 356677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+. .|...+.... ++.|+++||||+|+.++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccc
Confidence 999999999984 5666554433 27899999999999753
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=4.8e-27 Score=155.43 Aligned_cols=121 Identities=31% Similarity=0.607 Sum_probs=103.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++++|||||++++.+..+...+.++.+.. ......+++..+.+++|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999888766666666533 344556778888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.+|+.+..|+..+.+.... .+.|+++|+||+|+..+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ 122 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc
Confidence 9999999999999999888765432 27899999999999865
No 53
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=3.7e-27 Score=155.90 Aligned_cols=120 Identities=48% Similarity=0.874 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788887777777788888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+++.+..|+..+..+.. .+.|+++|+||+|+...
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc
Confidence 99999999999889988876653 27899999999999764
No 54
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=6.7e-27 Score=155.84 Aligned_cols=124 Identities=85% Similarity=1.356 Sum_probs=110.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|+++||||||++++.+..+.....++.+.++....+.+++..+.+++||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999887777777777777777778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+++.+..|...+...+......+.|+++|+||+|+..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK 124 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc
Confidence 99999999999899988877766555568999999999999853
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=7.6e-27 Score=157.30 Aligned_cols=118 Identities=28% Similarity=0.566 Sum_probs=105.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988888899888877777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|++++.+|+.+..|+..+..... ...| ++|+||+|+..
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFA 118 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccc
Confidence 99999999999999998876532 1456 68899999964
No 56
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=5.3e-27 Score=155.33 Aligned_cols=120 Identities=33% Similarity=0.653 Sum_probs=102.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++.+..+...+.++.. +........++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 4899999999999999999999887766666654 333455566777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++++.+..|+..+.+..... +.|+++|+||+|+.++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~---~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRD---DVPIVLVGNKCDLESE 120 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence 9999999999999998887664432 6899999999999865
No 57
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=9.6e-27 Score=158.08 Aligned_cols=119 Identities=37% Similarity=0.709 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+||+++|.+++|||||+++|.+..+.. .+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988764 5677777777677788888889999999999999998988999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEccccccc
Confidence 99999999999988998876532 26899999999999654
No 58
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=5.2e-27 Score=159.27 Aligned_cols=120 Identities=45% Similarity=0.769 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+||+++|++++|||||++++.+..+.. .+.++.+.+.....+.+++..+.++||||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 4566666666666677888889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.+++.+..|+..+...... +.|+++|+||+|+..+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE 121 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc
Confidence 9999999999999999988776432 6899999999999754
No 59
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-27 Score=149.69 Aligned_cols=130 Identities=40% Similarity=0.679 Sum_probs=119.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
-+-.+||+++|..|+|||.|+++|...-+++....+.+.+...+.+.++++.++++||||.|++.++++...++++++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
++|||++...+|+.+.+|+.++..+... +.--|+||||.|+.+. ++++..
T Consensus 84 ilvydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~q 133 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQ 133 (213)
T ss_pred EEEEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHH
Confidence 9999999999999999999999988864 4445899999999987 555543
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=1.8e-26 Score=153.34 Aligned_cols=119 Identities=31% Similarity=0.729 Sum_probs=105.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|||||||++++....+...+.++.+.+.....+..++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 48999999999999999999988877777888777766666666778899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+++.+..|+..+..... +.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR 119 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc
Confidence 99999999999999999887654 7899999999999843
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=1.2e-26 Score=153.13 Aligned_cols=120 Identities=43% Similarity=0.775 Sum_probs=106.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+.++...+.++.+.++....+..++..+.+++|||||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988777888888888888888887789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+|..+..|+..+...... +.|+++|+||+|+..+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~nK~D~~~~ 120 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGN----DVIIVLVGNKTDLSDK 120 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEChhcccc
Confidence 999999999999999987654321 6899999999999644
No 62
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=8.4e-27 Score=157.62 Aligned_cols=118 Identities=31% Similarity=0.594 Sum_probs=99.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+||+++|++|+|||||+++|.+..+...+.++.+.++.. .+... +..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999887777777665533 34444 6678999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.+|+.+. .|+..+.... .+.|+++|+||+|+..+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhC
Confidence 9999999999986 4777665432 27899999999999764
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2e-26 Score=154.24 Aligned_cols=118 Identities=30% Similarity=0.587 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+.++....+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 68999999999999999999998888777777753 33445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|..+. .|+..+.... ++.|+++|+||+|+.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDD 120 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccC
Confidence 999999999985 5877776542 27899999999999754
No 64
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=159.24 Aligned_cols=128 Identities=39% Similarity=0.724 Sum_probs=110.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999988877777888877777778888888899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|||++++.+|+.+..|+..+..... .+.|+++|+||+|+.+. +..+.+
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~ 132 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTE 132 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHH
Confidence 9999999999999999888765432 27899999999999875 444443
No 65
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.7e-26 Score=153.97 Aligned_cols=121 Identities=25% Similarity=0.412 Sum_probs=105.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
++.+||+++|.+|+|||||+++|.+..+. ..+.++.+..+....+.+++....+.+||++|++.+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 56899999999999999999999999887 77788887777666677788778899999999999998999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||.+++.+++.+..|+..+.. ..++|+++|+||+|+.+.
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc
Confidence 999999999999988888775521 126899999999999754
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=2.9e-26 Score=152.12 Aligned_cols=128 Identities=28% Similarity=0.464 Sum_probs=105.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++.+..+...+.++.+..+ ......+...+.+.+|||+|++.+..++..+++.++++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 6899999999999999999999988776667665433 444555677789999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|++++.+++.+..|+..+...... ...+.|+++|+||+|+.+. +++..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~ 129 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSN 129 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHH
Confidence 999999999999998877765432 2347899999999999764 444433
No 67
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=7.7e-27 Score=158.30 Aligned_cols=121 Identities=31% Similarity=0.557 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777765443 3445567777889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.+|+.+..|+..+...... ...+.|+++|+||+|+.++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc
Confidence 99999999999999988765431 2237899999999999765
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=3.9e-26 Score=150.52 Aligned_cols=120 Identities=32% Similarity=0.615 Sum_probs=103.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.++++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999888777777765443 455667777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+|..+..|+..+.+.... .+.|+++|+||+|+.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAAR 121 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc
Confidence 999999999999999888766432 27899999999999763
No 69
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=2.3e-26 Score=152.08 Aligned_cols=120 Identities=43% Similarity=0.808 Sum_probs=107.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+.++.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999887767778777777777888888899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.++++++.....|+..+..... .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK 121 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence 99999999999999998876543 37899999999999854
No 70
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=4e-26 Score=150.68 Aligned_cols=121 Identities=41% Similarity=0.779 Sum_probs=106.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998877667778777777676777777889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+++.+..|+..+..+.... +.|+++|+||+|+...
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~---~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNN---DIVKMLVGNKIDKENR 121 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCC---CCcEEEEEECCccccc
Confidence 9999999999988998887765433 7899999999999843
No 71
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=2.8e-26 Score=151.89 Aligned_cols=119 Identities=33% Similarity=0.644 Sum_probs=102.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+||+++|++|||||||++++... .+...+.++.+.++.......+ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5677778888777766666554 56689999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||.++++++..+..|+..+.... .+.|+++|+||+|+.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK 122 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc
Confidence 9999999999999999998887653 26899999999999765
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=5.1e-26 Score=154.18 Aligned_cols=118 Identities=31% Similarity=0.565 Sum_probs=101.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
.||+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 4899999999999999999999988877777776554 344556777789999999999999888889999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+|+.+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~-----~~piilvgNK~Dl~~~ 119 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCP-----GVKLVLVALKCDLREA 119 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccC
Confidence 999999999986 58888765432 7899999999999865
No 73
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.94 E-value=2.8e-26 Score=160.94 Aligned_cols=123 Identities=30% Similarity=0.542 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.++||||+|++.+..+...++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888877777765 445566777888899999999999998888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQAS-----PSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+..|++.+..... .....+.|+++|+||+|+..+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~ 128 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP 128 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc
Confidence 99999999999999988875421 112337899999999999864
No 74
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.94 E-value=5.6e-26 Score=154.86 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=99.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheec
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 80 (156)
+||+++|.+++|||||+++|.+.++...+.++.+.+.....+.+++..+.+++|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988877777776665555666788888999999999654321 12344788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++++|+.+..|++.+..... ....++|+++|+||+|+..+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECcccccc
Confidence 9999999999999999999999988876642 11237899999999999765
No 75
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=6.8e-26 Score=149.40 Aligned_cols=120 Identities=42% Similarity=0.776 Sum_probs=103.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+.....++...+.........+....+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877666666656666666666777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++++.+..|++.+...... +.|+++|+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~ 120 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ 120 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence 999999999999999888766542 6899999999999864
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=8e-26 Score=154.12 Aligned_cols=113 Identities=31% Similarity=0.693 Sum_probs=103.4
Q ss_pred EcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh
Q 031598 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM 93 (156)
Q Consensus 14 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~ 93 (156)
+|.++||||||++++....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888878888988888777788888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.+|..+..|+..+.+... ++|+++||||+|+..
T Consensus 81 ~S~~~i~~w~~~i~~~~~-----~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCEEEEEECccccc
Confidence 999999999999987642 789999999999964
No 77
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=3.4e-27 Score=150.80 Aligned_cols=142 Identities=33% Similarity=0.652 Sum_probs=123.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
...++++++|++-+|||+|+++|...+++.-.+|+.+.+.+...+.. ++..+++++|||.|++.++++...++++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 45789999999999999999999999999999999999988877665 56678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY 153 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~ 153 (156)
++|||.+|++||+.+..|.++-..+.. ++.++-+++||+|+||..+ |++..||.+. ....+++
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEk--lAa~hgM 148 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEK--LAASHGM 148 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHH--HHHhcCc
Confidence 999999999999999999998776654 3335557899999999988 9999988766 4444444
No 78
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=2.1e-25 Score=148.29 Aligned_cols=123 Identities=39% Similarity=0.705 Sum_probs=107.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988877777777777777777788888889999999999999988899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||.+++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~----~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANN----KVITILVGNKIDLAER 127 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc
Confidence 999999999999999998887655432 6899999999999765
No 79
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=1.3e-25 Score=154.60 Aligned_cols=125 Identities=36% Similarity=0.698 Sum_probs=103.4
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..+..+||+++|.+|+|||||+++|.+..+. .+.++.+.+.....+..++..+.+.+|||||++.+..++..+++.+|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3445689999999999999999999988764 456777777767777778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNN-WREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||.+++++|..+.. |...+..... ..+.|+++|+||+|+..+
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE 135 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc
Confidence 999999999999999876 4444433222 226799999999999865
No 80
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=2.6e-26 Score=152.35 Aligned_cols=114 Identities=20% Similarity=0.353 Sum_probs=96.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
.|+++|++|+|||||+++|.+..+...+.++.+... ..++...+.+.+||++|++.+..++..+++.+|++++|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999998877777777766542 2233445889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+++.++.....|+..+.... .++|+++|+||+|+...
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAA 114 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCC
Confidence 999999998888877775332 37899999999999865
No 81
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=1.6e-25 Score=146.67 Aligned_cols=120 Identities=48% Similarity=0.929 Sum_probs=107.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++++|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999988877788888888888888788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.++++++..+..|+..+..... .+.|+++|+||+|+..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ 120 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc
Confidence 99999999999999988876653 27899999999999733
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=2.3e-25 Score=148.24 Aligned_cols=120 Identities=36% Similarity=0.634 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++.+..+...+.++.+.. ....+..++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999888877777776544 3556667788889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++++++.+..|...+.+.... .++|+++|+||+|+...
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDS---DNVPMVLVGNKADLEDD 121 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC---CCCCEEEEEEChhcccc
Confidence 999999999999998888765332 37899999999999765
No 83
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.2e-25 Score=155.12 Aligned_cols=114 Identities=39% Similarity=0.743 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+++|||||+++|.+.++.. ..++.+.++..... ..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998764 45666555433322 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|++++.+|+.+..|+..+..... .+.|+++|+||+|+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~----~~~piIlVgNK~DL~~ 114 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTAN----EDCLFAVVGNKLDLTE 114 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccccc
Confidence 99999999999888887765422 3689999999999976
No 84
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.94 E-value=2.5e-25 Score=148.69 Aligned_cols=116 Identities=30% Similarity=0.625 Sum_probs=99.5
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~ 90 (156)
|+++|++|+|||||++++.+..+...+.++.... ....+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999998877777776544 344566788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 91 NSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++++|+.+. .|+..+..... +.|+++|+||+|+..+
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~ 117 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLRED 117 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhC
Confidence 9999999985 58887765432 7899999999999764
No 85
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=3.5e-25 Score=148.02 Aligned_cols=118 Identities=31% Similarity=0.551 Sum_probs=100.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+.++.+..+...+.++. .+.....+..++....+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877777665 3444556677787889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.+|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTD 119 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccC
Confidence 999999999984 6877776432 26899999999999753
No 86
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=7.6e-26 Score=150.06 Aligned_cols=120 Identities=29% Similarity=0.490 Sum_probs=96.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheecccEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~l~v~ 88 (156)
||+++|++|+|||||++++.+..+...+.++....+ .....+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877665556554333 44556778788999999999885 3455677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+|+.+..|+..+..... ...++|+++|+||+|+..+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY 121 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh
Confidence 99999999999999888776532 1227899999999999755
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=3.2e-25 Score=153.55 Aligned_cols=125 Identities=27% Similarity=0.427 Sum_probs=99.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee-cccEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL 86 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~l~ 86 (156)
+||+++|++|+|||||+++|.+..+. ..+.++.+.+.....+.+++....+.+|||+|++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999877765 5555555445666677778888899999999988 233345566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|||++++.+|+.+..|+..+..... ..+.|+++|+||+|+... +++..+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~ 127 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQ 127 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHH
Confidence 9999999999999999888876532 237899999999999765 444443
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.93 E-value=4.2e-25 Score=145.69 Aligned_cols=122 Identities=22% Similarity=0.377 Sum_probs=96.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+.++....+...+.++. ..+ ...+.+++..+.+.+|||+|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 489999999999999999999887766554443 223 45677788888999999999864 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|++++.+|+.+..|+..+...... .+.|+++||||+|+...+.+++..+
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~~~~~v~~~ 122 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNI---SEIPLILVGTQDAISESNPRVIDDA 122 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeeHHHhhhcCCcccCHH
Confidence 999999999999999988765432 3789999999999965433544443
No 89
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=3.6e-25 Score=147.27 Aligned_cols=115 Identities=22% Similarity=0.399 Sum_probs=95.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
+|+++|+++||||||+++|.+. +...+.++.+.. ...+... .+.+++||+||+..+..++..+++.+|++++|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555667776654 3344444 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNA 115 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCC
Confidence 9999999999888888764422 237899999999999876
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.93 E-value=1.6e-24 Score=144.76 Aligned_cols=118 Identities=31% Similarity=0.578 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++.+..+...+.++... .....+.+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999999887766666643 33445667888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|..++.+|+.+. .|...+... .++.|+++|+||+|+.+.
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcC
Confidence 999999999985 576666543 237899999999999754
No 91
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=3.7e-25 Score=149.95 Aligned_cols=132 Identities=34% Similarity=0.583 Sum_probs=118.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.+|++++|.+|+|||+|..+|.+..+...+.|+.. +.+...+.++++.+.+.|+||.|++++..+...+++.++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999986 6668888889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS 144 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~ 144 (156)
||+++++.||+.+..+++.+.+.... ...|+++||||+|+... ++++.+|...
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~---~~~PivlVGNK~Dl~~~--R~V~~eeg~~ 133 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGR---DDVPIILVGNKCDLERE--RQVSEEEGKA 133 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCc---CCCCEEEEEEcccchhc--cccCHHHHHH
Confidence 99999999999999999999544333 36899999999999988 7888876444
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=1.1e-24 Score=143.34 Aligned_cols=119 Identities=35% Similarity=0.671 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|++|+|||||++++.+..+.....++.. +........++..+.+++||+||+..+......+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877666666665 4455566677777899999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++++++..+..|+..+...... ...|+++|+||+|+...
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE 119 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc
Confidence 99999999999998888776543 27899999999999874
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=8.3e-25 Score=145.66 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=94.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+||+++|++++|||||++++....+. .+.++.+.+.. .... ..+.+++|||+|++.+...+..+++.+|+++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999876654 34556555442 2333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|||++++.++.++..|+..+.... ...+.|+++|+||+|+.+
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPD 124 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCcc
Confidence 9999999999988877776665321 122689999999999975
No 94
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=1.1e-24 Score=145.99 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=95.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++++|||||++++....+. .+.++.+.+.. ..... ...+.+|||||++.+..++..+++.+|++++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999876654 34566655443 23333 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++++...|+..+.... ...+.|+++|+||+|+.+.
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccC
Confidence 999999999998888777765322 1236899999999999754
No 95
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1e-24 Score=148.32 Aligned_cols=117 Identities=26% Similarity=0.404 Sum_probs=89.9
Q ss_pred eEEEEEEcCCCCChhHHHH-HHhcCC-----CCCCCCCceee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 031598 8 LLKVIILGDSGVGKTSLMN-QYVNKK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS 72 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 72 (156)
.+||+++|++++|||||+. ++.+.. +...+.|+.+. +.+... ..+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 33455666642 222211 24577889999999999875 3
Q ss_pred hhhhheecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 73 LGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+...+++.+|++++|||++++.+|+.+. .|...+..... +.|+++||||+||.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-----~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-----RVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhccc
Confidence 4556889999999999999999999996 58888765542 679999999999975
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=3.1e-24 Score=143.47 Aligned_cols=118 Identities=28% Similarity=0.602 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
.||+++|++|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||+|++.+...+...++.+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988777777765444 345567778889999999999999888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+. .|...+..... +.|+++|+||+|+.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 120 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRND 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEeeChhcccC
Confidence 999999998885 57776655432 7899999999999754
No 97
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=1.8e-24 Score=142.86 Aligned_cols=116 Identities=18% Similarity=0.396 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.++||||||++++....+. .+.++.+.+.. .+.+. .+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877665 35666655432 23333 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.++.....++..+.... ...+.|+++|+||+|+.+.
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCC
Confidence 9999999998887776665321 1226799999999999754
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=1.9e-24 Score=142.83 Aligned_cols=120 Identities=33% Similarity=0.596 Sum_probs=102.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||++++....+...+.++.... .......++..+.+.+||+||+..+...+..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 489999999999999999999888776666665433 3445567778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.+++.++..+..|+..+..... ..+.|+++|+||+|+...
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc
Confidence 99999999999999998887644 227899999999999863
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=2.2e-24 Score=145.43 Aligned_cols=120 Identities=24% Similarity=0.392 Sum_probs=97.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 47999999999999999999998776543 455554444433333 3356889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|||++++.+++....|+..+....... +.|+++|+||+|+.+
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~NK~D~~~ 123 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQ---GVPVLVLANKQDLPN 123 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcC---CCcEEEEEECcCccc
Confidence 999999999988888887776544322 689999999999974
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=2.2e-24 Score=145.25 Aligned_cols=119 Identities=18% Similarity=0.369 Sum_probs=95.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...+||+++|+++||||||++++....+. .+.++.+.+.. .+... .+.+++||+||++.+..++..+++.+|+++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34589999999999999999999877665 34666665432 33333 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||+++++++..+..++..+.. .....+.|+++|+||+|+++.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCC
Confidence 99999999999887766665542 222237899999999999864
No 101
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.8e-24 Score=147.56 Aligned_cols=119 Identities=31% Similarity=0.539 Sum_probs=101.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|.+|+|||||+++|.+..+...+.++.. ......+.+.+..+.+++||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999887766666553 3344556677777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.+++.+..|+..+....... ++|+++|+||+|+...
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~ 119 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDK---FVPIVVVGNKADSLEE 119 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEccccccc
Confidence 999999999999988887765432 7899999999999753
No 102
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=3.6e-24 Score=143.90 Aligned_cols=120 Identities=33% Similarity=0.542 Sum_probs=101.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
.||+++|.+|+|||||++++.+..+.....++..... ......++..+.+.+||+||+..+...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887665566554332 455566777788999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.++..+++.+..|+..+.+..... +.|+++|+||+|+...
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~---~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKE---SVPIVLVGNKSDLHTQ 121 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEEchhhhhc
Confidence 9999999999999988887764332 6799999999999764
No 103
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=3.8e-24 Score=134.69 Aligned_cols=114 Identities=33% Similarity=0.552 Sum_probs=86.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
||+|+|++|+|||||+++|.+.... ..+....+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988765 12233333444444555667767799999999998888888889999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 88 YDVNSMKSFDNLNNW---REEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
||.+++.+++.+..+ +..+..... ++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence 999999999997554 444443322 689999999998
No 104
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.3e-23 Score=145.10 Aligned_cols=124 Identities=31% Similarity=0.656 Sum_probs=108.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+|++++|++|||||||++++....+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 34456999999999999999999988888877888888887777777778888999999999999998888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||.++..+|..+..|+..+..... +.|+++|+||+|+.+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCE-----NIPIVLVGNKVDVKDR 128 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECccCccc
Confidence 9999999999999999999998876542 7899999999999653
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.92 E-value=9.1e-24 Score=140.56 Aligned_cols=119 Identities=33% Similarity=0.647 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+...+.++.. +........++..+.+++||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999987655555553 334455566788889999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|++++.+|.... .|+..+..... +.|+++|+||+|+.+..
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDE 120 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhch
Confidence 999999988864 46666654432 78999999999998763
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=7.2e-24 Score=140.81 Aligned_cols=117 Identities=24% Similarity=0.447 Sum_probs=93.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+++|||||+++|.+..+...+..+. .. ......+.+..+.+.+|||||+..+...+..+++.+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 389999999999999999999988765433322 11 2233345667789999999999888777788889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.+++.+. .|...+..... +.|+++|+||+|+.+.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDG 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccc
Confidence 999999999975 57676654432 7899999999999875
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.92 E-value=6.4e-24 Score=141.93 Aligned_cols=120 Identities=23% Similarity=0.486 Sum_probs=95.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+...++|+++|++++|||||++++.+..+. ...++.+.. ...+.+++ +.+.+|||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 345689999999999999999999987543 345555432 33344443 7899999999998888899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++.....|+..+.... ...+.|+++|+||+|+.++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccC
Confidence 99999999999998888877775422 1237899999999999764
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=6.9e-24 Score=141.33 Aligned_cols=115 Identities=23% Similarity=0.445 Sum_probs=93.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|.++||||||++++.+..+.. +.++.+.... .+.+. .+.+++|||||+..+...+..+++.+|++++|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886543 5566554442 33343 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+++.++..+..|+..+.+... ..+.|+++|+||+|+.+.
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA 115 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC
Confidence 9999999999888887764322 225799999999999743
No 109
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=142.33 Aligned_cols=135 Identities=39% Similarity=0.678 Sum_probs=119.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+.-.+|++++|..=+|||||+-++..+++......+....+..+.+.+.+....++||||.|++.|...-+.+++..+++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 44568999999999999999999999988877666766667777788888888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccch
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSS 145 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~ 145 (156)
++|||+.+++||+.+..|..+++..+.. .+.+++||||+||.++ +++...|.+..
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~Y 144 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAY 144 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHH
Confidence 9999999999999999999999887764 5778999999999988 88877766553
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=8.3e-24 Score=142.53 Aligned_cols=118 Identities=19% Similarity=0.407 Sum_probs=94.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..+||+++|++++|||||++++....+.. +.++.+.+.. .+.. ..+.+++|||+|++.+...+..+++.+|++++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998776653 4566654432 3333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++.....++..+... ....+.|+++|+||.|+.+.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCC
Confidence 99999999998887666665432 12236799999999999754
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=144.46 Aligned_cols=121 Identities=31% Similarity=0.597 Sum_probs=110.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
...+|++++|++++|||+|+..+....++..+.|+.- +.+...+.++ +..+.+.+|||.|+++|...++-.+..+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999985 6667778884 9999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++||++.++.+|+++ .+|+.++.+++. +.|+++||+|.||.++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhC
Confidence 999999999999997 689999998874 8999999999999954
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.91 E-value=9.8e-24 Score=139.26 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=93.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+|+++|++++|||||+++|.+... ...+.++.+.+.. .+.. ..+.+++|||||+..+...+..+++.+|++++||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666654332 2232 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.++.....|+..+..... ....+.|+++|+||+|+.+.
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCC
Confidence 99999999888888777754321 11237899999999999764
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=6.8e-24 Score=139.87 Aligned_cols=115 Identities=25% Similarity=0.469 Sum_probs=91.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
+|+++|++|+|||||+++|.+..+... .++.+.+. ..+... ..+.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998876533 45554332 233332 34789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++++.++.....|+..+..... ..+.|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPG 115 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECccccc
Confidence 9999988888777777654321 23789999999999975
No 114
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.9e-25 Score=142.30 Aligned_cols=143 Identities=41% Similarity=0.657 Sum_probs=119.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC---------CeEEEEEEEeCCCcccccchhhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~ 76 (156)
+..+|++.+|++|+||||++.++...++...-..+.+.+...+.+-++ +..+.+++|||.|++.+++...+
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 446789999999999999999999999887777788877766666552 23577899999999999999999
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL 155 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (156)
+++.+-+++++||..+..||-+++.|+.++.-+.... +..++++|||+||.+. +.++.++... .+.+.++|.
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~--La~kyglPY 158 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAA--LADKYGLPY 158 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHH--HHHHhCCCe
Confidence 9999999999999999999999999999998665544 6679999999999987 7666654443 677777664
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=5.9e-23 Score=137.42 Aligned_cols=118 Identities=27% Similarity=0.451 Sum_probs=94.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..++|+++|++++|||||++++.+..+.. +.++.+.+. ....++ ...+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999999877654 455555443 233344 3789999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||+++++++.....++..+.... ...+.|+++++||+|+.+.
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCCC
Confidence 999999998888776666664332 1236899999999999753
No 116
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=1.5e-22 Score=136.93 Aligned_cols=118 Identities=29% Similarity=0.575 Sum_probs=97.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
.|++++|++|+|||||++++....+.+.+.++....+ ...+..++....+.+||++|++.+.......++.+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999997777666666554333 345566777788999999999888877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++++|+.+. .|...+..... +.|+++|+||+|+.++
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~ 120 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQD 120 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhC
Confidence 999999999986 58887765432 6899999999999653
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.90 E-value=6.9e-23 Score=134.84 Aligned_cols=115 Identities=22% Similarity=0.493 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|.+|||||||++++.+.... ...++.+... ..+.+.. ..+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988743 3455554433 3334443 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.++.....++..+..... ..+.|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCccc
Confidence 9999999998888877765443 237899999999999865
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=5.7e-23 Score=136.34 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=89.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
+|+++|++|+|||||+++|.+... ...+.++.+... ..+.++ ...+.+|||||++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122233433332 334444 3789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++.....++..+.+... ..+.|+++|+||+|+...
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccccC
Confidence 9999999999888888777777654322 237899999999999754
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.90 E-value=1.4e-22 Score=133.57 Aligned_cols=115 Identities=22% Similarity=0.405 Sum_probs=88.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
||+++|++++|||||++++....+.. ..++.+.+. ....+. ...+++|||||+..+..++..+++.++++++|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 344444332 233333 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++.++.....++..+.+.. ...+.|+++|+||+|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCC
Confidence 999988777655555443321 1236899999999999754
No 120
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.90 E-value=8.1e-23 Score=130.71 Aligned_cols=120 Identities=24% Similarity=0.496 Sum_probs=98.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+.+.++|+++|..+|||||++++|.+.. .+...|+.+.+ .....+++ +++++||.+|+..++..|.+|++..|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~--Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ--IKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee--eEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 3457999999999999999999999887 44456666644 44454555 8999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|+|.+++..+++....+..+.. .....+.|+++++||.|++..
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccc
Confidence 999999999998887665555553 333447899999999999954
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.90 E-value=5.3e-23 Score=137.79 Aligned_cols=120 Identities=30% Similarity=0.583 Sum_probs=97.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+..+|+++|+.+|||||+++++....... ..|+.+.. ...+.+.+ +.+.+||.+|+..+...|..++..++++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeecccccee
Confidence 3677999999999999999999999765432 45555443 44455555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|+|+++++.+.+....+..+... ....+.|+++++||.|+++.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~---~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLND---PELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTS---GGGTTSEEEEEEESTTSTTS
T ss_pred EEEEecccceeecccccchhhhcch---hhcccceEEEEeccccccCc
Confidence 9999999999888887766666543 22337899999999999875
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=1.7e-22 Score=136.37 Aligned_cols=119 Identities=21% Similarity=0.388 Sum_probs=93.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|.+|+|||||++++.+..+.. +.++.+.+ ...+...+ +.+.+||+||+..+...+..+++.+|+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456899999999999999999999876542 23443332 23333444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|+|++++.++.....++..+.+.. ...+.|+++|+||+|+...
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA 133 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC
Confidence 9999999999888877777665422 2237899999999999753
No 123
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.4e-23 Score=130.54 Aligned_cols=141 Identities=34% Similarity=0.633 Sum_probs=123.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
-+..+|-+++|+-|+|||.|+..|...++..+-..+.+.......+.+.+..++++||||.|++.++.....+++.+.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 45678999999999999999999998888777778888888888889999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY 153 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~ 153 (156)
++|||...+..+..+..|+..-+++-. ++.-+++++||.||.++ +.+.+||.+. +..+.++
T Consensus 88 lmvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~--faeengl 148 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKE--FAEENGL 148 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHH--HHhhcCe
Confidence 999999999999999999988765543 37889999999999988 8899987766 4444443
No 124
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.4e-24 Score=134.75 Aligned_cols=136 Identities=37% Similarity=0.625 Sum_probs=117.5
Q ss_pred EEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598 12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (156)
Q Consensus 12 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~ 90 (156)
+++|++++|||.|+-+|....+- .+-..+.+.++-.+.+..++..+++++|||.|++.+++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888765543 34467778888888888899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccccc
Q 031598 91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYSL 155 (156)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~~ 155 (156)
.+..||++.+.|+.++.++.+. .+.+.++|||||+..+ +.+..++.+. ....+++||
T Consensus 81 ankasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~k--la~~y~ipf 137 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEK--LAEAYGIPF 137 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHH--HHHHHCCCc
Confidence 9999999999999999988775 6678899999999888 7888877666 555666665
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.89 E-value=3.4e-22 Score=135.42 Aligned_cols=118 Identities=25% Similarity=0.458 Sum_probs=94.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+..+|+++|++|||||||++++.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..+++.+++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999987753 344454433 23444554 67999999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|+|.++..++.....++..+..... ..+.|+++|+||+|+.+
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCC
Confidence 99999999988887777777654322 23689999999999974
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=5.3e-22 Score=130.04 Aligned_cols=115 Identities=30% Similarity=0.533 Sum_probs=94.6
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEEC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~ 90 (156)
|+++|++|+|||||++++.+.++...+.++.+..... ....+ ..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7899999999999999999998877777776655432 33333 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 91 NSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.++.....++..+.... ...+.|+++|+||+|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred CCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC
Confidence 99988888777777665422 2237899999999999765
No 127
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=135.52 Aligned_cols=122 Identities=40% Similarity=0.672 Sum_probs=103.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++|+|||||+++|.+..+...+.++.+..............+.+.+|||+|++.+...+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999888888877666565555554478899999999999999999999999999999
Q ss_pred EECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 88 YDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 88 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
||..+.. +++....|...+..... ++.|+++|+||+|+....
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccch
Confidence 9999954 45556788888776553 268999999999999873
No 128
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.9e-21 Score=127.11 Aligned_cols=120 Identities=20% Similarity=0.470 Sum_probs=100.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
.....+|+++|..++||||++++|...+.... .||.+.. +..+.+++ ++|++||..|++.++..|..+++..+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 34568999999999999999999998876554 7777765 55566665 8999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+|+|.++++.+.+.++.+..+. ......+.|+++++||.|+++.
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhcccc
Confidence 99999999998888766555554 4444568999999999999875
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.87 E-value=1.1e-20 Score=123.33 Aligned_cols=120 Identities=28% Similarity=0.620 Sum_probs=99.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|.+|+|||||++++.+......+.++.+.+.....+..++..+.+.+||+||+..+...+....+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999998877677777777776666777776688999999999999888888889999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.... .++.... .|...+...... +.|+++|+||+|+...
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDA 123 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcc
Confidence 99887 6666654 666666655432 6799999999999875
No 130
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=2e-23 Score=135.57 Aligned_cols=121 Identities=35% Similarity=0.655 Sum_probs=113.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
.-+|++++|..++||||+|+++...-+...+..+.+.+.......+..+..++.+||+.|++++..+..++++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999888888889999999988888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||+..+..||+...+|+..+..... .+|.++|-||+|+.++
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED 139 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh
Confidence 9999999999999999999987665 8999999999999987
No 131
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.7e-21 Score=133.31 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=89.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc-cEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY 88 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~l~v~ 88 (156)
+|+++|+++||||||+++|.+..+......+ ............+....+.+||+||+..+...+..+++.+ +++++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765543332 2222221221113346799999999999998888899998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+.+. .++.....++..+...... ...++|+++|+||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence 99997 6777776666555433221 1237899999999999765
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.86 E-value=1.5e-20 Score=125.39 Aligned_cols=120 Identities=26% Similarity=0.462 Sum_probs=93.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||++++.+..+. ...++.+.+ ...+...+ ..+.+||++|+..+...+..+++.+|++
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 344799999999999999999999987643 234454433 23344444 6799999999988888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|+|.++..++.....++..+..... ..++|+++++||+|+.+.
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATA 130 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccC
Confidence 999999999888877766666654322 226899999999999754
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=1.3e-20 Score=126.38 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=83.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCC------ceeeEEEEEE--EEE---CCeEEEEEEEeCCCcccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~ 70 (156)
.+|+++|.+++|||||+++|.+.. ....+.+ +.+.+..... ..+ ++..+.+++|||||++.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 479999999999999999998642 1111111 1122222222 222 556788999999999999
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+..+++.+|++++|||+++..++.....|.... . .++|+++|+||+|+.+.
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcC
Confidence 989999999999999999999876666655554322 1 16799999999999754
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=2e-20 Score=128.18 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=83.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 76 (156)
+..++|+++|++|||||||++++.+........+..+.+.....+.+.+. ..+.+|||||.... ... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 44689999999999999999999988643322222222333333444442 37999999996321 111 12
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+..+|++++|+|++++.++.....|...+.... . .+.|+++|+||+|+...
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~---~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG-A---EDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-c---CCCCEEEEEEccccCCh
Confidence 3567999999999999888777666666554332 1 26799999999999765
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=2.1e-20 Score=124.30 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=81.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----ccchhhhh---eeccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD 82 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 82 (156)
+|+++|.+++|||||+++|.+........+..+.......+.+++. ..+.+|||||... ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976532111111112222222333332 3799999999632 11222333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|+|++++ .+++.+..|.+.+...... ..+.|+++|+||+|+.+.
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCc
Confidence 99999999999 7888888888888765321 226799999999999765
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=2.6e-20 Score=122.93 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+.|+++|.+++|||||+++|.+.. +.....++.+.+.......+.. ...+++|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999998643 2222222333333333344432 358999999999888766677788999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|+|+++ +.+...+ ..+ .... ..|+++|+||+|+.++
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDE 119 (164)
T ss_pred EEEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCH
Confidence 9999987 3332222 111 1111 2489999999999764
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=1.5e-20 Score=127.84 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc--CCCCCCC------------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN--KKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (156)
..+|+++|.+++|||||+++|.+ ..+.... ..+.+.+.......+......+++|||||++.+...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46899999999999999999996 3332221 112333333333344445578999999999999999
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+++.+|++++|||+++.. +.....++..+.. . +.|+++|+||+|+...
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~---~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----L---GLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----c---CCCEEEEEECCCCCCC
Confidence 999999999999999998742 2222223332221 1 6799999999999754
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.84 E-value=4.7e-20 Score=122.42 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=76.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------hhhhhee
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVAFYR 79 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~ 79 (156)
.+|+++|.+++|||||+++|.+..+.....+..+.......... ....+++|||||+..... .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999988754322222122222222222 347899999999742110 0011112
Q ss_pred cccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSF--DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..|++++|+|++++.++ +....|+..+.... .+.|+++|+||+|+.+.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTF 128 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCch
Confidence 36899999999987653 44556666665433 26799999999999765
No 139
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=121.35 Aligned_cols=118 Identities=25% Similarity=0.465 Sum_probs=98.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+.+.++|...+|||||++..+...+.+.-.|+.|.. .. .++.+.+.+.+||.||+..++.+|..|.++++++++|
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mr--k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eE--EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4788999999999999999999888777777777754 22 3345558899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|+++++.+...+..+.. ++......++|++++|||.|+++.
T Consensus 96 VDaad~~k~~~sr~EL~~---LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHD---LLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred eecCCcccchhhHHHHHH---HhcchhhcCCcEEEecccccCccc
Confidence 999999877766544444 445556669999999999999976
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=6.8e-20 Score=121.55 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=82.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
.|+++|.+++|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+..++...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887665444444333333334333 13468999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|.++....+... .+..+.. .+.|+++|+||+|+.+.
T Consensus 82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccc
Confidence 999853222111 1112211 16799999999999754
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.83 E-value=2e-19 Score=116.39 Aligned_cols=116 Identities=47% Similarity=0.871 Sum_probs=90.9
Q ss_pred EEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC
Q 031598 13 ILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (156)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~ 91 (156)
++|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 34444444 5555666666666789999999999888888888889999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.++.....|......... ..+.|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 80 DRESFENVKEWLLLILINKE---GENIPIILVGNKIDLPEE 117 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhc---cCCCcEEEEEeccccccc
Confidence 99988887776322222222 227899999999999875
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.82 E-value=2e-19 Score=131.97 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=84.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-c--------ccchhhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-R--------FQSLGVAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~ 77 (156)
..++|+++|.+++|||||+|+|.+........+..+.+.....+.+++. ..+.+|||+|.. . +...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999988643333333334445555666432 479999999962 1 22111 24
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+|++++|+|++++.+++....|...+... .. .+.|+++|+||+|+.++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~---~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA---EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc---CCCCEEEEEEeecCCCh
Confidence 67899999999999998877665555544332 21 26799999999999754
No 143
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.5e-19 Score=112.12 Aligned_cols=119 Identities=20% Similarity=0.414 Sum_probs=97.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+.+|..++||||++..+.-.. +.+..|+.|.. ...+++.+ ..|++||++|++..+..|..++....++++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFn--vetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Cccccccccee--EEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 35899999999999999999998665 44456666654 55566666 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|+|.++++..++. ..++.+.+........|+++.+||.|+++..
T Consensus 91 V~Dsa~~dr~eeA---r~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 91 VVDSADRDRIEEA---RNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred EEeccchhhHHHH---HHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 9999998665555 4555666666666689999999999999863
No 144
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.81 E-value=7.3e-19 Score=132.35 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=84.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 76 (156)
+..++|+++|++|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||....... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 34589999999999999999999987532 22234444555566666666 56799999997654322 235
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.+|++++|||.+++.+++.. |+..+.. .+.|+++|+||+|+.+.
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc
Confidence 67889999999999998876654 5444321 16799999999999754
No 145
>PTZ00099 rab6; Provisional
Probab=99.81 E-value=4.7e-19 Score=118.68 Aligned_cols=97 Identities=37% Similarity=0.727 Sum_probs=85.5
Q ss_pred CCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcC
Q 031598 32 KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQAS 111 (156)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~ 111 (156)
.+.+.+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45667788888888888888889899999999999999999999999999999999999999999999999998876532
Q ss_pred CCCCCCCcEEEEEecCCCCCC
Q 031598 112 PSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 112 ~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+.|+++|+||+|+.+.
T Consensus 84 ----~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 84 ----KDVIIALVGNKTDLGDL 100 (176)
T ss_pred ----CCCeEEEEEECcccccc
Confidence 26899999999999764
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=4.5e-19 Score=116.41 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=76.6
Q ss_pred EEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------hhhhhe--ecccEE
Q 031598 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--RGADCC 84 (156)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~ 84 (156)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||+..+.. +...++ +.+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764433344444444455555555 5789999999876653 244555 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|+|..++.... .+...+.. . +.|+++|+||+|+.+.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~----~---~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE----L---GLPVVVALNMIDEAEK 116 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH----c---CCCEEEEEehhhhccc
Confidence 9999999865422 23333321 1 6799999999999765
No 147
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=1e-18 Score=127.38 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 81 (156)
..|+++|.++||||||++++.+.+..-...+..+.......+.+.+ ...+.+||+||..+ ....+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5689999999999999999998764322222222333333444422 24699999999532 222333456679
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++++|||+++.++++.+..|..++..+... ..+.|+++|+||+|+.+.
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE 286 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc
Confidence 9999999999888888888888888765321 226799999999999765
No 148
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=1e-18 Score=109.63 Aligned_cols=122 Identities=25% Similarity=0.492 Sum_probs=98.1
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.+||+++|..++|||||+..|.+.+ +++-.|+.+.. ...+.+. +.+.+++||..|+...+..|..|+...|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccce
Confidence 34667999999999999999999999877 34445665554 4444443 44799999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|+|.++...|+++..-+-++..- .....+|+++.+||.|+.-.
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELlee---eKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEE---EKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhh---hhhhccceeehhhhhHHHhh
Confidence 99999999999999886655555533 33347899999999999754
No 149
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.80 E-value=3.7e-19 Score=119.57 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=76.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccchh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG 74 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 74 (156)
+.+..+|+++|.+|+|||||++++.+........++.+.+.....+..++ .+.+|||||.. .+..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35668999999999999999999998763333334444443333333332 68999999942 233333
Q ss_pred hhhee---cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYR---GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~---~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++ .++++++|+|.+++.+.... .+...+. . .+.|+++|+||+|+...
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~-~------~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR-E------RGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH-H------cCCCEEEEEECcccCCH
Confidence 34444 35899999999886544443 2222221 1 16799999999999754
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.79 E-value=2.8e-18 Score=112.30 Aligned_cols=112 Identities=24% Similarity=0.329 Sum_probs=78.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhhee
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYR 79 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 79 (156)
++|+++|++|+|||||++++.+..... ...+..+.......+...+ ..+++|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876421 1122322333333344443 67899999996554321 224567
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCc
Confidence 8999999999998776665433322 127899999999999875
No 151
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=113.36 Aligned_cols=122 Identities=28% Similarity=0.620 Sum_probs=110.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++++++|+.|.||||++.+.+...+..++.++.+.....-.+..+.+.++|..|||.|++.+......++-.+...+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 34899999999999999999999999999999999998776666655555699999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+||+.......++..|...+.+.+. ++|++++|||.|....
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKAR 129 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceecccc
Confidence 99999999999999999999999887 8999999999999875
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.79 E-value=3.1e-19 Score=115.53 Aligned_cols=96 Identities=26% Similarity=0.323 Sum_probs=67.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-----cccchhhhheecccEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC 84 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~ 84 (156)
||+++|++++|||||+++|.+.... +.++.+ ..+. -.+|||||.. .+..... .++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 7999999999999999999977642 222221 1111 1689999972 2333323 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++.++.. ..|... . ..|+++|+||+|+.+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~----~------~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI----F------VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh----c------cCCeEEEEEeeccCC
Confidence 99999999988754 233321 1 239999999999975
No 153
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.79 E-value=1.7e-18 Score=134.42 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=87.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCC------CceeeEEEEEE--EEE---CCeEEEEEEEeCCCcc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYK------ATIGADFLTKE--VQF---EDRLFTLQIWDTAGQE 68 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~ 68 (156)
..+||+++|..++|||||+++|+... +...+. ...+.+..... +.+ ++..+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 46899999999999999999998642 111111 11233333222 222 4556899999999999
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+...+..+++.+|++++|||+++..+.+....|...+. .++|+++|+||+|+.+.
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCcc
Confidence 999999999999999999999999777666655554331 16799999999999754
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.79 E-value=1.6e-18 Score=115.72 Aligned_cols=119 Identities=23% Similarity=0.211 Sum_probs=78.0
Q ss_pred EEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cch---hhhheecccEEE
Q 031598 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV 85 (156)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~~~~l 85 (156)
++|++|+|||||++++.+.+......+..+.+.......+++ ...+.+|||||.... ..+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998864211111222222223333441 357899999996321 112 233467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHHhcCC---CCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSM------KSFDNLNNWREEFLIQASP---SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|+|+.++ .++.....|...+...... ....+.|+++|+||+|+...
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 99999988 5677777777766543221 00126799999999999865
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=3.2e-18 Score=130.40 Aligned_cols=116 Identities=20% Similarity=0.299 Sum_probs=81.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (156)
...+|+++|.+++|||||+++|.+.... ....++.+.+.........+ ..+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4578999999999999999999987642 22333343444444455555 4688999999652 33345567
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||+++..++.. ..+...+.. .+.|+++|+||+|+...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERG 161 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCcc
Confidence 889999999999998765442 233333321 17899999999999753
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=2.7e-18 Score=129.76 Aligned_cols=114 Identities=26% Similarity=0.340 Sum_probs=83.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (156)
..++|+++|.+++|||||+++|.+.+.. ....+..+.+.....+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987642 22233344455555566655 57899999997654332 2235
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||.+++.+++....|.. ..+.|+++|+||+|+.+.
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhcccc
Confidence 788999999999999887765433322 126799999999999764
No 157
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=2.9e-18 Score=117.12 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=74.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccch
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSL 73 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~ 73 (156)
+...++|+++|.+++|||||+++|.+..+.....++ .+......... .+.+||||| ++.+...
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 345689999999999999999999988765433443 33333333322 589999999 4555555
Q ss_pred hhhhee----cccEEEEEEECCChhhHHHHHHH--------HHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYR----GADCCVLVYDVNSMKSFDNLNNW--------REEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~----~~~~~l~v~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..++. .++++++|+|.++...+. ..| ...+...+.. .++|+++|+||+|+.+.
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCc
Confidence 555543 457888888876532210 111 0111111111 17899999999999764
No 158
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=4.5e-19 Score=115.54 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=77.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------cchhhhhe--ec
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--RG 80 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~~ 80 (156)
++|+++|.|++|||||+|+|.+.+......|..+.+.....+.+.+ ..+.++|+||.... +.....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999885444455555666666677767 67899999993322 22333343 57
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.|+++.|+|+++.+.-..+ ..++... ++|+++|+||+|+..+.
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~-------g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLEL-------GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHHT-------TSSEEEEEETHHHHHHT
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHHc-------CCCEEEEEeCHHHHHHc
Confidence 8999999999985432222 2223221 78999999999998764
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=3e-18 Score=125.42 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=75.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-cchh-------hh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLG-------VA 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~~ 76 (156)
.+..+|+++|.+++|||||+++|.+.++.... .+..+.+.....+..++ .++.+|||||.... .... ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45679999999999999999999988764211 11111222333444444 57899999997432 2111 12
Q ss_pred heecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++.+|++++|+|..+. +.... .++..+.. . +.|.++|+||+|+.+.
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~---~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS----L---NIVPIFLLNKIDIESK 175 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----c---CCCEEEEEEhhcCccc
Confidence 46789999999997663 33433 23333321 1 4577899999999743
No 160
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=6.6e-18 Score=122.96 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=82.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 81 (156)
..|+++|.+++|||||++++.+.+......+..+.......+.+.+ ...+.+||+||..+. ...+...++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 6789999999999999999998753221112222222333344433 257899999996432 12222334579
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++++|||+++. ++++.+..|..++..+.. ...+.|+++|+||+|+.++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--ELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hhccCCEEEEEeCccCCCh
Confidence 999999999986 677777777777765432 1226799999999999765
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=6.5e-18 Score=126.64 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=82.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc--cchhh------hhee
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLGV------AFYR 79 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~ 79 (156)
..+|+++|.+++|||||+|+|.+.+......+..+.+.....+...+. ..+.+|||+|.... ...+. ..++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987654323333334444445555442 26789999996321 12222 2357
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|+|++++.++..+..|...+... .. .+.|+++|+||+|+.+.
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~---~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEI-DA---HEIPTLLVMNKIDMLDD 324 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc---CCCCEEEEEEcccCCCc
Confidence 899999999999998777765544444332 21 26799999999999753
No 162
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.77 E-value=8.7e-18 Score=106.74 Aligned_cols=137 Identities=28% Similarity=0.363 Sum_probs=100.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCC--CCCCCCceeeEEEEEEEE-ECCeEEEEEEEeCCCcccc-cchhhhheeccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQERF-QSLGVAFYRGAD 82 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~ 82 (156)
+..|++|+|..++|||+++..++..+. .....++.. +.+...+. ..+....+.++||.|-... ...-..++.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 457999999999999999999985443 334455553 44444443 3455568999999996666 556667888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhc
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQR 151 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~ 151 (156)
++++||+..+++||+.+...-..+.. .+....+|+++++||+|+.+. +++..+- ...||...
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p--~~vd~d~--A~~Wa~rE 148 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEP--REVDMDV--AQIWAKRE 148 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccc--hhcCHHH--HHHHHhhh
Confidence 99999999999999998766666654 345558999999999999865 4444432 23355443
No 163
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=6.9e-18 Score=120.24 Aligned_cols=112 Identities=22% Similarity=0.177 Sum_probs=73.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheec
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 80 (156)
+|+++|.+|+|||||+|+|.+.+...... +..+...........+ .++.+|||||...... .....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987542221 1111111112222222 5799999999653211 12345688
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+...
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH
Confidence 99999999999876654 222322221 16799999999999753
No 164
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=109.52 Aligned_cols=121 Identities=26% Similarity=0.530 Sum_probs=107.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.-.+||.++|++..|||||+-.+.+..+.+.+..+.|..+..+.+.+.+..+.+.+||..|++++..+.+.....+-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 34699999999999999999999999888888888999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++||.+.+.++.++.+|+++-+..... .+| |+||||.|+.-
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~Nkt----AiP-ilvGTKyD~fi 138 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKT----AIP-ILVGTKYDLFI 138 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCc----cce-EEeccchHhhh
Confidence 999999999999999999988655432 334 68999999853
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.77 E-value=1.1e-17 Score=129.46 Aligned_cols=118 Identities=26% Similarity=0.267 Sum_probs=86.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+..+|+++|..++|||||+++|.+..+.....+..+.+.....+..++. ..+++|||||++.|..++...+..+|+++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45689999999999999999999988776554444444444444444432 27899999999999999988899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||+++....+.... +.. ... .++|+++++||+|+.+.
T Consensus 164 LVVda~dgv~~qT~e~----i~~-~~~---~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA----ISH-AKA---ANVPIIVAINKIDKPEA 202 (587)
T ss_pred EEEECCCCCCHhHHHH----HHH-HHH---cCCCEEEEEECcccccC
Confidence 9999987433222221 111 111 17899999999999754
No 166
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=4.6e-18 Score=115.47 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC----CC---CCCCCCceeeEEEEEEEEEC------------CeEEEEEEEeCCCccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK----KF---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER 69 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 69 (156)
+||+++|.+++|||||+++|.+. .+ .....+..+.+.....+.+. ...+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999863 11 11111112222222222222 2357899999999876
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+........+.+|++++|+|+.+.........+. +.... +.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCH
Confidence 5444444456789999999998854333322221 11111 5699999999999754
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=8.6e-18 Score=113.29 Aligned_cols=113 Identities=23% Similarity=0.177 Sum_probs=80.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCC----------------ceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (156)
+|+++|.+|+|||||++++.+......... ..+........... ...+.+|||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 489999999999999999987765433211 11112222223333 468999999999888888
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+++.+|++++|+|..++.+... ..++..+.. .+.|+++|+||+|+..+
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGE 129 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcch
Confidence 8889999999999999988654332 233333322 27899999999999863
No 168
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=8.7e-18 Score=119.25 Aligned_cols=118 Identities=22% Similarity=0.261 Sum_probs=79.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCC-CCC---------C----------CceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQY---------K----------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
.++|+++|.+++|||||+++|+...-. ... . ...+.+.......+....+.+++|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 478999999999999999999743110 000 0 00112222333344455589999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
..+.......++.+|++++|+|+++..... ...++... ... ++|+++++||+|+...+
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~----~~~---~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVC----RLR---GIPIITFINKLDREGRD 139 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHH----Hhc---CCCEEEEEECCccCCCC
Confidence 988877777889999999999998754322 12222222 211 78999999999997653
No 169
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.9e-17 Score=131.27 Aligned_cols=118 Identities=23% Similarity=0.235 Sum_probs=86.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+...|+++|..++|||||+++|.+..+.....+..+.+.....+.+++ ..+++|||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 35678999999999999999999988776544444433333334444444 6799999999999999999889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||+.+...-+.... +.. +.. .++|+++|+||+|+.+.
T Consensus 365 ILVVdAddGv~~qT~e~----i~~-a~~---~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 365 VLVVAADDGVMPQTIEA----INH-AKA---AGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEECCCCCCHhHHHH----HHH-HHh---cCCcEEEEEECcccccc
Confidence 99999988432222211 111 111 17899999999999764
No 170
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=9.7e-18 Score=117.17 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=80.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCC-----C--------CC---CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFS-----N--------QY---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~-----~--------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (156)
+|+++|..|+|||||+++|+...-. . .. ....+.+.......+.....++++|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753110 0 00 011112222233333344578999999999999888
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+++.+|++++|+|+.+..... ...++..+.. . +.|+++|+||+|+...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~----~---~~P~iivvNK~D~~~a 131 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK----L---NIPTIIFVNKIDRAGA 131 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----c---CCCEEEEEECccccCC
Confidence 899999999999999999865432 2333443322 1 6799999999999865
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=3e-17 Score=108.95 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----------chhh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----------SLGV 75 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~ 75 (156)
.++|+++|.+|+|||||+++|.+..... ...+..........+...+ ..+.+|||||..... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5789999999999999999999875321 1122222222233344444 457899999964331 1112
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++.+|++++|+|++++.+..... +...+. .. +.|+++|+||+|+.+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~---~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL----EE---GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH----hc---CCCEEEEEeccccCCc
Confidence 3457899999999999987655432 222221 11 6799999999999865
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.6e-17 Score=108.76 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=73.8
Q ss_pred EEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhheeccc
Q 031598 12 IILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD 82 (156)
Q Consensus 12 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 82 (156)
+++|.+|+|||||++++.+.... ....+..+.+........++ ..+.+|||||...... .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976521 11122222333333444444 6799999999876543 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|+|..++.+.... ++..+... . +.|+++|+||+|+.+.
T Consensus 79 ~ii~v~d~~~~~~~~~~--~~~~~~~~---~---~~piiiv~nK~D~~~~ 120 (157)
T cd01894 79 VILFVVDGREGLTPADE--EIAKYLRK---S---KKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEEEeccccCCccHH--HHHHHHHh---c---CCCEEEEEECcccCCh
Confidence 99999999876543332 12222211 1 5799999999999875
No 173
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2e-17 Score=126.01 Aligned_cols=116 Identities=23% Similarity=0.238 Sum_probs=81.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccchh-
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG- 74 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 74 (156)
..++|+++|.+++|||||+++|.+.... ....++.+.+.....+.+++. .+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999987642 223334444444455556664 56799999952 222221
Q ss_pred hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++.+|++++|||++++.+++... ++..+.. .+.|+++|+||+|+.++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCh
Confidence 23568899999999999988877653 3333321 17899999999999764
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.5e-17 Score=124.57 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=78.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhhee
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR 79 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 79 (156)
.+|+++|.+|+|||||+++|.+.... ....+..+.+.........+ ..+.+|||||... +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999987642 12233333444455555555 6899999999876 2333455678
Q ss_pred cccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.+|++++|+|..++.+... +..|+.. . +.|+++|+||+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~----~------~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK----S------NKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH----c------CCcEEEEEECccCcc
Confidence 8999999999988544322 2222221 1 679999999999764
No 175
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=1.3e-17 Score=115.18 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=78.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC--C--------------CCCCceeeEEEEEEEEEC--------CeEEEEEEEeC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS--N--------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDT 64 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~ 64 (156)
++|+++|..++|||||+.+|+...-. . +.....+.........+. +..+.+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 47999999999999999999754210 0 000011111111112222 33689999999
Q ss_pred CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
||+..+.......++.+|++++|||+.+....+....+.. .. . . ++|+++|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~---~-~---~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL---K-E---RVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH---H-c---CCCEEEEEECCCcc
Confidence 9999999999999999999999999998765543222222 21 1 1 67999999999987
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=5e-17 Score=121.43 Aligned_cols=120 Identities=19% Similarity=0.156 Sum_probs=80.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cchhh---hheecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGV---AFYRGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~~ 81 (156)
..|+++|.+++|||||++++.+.+..-...+..+.......+.+.+ ...+.+||+||.... ..+.. ..++.+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4789999999999999999998764321122222223233333331 257999999995321 12222 334569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 82 DCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 82 ~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+++++|+|+++. +.++....|...+..+.. ...+.|+++|+||+|+.+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RLLERPQIVVANKMDLPE 288 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hccCCcEEEEEeCCCCcC
Confidence 999999999864 566777777777765532 122679999999999854
No 177
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.3e-18 Score=109.40 Aligned_cols=118 Identities=22% Similarity=0.388 Sum_probs=97.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.-|++++|..++|||||++.|.+++..+. .||.. ..+....+.+ ++|+.+|..|+...+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-vPTlH--PTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-CCCcC--CChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 456899999999999999999998875543 44432 2245555656 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|+.+.+.|.+.+.-++.+...-. ..+.|+++.+||+|.+..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYA 136 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCc
Confidence 9999999999998877777664432 338999999999999976
No 178
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.5e-17 Score=113.59 Aligned_cols=114 Identities=25% Similarity=0.293 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCC-----------------CCceeeEEEEEEEE--E---CCeEEEEEEEeCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------------KATIGADFLTKEVQ--F---EDRLFTLQIWDTAG 66 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~--~---~~~~~~~~i~D~~g 66 (156)
.+|+++|..++|||||+.+|......... ....+.+....... + ++..+.+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 37899999999999999999864322110 01111111111111 1 34568899999999
Q ss_pred cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+..+......++..+|++++|+|+.+..+... ..++.... . . +.|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~---~-~---~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI---L-E---GLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH---H-c---CCCEEEEEECcccC
Confidence 99998888888999999999999988765443 22323221 1 1 57999999999986
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.74 E-value=2.2e-17 Score=129.90 Aligned_cols=119 Identities=22% Similarity=0.281 Sum_probs=85.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE--EEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.+..+|+++|..++|||||+++|.+..+.....++.+.+ .+...+...+....+++|||||+..|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 456899999999999999999999876654333333222 222223333445789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||+.+....+....+. .+ .. .++|+++|+||+|+.+.
T Consensus 322 aILVVDA~dGv~~QT~E~I~-~~----k~---~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAIN-YI----QA---ANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEECcCCCChhhHHHHH-HH----Hh---cCceEEEEEECCCcccc
Confidence 99999998854333222211 11 11 27899999999999864
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=4.3e-17 Score=123.39 Aligned_cols=123 Identities=20% Similarity=0.124 Sum_probs=80.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheec
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (156)
...|+++|.+++|||||+++|.+.+..-...+..+.......+.+.+ ..|.+||+||.... .......++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 36799999999999999999998764322222222333344455555 67999999995321 1122334577
Q ss_pred ccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCC-------CCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPS-------DPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++++|+|+++. +.+..+..+..++..+.... ...+.|+++|+||+|+.+.
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 9999999999863 34455555555555443210 1226799999999999754
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=6.1e-17 Score=106.66 Aligned_cols=116 Identities=21% Similarity=0.155 Sum_probs=73.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhhhhe
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFY 78 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~ 78 (156)
...+|+++|++|+|||||++++.+.+........... ..............+.+|||||...... .....+
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTT-RNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCce-eceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 3578999999999999999999987653222111111 1111111223346799999999654322 233456
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..+|++++|+|..++.+.. ...+...+... +.|+++|+||+|+..
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVK 125 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhccc
Confidence 7899999999999872211 12222222211 579999999999984
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.73 E-value=6.1e-17 Score=125.73 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=82.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+.|+++|..++|||||+++|.+.. ++.+..++.+.+.....+..++ ..+.+||+||++.|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999999643 3333444555555555565555 78999999999999888888889999999
Q ss_pred EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 86 LVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
+|+|+++. .+++.+ . +.... ++| +++|+||+|+.++
T Consensus 79 LVVDa~~G~~~qT~ehl----~-il~~l------gi~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----A-VLDLL------GIPHTIVVITKADRVNE 118 (581)
T ss_pred EEEECCCCCcHHHHHHH----H-HHHHc------CCCeEEEEEECCCCCCH
Confidence 99999984 333222 1 12221 567 9999999999865
No 183
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=1.5e-17 Score=112.55 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=80.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCC------------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
+.++|+++|+.++|||||+.+|........ .....+.......+........++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 568999999999999999999984431100 01111122223333312344789999999999
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+.......+..+|++++|+|+.+....... +.+..+. .. ++|+++|+||+|+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~-~~------~~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILR-EL------GIPIIVVLNKMDLIEK 137 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHH-HT------T-SEEEEEETCTSSHH
T ss_pred ceeecccceecccccceeeeecccccccccc-ccccccc-cc------ccceEEeeeeccchhh
Confidence 9988888889999999999999976443322 2222221 11 7799999999999943
No 184
>PRK00089 era GTPase Era; Reviewed
Probab=99.73 E-value=7.5e-17 Score=116.16 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=73.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc--------chhhhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAF 77 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~ 77 (156)
.+...|+++|.+|+|||||+|+|.+.+.........++........ .....++.++||||..... ......
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 3557799999999999999999998875432221111111111111 1223689999999954332 223345
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+..+|++++|+|++++..-. .......+ ... +.|+++|+||+|+..
T Consensus 82 ~~~~D~il~vvd~~~~~~~~-~~~i~~~l----~~~---~~pvilVlNKiDl~~ 127 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPG-DEFILEKL----KKV---KTPVILVLNKIDLVK 127 (292)
T ss_pred HhcCCEEEEEEeCCCCCChh-HHHHHHHH----hhc---CCCEEEEEECCcCCC
Confidence 67899999999999832211 11222222 211 679999999999984
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.73 E-value=4.8e-17 Score=126.59 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=84.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----CC------CCceeeEEEEEE--EEE---CCeEEEEEEEeCCCc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----QY------KATIGADFLTKE--VQF---EDRLFTLQIWDTAGQ 67 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~~------~~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~ 67 (156)
.+.++|+++|..++|||||+.+|+... ... .. ....+.+..... +.+ ++..+.+++|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 456899999999999999999998531 100 00 011122222221 222 445689999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++...+..+++.+|++++|+|+++....+....|.... . .++|+++|+||+|+.+.
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~----~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----E----NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----H----CCCCEEEEEECCCCCcc
Confidence 999999999999999999999999876655554444322 1 16799999999999754
No 186
>PRK10218 GTP-binding protein; Provisional
Probab=99.73 E-value=1.1e-16 Score=124.30 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=87.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC--CCCCC------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (156)
...+|+++|..++|||||+++|+.. .+... .....+.+.......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4689999999999999999999862 22111 123344555555555556668999999999999999
Q ss_pred hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+..+++.+|++++|||+.+....+. ..++..... . ++|.++|+||+|+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~---gip~IVviNKiD~~~a 135 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----Y---GLKPIVVINKVDRPGA 135 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----c---CCCEEEEEECcCCCCC
Confidence 99999999999999999987543332 222222221 1 7799999999999865
No 187
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=9.4e-17 Score=113.86 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=90.6
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccch
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSL 73 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~ 73 (156)
|.-+.....|+|.|.|++|||||++++.+.+..-.+.|..+.......+..++ .+++++||||-- ..+..
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHH
Confidence 45566778999999999999999999999987655556655566666665555 689999999921 11222
Q ss_pred hhhhe-ecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFY-RGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~-~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
....+ .-.++++|+||.+.. -+.+....++..+...+ +.|+++|.||+|+.+.
T Consensus 240 Ai~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 240 AILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch
Confidence 22233 336899999999974 35666677777777666 4699999999999854
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=7.3e-17 Score=121.83 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=77.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCc--------ccccchhhhheec
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG 80 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~~~~~~~ 80 (156)
+|+++|.+++|||||+++|.+..... ...+..+.+.........+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 48999999999999999999876321 1223333344444455555 56999999995 3334455567789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|+|..++.+... ..+...+.+ . +.|+++|+||+|+.+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~---~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK----S---GKPVILVANKIDGKKE 122 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH----h---CCCEEEEEECccCCcc
Confidence 999999999987544332 122222221 1 6799999999999865
No 189
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=8.7e-17 Score=109.29 Aligned_cols=116 Identities=25% Similarity=0.239 Sum_probs=75.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccchhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV 75 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~ 75 (156)
...++|+++|.+|+|||||+++|.+.++.....++.+.+........ ...+.+|||||. ..+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999987644344444444433333322 257999999994 23333334
Q ss_pred hheec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+++. .+++++++|..++...... +...+... .+.|+++++||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~------~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE------YGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH------cCCcEEEEEECcccCCH
Confidence 44443 4678888998876443321 11122211 16799999999999765
No 190
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=1.5e-16 Score=118.20 Aligned_cols=121 Identities=15% Similarity=0.036 Sum_probs=81.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------chhhhheecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~ 81 (156)
..|+++|.+++|||||+++|.+.+......+..+.......+.+.+ ...+.++||||...-. ......++.+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4789999999999999999998764322222222223333344332 2368999999954321 1122356789
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVN---SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++++|+|++ +.+.++....|...+..+... ..+.|+++|+||+|+...
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh
Confidence 9999999988 455666667777776654321 125799999999999754
No 191
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=4.7e-17 Score=122.44 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=96.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
-...+||+++|+.|+||||||..+....+.+.-.+-...-.....++. ..+..+|+|++...+-+......++.+|++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtP--e~vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTP--ENVPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCc--CcCceEEEecccccchhHHHHHHHhhcCEE
Confidence 345699999999999999999999999887654444433222233322 335589999998777677778889999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+++|+++++.+.+.+. .|+..+++.... ..++|+|+||||+|+.+..
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCcccc
Confidence 9999999999999984 688877765532 2388999999999998873
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=2.7e-16 Score=118.73 Aligned_cols=115 Identities=23% Similarity=0.239 Sum_probs=78.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (156)
...++|+++|.+++|||||+++|++.+.. ....+..+.+.....+..++ ..+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34589999999999999999999987532 11222222333333444444 47899999996543322
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
....++.+|++++|+|++++.+..... +...+. .. +.|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~---~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLIL----EA---GKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----Hc---CCcEEEEEECcccC
Confidence 123578899999999999887665542 222221 11 67999999999998
No 193
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.71 E-value=6.8e-17 Score=121.80 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=79.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCe
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVQFEDR 55 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (156)
.++.++|+++|..++|||||+++|+...-.- ......+.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4566999999999999999999998332100 00011223333333334445
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+.+++|||||+..+.......+..+|++++|+|++++..+.....+...+..... ..|+++|+||+|+.+.
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEccccccc
Confidence 57899999999988766555667889999999999973222221222222222221 2369999999999763
No 194
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=1.5e-16 Score=123.14 Aligned_cols=114 Identities=29% Similarity=0.324 Sum_probs=77.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce----eeEEEEEEEE------------ECCeEEEEEEEeCCCcccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI----GADFLTKEVQ------------FEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~ 70 (156)
+..-|+++|.+++|||||+++|.+..+......+. +......... ++.....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34568999999999999999999876643322211 2211111100 0000013889999999999
Q ss_pred cchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..++...++.+|++++|||+++ +.+++.+. .+. .. +.|+++|+||+|+..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~----~~---~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MY---KTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH----Hc---CCCEEEEEECCCccc
Confidence 9988889999999999999997 34433332 111 11 679999999999974
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=1.3e-16 Score=123.94 Aligned_cols=116 Identities=20% Similarity=0.213 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC--CCCCC------------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 74 (156)
++|+++|..++|||||+.+|+.. .+... .....+.+.......+...++.+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 68999999999999999999853 11111 01122333333333334445889999999999999899
Q ss_pred hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++.+|++++|+|+.+... .....++..+.. . ++|+++|+||+|+.+.
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~---~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----L---GLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----C---CCCEEEEEECCCCCCc
Confidence 999999999999999987432 223344444332 1 7799999999999765
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.70 E-value=8.9e-17 Score=121.18 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=80.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC--CC-----------------------------CCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS-----------------------------NQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|..++|||||+.+|+... .. .+.....+.+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 5667999999999999999999997421 10 1112233333333 3344
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.....+++|||||++.+.......+..+|++++|||+++.+++.... .+...+..... ..|+++|+||+|+.+
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVN 155 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccC
Confidence 44578999999999888766666778899999999999875331111 11112222222 347999999999975
No 197
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.70 E-value=1.6e-16 Score=108.76 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=72.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEEC---------------------------C----
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFE---------------------------D---- 54 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 54 (156)
++|+++|+.|+|||||+..+.+... ........+.......+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975521 11111111111110011100 0
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
....+++|||||++.+...+...+..+|++++|+|+.++.........+..+. ... ..|+++|+||+|+.++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCH
Confidence 12679999999999888777788888999999999997421111111122221 111 2479999999999764
No 198
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=4.4e-16 Score=97.52 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=67.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhhhee
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR 79 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 79 (156)
+|+++|.+|+|||||+++|.+.+... ...+..+.......+.+++. .+.++||||-... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999864321 11122222223344556664 5679999994321 112233347
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 126 (156)
.+|++++|+|.+++.. +.....++.+ + .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l----~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL----K----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH----H----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH----h----cCCCEEEEEcC
Confidence 8999999999877322 2223333333 1 17799999998
No 199
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.70 E-value=7.7e-16 Score=107.43 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=58.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------chhhhheeccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD 82 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 82 (156)
+|+++|.+++|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764322222222233344445555 679999999964332 22345678999
Q ss_pred EEEEEEECCChh
Q 031598 83 CCVLVYDVNSMK 94 (156)
Q Consensus 83 ~~l~v~d~~~~~ 94 (156)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998765
No 200
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=5.9e-16 Score=110.41 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=74.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCC----------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----- 72 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----- 72 (156)
.++|+++|.+|+|||||+++|++...... ..++.........+..++..+.+++|||||-.....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876433 233333334444455567778999999999322110
Q ss_pred ---------------------hhhhhee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 73 ---------------------LGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 73 ---------------------~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
.....+. .+|+++++++.+... +..+...+...+.. ++|+++|+||+|+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~----l~~~D~~~lk~l~~----~v~vi~VinK~D~ 155 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG----LKPLDIEFMKRLSK----RVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC----CCHHHHHHHHHHhc----cCCEEEEEECCCc
Confidence 0101222 468888888877522 11221222222222 5799999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
..+
T Consensus 156 l~~ 158 (276)
T cd01850 156 LTP 158 (276)
T ss_pred CCH
Confidence 764
No 201
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=5.1e-16 Score=101.69 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=86.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC--------CC----CceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--------YK----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
......||+|.|+.++||||+++.+........ +. .+...++.. +.+. .++.+++++||||+.+.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~-~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELD-EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEc-CcceEEEecCCCcHHHH
Confidence 345678999999999999999999987653111 11 111122211 2222 23689999999999999
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|....+.+.++++++|.+.+..+. ....+..+... . .+|+++.+||.||.+.
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~-a~~ii~f~~~~-~-----~ip~vVa~NK~DL~~a 136 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFH-AEEIIDFLTSR-N-----PIPVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchH-HHHHHHHHhhc-c-----CCCEEEEeeccccCCC
Confidence 99999999999999999999998873 23333333221 1 2899999999999976
No 202
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.69 E-value=4.1e-16 Score=121.07 Aligned_cols=115 Identities=30% Similarity=0.377 Sum_probs=77.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCc----eeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCcc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----IGADFLTKEVQ--FEDRL-----F-----TLQIWDTAGQE 68 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~ 68 (156)
..+...|+++|.+++|||||+++|.+.......... .+.+....... ..+.. . .+++|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 345678999999999999999999876543322221 11111111000 00110 1 27899999999
Q ss_pred cccchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
.|..++...++.+|++++|||+++ +.++..+.. +. . .+.|+++++||+|+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~------~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R------RKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H------cCCCEEEEEECcCCc
Confidence 999888888899999999999997 444443321 11 1 178999999999986
No 203
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=7.6e-16 Score=109.50 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=77.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC------------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
+|+++|.+++|||||+++|+...- +.......+.+.....+.. ..++++++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence 589999999999999999963210 0111222222222333333 34789999999998888
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+...++.+|++++|+|+.+...-+. ...+..+. .. ++|+++|+||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~~---~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----RY---NVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence 888899999999999999987543222 22222221 11 6799999999999864
No 204
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=1.8e-16 Score=111.37 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=78.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAF 77 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~ 77 (156)
.+..-|+++|.|++|||||+|++.+.+..-......++......+. .....++.++||||-- .+.......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4557789999999999999999999986533322222222222222 2235799999999932 222333345
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+..+|++++|+|+..+..-.. ....+.+.. .+.|+++++||+|....+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~ 130 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPK 130 (298)
T ss_pred hccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcH
Confidence 678999999999998543211 112222221 167999999999998763
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=3.3e-16 Score=107.64 Aligned_cols=114 Identities=20% Similarity=0.145 Sum_probs=73.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCC-------------------------------CCCCceeeEEEEEEEEECCeEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSN-------------------------------QYKATIGADFLTKEVQFEDRLFT 58 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (156)
||+++|.+++|||||+++|+...-.- ...+..+.+.....+. .....
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~--~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS--TPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe--cCCce
Confidence 58999999999999999997432110 0012222222222333 33467
Q ss_pred EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+|||||+..+.......++.+|++++|+|++++..-.. .... .+..... ..++++|+||+|+...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~~-----~~~iIvviNK~D~~~~ 145 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLLG-----IRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHcC-----CCcEEEEEEchhcccC
Confidence 8999999998876666677889999999999987632121 1111 1222221 2357889999999753
No 206
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.4e-16 Score=122.32 Aligned_cols=121 Identities=20% Similarity=0.232 Sum_probs=81.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC--CC---CC---------------CCCceeeEEEEEEEEECCeEEEEEEEeC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FS---NQ---------------YKATIGADFLTKEVQFEDRLFTLQIWDT 64 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (156)
..+.++|+++|..++|||||+++|+... .. .. .....+.+.......+....+.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 3467899999999999999999996311 00 00 0001122222333333344588999999
Q ss_pred CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
||+.++.......++.+|++++|+|+.+..... ...++.. +... ++|+++++||+|+...+
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~----~~~~---~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEV----CRLR---DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHH----HHhc---CCCEEEEEECCcccccC
Confidence 999999887888899999999999998753222 2222222 2222 78999999999998753
No 207
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=7.8e-17 Score=111.53 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=78.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccc-----hhhhheecccE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC 83 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~ 83 (156)
||+++|+.+|||||+.+.++..-.+.+ ....+.+.......+ ......+++||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999998888886643322 233333332333333 12236899999999875543 34567799999
Q ss_pred EEEEEECCChhhHHHHH---HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccc
Q 031598 84 CVLVYDVNSMKSFDNLN---NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGS 144 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~ 144 (156)
+|+|||+.+.+-.+++. ..+..+.++.. ++.+.++++|+|+..++.++....+..+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-----~~~v~vfiHK~D~l~~~~r~~~~~~~~~ 138 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-----NIKVFVFIHKMDLLSEDEREEIFRDIQQ 138 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHST-----T-EEEEEEE-CCCS-HHHHHHHHHHHHH
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-----CCeEEEEEeecccCCHHHHHHHHHHHHH
Confidence 99999999544333333 33444444333 7889999999999876555555544433
No 208
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=2.7e-17 Score=109.45 Aligned_cols=120 Identities=22% Similarity=0.287 Sum_probs=75.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCCCcccccchhhhh---eecccE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADC 83 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~~~ 83 (156)
...|+++|++|+|||+|..+|.+....++.... .. .....+ ....-.+.++|+||+...+...... +..+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~---n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-EN---NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SE---EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cC---CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457899999999999999999988644322222 11 111111 1223468999999999988766655 788999
Q ss_pred EEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNS-MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++||+|.+. .....++.+++-.++...... ...+|+++++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 999999985 444555555555555433322 337899999999999875
No 209
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=3e-16 Score=111.77 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=77.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
+|+++|.+|+|||||+++++...-.... ....+.......+..+ .+.+++|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 5899999999999999999743211000 0011111112223333 4789999999998887
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+...++.+|++++|+|+++.........| ..+. .. +.|+++|+||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~----~~---~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD----EA---GIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH----Hc---CCCEEEEEECCccCCC
Confidence 7888899999999999999987554433222 2221 11 6799999999999865
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=5.5e-16 Score=123.33 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=78.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch----------hhhh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF 77 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 77 (156)
.++|+++|.++||||||+|++.+.+... .+..+.+.......+...+..++++||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999876532 333444444444444445578999999997765421 1122
Q ss_pred e--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 Y--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+ ..+|++++|+|.++.+.-. .+..++.+ . +.|+++|+||+|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~---giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE----L---GIPCIVALNMLDIAEK 127 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH----c---CCCEEEEEEchhhhhc
Confidence 2 4789999999999865422 23333322 1 7899999999999754
No 211
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=4.7e-16 Score=123.60 Aligned_cols=116 Identities=24% Similarity=0.281 Sum_probs=80.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccch-h
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G 74 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 74 (156)
..++|+++|.+++|||||+++|.+.+.. ....+..+.+.....+.+++. .+.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988642 122333334444445556664 567999999531 1111 1
Q ss_pred hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++.+|++++|+|+++..+.+.... +..+.. .+.|+++|+||+|+.++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~-------~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD-------AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH-------cCCCEEEEEEchhcCCh
Confidence 234688999999999999877776543 232321 16799999999999764
No 212
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=1.3e-15 Score=115.23 Aligned_cols=117 Identities=23% Similarity=0.245 Sum_probs=78.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (156)
...++|+++|.+++|||||+++|++... .....+..+.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 3469999999999999999999997653 222233333333333444444 56889999995432111
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+++.+|++++|+|+.++.+.+... +...+. .. +.|+++|+||+|+.++
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~----~~---~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLAL----EA---GRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----Hc---CCcEEEEEECccCCCH
Confidence 123567899999999999887655542 222221 11 6799999999999854
No 213
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=9.2e-16 Score=121.94 Aligned_cols=116 Identities=22% Similarity=0.242 Sum_probs=77.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccchhhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 77 (156)
...+|+++|.+++|||||+++|.+.+... ...++.+.+.........+ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 35789999999999999999999875321 2233333343333333444 5789999999653 23334456
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|+|+++...... ..+...+.. .+.|+++|+||+|+.+.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccc
Confidence 789999999999987432111 233333321 17899999999998653
No 214
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=5e-16 Score=101.31 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=74.6
Q ss_pred EEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------hhhhheecccEE
Q 031598 13 ILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC 84 (156)
Q Consensus 13 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~ 84 (156)
++|++|+|||||++++.+.... .................... ...+.+||+||...... .....++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987544 22222222222222222221 35899999999765543 334477889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|+|.++........ +..... . .+.|+++|+||+|+..+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~----~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---E----RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---h----cCCeEEEEEEccccCCh
Confidence 9999999987665543 222221 1 17899999999999876
No 215
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=9e-16 Score=104.33 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=77.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 73 (156)
.++|+++|..++|||||+++|+..... .......+.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 479999999999999999999753100 000112223333333444455578999999999888777
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
....+..+|++++|+|+.....-+. ...+..+. .. +.| +++|+||+|+..+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~---~~~~iIvviNK~D~~~~ 133 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLAR----QV---GVPYIVVFLNKADMVDD 133 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----Hc---CCCcEEEEEeCCCCCCc
Confidence 7788889999999999987532221 12222221 11 556 7899999999743
No 216
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.68 E-value=4.1e-16 Score=119.71 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=81.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC-CCCC----C---------------CCCceeeEEEEEEEEECCeEEEEEEEeC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK-KFSN----Q---------------YKATIGADFLTKEVQFEDRLFTLQIWDT 64 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~-~~~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 64 (156)
..+.++|+++|.+++|||||+++|+.. .... . .....+.+.......++...+.+++|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 356789999999999999999998531 1100 0 0011123333334444555689999999
Q ss_pred CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||+..+.......++.+|++++|+|+.+...-. ...+++.. ... ++|+++|+||+|+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~~---~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVT----RLR---DTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHH----Hhc---CCCEEEEEECccccCC
Confidence 999888877777889999999999998752211 22333322 111 7899999999999754
No 217
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.67 E-value=1.4e-15 Score=103.73 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceee---EEEEEEEEECCeEEEEEEEeCCCcccccchhhhh-----ee
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR 79 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 79 (156)
.++|+++|.+|+|||||+|.+.+...........+. +.....+... ....+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543322221111 1111111111 12368999999965432222222 56
Q ss_pred cccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.+|+++++.+. . +... ..+++.+... +.|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~~-~---~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISST-R---FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeCC-C---CCHHHHHHHHHHHHh-------CCCEEEEEecccchh
Confidence 78888887432 2 2322 2344444321 568999999999954
No 218
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.4e-16 Score=103.25 Aligned_cols=120 Identities=24% Similarity=0.379 Sum_probs=91.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC---C----CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhe
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY 78 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 78 (156)
+..+.++++|..++|||||+........ . ..-.++.+ .....+...+ ..+.+||..|++..+++|..++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCN--APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeecc--ceeEEEEcCChHHHHHHHHHHH
Confidence 3458899999999999999998764321 1 11122332 3333344443 5799999999999999999999
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++++++||+.+++.|+.....++.+.. .....+.|+++.+||.|+.+.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~---~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVE---NEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHH---HHHhcCCchhhhcchhhhhhh
Confidence 999999999999999999988666655542 223338999999999999875
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.66 E-value=1.1e-15 Score=105.76 Aligned_cols=116 Identities=18% Similarity=0.206 Sum_probs=73.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC--C---------------------------CCCCCceeeEEEEEEEEECCeEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF--S---------------------------NQYKATIGADFLTKEVQFEDRLFTLQ 60 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (156)
+|+++|..++|||||+.+|+...- . .......+.+.......+......++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999863210 0 00011111222222233333447899
Q ss_pred EEeCCCcccccchhhhheecccEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FD---NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|||||+..+...+...++.+|++++|+|+++... +. ....... +..... ..|+++|+||+|+..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~iiivvNK~Dl~~ 151 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG-----VKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC-----CCeEEEEEEcccccc
Confidence 99999998887777777888999999999998521 11 1111111 111111 358999999999984
No 220
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.65 E-value=3.4e-19 Score=116.54 Aligned_cols=126 Identities=38% Similarity=0.737 Sum_probs=110.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE-EEEEEEeCCCcccccchhhhheecccEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
-..+++|+|.-|+|||+++.+...+.+...+..+.+.+.......-+... +++++||..|++.+..+...+++.+++..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 35899999999999999999999888888888888877666665544433 58899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++..|+.+..|.+.+..-+......-.|+++..||||+...
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 99999999999999999999988777777777889999999999865
No 221
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.65 E-value=5.3e-16 Score=102.27 Aligned_cols=100 Identities=20% Similarity=0.190 Sum_probs=66.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc----chhhhheecccEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAFYRGADCCV 85 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~~~~~~~~l 85 (156)
+|+++|.+++|||||++++.+.... ...+. ...+... .+|||||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998865421 11111 1122222 269999963222 12223468899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|+|+++..++. ..|...+ . .+.|+++++||+|+.+.
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~----~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----G----VSKRQIAVISKTDMPDA 106 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----c----CCCCeEEEEEccccCcc
Confidence 999999887653 2333322 1 15699999999999754
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=3.2e-15 Score=98.65 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=70.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccchhhhhee
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR 79 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 79 (156)
.|+++|.+|+|||||++.+.+........++.+.+........+. .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 379999999999999999996554444444444443333333332 789999999433 2222333333
Q ss_pred ---cccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 ---GADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ---~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++++++|.....+.. .+..|+... +.|+++|+||+|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKK 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCCh
Confidence 357889999988653222 222333221 5799999999999754
No 223
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=1.5e-15 Score=118.19 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=73.5
Q ss_pred cCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch------hhhhe--ecccEEEE
Q 031598 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL 86 (156)
Q Consensus 15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~l~ 86 (156)
|.+++|||||+|++.+.+......++.+.+.....+.+++ ..+++|||||+..+... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876444445555555555555555 46899999998776543 23333 46899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+|.++.+.. ..+..++. . .+.|+++|+||+|+.++
T Consensus 79 VvDat~ler~---l~l~~ql~---~----~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---E----LGIPMILALNLVDEAEK 114 (591)
T ss_pred EecCCcchhh---HHHHHHHH---h----cCCCEEEEEehhHHHHh
Confidence 9999875421 22222222 1 16899999999999754
No 224
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=1.5e-15 Score=120.45 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=82.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-----C---------------CCCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-----N---------------QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (156)
...++|+++|..++|||||+++|+...-. . .+..+.. .....+.. ....+++||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~--~~~~~~~~--~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIE--SAATSCDW--DNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcc--cceEEEEE--CCEEEEEEECC
Confidence 45689999999999999999999743100 0 0111111 11122333 34789999999
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+.++...+..+++.+|++++|+|+.+.........|. .+. .. ++|+++|+||+|+...
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~----~~---~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QAD----RY---GIPRLIFINKMDRVGA 140 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH----hc---CCCEEEEEECCCCCCC
Confidence 99999888899999999999999999876655443332 221 11 6799999999999875
No 225
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=4.7e-15 Score=99.08 Aligned_cols=116 Identities=26% Similarity=0.311 Sum_probs=83.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGVA 76 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~ 76 (156)
...-|+++|.+++|||||||+|.+++--.....++|.+.....+.+++. +.++|.|| .+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 4578999999999999999999997743444667777777777777663 78999999 4455556666
Q ss_pred heec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 77 FYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 77 ~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|++. ..++++++|...+-.-.+. +.++ +. ... ++|+++|+||+|.....
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~-~l---~~~---~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIE-FL---LEL---GIPVIVVLTKADKLKKS 151 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-HHHH-HH---HHc---CCCeEEEEEccccCChh
Confidence 6643 4788889998876432221 1122 22 212 88999999999998763
No 226
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=5.6e-15 Score=110.44 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=79.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcC-------CC------C-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK-------KF------S-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~-------~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
..++.++|+++|..++|||||+++|++. .. . .......+.+.......+.....++.++||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3566799999999999999999999852 00 0 00111222333333344444456889999999988
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~ 132 (156)
|.......+..+|++++|+|+.+....+. .+.+..+. . . ++|.+ +|+||+|+.++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~-~---~---gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-Q---V---GVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH-H---c---CCCeEEEEEEecCCcch
Confidence 87666677788999999999987432221 12222221 1 1 56755 67999999753
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.63 E-value=2.6e-15 Score=110.83 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=79.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cchhhhhe
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY 78 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 78 (156)
..|+++|.|++|||||.|+|.+++.. -...|..+.+.........+ ..|.++||+|-+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999988754 23345555566566665555 56999999995422 23334456
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+|++++|+|....-+-.. ....+.++ . . +.|+++|+||+|-.+.
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr-~---~---~kpviLvvNK~D~~~~ 127 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR-R---S---KKPVILVVNKIDNLKA 127 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH-h---c---CCCEEEEEEcccCchh
Confidence 78999999999998443222 11222222 1 1 6799999999999844
No 228
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=8.5e-15 Score=116.18 Aligned_cols=118 Identities=18% Similarity=0.105 Sum_probs=81.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC-----CC-------------CCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-----NQ-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
..+.++|+++|..++|||||+++|+...-. .. .....+.+.....+..+ +..+++|||||
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 345689999999999999999999732110 00 01122222223333333 47899999999
Q ss_pred cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+...+...++.+|++++|+|+.+....+... .+..+ ... +.|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~----~~~---~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQA----NRY---EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHH----HHc---CCCEEEEEECCCCCCC
Confidence 9888888888999999999999999865444322 22222 111 6799999999999865
No 229
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.62 E-value=2.7e-15 Score=119.34 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=82.6
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcC---------------CCCC---CCCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNK---------------KFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (156)
.....+||+++|..++|||||+++|+.. ++.. .+..+.........+.+++..+.+++||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 3456789999999999999999999742 1111 011222222222233356667899999999
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+..+.......++.+|++++|+|+.+....+....|.. .. . . +.|+++|+||+|....
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~-~---~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---K-E---NVKPVLFINKVDRLIN 153 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---H-c---CCCEEEEEEChhcccc
Confidence 999888888889999999999999987533222222211 11 1 1 6688999999999753
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.1e-14 Score=110.59 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=80.6
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCC------CCC--------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
..++.++|+++|..++|||||+++|++.. ... ......+.+.......+......++++|+||+..
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 35667999999999999999999998521 000 1112222333333333333446889999999999
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
|.......+..+|++++|+|+.+...-+. .+.+..+ ... ++| +++++||+|+.+.
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~-~~~------gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLA-KQV------GVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HHc------CCCeEEEEEecccccCH
Confidence 87777777888999999999997643222 2222222 111 567 7889999999764
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.61 E-value=1.6e-14 Score=108.45 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=80.6
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
..++.++|+++|..++|||||+++|++..-. .......+.+.......+.....++.++||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3566799999999999999999999864110 00111123333333344444456889999999988
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
+.......+..+|++++|+|+.....-+. ...+..+ .. . ++| +++++||+|+.+.
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~-~~---~---g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLA-KQ---V---GVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---c---CCCEEEEEEEccCCCCH
Confidence 87676777888999999999987532221 1222222 11 1 567 7789999999864
No 232
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=107.24 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=84.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh--------hh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV--------AF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~ 77 (156)
.-++++++|.|++|||||+|.|.+++-. -+..+..+.++....+.+++ +.+.++||.|..+...... ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3589999999999999999999988743 33455666777778888877 7899999999554433222 34
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|.+++|+|.+.+..-.... +..... .+.|+++|.||.||..+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-----~~~~~~----~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-----LIELLP----KKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-----HHHhcc----cCCCEEEEEechhcccc
Confidence 67899999999999963222211 111111 27899999999999986
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.61 E-value=1e-14 Score=108.91 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=79.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCC--------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSN--------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
.++.++|+++|..++|||||+.+|.+..... ......+.+.......+......+.++||||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998531000 00112223333344445445568899999999888
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
.......+..+|++++|+|+.+...-+. .+.+..+. . . ++| +++|+||+|+.++
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~-~---~---g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLAR-Q---V---GVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-H---c---CCCEEEEEEEecCCcch
Confidence 7666666788999999999987432222 12222221 1 1 567 6789999999753
No 234
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=8.5e-15 Score=103.13 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=83.9
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------------c
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------Q 71 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~ 71 (156)
.+.+.++|+|+|+|++|||||.|.+++.+.........+++...-- .+....+++.++||||-..- .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg-i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG-IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeE-EEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 4577899999999999999999999999987766666554443322 23455589999999992111 1
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.....+..+|.+++++|+++....-. ...+..+..+. ++|-++|.||.|....
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQ 200 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchh
Confidence 122234567999999999997432111 22233333333 6789999999999765
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.60 E-value=6.9e-16 Score=116.57 Aligned_cols=120 Identities=17% Similarity=0.278 Sum_probs=80.4
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCC--C---------------------------CCCCCceeeEEEEEEEEECC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF--S---------------------------NQYKATIGADFLTKEVQFED 54 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~ 54 (156)
..++.++|+++|..++|||||+.+|+...- . .......+.+.......+..
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 356779999999999999999998863110 0 00011122233333444555
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCCCCCC-cEEEEEec
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFD-------NLNNWREEFLIQASPSDPDNF-PFVVLGNK 126 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK 126 (156)
....++++|+||+.+|.......+..+|++++|+|+.+. .|+ ...+.+. +.... ++ ++++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~~------gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFTL------GVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHHc------CCCcEEEEEEc
Confidence 567899999999999998889999999999999999873 222 1111111 11111 55 47889999
Q ss_pred CCCCC
Q 031598 127 IDVDG 131 (156)
Q Consensus 127 ~Dl~~ 131 (156)
+|+.+
T Consensus 155 mD~~~ 159 (447)
T PLN00043 155 MDATT 159 (447)
T ss_pred ccCCc
Confidence 99873
No 236
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.60 E-value=7.3e-15 Score=110.20 Aligned_cols=123 Identities=17% Similarity=0.127 Sum_probs=75.8
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEE------------------C--C----e
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQF------------------E--D----R 55 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~ 55 (156)
+..++.++|+++|..++|||||+.+|.+... ..+.....+.........+ + + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 5667789999999999999999999965311 1111111111111100000 0 0 1
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+++|||||+..+..........+|++++|+|+.++. ..+... .+..+ .... ..|+++|+||+|+.++
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~-----i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIG-----IKNIVIVQNKIDLVSK 154 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcC-----CCcEEEEEEeeccccc
Confidence 257999999999887666555566789999999999653 112111 11112 1111 2368999999999864
No 237
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=9.8e-15 Score=99.46 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=73.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------hh----h
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LG----V 75 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~ 75 (156)
++|+++|.+|+||||++|++++.+...... +..+...........+ ..+.++||||-..... .. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999886543221 1222233333333444 5799999999443311 11 1
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
......|++++|+++.+. + ......++.+...+.... ..++++|.|++|...+
T Consensus 79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKV--LDHTIVLFTRGDDLEG 131 (196)
T ss_pred hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHh--HhcEEEEEECccccCC
Confidence 123568999999998872 2 122333444444443211 2478999999998764
No 238
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.60 E-value=1.5e-14 Score=108.07 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=77.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC----------------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK----------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
.++.++|+++|..++|||||+++|.+.- ...+.... .+.......+......+.+|||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCchH
Confidence 4667999999999999999999997320 00111122 23333344455555789999999998
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDGG 132 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~ 132 (156)
.|.......+..+|++++|+|+.+....+.. +.+..+. .. ++|.+ +|+||+|+.++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~-~~------gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLAR-QV------GVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-Hc------CCCEEEEEEEecccCCH
Confidence 8876666666788999999999874322221 1122221 11 55654 68999999764
No 239
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.59 E-value=4.7e-14 Score=100.95 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=75.1
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-------
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------- 73 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------- 73 (156)
++...+.++|+++|.+|+||||++|++++.+.... .....+.+.........+ ..+.++||||..+....
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence 44566789999999999999999999998864321 111111222222223333 68999999995543211
Q ss_pred hhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++ ...|++++|...+.....+.-...++.+...+...- ..++++|.|++|....
T Consensus 110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCCC
Confidence 11111 258999999654432111111334444444443221 3478999999998753
No 240
>PRK00007 elongation factor G; Reviewed
Probab=99.59 E-value=1.7e-14 Score=114.46 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=81.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC--CCC----------------CCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSN----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
..+.++|+++|..++|||||+++|+... ... ...+..+.+.....+..+ +..++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 4457899999999999999999997311 000 012222223223333333 47899999999
Q ss_pred cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+..+.......++.+|++++|+|+......+....|. .+. .. ++|+++++||+|+.+.+
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~----~~---~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QAD----KY---KVPRIAFVNKMDRTGAD 143 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHH----Hc---CCCEEEEEECCCCCCCC
Confidence 9888777788889999999999988764433322222 221 11 67999999999998653
No 241
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=9.7e-15 Score=109.49 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=76.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCC---CCCCceeeEEEEEE--------------EEE----CC------eEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKE--------------VQF----ED------RLFT 58 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 58 (156)
++.++|+++|..++|||||+++|.+..... ......+....... ++. +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567899999999999999999997542211 10111111110000 000 01 1357
Q ss_pred EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||||++.+...+...+..+|++++|+|++++.......+.+..+ .... ..|+++|+||+|+.+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCH
Confidence 999999999999888888888899999999999753111112222222 2221 2368999999999864
No 242
>PRK12739 elongation factor G; Reviewed
Probab=99.58 E-value=1.3e-14 Score=115.15 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=80.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC-----CC-------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK-----FS-------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
.+.++|+++|..++|||||+++|+... .. ....+..+.+.....+..+ +..++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 457899999999999999999997421 00 0012222223223333333 478999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+...+...++.+|++++|+|+.+....+.. ..+..+ ... +.|+++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~----~~~---~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA----DKY---GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH----HHc---CCCEEEEEECCCCCCC
Confidence 88888888899999999999999876433322 222222 111 6799999999999865
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=99.57 E-value=6.9e-14 Score=105.75 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=78.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC------C----------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK------K----------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
.++.++|+++|..++|||||+++|.+. . ...+..+ +.+.......+.....++.++||||+.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKAR--GITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhc--CceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 456799999999999999999999622 1 0111112 233333444455555789999999998
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
.+.......+..+|++++|+|+.+...-+. .+.+..+ .. . ++| +++++||+|+.++
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~-~~---~---gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLA-RQ---V---GVPSLVVFLNKVDVVDD 192 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHH-HH---c---CCCeEEEEEEeeccCCH
Confidence 876666666677999999999986532221 1111111 11 1 678 5789999999854
No 244
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.56 E-value=1.8e-14 Score=116.22 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=82.6
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEE--------------
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFS----------------NQYKATIGADFLTKEVQF-------------- 52 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------- 52 (156)
+...+.++|+|+|..++|||||+.+|+...-. .......+.......+.+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 44567899999999999999999999743210 000111111111111221
Q ss_pred CCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+...+.++++||||+.+|.......++.+|++++|+|+.+....+....|.... . . ++|+++++||+|+.
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~----~-~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----G-E---RIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH----H-C---CCCEEEEEECCccc
Confidence 123578999999999999888889999999999999999875544433333322 1 1 78999999999998
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=99.56 E-value=6.5e-14 Score=104.71 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=79.9
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
..++.++|+++|..++|||||+++|++.... .......+.+.......+.....++.++||||+..
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3466799999999999999999999863110 00011223333333444444556889999999988
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEEecCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFV-VLGNKIDVDG 131 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~ 131 (156)
+.......+..+|++++|+|+.+...-+. ...+..+. . . +.|.+ +++||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~-~---~---g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-Q---V---GVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHH-H---c---CCCEEEEEEeecCCcc
Confidence 87666777889999999999987533221 22222221 1 1 56875 6899999975
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.56 E-value=3.3e-14 Score=107.58 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=78.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC--C-----------------------------CCCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--F-----------------------------SNQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 53 (156)
.++.++|+++|..++|||||+.+|+..- . ..+... +.+.......+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence 4667999999999999999999987411 0 111122 223333334445
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCCCCCc-EEEEEec
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---F---DNLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 126 (156)
.....++++||||+.+|.......+..+|++++|+|+..... + ....+-+. +...+ ++| +++++||
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~~------gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFTL------GVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHHc------CCCeEEEEEEc
Confidence 556789999999999998888888899999999999987531 1 01111111 11211 555 6799999
Q ss_pred CCCC
Q 031598 127 IDVD 130 (156)
Q Consensus 127 ~Dl~ 130 (156)
+|..
T Consensus 155 mD~~ 158 (446)
T PTZ00141 155 MDDK 158 (446)
T ss_pred cccc
Confidence 9954
No 247
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.56 E-value=7.9e-14 Score=97.99 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=73.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---h-------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---L------- 73 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~------- 73 (156)
....++|+++|.+|+|||||+|++++......... ..+..........++ ..+.++||||-.+... .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45579999999999999999999998865332211 122222222233333 6799999999543310 0
Q ss_pred hhhhee--cccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYR--GADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~--~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++. ..+++++|...+... ... -...++.+...+...- ..++++|.||+|....
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 112232 468888887555432 222 1233444444433211 3479999999999755
No 248
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=7.5e-14 Score=109.10 Aligned_cols=114 Identities=21% Similarity=0.163 Sum_probs=74.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC---CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
-|.++|..++|||||+++|.+.+ .........+.+.....+...+ +..+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998643 2222223333333222232222 2468999999999887776777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
|+|+.+...-+. .+.+ .+.... +.| +++|+||+|+.++
T Consensus 81 VVda~eg~~~qT-~ehl-~il~~l------gi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 81 VVACDDGVMAQT-REHL-AILQLT------GNPMLTVALTKADRVDE 119 (614)
T ss_pred EEECCCCCcHHH-HHHH-HHHHHc------CCCeEEEEEECCccCCH
Confidence 999987432121 1111 122222 445 6799999999764
No 249
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.56 E-value=1.5e-14 Score=108.48 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=74.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC---------------------------------CCCCCceeeEEEEEEEEECCe
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS---------------------------------NQYKATIGADFLTKEVQFEDR 55 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (156)
++|+++|..++|||||+.+|+...-. ++.....+.+... ..+...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence 58999999999999999999633210 0001111122222 223334
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++.++||||+..|.......+..+|++++|+|+.....-+.... ..+...+. ..++++|+||+|+.+.
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~--~~~~~~~~-----~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH--SYIASLLG-----IRHVVLAVNKMDLVDY 148 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH--HHHHHHcC-----CCcEEEEEEecccccc
Confidence 4689999999999887666677889999999999987543222111 11222222 2368999999999864
No 250
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.5e-15 Score=92.56 Aligned_cols=118 Identities=23% Similarity=0.420 Sum_probs=90.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..+++++|..|+||||+..++.-.+.. ...|+.+.. ...+++++ ..+++||..|+-..+..|..+++..+++++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfn--ve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFN--VETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcC--cccccccc--ccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5689999999999999998888655432 234555543 44455544 889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+|.+|.+........+-.++ ......+..+++++||.|....
T Consensus 92 VVDssd~dris~a~~el~~mL---~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSML---QEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred EEeccchhhhhhhHHHHHHHh---ccHhhcCceEEEEeccccchhh
Confidence 999999887666544333333 3344446788999999998764
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.54 E-value=3e-14 Score=108.50 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=77.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC--C-------------------------------CCCCceeeEEEEEEEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N-------------------------------QYKATIGADFLTKEVQ 51 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-------------------------------~~~~~~~~~~~~~~~~ 51 (156)
.+..++|+++|..++|||||+.+|+...-. . +.....+.+.....
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~-- 101 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRY-- 101 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEE--
Confidence 466799999999999999999999744210 0 00011112222222
Q ss_pred ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+.....++.++||||+..+.......+..+|++++|+|+.....-+.... ..+...+. ..|+++|+||+|+.+
T Consensus 102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg-----~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLG-----IKHLVVAVNKMDLVD 174 (474)
T ss_pred eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhC-----CCceEEEEEeecccc
Confidence 33344689999999998886655666789999999999987532111111 11222222 237899999999985
Q ss_pred C
Q 031598 132 G 132 (156)
Q Consensus 132 ~ 132 (156)
.
T Consensus 175 ~ 175 (474)
T PRK05124 175 Y 175 (474)
T ss_pred c
Confidence 4
No 252
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.54 E-value=2.2e-14 Score=106.04 Aligned_cols=116 Identities=24% Similarity=0.235 Sum_probs=79.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------h
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G 74 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 74 (156)
..++|+++|.|++|||||+|++++++-. ....+..+.+.....+..++ ..+.++||.|...-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999987632 22233333444455555556 56889999993221111 1
Q ss_pred hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+..+|++++|+|++.+.+-+.. .+..+.... +.++++|.||+|+.++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-----~ia~~i~~~---g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-----RIAGLIEEA---GRGIVIVVNKWDLVEE 304 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-----HHHHHHHHc---CCCeEEEEEccccCCc
Confidence 1234678999999999987654432 333333322 7799999999999876
No 253
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=3.9e-14 Score=106.39 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=91.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC-----------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
.+..|+.|+..-.-|||||..+|+...- .++...|......+..+. .+..+.++++|||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~-~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYK-DGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEE-cCCceEEEeecCCCcc
Confidence 4578999999999999999999873211 122233332222222222 3566899999999999
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+|..+....+..|+++++|+|++..-.-+.+..++..+.. +..+|.|+||+|++..+
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSAD 193 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCC
Confidence 9999999999999999999999998777777777777642 67899999999999984
No 254
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=1e-13 Score=98.10 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=83.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheec
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRG 80 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~ 80 (156)
+..+.++|.|++|||||++++.+.+..--..+..+.......+.+++- .++++-|.||.-+- ....-..++.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 356789999999999999999988754222222222222333444442 25999999993322 2222344578
Q ss_pred ccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|..+++|+|++.+ ..++.++....++.-+-+ ...+.|.++|+||+|+++.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA 327 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH
Confidence 9999999999998 788887777777654433 2336799999999999643
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=99.98 Aligned_cols=120 Identities=18% Similarity=0.333 Sum_probs=82.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEE-EEEECCeEEEEEEEeCCCccc-------ccchhhh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-EVQFEDRLFTLQIWDTAGQER-------FQSLGVA 76 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 76 (156)
...+++++++|..|+||||+||+++.....+...-..+.+.... ...+++ -.+.+||+||..+ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 34679999999999999999999996554433222222211111 122333 5799999999444 6667778
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++...|.++.++++.++.--- -.+++..+..... +.++++++|.+|...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGT-DEDFLRDVIILGL-----DKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccC-CHHHHHHHHHhcc-----CceeEEEEehhhhhcc
Confidence 889999999999999875322 2344455543333 4699999999999765
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=99.52 E-value=7.3e-14 Score=112.64 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=79.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC--C--------------CCCCceeeEEEEEEEEEC--------CeEEEEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N--------------QYKATIGADFLTKEVQFE--------DRLFTLQ 60 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~ 60 (156)
..+.++|+++|..++|||||+++|+...-. . +.....+.......+.+. +..+.++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 455689999999999999999999853210 0 000011111111112222 2257899
Q ss_pred EEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 61 i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
++||||+.++.......++.+|++++|+|+.+.-..+.-.-| ..+. .. +.|+++|+||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~----~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQAL----QE---RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHH----Hc---CCCEEEEEEChhhh
Confidence 999999999988888889999999999999986443332222 2221 11 67999999999998
No 257
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.52 E-value=2.7e-13 Score=94.08 Aligned_cols=113 Identities=22% Similarity=0.248 Sum_probs=71.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCC----------------Cc-------eeeEEE---------------EEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYK----------------AT-------IGADFL---------------TKEVQ 51 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~----------------~~-------~~~~~~---------------~~~~~ 51 (156)
||+++|+.++|||||+.+|....+..... .+ .+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998654421110 00 000000 01111
Q ss_pred ECCeEEEEEEEeCCCcccccchhhhhee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 52 FEDRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
..+..++++||||+..+.......+. .+|++++|+|+.....-.. ..++..+. .. ++|+++|+||+|+
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~----~~---~ip~ivvvNK~D~ 150 (224)
T cd04165 81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLAL----AL---NIPVFVVVTKIDL 150 (224)
T ss_pred --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHH----Hc---CCCEEEEEECccc
Confidence 12357899999999888655555554 6899999999887543221 22222221 11 6799999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
.++
T Consensus 151 ~~~ 153 (224)
T cd04165 151 APA 153 (224)
T ss_pred cCH
Confidence 754
No 258
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.6e-13 Score=105.66 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=81.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc------cchhhhhe--e
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--R 79 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------~~~~~~~~--~ 79 (156)
..+++++|.|++|||||.|++.+.+..--..+..+.+.......+++ ..++++|+||.-.. +.....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999998876655566665665555565555 56999999993322 33333344 4
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..|+++-|+|++|.+.--.+.-++.++ +.|++++.|++|..++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQLlE~----------g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLEL----------GIPMILALNMIDEAKK 123 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHHHHHc----------CCCeEEEeccHhhHHh
Confidence 569999999999976433333223332 7899999999999876
No 259
>COG2262 HflX GTPases [General function prediction only]
Probab=99.50 E-value=4.7e-13 Score=97.82 Aligned_cols=123 Identities=22% Similarity=0.239 Sum_probs=85.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhhh------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVA------ 76 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------ 76 (156)
+.....|.++|..++|||||.|++.+...........+-+.....+...+ +..+.+-||.|--. ......+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence 34568899999999999999999998776544444444556666666665 35788999999211 1111122
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
....+|+++.|+|+++|...+.+.....-+... .....|+|+|.||+|+..+
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLED 319 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCc
Confidence 125689999999999996655555444444332 2236899999999998765
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.50 E-value=8.6e-14 Score=109.59 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=74.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-------------CCC------------------ceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-------------YKA------------------TIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|.+++|||||+++|+...-.-. ... ..+.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34568999999999999999999985421100 000 00111111122223
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.....+.++||||+..+.......+..+|++++|+|+.....-+... ... +..... ..++++|+||+|+.+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~-~~~~~~-----~~~iivvvNK~D~~~ 171 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSF-IASLLG-----IRHVVLAVNKMDLVD 171 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHH-HHHHhC-----CCeEEEEEEeccccc
Confidence 33467889999999887655566678999999999997653221111 111 122221 247899999999975
No 261
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.49 E-value=1e-13 Score=88.76 Aligned_cols=98 Identities=28% Similarity=0.438 Sum_probs=65.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----ccccchhhhheecccEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCC 84 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~ 84 (156)
-||+++|+.|||||||+++|.+.+.. +..+. .+.+.+ .++||||. ..+..-.......+|++
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~KTq-------~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ-------AIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cCccc-------eeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 48999999999999999999987642 22221 112212 34799992 22333333444679999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|.|++++.+.-. ..+...+ +.|+|=|+||+|+..
T Consensus 68 ~ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 68 LLLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPS 103 (143)
T ss_pred EEEecCCCCCccCC-chhhccc----------CCCEEEEEECccCcc
Confidence 99999998754221 2222222 679999999999994
No 262
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.49 E-value=8.5e-14 Score=111.09 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=80.9
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCC--C-C---------------CCCceeeEEEEEEEEECCeEEEEEEEeCC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS--N-Q---------------YKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 65 (156)
...+.++|+++|..++|||||+.+|+...-. . . ...+.........+.+.+..+.++++|||
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtP 95 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTP 95 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCC
Confidence 3456789999999999999999999743210 0 0 00111111111222334456889999999
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+.++.......++.+|++++|+|+......+....|.... .. +.|.++++||+|+...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~----~~----~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL----RE----RVKPVLFINKVDRLIK 154 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH----Hc----CCCeEEEEECchhhcc
Confidence 99998888888899999999999998764333222232211 11 5578999999998743
No 263
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.49 E-value=8.7e-13 Score=99.79 Aligned_cols=139 Identities=17% Similarity=0.299 Sum_probs=99.3
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..++.++|.++|+.++|||.+++.|+++.+.+....+....+....+...+..-.+.+-|.+-. ........- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3456799999999999999999999998887755566666666666666666667777777754 222221112 77999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhcccc
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKYS 154 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (156)
+.++||.+++.+|+.+...+...... ..+|+++|++|+|+.+.. +...-. .+-.|.+.+++
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~--Q~~~iq--pde~~~~~~i~ 559 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVP--QRYSIQ--PDEFCRQLGLP 559 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhh--hccCCC--hHHHHHhcCCC
Confidence 99999999999999887666544322 278999999999999873 222222 24467666654
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.6e-13 Score=100.31 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=91.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCC-----------------------------CCCCCCceeeEEEEEEEEECC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------------SNQYKATIGADFLTKEVQFED 54 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (156)
..++.++++++|...+|||||+-+|+-+-- ........+.+.......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 456779999999999999999999864310 011122223344444445555
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
..+.++|+|+||+.+|-.....-...+|+.++|+|+.+.+ .|. ....-+..+.+.+. -..+|++.||+|+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVavNKMD~ 157 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAVNKMDL 157 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEEEcccc
Confidence 5688999999999888777777788899999999999874 111 11222333333333 2258999999999
Q ss_pred CCCCceeeeeccccchhh
Q 031598 130 DGGNSRVVCFGEEGSSMV 147 (156)
Q Consensus 130 ~~~~~~~~~~~e~~~~~~ 147 (156)
.+- ++..++|......
T Consensus 158 v~w--de~rf~ei~~~v~ 173 (428)
T COG5256 158 VSW--DEERFEEIVSEVS 173 (428)
T ss_pred ccc--CHHHHHHHHHHHH
Confidence 985 5566666555443
No 265
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.5e-12 Score=92.59 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=67.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-------cccchhhhhee
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYR 79 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~ 79 (156)
.--+++++|.|++|||||++.|.+.+......+..+.+.....+.+++ .+++++|+||.- ..........+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 347899999999999999999999886655555555555566677766 789999999822 22345566789
Q ss_pred cccEEEEEEECCChhh
Q 031598 80 GADCCVLVYDVNSMKS 95 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~ 95 (156)
.||.+++|+|+..+..
T Consensus 140 ~ADlIiiVld~~~~~~ 155 (365)
T COG1163 140 NADLIIIVLDVFEDPH 155 (365)
T ss_pred cCCEEEEEEecCCChh
Confidence 9999999999997654
No 266
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=2.4e-13 Score=93.70 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=70.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhh----
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV---- 75 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~---- 75 (156)
++|+++|..|+||||++|.+++........ ...+..+........+ ..+.++||||-.+. .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 689999999999999999999887654332 2222333334445566 67899999992211 11111
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
....+.+++++|+...+.. ..-...++.+...+.... ...++||.|.+|...++
T Consensus 79 ~~~~g~ha~llVi~~~r~t--~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFT--EEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDD 132 (212)
T ss_dssp HTTT-ESEEEEEEETTB-S--HHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTT
T ss_pred hccCCCeEEEEEEecCcch--HHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccc
Confidence 1235689999999998432 112333444554444332 23689999999887763
No 267
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=4.6e-13 Score=99.38 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=94.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCC-----------------CCCCCCCceeeEEEEEEEEE-CCeEEEEEEEeCC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK-----------------FSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTA 65 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~ 65 (156)
...+..|+.++..-.-|||||..|++... ..+...-|...+.....+.. +++.+.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 44567899999999999999999997431 12333333333333333333 4577999999999
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
||.+|.......+..|.+.++|+|++..-.-+.+...+..+.. +.-++-|+||+||+..+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCC
Confidence 9999999999999999999999999998777777777777642 56789999999999884
No 268
>PRK12740 elongation factor G; Reviewed
Probab=99.44 E-value=8.1e-13 Score=104.85 Aligned_cols=109 Identities=21% Similarity=0.247 Sum_probs=75.0
Q ss_pred EcCCCCChhHHHHHHhcCCCC------------------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh
Q 031598 14 LGDSGVGKTSLMNQYVNKKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75 (156)
Q Consensus 14 ~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 75 (156)
+|..++|||||+++|+...-. ....+..+.......+... ++.+++|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 599999999999999643210 0001222222223334444 47899999999988877888
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++.+|++++|+|+++.........|. .+. .. +.|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~----~~---~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAE----KY---GVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH----Hc---CCCEEEEEECCCCCCC
Confidence 8899999999999999876555433322 221 11 6799999999999865
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=9.7e-13 Score=95.74 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=60.2
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
.+.+.+||++|+...+..|..++..++++++|+|.++-+ ....+.+.+..+...+......++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 467999999999999999999999999999999999741 1123334444444444544445899999999999
Q ss_pred CCCCCc
Q 031598 129 VDGGNS 134 (156)
Q Consensus 129 l~~~~~ 134 (156)
+..+..
T Consensus 240 ~f~~ki 245 (317)
T cd00066 240 LFEEKI 245 (317)
T ss_pred HHHHhh
Confidence 987643
No 270
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.1e-13 Score=91.53 Aligned_cols=122 Identities=18% Similarity=0.286 Sum_probs=83.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee---ccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD 82 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~ 82 (156)
+..-.|+++|+.+||||+|...|....+..+... .......+.+.+ -..+++|.||+...+.....+++ .+-
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccce
Confidence 3346799999999999999999987754322111 111122222233 34899999999999888888887 789
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
++++|+|...- ....++.+++-.+...... ....+|++++.||.|+.-..
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcC
Confidence 99999998763 3344455555555544321 23378999999999997654
No 271
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=5.6e-13 Score=100.32 Aligned_cols=122 Identities=25% Similarity=0.266 Sum_probs=93.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+++.-|.++|.-.-|||||+..|-+...........+....-..++.+.+ -.+++.||||+.-|..|...-....|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45677899999999999999999988877666666555555555665543 68999999999999999988888999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCcee
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRV 136 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 136 (156)
+|+.+.|....+.+ +.+. +.+.. +.|+++.+||+|.++.++..
T Consensus 230 LVVAadDGVmpQT~----EaIk-hAk~A---~VpiVvAinKiDkp~a~pek 272 (683)
T KOG1145|consen 230 LVVAADDGVMPQTL----EAIK-HAKSA---NVPIVVAINKIDKPGANPEK 272 (683)
T ss_pred EEEEccCCccHhHH----HHHH-HHHhc---CCCEEEEEeccCCCCCCHHH
Confidence 99999986544432 2222 11222 88999999999999875443
No 272
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.8e-12 Score=102.03 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=90.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC-----CCC-----------CCCceeeEEEEEEEEECCe-EEEEEEEeCCCc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-----SNQ-----------YKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ 67 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 67 (156)
..+.++|.++|+.++||||+..+++...- ... .....+.+......+.... .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45679999999999999999999873211 000 0111223333333333334 489999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.+|.......++.+|++++|+|+......+.-.-|++.... +.|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~--------~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY--------GVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc--------CCCeEEEEECccccccC
Confidence 99999999999999999999999997766665556665431 78999999999998764
No 273
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.39 E-value=1.8e-12 Score=93.08 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=97.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC---------------------------------CCCCCCceeeEEEEEEEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---------------------------------SNQYKATIGADFLTKEVQ 51 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 51 (156)
.++.+|++-+|.-.-||||||-||+...- ..+.....+.+..+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 45679999999999999999999986421 122233344555555543
Q ss_pred ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..+.+|.+-||||+++|......-.+.||+.++++|+...- .+...-+..+..++.. ..+++..||+||.+
T Consensus 83 --T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvd 153 (431)
T COG2895 83 --TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLGI-----RHVVVAVNKMDLVD 153 (431)
T ss_pred --cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhCC-----cEEEEEEeeecccc
Confidence 34468999999999999877777788999999999986532 3333334455555542 25889999999998
Q ss_pred CCceeeeeccccchhhhhhccc
Q 031598 132 GNSRVVCFGEEGSSMVCLQRKY 153 (156)
Q Consensus 132 ~~~~~~~~~e~~~~~~~~~~~~ 153 (156)
- .+..++++..++.....++
T Consensus 154 y--~e~~F~~I~~dy~~fa~~L 173 (431)
T COG2895 154 Y--SEEVFEAIVADYLAFAAQL 173 (431)
T ss_pred c--CHHHHHHHHHHHHHHHHHc
Confidence 7 5667777766655554443
No 274
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.5e-12 Score=97.97 Aligned_cols=121 Identities=24% Similarity=0.266 Sum_probs=87.1
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCcee---------------eEEE-----EEEEEECCeEEEEEE
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---------------ADFL-----TKEVQFEDRLFTLQI 61 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~i 61 (156)
+......+++.++|.-+.|||+|+..|..+..++...+... .... ...-..++..+.+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 45566789999999999999999999987655322111110 0000 111122566788999
Q ss_pred EeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
.||||+.++.....+.++.+|++++++|+.+..++..-+.....+ . . +.|+.+|+||+|+.
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q-~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----Q-N---RLPIVVVINKVDRL 262 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----h-c---cCcEEEEEehhHHH
Confidence 999999999999999999999999999999987766432222222 2 2 78999999999974
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.39 E-value=4.6e-13 Score=99.88 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=90.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc--------cc
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--------QS 72 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~ 72 (156)
||+.......++++|.|++|||||++.+...+....+.++.+...+...+.+.. .++++.||||.... +.
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHH
Confidence 456677789999999999999999999987776655555554555555554444 68999999993322 11
Q ss_pred hhhhhe-ecccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 73 LGVAFY-RGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 73 ~~~~~~-~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.....+ +--.+++|+.|.+. ..|.++....+..+..++. +.|+|+|+||+|+...
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRP 296 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCc
Confidence 111111 23467888889887 4567777778888888877 7899999999999876
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.38 E-value=1.3e-12 Score=96.79 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=88.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (156)
...+|+++..-.-|||||+..|+.+.- ...-....+.+...+...+...+++++|+||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 467999999999999999999986531 112233344566666666666779999999999999999
Q ss_pred hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.....++=.|++++++|+.+....+. +-....- +.. +.+-|+|+||+|.++..
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKA---l~~----gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKA---LAL----GLKPIVVINKIDRPDAR 136 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCch-hhhHHHH---HHc----CCCcEEEEeCCCCCCCC
Confidence 99999999999999999998543332 1111111 111 67789999999999883
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.38 E-value=3.7e-12 Score=93.46 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=58.5
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
..+.+||++|+...+..|..++..++++++|+|+++-+ ....+.+....+...+......++|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 56899999999999999999999999999999999732 11223333344444444444458999999999999
Q ss_pred CCCC
Q 031598 130 DGGN 133 (156)
Q Consensus 130 ~~~~ 133 (156)
..+.
T Consensus 264 ~~~K 267 (342)
T smart00275 264 FEEK 267 (342)
T ss_pred HHHH
Confidence 8764
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.2e-12 Score=95.04 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=91.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
+..=|+++|.-.-|||||+..+-..+.........+.+..-..+..+. ..-.+.++|||||+-|..+...-..-+|.++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 445689999999999999999998887766565555555555555431 2247999999999999999988889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceee
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVV 137 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 137 (156)
+|+++++.-..+.+. .+... +.. ++|+++..||+|.++.+...+
T Consensus 84 LVVa~dDGv~pQTiE----AI~ha-k~a---~vP~iVAiNKiDk~~~np~~v 127 (509)
T COG0532 84 LVVAADDGVMPQTIE----AINHA-KAA---GVPIVVAINKIDKPEANPDKV 127 (509)
T ss_pred EEEEccCCcchhHHH----HHHHH-HHC---CCCEEEEEecccCCCCCHHHH
Confidence 999999965444332 22111 212 899999999999997653333
No 279
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-12 Score=96.10 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=94.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc--CCC--------------C------CCCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN--KKF--------------S------NQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (156)
.+...++|+..|.+|||||-..|+- ... . -......+.+ +..++++..++.++|.|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVt--sSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVT--SSVMQFDYADCLVNLLD 87 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEE--eeEEEeccCCeEEeccC
Confidence 4557889999999999999998751 100 0 0112233333 44444455558899999
Q ss_pred CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC-ceeeeeccc
Q 031598 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN-SRVVCFGEE 142 (156)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~e~ 142 (156)
|||+++|..-....+..+|..++|+|+...---+. ..+.+.|+.. ++|++-++||.|....+ .+....-|.
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR---~iPI~TFiNKlDR~~rdP~ELLdEiE~ 159 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLR---DIPIFTFINKLDREGRDPLELLDEIEE 159 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhc---CCceEEEeeccccccCChHHHHHHHHH
Confidence 99999999998999999999999999997643222 2344444444 89999999999998864 222233344
Q ss_pred cchhhhhhccccc
Q 031598 143 GSSMVCLQRKYSL 155 (156)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (156)
+..+.|..-.||+
T Consensus 160 ~L~i~~~PitWPI 172 (528)
T COG4108 160 ELGIQCAPITWPI 172 (528)
T ss_pred HhCcceecccccc
Confidence 4455555555553
No 280
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.35 E-value=1.9e-11 Score=81.09 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=41.9
Q ss_pred EEEEeCCCccc----ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 59 LQIWDTAGQER----FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 59 ~~i~D~~g~~~----~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
+.|+||||-.. ....+..+++.+|++++|.+.+....-.....+.+.. ... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~----~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML----DPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH----TTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh----cCC---CCeEEEEEcCC
Confidence 89999999432 2355667789999999999999865544443333333 222 33589999985
No 281
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.34 E-value=9.8e-12 Score=89.07 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=75.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhheeccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGAD 82 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~ 82 (156)
-|.++|.|++|||||++.+.+.+..--..+..+....-..+.. ...-.|.+-|.||--+- ....-..++.|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 4678999999999999999988754222222222222233333 22246999999992221 222334567899
Q ss_pred EEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.|+|++..+. .++......++..+... ..+.|.++|+||+|+...
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~--L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK--LAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH--hccCceEEEEeccCCCcC
Confidence 9999999997542 34444444444433221 226799999999996554
No 282
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.4e-12 Score=94.46 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=79.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-----ccch----hh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-----FQSL----GV 75 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~----~~ 75 (156)
+..++|+++|+|++|||||+|.|.+.+.. -.+.+..+.+.....+++++ +.+.+.||.|..+ .+.+ ..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 34589999999999999999999988743 22234444455555566666 7899999999554 1111 12
Q ss_pred hheecccEEEEEEECCC--hhhHHHHHHHHHHHHHhcCC--CCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNS--MKSFDNLNNWREEFLIQASP--SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+..+|++++|+|+.. -++-..+.+.+.....-+.. ......|++++.||.|+..+
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 23567999999999943 32222233333322111100 11124689999999999876
No 283
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.34 E-value=2.6e-12 Score=94.29 Aligned_cols=113 Identities=16% Similarity=0.244 Sum_probs=56.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCcee---eEEEEEEEEECCeEEEEEEEeCCCcccccchhhhh-----
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----- 77 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----- 77 (156)
...++|+|+|.+|+|||||||.|.+-...+......| ++.....+..+.. -.+.+||.||..-.......|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4568999999999999999999976443222111111 1111122222221 258999999954433333333
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
+...|.++++.+..-... . ......+.+. +.|+++|-||+|.
T Consensus 112 ~~~yD~fiii~s~rf~~n--d-v~La~~i~~~-------gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEN--D-VQLAKEIQRM-------GKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEESSS--HH--H-HHHHHHHHHT-------T-EEEEEE--HHH
T ss_pred ccccCEEEEEeCCCCchh--h-HHHHHHHHHc-------CCcEEEEEecccc
Confidence 356798887765432221 1 1223333322 6799999999996
No 284
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.33 E-value=7.3e-12 Score=78.84 Aligned_cols=91 Identities=29% Similarity=0.401 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
+|++++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997666543222 2211 333445567788999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|+..+..+++.+ |...+....+ ...|.++++||.|+.++
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k----~dl~~~~~~nk~dl~~~ 92 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNK----SDLPILVGGNRDVLEEE 92 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCC----CCCcEEEEeechhhHhh
Confidence 999999988765 6655543322 25789999999999654
No 285
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.31 E-value=8.7e-11 Score=84.05 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=67.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCC----------CCceeeEEEEEEEEECCeEEEEEEEeCCCccc-cc-----
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQ----- 71 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~----- 71 (156)
.++|+|+|.+|+||||||+.|++....... ..+...........-++..+.++++||||--. ..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987543321 12222233333444467778999999999110 00
Q ss_pred chhhhh---------------------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 72 SLGVAF---------------------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 72 ~~~~~~---------------------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
.....+ =...|+++|.++.+...--..-...++.+ .. .+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L---s~-----~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL---SK-----RVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH---TT-----TSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh---cc-----cccEEeEEeccccc
Confidence 000000 12469999999987643211112223333 22 67899999999997
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 156 t~ 157 (281)
T PF00735_consen 156 TP 157 (281)
T ss_dssp -H
T ss_pred CH
Confidence 64
No 286
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=5.7e-11 Score=92.21 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=74.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------c---hhhh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S---LGVA 76 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~---~~~~ 76 (156)
.++|+++|.+|+||||++|++++.+....... ..++..........+ ..+.++||||-.... . ....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 47899999999999999999998864332221 111222122222333 679999999954321 1 1112
Q ss_pred hee--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYR--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++. .+|++|+|...........-..+++.+...+...- ...+|||.|+.|....
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 333 47999999877643322122244555555555433 3468999999999864
No 287
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.9e-12 Score=88.08 Aligned_cols=138 Identities=21% Similarity=0.341 Sum_probs=87.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-----chhhhheecc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----SLGVAFYRGA 81 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~ 81 (156)
..||+++|.+|+||||+=..++.+.. .+...++.+.+.......+-+ ...+++||++|++.+- ......++..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 46899999999999997655553321 122233333343333333322 2689999999988442 2334567889
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhh
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVC 148 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~ 148 (156)
++++++||++..+-...+..+...+...+ .+.+...+.+..+|.|+...+.++...++.......
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll--~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~ 147 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALL--QNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRR 147 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHH--hcCCcceEEEEEeechhcccchHHHHHHHHHHHHHH
Confidence 99999999998765444443333222222 122366789999999999987777666655544433
No 288
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=2.4e-11 Score=84.81 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=43.1
Q ss_pred EEEEEEeCCCccc-------------ccchhhhhee-cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598 57 FTLQIWDTAGQER-------------FQSLGVAFYR-GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVV 122 (156)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 122 (156)
..++++||||-.. ...+...+++ ..+.+++|+|+...-.-.......+.+. .. +.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~---~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQ---GERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----Hc---CCcEEE
Confidence 4689999999531 1234445666 4569999998865322122222222222 11 679999
Q ss_pred EEecCCCCCC
Q 031598 123 LGNKIDVDGG 132 (156)
Q Consensus 123 v~nK~Dl~~~ 132 (156)
|+||+|..++
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999999876
No 289
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.30 E-value=4.3e-13 Score=93.42 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=44.9
Q ss_pred EEEEEEeCCCccccc------chhhhheecc--cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 57 FTLQIWDTAGQERFQ------SLGVAFYRGA--DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~------~~~~~~~~~~--~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
+...++|||||-+.. .+....+... -++++++|..+..+. ..|+.+++..+.......+|+|+|.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p---~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSP---TTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCc---hhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 458899999976441 2222223333 466677776554332 23444444444333344899999999999
Q ss_pred CCCCC
Q 031598 129 VDGGN 133 (156)
Q Consensus 129 l~~~~ 133 (156)
+.+.+
T Consensus 193 v~d~~ 197 (366)
T KOG1532|consen 193 VSDSE 197 (366)
T ss_pred ccccH
Confidence 99863
No 290
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.29 E-value=1.7e-11 Score=92.87 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEE---------------EECC------------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEV---------------QFED------------ 54 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~------------ 54 (156)
++..++|.++|.-..|||||+.+|.+.... .+.....+.+...... .++.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 456799999999999999999999865331 1111111110000000 0000
Q ss_pred ----eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 55 ----RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 55 ----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
-...+.++|+||++.|.......+..+|++++|+|+.++ ...+.. +.+ .+...+. -.|+++|+||+|+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~lg-----i~~iIVvlNKiDl 183 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIMK-----LKHIIILQNKIDL 183 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHcC-----CCcEEEEEecccc
Confidence 023689999999998877777778899999999999974 222221 111 2222222 2368999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
.+.
T Consensus 184 v~~ 186 (460)
T PTZ00327 184 VKE 186 (460)
T ss_pred cCH
Confidence 864
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=3.9e-11 Score=83.44 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=67.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.....|+++|.+|+|||||++.+.+...........+. .. ... ....++.++||||.. ......++.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~--~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVT--GKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEe--cCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 34577899999999999999999865211111111111 10 111 234578999999864 22234467899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~ 132 (156)
+++|.+....... ...+..+ ... +.|. ++|+||+|+.++
T Consensus 109 lviDa~~~~~~~~-~~i~~~l----~~~---g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNIL----QVH---GFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHH----HHc---CCCeEEEEEeccccCCc
Confidence 9999986543222 1222222 111 4574 559999999754
No 292
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.23 E-value=4.7e-11 Score=86.75 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=69.5
Q ss_pred EEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCCh-------hhHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 031598 49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM-------KSFDNLNNWREEFLIQASPSDPDNFPFV 121 (156)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~i 121 (156)
.+.+++ ..+.++|++||..-+..|..++..++++++|++.++= +....+.+.+..+...+....-.++++|
T Consensus 189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII 266 (354)
T ss_pred EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence 344444 7789999999999999999999999999999999872 2234455556666677777767789999
Q ss_pred EEEecCCCCCCCceeeeec
Q 031598 122 VLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 122 lv~nK~Dl~~~~~~~~~~~ 140 (156)
++.||.||-.+.....+..
T Consensus 267 LFLNK~DLFeEKi~~~~~~ 285 (354)
T KOG0082|consen 267 LFLNKKDLFEEKIKKVPLT 285 (354)
T ss_pred EEeecHHHHHHHhccCchh
Confidence 9999999988755444433
No 293
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.21 E-value=1.9e-10 Score=83.58 Aligned_cols=82 Identities=21% Similarity=0.349 Sum_probs=52.9
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCC------CCCCceeeEEEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKE---------------VQFED-RLFTLQIWDTAGQ- 67 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 67 (156)
|+++|.+++|||||+++|.+..... +..+..+....... ...++ ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 11222222211100 00112 3367999999996
Q ss_pred ---ccccchhhh---heecccEEEEEEECCC
Q 031598 68 ---ERFQSLGVA---FYRGADCCVLVYDVNS 92 (156)
Q Consensus 68 ---~~~~~~~~~---~~~~~~~~l~v~d~~~ 92 (156)
.....+... .++.+|++++|+|+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 333333333 4789999999999973
No 294
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=4e-10 Score=84.19 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG 66 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 66 (156)
++|+++|.+++|||||+++|.+........+..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987654322222222222221111 1 1235789999999
Q ss_pred cc----cccchhhhh---eecccEEEEEEECC
Q 031598 67 QE----RFQSLGVAF---YRGADCCVLVYDVN 91 (156)
Q Consensus 67 ~~----~~~~~~~~~---~~~~~~~l~v~d~~ 91 (156)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 32 223333334 78999999999997
No 295
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=5.9e-10 Score=86.46 Aligned_cols=69 Identities=28% Similarity=0.336 Sum_probs=45.1
Q ss_pred EEEEEEeCCCcccc-----cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 57 FTLQIWDTAGQERF-----QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 57 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.++.++||||.... .......+..+|++++|+|.....+... ....+.+... . .+.|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~----K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-G----QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-C----CCCCEEEEEEcccCCC
Confidence 46889999995432 2233446889999999999987543332 2223333221 1 1359999999999965
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=99.16 E-value=3.4e-10 Score=84.00 Aligned_cols=87 Identities=23% Similarity=0.186 Sum_probs=58.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER 69 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 69 (156)
+..-++|.++|.|++|||||+++|.+.+......|..+.+.....+...+. ..++.++|+||-..
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345689999999999999999999887654333344433344444443322 23589999999332
Q ss_pred -------ccchhhhheecccEEEEEEECC
Q 031598 70 -------FQSLGVAFYRGADCCVLVYDVN 91 (156)
Q Consensus 70 -------~~~~~~~~~~~~~~~l~v~d~~ 91 (156)
........++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222334567899999999984
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.16 E-value=3.3e-10 Score=92.69 Aligned_cols=102 Identities=29% Similarity=0.343 Sum_probs=71.1
Q ss_pred CChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe----------------EEEEEEEeCCCcccccchhhhheeccc
Q 031598 19 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 19 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
++||||+.++.+.+.........+.+.....+..+.. ...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 4599999999988876655555444333333333210 013899999999999888777888899
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 83 CCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 83 ~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++++|+|+++ +.++..+. .+. . . ++|+++|+||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk-~---~---~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILR-Q---Y---KTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHH-H---c---CCCEEEEEECCCCcc
Confidence 9999999987 33333332 111 1 1 679999999999964
No 298
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.15 E-value=4.3e-11 Score=83.72 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=37.8
Q ss_pred EEEEEeCCCcccccchhhhhe--------ecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
.+.++|||||.++-..+...- ...-++++++|+....+... +..++..+.-.++. +.|.+.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 589999999988765555443 34558889999875433222 22222222222222 789999999999
Q ss_pred CCCC
Q 031598 129 VDGG 132 (156)
Q Consensus 129 l~~~ 132 (156)
+.++
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9974
No 299
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.9e-10 Score=81.37 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=77.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeE-------------------------------
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRL------------------------------- 56 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------------- 56 (156)
.=|+++|+-+.||||||+.|+.++++. ...+..+++++...+..+.++
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 458999999999999999999888763 224444456666665432221
Q ss_pred --------EEEEEEeCCCccc-----------ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598 57 --------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDN 117 (156)
Q Consensus 57 --------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (156)
-.++++||||.-. |.....-+...||.++++||....+--.+....+..+ +.. .
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~---E 211 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGH---E 211 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCC---c
Confidence 1289999999332 2233334567899999999988755333333334444 222 2
Q ss_pred CcEEEEEecCCCCCC
Q 031598 118 FPFVVLGNKIDVDGG 132 (156)
Q Consensus 118 ~p~ilv~nK~Dl~~~ 132 (156)
-.+-+|.||+|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 257889999999876
No 300
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.12 E-value=5e-10 Score=80.10 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=69.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEE--ECCeEEEEEEEeCCCcccccchhhhheecc----
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQ--FEDRLFTLQIWDTAGQERFQSLGVAFYRGA---- 81 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~---- 81 (156)
--+|+|+|..++||||||.+|.+.+. ..+..+..|.+..++ ..+...++.+|-..|...........+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 36899999999999999999998772 233334444444433 233446899999999877777766666543
Q ss_pred cEEEEEEECCChh-hHHHHHHHHHHHHHh
Q 031598 82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQ 109 (156)
Q Consensus 82 ~~~l~v~d~~~~~-~~~~~~~~~~~~~~~ 109 (156)
-.++++.|+++|. -++.+..|..-++++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 4788889999994 455566666655543
No 301
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=4.3e-10 Score=82.63 Aligned_cols=83 Identities=24% Similarity=0.143 Sum_probs=55.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEeCCCcccc---
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQERF--- 70 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~--- 70 (156)
++|.++|.|++|||||.+++.+.+......+..+.+.....+.+.+.. ..+.++|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877432222333333333333333321 25899999993321
Q ss_pred ----cchhhhheecccEEEEEEECC
Q 031598 71 ----QSLGVAFYRGADCCVLVYDVN 91 (156)
Q Consensus 71 ----~~~~~~~~~~~~~~l~v~d~~ 91 (156)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122333467899999999985
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.08 E-value=3.4e-10 Score=80.53 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=53.9
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc------
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------ 69 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~------ 69 (156)
|+++|.|++|||||.+++.+.+......+..+.+.....+.+.+. ...+.++|+||-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999988764332333333344444444432 13599999999332
Q ss_pred -ccchhhhheecccEEEEEEECC
Q 031598 70 -FQSLGVAFYRGADCCVLVYDVN 91 (156)
Q Consensus 70 -~~~~~~~~~~~~~~~l~v~d~~ 91 (156)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1122233457899999999974
No 303
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=8.7e-10 Score=86.05 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=89.9
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCC--------------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKF--------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
+......+++++..-.-|||||+..|...+- .+....+.+.+-....+.+-.+++.++++|+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3455678999999999999999999874421 12334444555555555555567899999999999
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+|........+-+|+++.++|+...---+...-.++.+.. +..+++|+||+|..
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--------~~~~~lvinkidrl 137 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--------GLKPILVINKIDRL 137 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--------cCceEEEEehhhhH
Confidence 9999999999999999999999986554554444444432 56789999999953
No 304
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5.5e-10 Score=84.92 Aligned_cols=131 Identities=22% Similarity=0.267 Sum_probs=88.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (156)
+...++++++|...+|||||+-+++..- ..++.....+.+ .....++
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~--v~~~~fe 251 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMD--VKTTWFE 251 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEE--eeeEEEe
Confidence 3456999999999999999998876320 012333333333 4444455
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
.....++|.|.||+..|-.....-...+|+.++|+|++... .|+. ..+.+..+.+.+. -..+++++||+|
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-----i~qlivaiNKmD 326 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-----ISQLIVAINKMD 326 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-----cceEEEEeeccc
Confidence 66678999999999888877777778899999999999742 2321 1223334444444 235899999999
Q ss_pred CCCCCceeeeeccccc
Q 031598 129 VDGGNSRVVCFGEEGS 144 (156)
Q Consensus 129 l~~~~~~~~~~~e~~~ 144 (156)
+.+= .+..+++++.
T Consensus 327 ~V~W--sq~RF~eIk~ 340 (603)
T KOG0458|consen 327 LVSW--SQDRFEEIKN 340 (603)
T ss_pred ccCc--cHHHHHHHHH
Confidence 9986 3444554443
No 305
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.03 E-value=5.7e-09 Score=75.78 Aligned_cols=118 Identities=15% Similarity=0.254 Sum_probs=72.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCC----------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (156)
-.++|+++|++|+|||||+|.|++...... ..++.........+.-++-..+++++||||--+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 358999999999999999999997743322 123333333344444466678999999999110
Q ss_pred c-------cchhhhhe--------------ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 70 F-------QSLGVAFY--------------RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 70 ~-------~~~~~~~~--------------~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
+ ......++ ..+|+++|.+..+...- ..+. ...|.+... .+.+|-|+.|+|
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l-~~~D--Ie~Mk~ls~-----~vNlIPVI~KaD 173 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGL-KPLD--IEAMKRLSK-----RVNLIPVIAKAD 173 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCC-CHHH--HHHHHHHhc-----ccCeeeeeeccc
Confidence 0 11111111 23689999988665321 2211 222323323 667999999999
Q ss_pred CCCC
Q 031598 129 VDGG 132 (156)
Q Consensus 129 l~~~ 132 (156)
....
T Consensus 174 ~lT~ 177 (373)
T COG5019 174 TLTD 177 (373)
T ss_pred cCCH
Confidence 9765
No 306
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.00 E-value=4.9e-09 Score=79.67 Aligned_cols=94 Identities=24% Similarity=0.400 Sum_probs=64.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC--CeEEEEEEEeCCCcccccchhhhheecc---
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGA--- 81 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~--- 81 (156)
...+|+|+|..++||||||.+|.+.+ .+.++.+..|....+.-. +...++++|-..|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34789999999999999999997654 234455555544443322 2235789999998777776666666432
Q ss_pred -cEEEEEEECCChhhHH-HHHHHH
Q 031598 82 -DCCVLVYDVNSMKSFD-NLNNWR 103 (156)
Q Consensus 82 -~~~l~v~d~~~~~~~~-~~~~~~ 103 (156)
-.++||+|.+.|..+- .+..|.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~ 124 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWL 124 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHH
Confidence 4889999999986543 244433
No 307
>PRK13768 GTPase; Provisional
Probab=98.98 E-value=3.6e-09 Score=74.85 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=43.0
Q ss_pred EEEEEeCCCcccc---cchhhhhe---ec--ccEEEEEEECCChhhHHHHH--HHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 58 TLQIWDTAGQERF---QSLGVAFY---RG--ADCCVLVYDVNSMKSFDNLN--NWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 58 ~~~i~D~~g~~~~---~~~~~~~~---~~--~~~~l~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
.+.+||+||+.+. ...+..++ .. .+++++++|+.......... .|....... .. +.|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~----~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RL----GLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-Hc----CCCEEEEEEhH
Confidence 5899999997653 22332222 22 78999999997644333221 122111111 11 67999999999
Q ss_pred CCCCC
Q 031598 128 DVDGG 132 (156)
Q Consensus 128 Dl~~~ 132 (156)
|+.+.
T Consensus 173 D~~~~ 177 (253)
T PRK13768 173 DLLSE 177 (253)
T ss_pred hhcCc
Confidence 99876
No 308
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.98 E-value=5.4e-10 Score=69.24 Aligned_cols=100 Identities=23% Similarity=0.222 Sum_probs=65.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh----hhheecccEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG----VAFYRGADCC 84 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~ 84 (156)
-|++++|..|||||||.+.+.+...-. ..+ .-+++++.. .+||||.-.-...| ......+|++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--kKT-------QAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--KKT-------QAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh--ccc-------ceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 478999999999999999999876321 111 122333321 45999943333333 3445778999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|-.++++++.-. . .+.. .-..|+|=|.||.|+.++
T Consensus 69 ~~v~~and~~s~f~-p----~f~~------~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 69 IYVHAANDPESRFP-P----GFLD------IGVKKVIGVVTKADLAED 105 (148)
T ss_pred eeeecccCccccCC-c----cccc------ccccceEEEEecccccch
Confidence 99999998864221 1 1111 115579999999999964
No 309
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=9.7e-09 Score=74.97 Aligned_cols=116 Identities=17% Similarity=0.301 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCC---------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-------cc-
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RF- 70 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~- 70 (156)
.++++++|.+|.|||||||.|+....... ...+...........-++-..+++++||||-- .+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999887643321 11222223333333345666799999999910 01
Q ss_pred ------cchhhhhe-------------ecccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 71 ------QSLGVAFY-------------RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 71 ------~~~~~~~~-------------~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
......++ ..+|+++|.+......- ..+ ..+++.+ .. .+++|-|+.|+|..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL-~p~Di~~Mk~l---~~-----~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGL-KPLDIEFMKKL---SK-----KVNLIPVIAKADTL 171 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCC-cHhhHHHHHHH---hc-----cccccceeeccccC
Confidence 01111111 25789999988765421 111 2223332 22 67889999999998
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 75
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.95 E-value=1.3e-08 Score=75.63 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=22.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+-|.|+|+.++||||||++|.+.
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhh
Confidence 3578999999999999999999987
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=7e-09 Score=74.96 Aligned_cols=127 Identities=21% Similarity=0.134 Sum_probs=77.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCCceeeEEEEEEEE-------ECCeEEEEEEEeCCCccccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQ-------FEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~ 71 (156)
+..+++.++|.-.||||||.+++..-. .++......+.+..-..+. ..++..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345999999999999999999986321 1221122222222222221 13455789999999997665
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
.....-..-.|..++|+|+...-.-+..+- .-+-+.+ -...++|+||.|+..+.+|+...+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEc--Liig~~~------c~klvvvinkid~lpE~qr~ski~ 145 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAEC--LIIGELL------CKKLVVVINKIDVLPENQRASKIE 145 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchh--hhhhhhh------ccceEEEEeccccccchhhhhHHH
Confidence 555555566799999999987543232211 1111222 235788999999887754544333
No 312
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=3.5e-09 Score=68.46 Aligned_cols=54 Identities=30% Similarity=0.378 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
+++++|.+|+|||||+|++.+...... ....+.+.....+..++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 799999999999999999998775422 22223333344444443 5789999995
No 313
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.91 E-value=5.3e-09 Score=69.81 Aligned_cols=55 Identities=29% Similarity=0.436 Sum_probs=39.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
.++++++|.+++|||||+|++.+...... .+..+.+.....+..+. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 47999999999999999999998765332 33344444444444332 588999998
No 314
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.5e-08 Score=69.81 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=66.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCC---------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc----------
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------- 68 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------- 68 (156)
.++|+|+|.+|.|||||+++++..+..+ ....+.........+.-++-..+++++||||--
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 3899999999999999999998654322 111222222222333345666889999999911
Q ss_pred --------cccchhhh--------he--ecccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 69 --------RFQSLGVA--------FY--RGADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 69 --------~~~~~~~~--------~~--~~~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
++...... .+ ..++.+++.+..+... +..+ .++++.+.+ -..++-|+.|+|-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~--------vvNvvPVIakaDt 196 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTE--------VVNVVPVIAKADT 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhh--------hheeeeeEeeccc
Confidence 11111111 11 1357777777666432 2222 234444432 3468888999997
Q ss_pred CC
Q 031598 130 DG 131 (156)
Q Consensus 130 ~~ 131 (156)
.-
T Consensus 197 lT 198 (336)
T KOG1547|consen 197 LT 198 (336)
T ss_pred cc
Confidence 53
No 315
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=4.7e-08 Score=67.95 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=70.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhhee
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR 79 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 79 (156)
..-+|+++|-|++|||||+..+...+...-.....+.++....+++++ ..+++.|.||.-+- .....+..+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 347999999999999999999987664433334444566667777777 67999999993322 344455678
Q ss_pred cccEEEEEEECCChhhHHH-HHHHHHHH
Q 031598 80 GADCCVLVYDVNSMKSFDN-LNNWREEF 106 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~-~~~~~~~~ 106 (156)
.+|.+++|.|+..++.-.. +...++.+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAV 166 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHh
Confidence 8999999999998765333 34444444
No 316
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=6.4e-09 Score=81.36 Aligned_cols=117 Identities=23% Similarity=0.183 Sum_probs=78.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------------CeEEEEEEEeCCCcccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~ 70 (156)
+..=|+|+|.-.+|||-|+..+.+.++......+.+.......+... -.-..+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34568999999999999999998876654333332211111111110 01124789999999999
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..........||.+|+|+|+...---+.+. .+..++ .. ++|+|+.+||+|..=
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR----~r---ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLR----MR---KTPFIVALNKIDRLY 606 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhH-HHHHHH----hc---CCCeEEeehhhhhhc
Confidence 999999999999999999998642222221 122221 11 889999999999853
No 317
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=7.2e-09 Score=71.49 Aligned_cols=121 Identities=18% Similarity=0.261 Sum_probs=76.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---hhhhheecccEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADCCV 85 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~l 85 (156)
.+|+++|...|||||+..-.+ .+..+...-....+.....-++.+.-+.|.+||.||+..+-. -....++++.+++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVF-hkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVF-HKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheee-eccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 559999999999999554444 443333222222221111122333446899999999876632 2334568999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+|+|+.+.- .+.+..+...+.+.++- .+++.+-++++|+|-..++
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykv--Np~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKV--NPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeec--CCCceEEEEEEeccCCchh
Confidence 999988643 34455555555444432 3477888999999988763
No 318
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.88 E-value=8.6e-09 Score=67.80 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=37.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
...+|+++|.+|+|||||+|++.+...... .+..+.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKV-APIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceee-CCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 357899999999999999999998664322 23333333333333322 367999998
No 319
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.5e-09 Score=80.07 Aligned_cols=119 Identities=20% Similarity=0.266 Sum_probs=92.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC--------CCC--------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
.+..+|.++..-.+||||.-.+++... ... ......+.+..+..+.++.++++++++||||+.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 446889999999999999988876321 000 0012334567777788899999999999999999
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|......+++.-|+++.|||.+-...-+.+.-|++. ...++|-+.++||+|....
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence 999999999999999999999987666666666653 2238899999999998765
No 320
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.84 E-value=8.2e-09 Score=73.92 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhh------hh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGV------AF 77 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~------~~ 77 (156)
.+..-|.++|..+|||||||+.|..........-..+-+......+.+++. .+.+.||.|--. ...... ..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 445678999999999999999999766554444444444444444444443 567889999211 111111 12
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+|.++.|.|++.|..-+.......-+...--........++=|-||.|....
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 3568999999999999764433333333322211112223446778899998765
No 321
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=2.1e-08 Score=66.85 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=40.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
..++++++|.+++|||||++++.+...... ....+.+.....+.++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 347899999999999999999998765322 3333344444444443 35789999994
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=2e-08 Score=68.03 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-------CCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
.+++++|.+|+|||||+|+|.+..... ......+++........+. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 579999999999999999999754311 1122233444444454433 478999998
No 323
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=3.6e-08 Score=70.65 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=40.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
+.++++++|.+++|||||+|++.+...... ....+.+.....+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 458899999999999999999998764332 22333444444444432 4789999996
No 324
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=5.4e-08 Score=70.13 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=41.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
...++++++|.+++||||++|++.+.+.... .+..+.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3458999999999999999999998765332 33334444444444333 57899999954
No 325
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=6.5e-08 Score=71.37 Aligned_cols=84 Identities=21% Similarity=0.056 Sum_probs=57.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--- 69 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 69 (156)
+++.++|.|++|||||.+.+.+... .....|..+.......+.+++. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998875 3222233322333333444332 23688999999332
Q ss_pred ----ccchhhhheecccEEEEEEECCC
Q 031598 70 ----FQSLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 70 ----~~~~~~~~~~~~~~~l~v~d~~~ 92 (156)
........++.+|+++.|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 33345556789999999999853
No 326
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=4.5e-08 Score=75.02 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=71.7
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
....+++=++|+|++|+||||||..|..+-....-. ..-+.+ -..+...+++++.+|.. ..++ ....+-+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp~D--l~~m-iDvaKIa 134 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECPSD--LHQM-IDVAKIA 134 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeChHH--HHHH-HhHHHhh
Confidence 344556778899999999999999987553221111 111111 12456678999999942 3333 3345678
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
|.+++++|.+-.-..+.+ +++.-+ ... +.| ++-|+|+.|+...
T Consensus 135 DLVlLlIdgnfGfEMETm-EFLnil----~~H---GmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM-EFLNIL----ISH---GMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred heeEEEeccccCceehHH-HHHHHH----hhc---CCCceEEEEeecccccC
Confidence 999999999876544443 222222 222 334 7789999999875
No 327
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.72 E-value=6.3e-08 Score=63.57 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=38.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
...+++++|.+++||||+++++.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3578899999999999999999976532 2344444443333222222 688999998
No 328
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=72.68 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=75.5
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCC------------------------------------------------
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN------------------------------------------------ 35 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~------------------------------------------------ 35 (156)
..+...+|+|+|+..+||||.+..+...+..+
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 34556899999999999999999886543210
Q ss_pred --------CCCCceeeEEEEEEEEECCeE-EEEEEEeCCC-------------cccccchhhhheecccEEEEEEECCCh
Q 031598 36 --------QYKATIGADFLTKEVQFEDRL-FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNSM 93 (156)
Q Consensus 36 --------~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g-------------~~~~~~~~~~~~~~~~~~l~v~d~~~~ 93 (156)
....+ ....+..+++++.+ -+..++|.|| -+....+..+++.+.+++++|+---.-
T Consensus 384 E~RMr~sVr~GkT--VSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV 461 (980)
T KOG0447|consen 384 ELRMRKNVKEGCT--VSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV 461 (980)
T ss_pred HHHHHhcccCCcc--cccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc
Confidence 00111 11112222333322 3688999999 233456777889999999999854433
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 94 KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+. -+.....+...+. +.+...|+|.||+|+.++
T Consensus 462 DA---ERSnVTDLVsq~D---P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 462 DA---ERSIVTDLVSQMD---PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred ch---hhhhHHHHHHhcC---CCCCeeEEEEeecchhhh
Confidence 22 2222223333333 337789999999999876
No 329
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.70 E-value=1.2e-07 Score=79.79 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=67.1
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhh
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA 76 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 76 (156)
.+|+|++|+||||+|..- +.+++-... ...+.+. ...+-+.+ .-.++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999887 333322110 0111111 11111222 45689999922 22344665
Q ss_pred he---------ecccEEEEEEECCChhh-----H----HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 77 FY---------RGADCCVLVYDVNSMKS-----F----DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 77 ~~---------~~~~~~l~v~d~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
++ +..+++|+++|+.+.-. . ..++..++++...+.. ..||.+|.||+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhh
Confidence 55 34799999999987321 1 2234445555555554 89999999999987
No 330
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.67 E-value=6.9e-08 Score=70.57 Aligned_cols=61 Identities=23% Similarity=0.360 Sum_probs=45.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
.+..++.|+|-+++||||+||+|.+.... ...+..|.+.....+.... .+.++||||....
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~ 190 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPP 190 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCcCCC
Confidence 34578999999999999999999988753 2344446666566665555 3889999995433
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.5e-08 Score=70.64 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=80.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC----------CC----CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK----------KF----SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
.++..||..+|.-.-|||||...+... .+ ........+.+.......+.......--+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 355799999999999999998776421 00 0112233445555666666555556777899999988
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGGN 133 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 133 (156)
-.....-....|+.++|+.+.+....+.-. +-.+.+.. +.| ++++.||+|+.++.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrE--HiLlarqv------Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV------GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchh--hhhhhhhc------CCcEEEEEEecccccCcH
Confidence 766666667789999999999854333211 11121222 555 67888999999863
No 332
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.65 E-value=2.6e-08 Score=65.41 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
-.++++|++|+|||||||.|.+.... ........++.....+..++. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 46799999999999999999976321 111222223333444445442 4678999965443
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.65 E-value=1.8e-07 Score=68.48 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=40.0
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+.++||+|..+.... ....+|.++++.+....+..+.... .+.. ..-++|+||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E---------~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME---------LADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh---------hhheEEeehhcccch
Confidence 467899999996643333 3566999999976454544443321 1221 123899999999865
No 334
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.62 E-value=1.3e-07 Score=62.00 Aligned_cols=57 Identities=26% Similarity=0.408 Sum_probs=37.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
....+++++|.+++|||||+|++.+...... ....+++........+ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~-~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKV-GNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccc-cCCCCcccceEEEEec---CCEEEEECCC
Confidence 3458899999999999999999998653221 1111222222233332 3588999998
No 335
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.62 E-value=2.2e-07 Score=67.39 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+.|+||+|..... ......+|.++++-..... .++......+. ..|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccch
Confidence 4678999999954222 2245567877777443322 33332222221 5678999999999865
No 336
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3e-07 Score=67.28 Aligned_cols=85 Identities=21% Similarity=0.128 Sum_probs=59.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----------------CeEEEEEEEeCCC-----
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAG----- 66 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g----- 66 (156)
.+++.++|.|++|||||.|.+.......-..|..+.+......... -....+.++|..|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999776432223333333333332221 1235689999988
Q ss_pred --cccccchhhhheecccEEEEEEECCC
Q 031598 67 --QERFQSLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 67 --~~~~~~~~~~~~~~~~~~l~v~d~~~ 92 (156)
.+...+..-..++.+|+++.|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 44556666677799999999999983
No 337
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=2.8e-07 Score=66.51 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=64.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC---------------eEEEEEEEeCCC---
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG--- 66 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g--- 66 (156)
....+++.++|.|++|||||.|.+.+........|..+.+.....+...+ .+..++++|+.|
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 34568999999999999999999998877655566666555555544322 235689999888
Q ss_pred ----cccccchhhhheecccEEEEEEECCC
Q 031598 67 ----QERFQSLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 67 ----~~~~~~~~~~~~~~~~~~l~v~d~~~ 92 (156)
.....+..-..++.+|+++-|+++..
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33344555556788999999998874
No 338
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=5.7e-08 Score=74.62 Aligned_cols=119 Identities=23% Similarity=0.239 Sum_probs=85.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCC-----CCCCC-----------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKK-----FSNQY-----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
+..+|.+...-.+||||+-++++... ..... ....+.+..+.-....+..++++++||||+-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 45788899999999999998876321 11100 111223333433444555789999999999999
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.......++..|+.++++|......-+...-|.+.- ++ +.|.+.++||+|....+
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-ry-------~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-RY-------NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-hc-------CCCeEEEEehhhhcCCC
Confidence 999999999999999999988765445444454432 21 78999999999998763
No 339
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.60 E-value=1.3e-07 Score=66.16 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=53.4
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
..+|+.+|++|+.+-+..|..++....++++|+.++.-. +-..+++.+..+.+.-...-...+.+|++.||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367999999999999999999999999999999988621 1122222222222211111112668999999999
Q ss_pred CCCC
Q 031598 129 VDGG 132 (156)
Q Consensus 129 l~~~ 132 (156)
+..+
T Consensus 281 llae 284 (379)
T KOG0099|consen 281 LLAE 284 (379)
T ss_pred HHHH
Confidence 9765
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=1.6e-07 Score=69.24 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=37.2
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
++++|.+|+|||||||+|.+...... ......++.....+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 68999999999999999997643211 1112223333444444433 2489999976665
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.9e-07 Score=69.63 Aligned_cols=120 Identities=24% Similarity=0.340 Sum_probs=73.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCc-------------------------------------------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT------------------------------------------- 40 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~------------------------------------------- 40 (156)
.+...||++.|..++||||++|+++..+.-+.. .++
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 345689999999999999999999876542110 000
Q ss_pred eeeEEEEEEEEECCeE----EEEEEEeCCC---cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC
Q 031598 41 IGADFLTKEVQFEDRL----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPS 113 (156)
Q Consensus 41 ~~~~~~~~~~~~~~~~----~~~~i~D~~g---~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 113 (156)
.+.......+..++.. -.+.++|.|| ..+...-...+...+|++|+|.++.+..+..+- .++.. ....
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~----vs~~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHK----VSEE 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHH----hhcc
Confidence 0000001111111100 1368889999 334455566777889999999999887654443 22222 2222
Q ss_pred CCCCCcEEEEEecCCCCCC
Q 031598 114 DPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 114 ~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+.++-||.|....
T Consensus 261 ---KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 ---KPNIFILNNKWDASAS 276 (749)
T ss_pred ---CCcEEEEechhhhhcc
Confidence 3457888899999876
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.57 E-value=9.8e-08 Score=67.12 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=69.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC-ceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccch
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL 73 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 73 (156)
+.+..+++++|.+++|||+|++.+...+....... ..+.+.....+.... .+.++|.|| ..++..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 35568999999999999999999987765433332 444444444444333 688899999 1222333
Q ss_pred hhhheecc---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGA---DCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~---~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++-.. --+++++|++-+-.-.. ...|.. .. ++|+.+|.||||...+
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g-------e~---~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG-------EN---NVPMTSVFTKCDKQKK 263 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh-------hc---CCCeEEeeehhhhhhh
Confidence 33333222 23455566665321111 122222 22 8999999999999765
No 343
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=5.1e-08 Score=69.90 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=78.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceee-------------------EEE-EEEEEEC----CeEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGA-------------------DFL-TKEVQFE----DRLFT 58 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~-------------------~~~-~~~~~~~----~~~~~ 58 (156)
+..++|..+|.-.-|||||..++.+--.. ++-....+. .+. ...+... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 57899999999999999999999754211 000000000 000 0001101 11246
Q ss_pred EEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeee
Q 031598 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVC 138 (156)
Q Consensus 59 ~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 138 (156)
+.++|.||++-.......-..-.|++++|+.++.+..-....+-+. -+.... -..+++|-||+||...+...++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIig-----ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIG-----IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhc-----cceEEEEecccceecHHHHHHH
Confidence 8999999997655444433445699999999998542111122111 122223 3369999999999987545555
Q ss_pred eccccc
Q 031598 139 FGEEGS 144 (156)
Q Consensus 139 ~~e~~~ 144 (156)
++++++
T Consensus 162 y~qIk~ 167 (415)
T COG5257 162 YEQIKE 167 (415)
T ss_pred HHHHHH
Confidence 555444
No 344
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.55 E-value=2.2e-06 Score=59.71 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=52.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCCCC-CceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------hh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQS------LG 74 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~ 74 (156)
..+..-|.|+|++++|||+|+|.+++. .+..... ...+........... +....+.++||+|...... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 455677899999999999999999988 4432111 111111112222211 2346899999999554322 12
Q ss_pred hhheec--ccEEEEEEECCCh
Q 031598 75 VAFYRG--ADCCVLVYDVNSM 93 (156)
Q Consensus 75 ~~~~~~--~~~~l~v~d~~~~ 93 (156)
...+.. ++++++..+....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 84 LFALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHHhCEEEEeccCccc
Confidence 233333 7888877776654
No 345
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=7e-07 Score=66.48 Aligned_cols=114 Identities=18% Similarity=0.028 Sum_probs=79.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
-|+-.|.-.-|||||+..+.+... ++......+.+....... ..+..+.++|+||++++-.....-+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~--~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK--LEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc--CCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 356778888999999999986643 333344444554444443 344589999999999998888888889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++.++.-..+..+ ...++..+. ....++|+||+|+.++
T Consensus 80 vV~~deGl~~qtgE--hL~iLdllg-----i~~giivltk~D~~d~ 118 (447)
T COG3276 80 VVAADEGLMAQTGE--HLLILDLLG-----IKNGIIVLTKADRVDE 118 (447)
T ss_pred EEeCccCcchhhHH--HHHHHHhcC-----CCceEEEEeccccccH
Confidence 99997644333221 222333333 2346999999999975
No 346
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.50 E-value=1e-06 Score=58.05 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998865
No 347
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.7e-07 Score=69.92 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=81.1
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCC------------CC------CCCCCceeeEEEEEEEE------------E
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK------------FS------NQYKATIGADFLTKEVQ------------F 52 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~------~~~~~~~~~~~~~~~~~------------~ 52 (156)
.++.+..++.|+..-.-|||||-..|.... +. +....+...+..+..++ .
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 345667889999999999999999886431 11 11111111111111111 1
Q ss_pred CCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 53 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
++..+.++++|.||+.+|.+...+.++-.|+.+.|+|+-+..-.+.-.-+.+.+.+. +.-++|.||.|..
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER--------IkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER--------IKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh--------ccceEEeehhhHH
Confidence 345688999999999999999999999999999999999865444333344555443 3347889999974
No 348
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=4.4e-07 Score=63.98 Aligned_cols=58 Identities=26% Similarity=0.253 Sum_probs=36.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQ------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
.++++|.+|+|||||||++.+...... ......++.....+...+ -.++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 579999999999999999997643211 111122333333444432 2689999976554
No 349
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=4.2e-07 Score=67.10 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=35.3
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSN------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
++|+|++|+|||||||+|.+..... .......++.....+..++.. .++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 7999999999999999999654321 111111133334444454332 5899999443
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.44 E-value=3e-07 Score=63.18 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=22.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.....|.++|..|+|||||+++++..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34688999999999999999998754
No 351
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.43 E-value=2.1e-07 Score=70.93 Aligned_cols=117 Identities=24% Similarity=0.398 Sum_probs=88.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+|+.|+|..++|||.|+.+++...+.+...+..+ .+.+.+..++....+-+.|..|.... .|-...|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCchh-----hhhhhccceE
Confidence 4468999999999999999999998887765555443 34555666777788888888873322 2456789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+||...+..+|+.+......+..+.. ...+|+++|+++.=....
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~ 144 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAK 144 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcc
Confidence 99999999999998877777665544 337899999987555444
No 352
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.42 E-value=8.2e-07 Score=65.98 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
.++.++|.+|+|||||+|++.+.... .......+++.....+..++ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 48999999999999999999975421 11223333444444444422 35799999943
No 353
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.41 E-value=8.4e-07 Score=62.55 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=46.8
Q ss_pred ccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+..+...+++++|.+++|||+.++. ++..+..|+..+.. .++|+++|+||+||.++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~ 82 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD 82 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC
Confidence 344556667889999999999999887 88888888875532 27899999999999754
No 354
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.40 E-value=7.4e-07 Score=65.51 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=77.4
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCe--------------
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------------KATIGADFLTKEVQFEDR-------------- 55 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-------------- 55 (156)
..+..+.+.+.|.-+.|||||+-.|...+..+-. ....+.+.....+.+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 3556788999999999999999888755432111 111112222222323221
Q ss_pred -------EEEEEEEeCCCcccccchhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598 56 -------LFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (156)
Q Consensus 56 -------~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 126 (156)
+--+.++||.|++.|......-+ ...|..++++.+++..+.- .+.+.-+.... ..|+++|.||
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~--tkEHLgi~~a~------~lPviVvvTK 264 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM--TKEHLGIALAM------ELPVIVVVTK 264 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh--hhHhhhhhhhh------cCCEEEEEEe
Confidence 12478999999998865544333 5689999999999864322 22222222222 7899999999
Q ss_pred CCCCCCC
Q 031598 127 IDVDGGN 133 (156)
Q Consensus 127 ~Dl~~~~ 133 (156)
+|+.+++
T Consensus 265 ~D~~~dd 271 (527)
T COG5258 265 IDMVPDD 271 (527)
T ss_pred cccCcHH
Confidence 9998875
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=98.40 E-value=5.8e-07 Score=66.87 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
.++.++|.+++|||||||+|....... ...+..+++.....+..++. ..++||||.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 478999999999999999998543111 11233344444444444432 469999994
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=8.4e-06 Score=53.22 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=67.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc------------------
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------------ 68 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~------------------ 68 (156)
..+||.+.|+||+||||++.++...--.. .... -...+..+.-++...-|.+.|+...+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-Ccee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 45899999999999999999887432111 1111 12344555556777788888887311
Q ss_pred ----cccchh----hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 69 ----RFQSLG----VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 69 ----~~~~~~----~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
.++... ...++.+|+ +++|--.+--+. ...+.+.+...+.. ..|++.+.++-+.
T Consensus 81 V~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~vl~~----~kpliatlHrrsr 142 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEVLKS----GKPLIATLHRRSR 142 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHHhcC----CCcEEEEEecccC
Confidence 111111 122234564 455766654333 35566666666654 6789998887744
No 357
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=62.64 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=39.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
-.+++|.+|+|||||+|+|..... .........++.....+.+++.+ .|+||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 458999999999999999986321 22333334455556666665433 377999976665
No 358
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.29 E-value=2e-06 Score=62.09 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 71 (156)
..++++|++|+|||||+|.+.+........ ....++.....+...+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 468999999999999999999765332111 11112333333444322 2589999976554
No 359
>PRK00098 GTPase RsgA; Reviewed
Probab=98.28 E-value=2.2e-06 Score=62.20 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCC------CceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK------ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
..++++|.+|+|||||+|+|.+........ ....++.....+..++. ..++||||...+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 357899999999999999998765332111 11112222333333332 368999996544
No 360
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.3e-06 Score=63.25 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=79.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhc-------CCC-------CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVN-------KKF-------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
.++..||.-+|.-.-|||||-..+.. .++ ........+.+.....+.|.......-=.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 45568999999999999999776641 111 1122333445566666666555555566799999988
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
-.....-....|+.++|+.+.|....+.=. +..+.+... -..+++++||.|+.++
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrE--HlLLArQVG-----V~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTRE--HLLLARQVG-----VKHIVVFINKVDLVDD 185 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHH--HHHHHHHcC-----CceEEEEEecccccCC
Confidence 766666667789999999999965433211 112222222 2358899999999965
No 361
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.25 E-value=6.3e-06 Score=57.80 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 81 (156)
-+|-++|-|++||||++..+.+...+.......+.+.......+++ -.+++.|.||.-+ ......+..+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 5899999999999999999987754332222222222233333444 5799999999332 234455667889
Q ss_pred cEEEEEEECCChhhHHHH
Q 031598 82 DCCVLVYDVNSMKSFDNL 99 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~ 99 (156)
+.+++|.|+..|-+-..+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999999987665544
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.25 E-value=5.6e-06 Score=62.50 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=62.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc------CCC----CCCCC-----------CceeeEEEEEEEEEC-------------
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN------KKF----SNQYK-----------ATIGADFLTKEVQFE------------- 53 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~------~~~----~~~~~-----------~~~~~~~~~~~~~~~------------- 53 (156)
..-|+++|++|+||||++..|.. .+. .+.+. ...+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999988852 211 01100 001111111000000
Q ss_pred CeEEEEEEEeCCCcccccchhhhh------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
...+.+.|+||+|........... ....+-+++|+|+.....- ......+.+.. .+--++.||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKl 249 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKL 249 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECc
Confidence 124678999999954332222221 1246789999998764322 22233333221 2557889999
Q ss_pred CCCCC
Q 031598 128 DVDGG 132 (156)
Q Consensus 128 Dl~~~ 132 (156)
|....
T Consensus 250 D~~ar 254 (429)
T TIGR01425 250 DGHAK 254 (429)
T ss_pred cCCCC
Confidence 98654
No 363
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.22 E-value=7.1e-06 Score=44.08 Aligned_cols=45 Identities=27% Similarity=0.256 Sum_probs=31.2
Q ss_pred ecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 79 RGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
.-.+++++++|.+.. .+.++....+++++..+. +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 346899999999984 456777778888888876 779999999998
No 364
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=5.2e-06 Score=58.76 Aligned_cols=116 Identities=20% Similarity=0.319 Sum_probs=69.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC----ceeeEEEEEEEEECCeEEEEEEEeCCC-------cccccc----
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA----TIGADFLTKEVQFEDRLFTLQIWDTAG-------QERFQS---- 72 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g-------~~~~~~---- 72 (156)
.++|+-+|..|.|||||+.+|++..+...+.+ .......+....-.+....++++||.| .+.|..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 48999999999999999999999887543322 222222222233355667899999999 111111
Q ss_pred ---hhhhhe---------------ecccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 73 ---LGVAFY---------------RGADCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 73 ---~~~~~~---------------~~~~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+|+ ...++.++.+..... ++.++. -.+..+.+ ...+|-|+.|+|-..+
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds--------kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS--------KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh--------hhhhHHHHHHhhhhhH
Confidence 111111 346888888876653 333332 12222221 5567778888887654
No 365
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.17 E-value=3.1e-07 Score=63.23 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=48.6
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 124 (156)
...-|.++|++|+..-+..|..++++.-.+++++..+. ....++....+..+..+ .--.+.++|++.
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y---PWF~nssVIlFL 273 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQNSSVILFL 273 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc---ccccCCceEEEe
Confidence 34567899999988888888888877666665544432 22333333333333321 222277999999
Q ss_pred ecCCCCCCC
Q 031598 125 NKIDVDGGN 133 (156)
Q Consensus 125 nK~Dl~~~~ 133 (156)
||-|+.+++
T Consensus 274 NKkDlLEek 282 (359)
T KOG0085|consen 274 NKKDLLEEK 282 (359)
T ss_pred chhhhhhhh
Confidence 999998763
No 366
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.16 E-value=5.1e-06 Score=62.44 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=57.6
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-------SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
..+.++|++|+..-+..|..++..++++++|+++++-+ ....+.+-+..+...+......+.|++|+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 67899999999999999999999999999999987521 12334444444544445444448899999999999
Q ss_pred CCCC
Q 031598 130 DGGN 133 (156)
Q Consensus 130 ~~~~ 133 (156)
..++
T Consensus 316 f~~K 319 (389)
T PF00503_consen 316 FEEK 319 (389)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 367
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.15 E-value=7.2e-06 Score=58.90 Aligned_cols=106 Identities=14% Similarity=0.260 Sum_probs=65.9
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------------
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------------- 66 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------------- 66 (156)
.+.++.+++++|+++.|||+++++|........ .... ..+.+..+..|.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 455678899999999999999999997664322 1111 011233333332
Q ss_pred -------cccccchhhhheecccEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598 67 -------QERFQSLGVAFYRGADCCVLVYDVNSM---KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (156)
Q Consensus 67 -------~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 126 (156)
...........++.+.+=++++|--.. .+....+.++..+....+.. ++|++.|||+
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccH
Confidence 112233344567888999999997653 23344455555555554443 8899999976
No 368
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=6.1e-06 Score=68.76 Aligned_cols=111 Identities=23% Similarity=0.245 Sum_probs=63.9
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCC------CCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----c----ccccchhhh
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----Q----ERFQSLGVA 76 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----~----~~~~~~~~~ 76 (156)
-+|+|++|+||||++..-. .+++ .......+ +. ....-+.+ .-.++||.| + +.-...|..
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~-~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TR-NCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-Cc-ccCccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 3899999999999875433 2221 11111111 11 11122222 457889998 2 122344554
Q ss_pred he---------ecccEEEEEEECCChhh---------HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 77 FY---------RGADCCVLVYDVNSMKS---------FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 77 ~~---------~~~~~~l~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++ +..+++++.+|+++.-. ...++.-++++...+.. ..||++++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEecccccc
Confidence 43 45799999999987221 11133334455554443 789999999999975
No 369
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.13 E-value=6.8e-06 Score=58.70 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=65.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCC-----------CCCCCCcee---------------eEEEEEEEEECC-------
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKF-----------SNQYKATIG---------------ADFLTKEVQFED------- 54 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~---------------~~~~~~~~~~~~------- 54 (156)
...|.|.|.||+|||||+..|...-. .+....+-| ...+...+...+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~ 130 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSR 130 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhH
Confidence 46899999999999999998863211 011111111 122222221111
Q ss_pred -----------eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 031598 55 -----------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123 (156)
Q Consensus 55 -----------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 123 (156)
.++.+.|+.|.|.-+.+.. ...-+|.+++|.-..-.+..+.++.-+.++ -=++|
T Consensus 131 at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------------aDi~v 195 (323)
T COG1703 131 ATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI------------ADIIV 195 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh------------hheee
Confidence 2356889999985433322 334588888887666666666665544444 12899
Q ss_pred EecCCCCCC
Q 031598 124 GNKIDVDGG 132 (156)
Q Consensus 124 ~nK~Dl~~~ 132 (156)
+||.|+.+.
T Consensus 196 INKaD~~~A 204 (323)
T COG1703 196 INKADRKGA 204 (323)
T ss_pred EeccChhhH
Confidence 999996654
No 370
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.12 E-value=7.3e-07 Score=62.50 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=19.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~ 29 (156)
+.+.|.|.|+||+|||||+..|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 45789999999999999999886
No 371
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=3.6e-05 Score=50.17 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
.+.+.++||+|... ....++..+|-++++...+-.+...-+ ...+.+. .=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~~---------~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI---KAGIMEI---------ADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh---hhhHhhh---------cCEEEEeCCC
Confidence 46789999988542 223477889988888766633222211 1122222 2389999998
No 372
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.08 E-value=6.9e-06 Score=54.64 Aligned_cols=108 Identities=26% Similarity=0.390 Sum_probs=56.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeC-CCc---------------------
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ--------------------- 67 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~--------------------- 67 (156)
+|++.|++|+||||++++++..-. ....+..| +.+....-++....|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999874421 11122222 33344444566667777777 331
Q ss_pred -ccccchhhhhe----ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 68 -ERFQSLGVAFY----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 68 -~~~~~~~~~~~----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
+.+.......+ ..++ ++++|--.+--+. ...|.+.+...+.. +.|++.++.+.
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s----~~~vi~vv~~~ 135 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDS----NKPVIGVVHKR 135 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCT----TSEEEEE--SS
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcC----CCcEEEEEecC
Confidence 11111111122 2345 7777766542211 24566666666653 67899998887
No 373
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.05 E-value=5.7e-05 Score=50.34 Aligned_cols=67 Identities=24% Similarity=0.140 Sum_probs=39.3
Q ss_pred EEEEEEEeCCCcccccc----hhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 56 LFTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~----~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
.+.+.++|++|...... ....+. ...+.+++|+|...... ..++...+.+.. + ...+|.||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcC
Confidence 34588899999643211 111111 24899999999875432 223344443322 2 24677799998
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 765
No 374
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.03 E-value=8.5e-06 Score=61.92 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
.+.|.++|.|++||||.||.|.+++.... ..|.|.+-.-..+.+.. .+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCC
Confidence 68999999999999999999999874322 23333332222333333 477889999
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=1.7e-05 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++++|++|+||||++..|...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999998754
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.03 E-value=1.7e-05 Score=56.77 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=39.9
Q ss_pred EEEEEEEeCCCcccccchhhh-------h-----eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 031598 56 LFTLQIWDTAGQERFQSLGVA-------F-----YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVL 123 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~-------~-----~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 123 (156)
++.+.++||||.......... . -..+|..++|+|+.... +.+ .....+.+... +--+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~~-------~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAVG-------LTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhCC-------CCEEE
Confidence 367899999996543222111 1 12378999999998542 222 22333332221 35789
Q ss_pred EecCCCCCC
Q 031598 124 GNKIDVDGG 132 (156)
Q Consensus 124 ~nK~Dl~~~ 132 (156)
.||.|....
T Consensus 224 lTKlDe~~~ 232 (272)
T TIGR00064 224 LTKLDGTAK 232 (272)
T ss_pred EEccCCCCC
Confidence 999998654
No 377
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=3.8e-05 Score=53.75 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=67.7
Q ss_pred EEEEEEcCCCC--ChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEE--EEEEEeCCCcccccchhhhheecccEE
Q 031598 9 LKVIILGDSGV--GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLF--TLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 9 ~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..++|+|-+|+ ||.+++.+|....+.........+.+.. ++++.+-+ .+++.-.+.-+++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 46789999998 9999999999888764433332222222 22222211 223322332222211111222445789
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++||.+....+..++.|.... .... ---.+.+|||+|...+
T Consensus 83 vmvfdlse~s~l~alqdwl~ht----dins--fdillcignkvdrvph 124 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHT----DINS--FDILLCIGNKVDRVPH 124 (418)
T ss_pred EEEEeccchhhhHHHHhhcccc----cccc--chhheecccccccccc
Confidence 9999999999888888887642 1111 1124677899998654
No 378
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.00 E-value=4.3e-05 Score=46.54 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=49.8
Q ss_pred EEEEc-CCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 11 VIILG-DSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 11 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
|++.| .+|+||||+...+...--. ...+..-.+ .+.. +.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56666 6789999987776533211 111111111 1111 67899999996533 23367788999999987
Q ss_pred CCChhhHHHHHHHHH
Q 031598 90 VNSMKSFDNLNNWRE 104 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (156)
.+ ..++..+..+.+
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555554
No 379
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=1.7e-05 Score=58.47 Aligned_cols=117 Identities=22% Similarity=0.352 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCC-----------------------CCCCceeeEEEEEEEEECC----------
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------QYKATIGADFLTKEVQFED---------- 54 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~---------- 54 (156)
.++++++|...+|||||+--|.+..... ......+.+.....+.|..
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4899999999999999987776443210 0011111121111222211
Q ss_pred eEEEEEEEeCCCcccccchhhhheec--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..-.++++|..|+..|......-+.. .|..++|+++...-.+.. ++ +..+...+ ++|++++.+|+|+.+.
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~~AL------~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLIAAL------NIPFFVLVTKMDLVDR 318 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHHHHh------CCCeEEEEEeeccccc
Confidence 11247899999999887666655543 588888988887543322 11 11222222 8899999999999986
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.93 E-value=5.3e-06 Score=60.62 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
..-++++|++|+||||++..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999988763
No 381
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.90 E-value=1.2e-05 Score=59.45 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=43.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
++.+++.|+|-+++||||+||+|..++.-. ..+..|.+.....++.+. .+.|.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCc
Confidence 567999999999999999999999877532 244555555566665544 688999999
No 382
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.89 E-value=8.4e-05 Score=47.88 Aligned_cols=107 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred EEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC
Q 031598 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (156)
Q Consensus 12 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~ 91 (156)
+.-|.+|+||||+...+...--. ......-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 45578999999997766532100 001111111110 001112678999999854 333456788899999998876
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 92 SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
. .++.......+.+..... ..++.+|.|+++..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~~-----~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQLR-----VLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCCCH
Confidence 3 344444444444433221 45788999999754
No 383
>PRK13695 putative NTPase; Provisional
Probab=97.82 E-value=0.00016 Score=48.30 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+++++.|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999986543
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00012 Score=56.73 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
-.++|+|+.|+||||++..|..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988764
No 385
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.79 E-value=0.00017 Score=52.90 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++.|--|||||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3588899999999999999854
No 386
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.76 E-value=2.9e-05 Score=52.59 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=38.8
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+..++..+++.+|++++|+|+.++.. .|...+.... .+.|+++|+||+|+..+
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCC
Confidence 3357788888999999999999987542 1222221111 26799999999999754
No 387
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.76 E-value=6.7e-05 Score=54.20 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=40.2
Q ss_pred hhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+.++|.+++|+|+.++. ++..+..|+..+.. . ++|+++|+||+||.++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~---~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----A---GIEPVIVLTKADLLDD 124 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----c---CCCEEEEEEHHHCCCh
Confidence 34578899999999999987 77777777665432 1 6799999999999754
No 388
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.74 E-value=2.9e-05 Score=52.97 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~ 29 (156)
.+..+|+|+.||||||+.+.+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHH
Confidence 3567999999999999999885
No 389
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.74 E-value=2.8e-05 Score=48.59 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 390
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=2.9e-05 Score=51.66 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+|+|+|++|||||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988754
No 391
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.72 E-value=0.00034 Score=42.90 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=55.7
Q ss_pred cCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh
Q 031598 15 GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK 94 (156)
Q Consensus 15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~ 94 (156)
+.+|+||||+...|...-.........-.+... ... ..+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~-----~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDL-----QFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC-----CCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 478899999877665321110011111111111 111 16899999996533 3345678899999988766 44
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEec
Q 031598 95 SFDNLNNWREEFLIQASPSDPDNFPFVVLGNK 126 (156)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 126 (156)
+......+.+.+.+.-.. +...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYS---LPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence 555566666655543211 13357788775
No 392
>PRK14974 cell division protein FtsY; Provisional
Probab=97.72 E-value=3.2e-05 Score=56.94 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=37.8
Q ss_pred EEEEEEeCCCcccccchh----hhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 57 FTLQIWDTAGQERFQSLG----VAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+.+.++||+|........ ... ....|..++|.|+.... ........+..... .--++.||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~~-------~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAVG-------IDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcCC-------CCEEEEeeecCC
Confidence 468999999965322111 111 12468889999987643 22222233322221 347889999986
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 54
No 393
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=0.00031 Score=44.69 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
...+++.|++|+|||++++.+.+.-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998664
No 394
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.71 E-value=6.3e-05 Score=54.09 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=38.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCC----CCCCceeeEEEEEE-EEECCeEEEEEEEeCCCc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN----QYKATIGADFLTKE-VQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~ 67 (156)
...+++.|+|.|++|||||||.+.+..... ......|.+..+.. +.+.... .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 356899999999999999999887554321 11222333333333 3333332 4788999993
No 395
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.71 E-value=2.9e-05 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.795 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+|+|+|+|||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.71 E-value=0.00041 Score=41.11 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=44.8
Q ss_pred EEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-hhhheecccEEEEEEE
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD 89 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~l~v~d 89 (156)
+++.|..|+||||+...+...-... ... . .-.+ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKR-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCe-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 5788999999999988876442110 011 1 1111 6889999986533321 1455667899999887
Q ss_pred CCChh
Q 031598 90 VNSMK 94 (156)
Q Consensus 90 ~~~~~ 94 (156)
.....
T Consensus 68 ~~~~~ 72 (99)
T cd01983 68 PEALA 72 (99)
T ss_pred Cchhh
Confidence 77543
No 397
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.70 E-value=4.5e-05 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFS 34 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~ 34 (156)
.++++|++|||||||++++.+-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 5789999999999999999877643
No 398
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.67 E-value=3.3e-05 Score=50.61 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=35.8
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.++...++.+|++++|+|++++..... .. +....... +.|+++|+||+|+.++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~----l~~~~~~~---~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK----LERYVLEL---GKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH----HHHHHHhC---CCcEEEEEEhHHhCCH
Confidence 4456677788999999999987643222 11 11111111 6799999999999643
No 399
>PRK07261 topology modulation protein; Provisional
Probab=97.67 E-value=4.2e-05 Score=51.05 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
+|+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998744
No 400
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.65 E-value=6e-05 Score=48.60 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=34.5
Q ss_pred hhheecccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFD--NLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...++.+|++++|+|+.++.+.. .+..+... .. .+.|+++|+||+|+.++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~----~~----~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE----VD----PRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh----cc----CCCcEEEEEechhcCCH
Confidence 34668899999999999876533 22222221 11 26799999999999754
No 401
>PF05729 NACHT: NACHT domain
Probab=97.65 E-value=0.00013 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++|.|.+|+||||++.++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 3689999999999999998754
No 402
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.64 E-value=4.2e-05 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999844
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=4.8e-05 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHhcCCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~ 33 (156)
++++|++|||||||++-+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999987653
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.00056 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
...|+++|+.|+||||-+-.|..+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999888876543
No 405
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=2.7e-05 Score=57.76 Aligned_cols=130 Identities=19% Similarity=0.180 Sum_probs=77.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (156)
+....+++++|.-.+||||+-..+....- .+..... .+.......+.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kg--KtvEvGrA~FE 153 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKG--KTVEVGRAYFE 153 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhcc--ceeeeeeEEEE
Confidence 45679999999999999997655432100 0111111 11222222222
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHHHHHHHH--HHHHhcCCCCCCCCcEEEEEecCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWRE--EFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
-...++++.|.||+..|-.....-...+|..++|+++...+ .|+.--+-++ .+..... -...|+++||+|
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMd 228 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMD 228 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEecc
Confidence 33457999999999888766666677889999998875422 2333211122 2222222 346899999999
Q ss_pred CCCCCceeeeecc
Q 031598 129 VDGGNSRVVCFGE 141 (156)
Q Consensus 129 l~~~~~~~~~~~e 141 (156)
-+..+-+...++|
T Consensus 229 dPtvnWs~eRy~E 241 (501)
T KOG0459|consen 229 DPTVNWSNERYEE 241 (501)
T ss_pred CCccCcchhhHHH
Confidence 9877544444443
No 406
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.57 E-value=8.3e-05 Score=51.12 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=22.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+.+..-|+|+|++||||||+++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445567889999999999999999754
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=97.57 E-value=0.00064 Score=51.79 Aligned_cols=65 Identities=25% Similarity=0.170 Sum_probs=36.4
Q ss_pred EEEEEEeCCCcccccch----hhhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 57 FTLQIWDTAGQERFQSL----GVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+.+.|+||+|....... .... .-..+.+++|+|.... +........+..... ..-+|.||.|-.
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~~-------i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEALG-------LTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence 56899999995432111 1111 1246778999998754 233333444433221 235777999964
Q ss_pred C
Q 031598 131 G 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 254 ~ 254 (433)
T PRK10867 254 A 254 (433)
T ss_pred c
Confidence 4
No 408
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.56 E-value=6.6e-05 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHhcCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (156)
++|+|++|||||||++-+.+-.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6899999999999999998766
No 409
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.56 E-value=0.0005 Score=52.45 Aligned_cols=65 Identities=20% Similarity=0.085 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccccchh----h--hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 57 FTLQIWDTAGQERFQSLG----V--AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~----~--~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
..+.|+||+|........ . ..+..+|.+++|+|+.... ........+...+. .--+|.||.|..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l~-------i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAVG-------IGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcCC-------CCEEEEecccCC
Confidence 368999999955432221 1 1233578899999987752 22222333322111 235778999975
Q ss_pred C
Q 031598 131 G 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.55 E-value=0.00026 Score=53.82 Aligned_cols=65 Identities=25% Similarity=0.173 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccccchhhhh------eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAF------YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~------~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+.+.|+||+|........... .-..+.+++|+|+... +....+...+...+. .--+|.||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence 568999999954322111111 1246788999998754 333344444443322 235778999964
Q ss_pred C
Q 031598 131 G 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 253 ~ 253 (428)
T TIGR00959 253 A 253 (428)
T ss_pred c
Confidence 3
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.55 E-value=0.0017 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEcCCCCChhHHHHHHhcCCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~ 33 (156)
.++-|-=||||||+++.++.+..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 47888999999999999986653
No 412
>PRK12289 GTPase RsgA; Reviewed
Probab=97.54 E-value=0.00021 Score=53.04 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=36.1
Q ss_pred hheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++++|.+++|+|+.++. ....+..|+.... . .++|+++|+||+||.++
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~---~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAE----S---TGLEIVLCLNKADLVSP 135 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----H---CCCCEEEEEEchhcCCh
Confidence 3468899999999998875 3334455554331 1 27899999999999754
No 413
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00037 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
.-++++|++||||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999998864
No 414
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.53 E-value=5.2e-05 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 415
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.52 E-value=3.4e-05 Score=57.27 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=50.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc--chhhhheeccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--SLGVAFYRGAD 82 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~ 82 (156)
.+..+.|.++|.|++||||+||+|-..+.-.. .|..|.+-....++.. -++-++|+||..... ......++
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivLk--- 376 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVLK--- 376 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHhh---
Confidence 45678999999999999999999998775433 2333322111111111 268899999944332 22223333
Q ss_pred EEEEEEECCChh
Q 031598 83 CCVLVYDVNSMK 94 (156)
Q Consensus 83 ~~l~v~d~~~~~ 94 (156)
+++-|=++.+|+
T Consensus 377 GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 GVVRVENVKNPE 388 (572)
T ss_pred ceeeeeecCCHH
Confidence 455566666654
No 416
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.52 E-value=0.00011 Score=40.38 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+|.|+.|+||||++..+...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999887643
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.52 E-value=0.00038 Score=44.45 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
--|++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999865
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.00043 Score=52.69 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..++++|++|+||||++..|..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998887653
No 419
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=9.8e-05 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998854
No 420
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.49 E-value=9e-05 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHhcCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (156)
++++|++||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998765
No 421
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.48 E-value=0.00019 Score=47.12 Aligned_cols=51 Identities=14% Similarity=0.077 Sum_probs=33.2
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++.+|++++|+|+.++..-. .......+.. . ..+.|+++|+||+|+.++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~----~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-E----KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-c----cCCCCEEEEEEchhcCCH
Confidence 3567899999999999874221 1122222221 1 115799999999999754
No 422
>PRK00098 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00028 Score=51.30 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=36.0
Q ss_pred heecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+.+|.+++|+|+.++..... +..|+..+.. .++|+++|+||+|+.++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~ 126 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD 126 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC
Confidence 3588999999999988865444 3455544421 17899999999999743
No 423
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.46 E-value=0.00013 Score=41.14 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998855
No 424
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=9.1e-05 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.9
Q ss_pred EEEcCCCCChhHHHHHHhcC
Q 031598 12 IILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 12 ~v~G~~~~GKstli~~l~~~ 31 (156)
+++||+|||||||+++|...
T Consensus 37 AlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred EEECCCCcCHHHHHHHHHhh
Confidence 89999999999999988644
No 425
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.0001 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=22.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+...||+|.|.||+||||+..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35678999999999999999999873
No 426
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.44 E-value=0.00012 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57999999999999999998775
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00012 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.=|+++|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 347999999999999999998654
No 428
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.41 E-value=0.00072 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhcCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (156)
++|.|++|+|||+++..+...-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987553
No 429
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.41 E-value=0.00014 Score=54.22 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=41.9
Q ss_pred cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+.+..+...+.+.++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k 105 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPK 105 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCC
Confidence 5567778888888999999999997654 234445544433 5699999999999754
No 430
>PRK04195 replication factor C large subunit; Provisional
Probab=97.40 E-value=0.00057 Score=52.94 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
...+++.|++|+||||+++.+.+.-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998653
No 431
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.39 E-value=0.00017 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++||||||+++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997653
No 432
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.0001 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.=+++.||+|+||||++++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 346899999999999999999765
No 433
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.39 E-value=0.00015 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhcCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (156)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998663
No 434
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00063 Score=55.03 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
--++++|+.|+||||.+..+...
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 45799999999999999988753
No 435
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.39 E-value=0.00018 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~ 33 (156)
..++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999986653
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=97.38 E-value=0.00022 Score=53.14 Aligned_cols=25 Identities=40% Similarity=0.712 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~ 33 (156)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999987643
No 437
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.38 E-value=4e-05 Score=53.06 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 031598 9 LKVIILGDSGVGKTSLMNQY 28 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l 28 (156)
+.-+|+|+|||||||..+..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred cceEEEcCCCCCccchhhhH
Confidence 44689999999999987654
No 438
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.37 E-value=8.7e-05 Score=54.92 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=38.8
Q ss_pred EEEEEeCCCcccccchhhhhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 58 TLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 58 ~~~i~D~~g~~~~~~~~~~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.++++|..|++.|......-+ .-.|..++++-++-.- .....+ +.-+.- . -+.|+++|.||+|.+..+
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKE-HLgLAL--a----L~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKE-HLGLAL--A----LHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHH-hhhhhh--h----hcCcEEEEEEeeccCcHH
Confidence 578999999998864433222 2346666666554321 000011 111111 1 178999999999999764
No 439
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.001 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...++++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999988763
No 440
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=0.00019 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+++|++||||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 441
>PRK03839 putative kinase; Provisional
Probab=97.35 E-value=0.00015 Score=48.66 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
+|+++|.+||||||+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 442
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.35 E-value=0.00036 Score=48.38 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+...++++.|++|+||||++..|.+
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3346799999999999999998864
No 443
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.35 E-value=0.00016 Score=45.38 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998755
No 444
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.35 E-value=0.00018 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00027 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...|+|.|++|||||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988753
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.34 E-value=0.00024 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
++..-|+|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34466899999999999999998753
No 447
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00018 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHhcCCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~ 33 (156)
+.++|++||||||+++.+.+-..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57999999999999999987653
No 448
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.33 E-value=0.0031 Score=47.70 Aligned_cols=22 Identities=14% Similarity=0.536 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
+=+.|+|+-.+||||||.||..
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred eEEEeecCcccCchhHHHHHHH
Confidence 5689999999999999999964
No 449
>PRK07429 phosphoribulokinase; Provisional
Probab=97.32 E-value=0.00028 Score=51.88 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.3
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
|.+...+.+-|.|.|++|||||||.+.+.+.
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 5566777899999999999999999888743
No 450
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.32 E-value=0.0032 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
.++.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 588899999999999999854
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.32 E-value=0.00022 Score=43.76 Aligned_cols=21 Identities=48% Similarity=0.800 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 031598 9 LKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (156)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 452
>PRK14530 adenylate kinase; Provisional
Probab=97.31 E-value=0.00022 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.31 E-value=0.00021 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.|.|+|+.++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 454
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.30 E-value=0.00022 Score=48.10 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.++|.|.|++|||||+|+.++..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 58999999999999999998763
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.29 E-value=0.00023 Score=47.63 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-|+++|++||||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47999999999999999998753
No 456
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.29 E-value=0.00026 Score=48.44 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+|.++|+.|+|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988754
No 457
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00023 Score=48.37 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||+|-+.+--
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 36899999999999999887543
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.28 E-value=0.00022 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|.+.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 459
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.28 E-value=0.00023 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
++++|+.|||||||++++.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999863
No 460
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.26 E-value=0.00033 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..-+.|+|.+|||||||+.++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346799999999999999999855
No 461
>PRK12288 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.001 Score=49.36 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=38.1
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++|.+++|++.....++..+..|+.... . .++|+++|+||+||.++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~------~~i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T------LGIEPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h------cCCCEEEEEECccCCCc
Confidence 466899999999988788888888766432 1 26799999999999764
No 462
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.26 E-value=0.0003 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
-.++++|+.|||||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4679999999999999998863
No 463
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.25 E-value=0.00026 Score=47.59 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 031598 9 LKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (156)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999887
No 464
>PRK10646 ADP-binding protein; Provisional
Probab=97.24 E-value=0.0021 Score=42.04 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 465
>PRK14532 adenylate kinase; Provisional
Probab=97.24 E-value=0.00028 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
+|+++|++||||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988743
No 466
>PRK08233 hypothetical protein; Provisional
Probab=97.24 E-value=0.00032 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+|.|.+||||||+.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788999999999999999754
No 467
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.00027 Score=49.11 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+++|++|+|||||++.+.+.
T Consensus 33 VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 689999999999999999874
No 468
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00029 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++|+|.+|||||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999988854
No 469
>PRK02496 adk adenylate kinase; Provisional
Probab=97.23 E-value=0.00034 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+++++|++||||||+.+.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 470
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=3.2e-05 Score=55.58 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=69.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCCceee--EEEEEE---------------------------EEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKATIGA--DFLTKE---------------------------VQF 52 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~---------------------------~~~ 52 (156)
++-.++|.-+|.-.-||||++..+.+-.. ..+-....+. .|.... +..
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 45579999999999999999988765421 1100000000 000000 000
Q ss_pred CCe--E----EEEEEEeCCCcccccchhhhheecccEEEEEEECCChh----hHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598 53 EDR--L----FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK----SFDNLNNWREEFLIQASPSDPDNFPFVV 122 (156)
Q Consensus 53 ~~~--~----~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~il 122 (156)
.+. . ..+.++|+||++-.......-..-.|++++++..+.+- +-+.+ ..-+++. -..+++
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL--aaveiM~--------Lkhiii 184 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL--AAVEIMK--------LKHIII 184 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH--HHHHHhh--------hceEEE
Confidence 010 1 23689999999865544433334468888888777632 21211 1112221 225899
Q ss_pred EEecCCCCCCCceeeeec
Q 031598 123 LGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 123 v~nK~Dl~~~~~~~~~~~ 140 (156)
+-||+||..+++..+..+
T Consensus 185 lQNKiDli~e~~A~eq~e 202 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHE 202 (466)
T ss_pred EechhhhhhHHHHHHHHH
Confidence 999999998754433333
No 471
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.22 E-value=0.00032 Score=49.03 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..++|+++|++||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988643
No 472
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.21 E-value=0.00034 Score=47.00 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-.++|+|++|+|||||+|-+.+=.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 357999999999999999887544
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00036 Score=51.80 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=29.0
Q ss_pred CeEEEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHH
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNL 99 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~ 99 (156)
.+.+.+.|+||.|.-..+...-. -.-..|-+++|.|++-...-+..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 35578999999994322211111 11246999999999987554443
No 474
>PRK13949 shikimate kinase; Provisional
Probab=97.20 E-value=0.00035 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+|+++|++||||||+...+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988764
No 475
>PRK06547 hypothetical protein; Provisional
Probab=97.19 E-value=0.00045 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=22.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+...|+|.|.+||||||+.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999754
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.19 E-value=0.00038 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.-.++++|++||||||+++.+.+.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999988653
No 477
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.18 E-value=0.00038 Score=48.12 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 56899999999999999998764
No 478
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.18 E-value=0.00051 Score=46.14 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999765
No 479
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.18 E-value=0.00037 Score=44.67 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.|+++|++|+|||++++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999988754
No 480
>PRK14531 adenylate kinase; Provisional
Probab=97.17 E-value=0.0004 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999888643
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00035 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+++|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999865
No 482
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.17 E-value=0.00035 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHhcCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~ 32 (156)
|+|.|++||||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887553
No 483
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.16 E-value=0.00033 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.4
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|.+.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 578999999999999988753
No 484
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.15 E-value=0.00044 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 485
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.15 E-value=0.00034 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
+|+|+|++||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 486
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.15 E-value=0.00044 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999764
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.15 E-value=0.0004 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998765
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.14 E-value=0.00061 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
No 489
>PLN02200 adenylate kinase family protein
Probab=97.13 E-value=0.00059 Score=47.88 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
....|+++|+|||||||+..++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999888864
No 490
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.13 E-value=0.00047 Score=47.47 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 491
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00042 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999998764
No 492
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00047 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999764
No 493
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.12 E-value=0.00074 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998775
No 494
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.12 E-value=0.0005 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 495
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.11 E-value=0.00077 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
--|++-|+-|+|||||++.+...
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999988743
No 496
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.11 E-value=0.00045 Score=46.35 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+++|++||||||+...+...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988643
No 497
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.11 E-value=0.00049 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 498
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00051 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999864
No 499
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.11 E-value=0.0004 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
||+|+|++||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.10 E-value=0.00051 Score=47.33 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
Done!