Query 031598
Match_columns 156
No_of_seqs 110 out of 1483
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 03:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.4E-32 4.8E-37 188.7 11.6 141 5-153 10-150 (216)
2 3tw8_B RAS-related protein RAB 100.0 2.2E-29 7.5E-34 167.5 14.7 127 1-132 2-128 (181)
3 2fu5_C RAS-related protein RAB 100.0 7.1E-30 2.4E-34 170.5 11.5 128 1-132 1-128 (183)
4 3kkq_A RAS-related protein M-R 100.0 4.7E-29 1.6E-33 166.6 15.1 134 2-141 12-145 (183)
5 3tkl_A RAS-related protein RAB 100.0 7.1E-29 2.4E-33 167.3 15.8 126 3-132 11-136 (196)
6 2bcg_Y Protein YP2, GTP-bindin 100.0 6.9E-29 2.4E-33 168.8 15.6 128 1-132 1-128 (206)
7 2bme_A RAB4A, RAS-related prot 100.0 4E-29 1.4E-33 167.2 14.0 128 1-132 3-130 (186)
8 3t5g_A GTP-binding protein RHE 100.0 1.5E-28 5.1E-33 163.8 15.6 130 6-141 4-133 (181)
9 2efe_B Small GTP-binding prote 100.0 1.8E-28 6.3E-33 163.2 15.7 126 3-132 7-132 (181)
10 2ew1_A RAS-related protein RAB 100.0 8.4E-29 2.9E-33 168.3 13.7 124 5-132 23-146 (201)
11 1z0f_A RAB14, member RAS oncog 100.0 1.1E-28 3.7E-33 163.9 13.9 126 3-132 10-135 (179)
12 2fg5_A RAB-22B, RAS-related pr 100.0 8.6E-29 3E-33 166.8 13.5 127 2-132 17-143 (192)
13 1ky3_A GTP-binding protein YPT 100.0 4.1E-29 1.4E-33 166.3 11.7 132 1-132 1-133 (182)
14 2fn4_A P23, RAS-related protei 100.0 1.1E-28 3.7E-33 164.1 13.7 128 1-132 2-129 (181)
15 1r2q_A RAS-related protein RAB 100.0 1.7E-28 5.8E-33 161.6 14.5 124 5-132 3-126 (170)
16 1z06_A RAS-related protein RAB 100.0 1.2E-28 4.1E-33 165.6 13.5 125 5-132 17-142 (189)
17 1wms_A RAB-9, RAB9, RAS-relate 100.0 4.7E-28 1.6E-32 160.7 16.1 128 4-131 3-130 (177)
18 1vg8_A RAS-related protein RAB 100.0 1.5E-28 5.2E-33 167.0 14.0 131 1-131 1-131 (207)
19 1z0j_A RAB-22, RAS-related pro 100.0 3.8E-28 1.3E-32 160.0 15.4 124 5-132 3-126 (170)
20 1zbd_A Rabphilin-3A; G protein 100.0 5.7E-28 2E-32 163.9 16.4 125 4-132 4-128 (203)
21 2gf9_A RAS-related protein RAB 100.0 3.7E-28 1.3E-32 163.2 15.0 124 5-132 19-142 (189)
22 1ek0_A Protein (GTP-binding pr 100.0 5E-28 1.7E-32 159.3 15.3 122 7-132 2-123 (170)
23 2a5j_A RAS-related protein RAB 100.0 1.6E-28 5.5E-33 165.3 13.1 125 4-132 17-141 (191)
24 2hup_A RAS-related protein RAB 100.0 1.1E-28 3.9E-33 167.5 12.4 124 5-132 26-149 (201)
25 1z08_A RAS-related protein RAB 100.0 1.4E-28 4.7E-33 162.2 12.0 124 5-132 3-126 (170)
26 2g6b_A RAS-related protein RAB 100.0 7.4E-28 2.5E-32 160.2 15.4 125 4-132 6-131 (180)
27 1z2a_A RAS-related protein RAB 100.0 2.1E-28 7.1E-33 161.0 12.2 122 6-132 3-124 (168)
28 2y8e_A RAB-protein 6, GH09086P 100.0 3.5E-28 1.2E-32 161.4 13.0 123 6-132 12-134 (179)
29 1x3s_A RAS-related protein RAB 100.0 9.9E-28 3.4E-32 161.4 15.3 127 2-131 9-135 (195)
30 3l0i_B RAS-related protein RAB 100.0 3.5E-29 1.2E-33 169.6 8.0 132 4-141 29-160 (199)
31 3reg_A RHO-like small GTPase; 100.0 1E-27 3.5E-32 161.6 15.0 131 5-141 20-151 (194)
32 2oil_A CATX-8, RAS-related pro 100.0 5E-28 1.7E-32 163.0 13.3 125 4-132 21-145 (193)
33 2il1_A RAB12; G-protein, GDP, 100.0 4.6E-28 1.6E-32 163.3 12.8 126 3-132 21-146 (192)
34 3bc1_A RAS-related protein RAB 100.0 8.9E-28 3.1E-32 161.3 13.9 126 4-132 7-142 (195)
35 1g16_A RAS-related protein SEC 100.0 5.5E-28 1.9E-32 159.2 12.3 121 7-131 2-122 (170)
36 2o52_A RAS-related protein RAB 100.0 2.9E-28 1E-32 165.3 10.8 124 5-132 22-145 (200)
37 3oes_A GTPase rhebl1; small GT 100.0 4.6E-28 1.6E-32 164.3 11.8 123 6-132 22-144 (201)
38 3c5c_A RAS-like protein 12; GD 100.0 1.1E-27 3.8E-32 160.9 13.4 131 5-140 18-148 (187)
39 3cpj_B GTP-binding protein YPT 100.0 5.8E-28 2E-32 166.3 12.3 124 5-132 10-133 (223)
40 1kao_A RAP2A; GTP-binding prot 100.0 1.5E-27 5.1E-32 156.5 13.6 122 7-132 2-123 (167)
41 3dz8_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 168.2 6.2 125 4-132 19-143 (191)
42 3cbq_A GTP-binding protein REM 100.0 5.9E-28 2E-32 163.3 11.9 132 4-140 19-151 (195)
43 3q85_A GTP-binding protein REM 100.0 8.1E-28 2.8E-32 158.5 12.2 128 8-140 2-130 (169)
44 1c1y_A RAS-related protein RAP 100.0 1.5E-27 5E-32 156.8 13.0 122 7-132 2-123 (167)
45 1u8z_A RAS-related protein RAL 100.0 2E-27 6.9E-32 156.0 13.2 122 7-132 3-124 (168)
46 2a9k_A RAS-related protein RAL 100.0 2.1E-27 7.2E-32 158.7 13.5 124 5-132 15-138 (187)
47 3q3j_B RHO-related GTP-binding 100.0 1.5E-27 5.2E-32 163.4 12.9 121 5-131 24-145 (214)
48 2p5s_A RAS and EF-hand domain 100.0 8.8E-28 3E-32 162.7 11.3 123 5-131 25-147 (199)
49 2bov_A RAla, RAS-related prote 100.0 3.9E-27 1.3E-31 159.8 14.3 124 5-132 11-134 (206)
50 2nzj_A GTP-binding protein REM 100.0 3.2E-27 1.1E-31 156.3 13.2 128 7-140 3-132 (175)
51 1gwn_A RHO-related GTP-binding 100.0 6.5E-27 2.2E-31 159.4 15.1 125 1-131 21-146 (205)
52 4dsu_A GTPase KRAS, isoform 2B 99.9 1.3E-26 4.6E-31 155.1 16.1 123 6-132 2-124 (189)
53 3ihw_A Centg3; RAS, centaurin, 99.9 4.5E-27 1.5E-31 157.6 13.7 128 4-141 16-143 (184)
54 3cph_A RAS-related protein SEC 99.9 4.6E-27 1.6E-31 160.4 14.0 121 6-130 18-138 (213)
55 3q72_A GTP-binding protein RAD 99.9 3E-27 1E-31 155.3 12.6 126 8-140 2-127 (166)
56 1m7b_A RND3/RHOE small GTP-bin 99.9 1.1E-26 3.8E-31 155.4 15.0 123 4-132 3-126 (184)
57 2hxs_A RAB-26, RAS-related pro 99.9 7.3E-28 2.5E-32 159.9 9.1 127 5-132 3-130 (178)
58 3clv_A RAB5 protein, putative; 99.9 8.8E-27 3E-31 157.6 14.1 118 5-128 4-158 (208)
59 2f7s_A C25KG, RAS-related prot 99.9 9.8E-28 3.4E-32 164.3 9.3 125 5-132 22-156 (217)
60 2atv_A RERG, RAS-like estrogen 99.9 5.2E-27 1.8E-31 158.5 12.7 123 5-132 25-147 (196)
61 2yc2_C IFT27, small RAB-relate 99.9 1.1E-27 3.8E-32 162.7 9.4 125 6-131 18-146 (208)
62 2atx_A Small GTP binding prote 99.9 4.4E-26 1.5E-30 153.6 16.1 122 5-132 15-137 (194)
63 2iwr_A Centaurin gamma 1; ANK 99.9 2.4E-26 8E-31 152.8 14.5 127 6-140 5-131 (178)
64 3gj0_A GTP-binding nuclear pro 99.9 1.1E-26 3.6E-31 159.7 11.9 124 4-132 11-134 (221)
65 4djt_A GTP-binding nuclear pro 99.9 5.8E-27 2E-31 160.6 10.4 125 4-132 7-132 (218)
66 2q3h_A RAS homolog gene family 99.9 5.4E-26 1.8E-30 153.9 14.8 123 4-132 16-139 (201)
67 4bas_A ADP-ribosylation factor 99.9 4.4E-26 1.5E-30 153.9 14.0 126 3-132 12-142 (199)
68 2ce2_X GTPase HRAS; signaling 99.9 1.2E-25 4.2E-30 147.1 15.7 121 8-132 3-123 (166)
69 2gco_A H9, RHO-related GTP-bin 99.9 1E-25 3.5E-30 152.8 15.7 123 4-132 21-144 (201)
70 3con_A GTPase NRAS; structural 99.9 1.6E-25 5.3E-30 150.3 16.3 123 5-131 18-140 (190)
71 2erx_A GTP-binding protein DI- 99.9 2.8E-26 9.5E-31 151.2 12.2 123 7-132 2-124 (172)
72 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.2E-25 4E-30 150.1 14.8 121 6-132 3-124 (186)
73 2j1l_A RHO-related GTP-binding 99.9 8.4E-26 2.9E-30 154.7 14.1 121 6-132 32-153 (214)
74 2j0v_A RAC-like GTP-binding pr 99.9 6.4E-26 2.2E-30 154.8 13.3 122 5-132 6-128 (212)
75 2g3y_A GTP-binding protein GEM 99.9 4.1E-26 1.4E-30 156.1 12.2 130 5-140 34-166 (211)
76 1zd9_A ADP-ribosylation factor 99.9 2E-25 6.9E-30 149.8 15.1 121 5-132 19-139 (188)
77 2fv8_A H6, RHO-related GTP-bin 99.9 2.2E-25 7.6E-30 151.8 15.1 121 6-132 23-144 (207)
78 1ksh_A ARF-like protein 2; sma 99.9 4E-25 1.4E-29 147.8 15.1 119 6-132 16-134 (186)
79 4gzl_A RAS-related C3 botulinu 99.9 2.3E-25 7.8E-30 151.5 13.7 122 5-132 27-149 (204)
80 2h57_A ADP-ribosylation factor 99.9 6.9E-25 2.4E-29 147.3 14.8 123 5-132 18-141 (190)
81 2gf0_A GTP-binding protein DI- 99.9 5.4E-25 1.9E-29 148.5 14.3 125 5-132 5-129 (199)
82 1r8s_A ADP-ribosylation factor 99.9 3E-25 1E-29 145.4 12.3 116 9-132 1-116 (164)
83 3bwd_D RAC-like GTP-binding pr 99.9 4.4E-26 1.5E-30 151.8 8.1 122 5-132 5-127 (182)
84 1upt_A ARL1, ADP-ribosylation 99.9 1.7E-24 5.9E-29 142.6 15.1 119 6-132 5-123 (171)
85 1m2o_B GTP-binding protein SAR 99.9 1.8E-24 6.2E-29 145.5 15.2 119 6-132 21-139 (190)
86 2h17_A ADP-ribosylation factor 99.9 4.1E-25 1.4E-29 147.4 12.0 120 5-132 18-137 (181)
87 3t1o_A Gliding protein MGLA; G 99.9 1.3E-25 4.4E-30 151.2 9.4 123 4-132 10-150 (198)
88 1f6b_A SAR1; gtpases, N-termin 99.9 8.5E-25 2.9E-29 148.1 13.2 118 6-131 23-140 (198)
89 1zj6_A ADP-ribosylation factor 99.9 4.9E-25 1.7E-29 147.7 11.8 119 6-132 14-132 (187)
90 2cjw_A GTP-binding protein GEM 99.9 8.5E-25 2.9E-29 147.4 13.0 123 6-132 4-129 (192)
91 1fzq_A ADP-ribosylation factor 99.9 8.9E-25 3.1E-29 145.9 12.9 120 5-132 13-132 (181)
92 2b6h_A ADP-ribosylation factor 99.9 6.7E-25 2.3E-29 147.9 12.3 119 6-132 27-145 (192)
93 2f9l_A RAB11B, member RAS onco 99.9 2.4E-24 8.1E-29 145.8 14.0 123 6-132 3-125 (199)
94 2x77_A ADP-ribosylation factor 99.9 1.4E-24 4.9E-29 145.6 11.5 119 6-132 20-138 (189)
95 2zej_A Dardarin, leucine-rich 99.9 5.5E-25 1.9E-29 147.3 9.2 120 8-132 2-127 (184)
96 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-24 3.7E-29 145.3 10.4 119 6-132 16-134 (183)
97 1oix_A RAS-related protein RAB 99.9 8.6E-24 3E-28 142.3 13.4 123 6-132 27-149 (191)
98 3th5_A RAS-related C3 botulinu 99.8 4.5E-26 1.5E-30 154.8 0.0 121 6-132 28-149 (204)
99 3llu_A RAS-related GTP-binding 99.9 4.2E-24 1.4E-28 144.3 9.6 121 4-132 16-144 (196)
100 2fh5_B SR-beta, signal recogni 99.9 2.8E-23 9.7E-28 141.8 12.7 125 4-132 3-130 (214)
101 2wkq_A NPH1-1, RAS-related C3 99.9 5E-23 1.7E-27 148.9 14.3 121 6-132 153-274 (332)
102 2lkc_A Translation initiation 99.9 2.4E-23 8.1E-28 138.0 11.1 119 4-132 4-122 (178)
103 3r7w_A Gtpase1, GTP-binding pr 99.9 9.6E-23 3.3E-27 146.6 12.9 121 7-132 2-130 (307)
104 3o47_A ADP-ribosylation factor 99.9 6.3E-23 2.2E-27 148.8 10.5 118 7-132 164-281 (329)
105 3lvq_E ARF-GAP with SH3 domain 99.9 4.3E-22 1.5E-26 151.5 15.0 119 6-132 320-438 (497)
106 2ged_A SR-beta, signal recogni 99.9 1.8E-23 6E-28 140.6 6.6 118 6-132 46-171 (193)
107 1nrj_B SR-beta, signal recogni 99.9 2.7E-23 9.3E-28 142.3 6.4 119 5-132 9-135 (218)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 2.4E-23 8.1E-28 149.6 5.9 114 10-133 1-122 (331)
109 2qu8_A Putative nucleolar GTP- 99.9 4.7E-22 1.6E-26 137.2 11.5 124 2-132 23-157 (228)
110 2gj8_A MNME, tRNA modification 99.9 8.3E-22 2.9E-26 130.6 9.9 119 7-132 3-130 (172)
111 3c5h_A Glucocorticoid receptor 99.9 7.4E-23 2.5E-27 143.6 4.4 126 4-132 15-213 (255)
112 2dyk_A GTP-binding protein; GT 99.9 2.1E-21 7.1E-26 126.6 10.7 114 9-132 2-123 (161)
113 2wji_A Ferrous iron transport 99.9 4.6E-21 1.6E-25 126.1 11.6 113 8-132 3-123 (165)
114 1svi_A GTP-binding protein YSX 99.9 1.3E-21 4.5E-26 131.5 8.5 116 6-132 21-149 (195)
115 1wf3_A GTP-binding protein; GT 99.8 2.9E-20 9.8E-25 133.3 14.3 122 1-132 1-132 (301)
116 3dpu_A RAB family protein; roc 99.8 4.6E-22 1.6E-26 152.5 5.0 120 5-132 38-165 (535)
117 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-20 3.9E-25 126.2 10.8 116 5-132 4-127 (188)
118 3iby_A Ferrous iron transport 99.8 4E-21 1.4E-25 134.9 8.2 112 9-132 2-125 (256)
119 3iev_A GTP-binding protein ERA 99.8 4.6E-20 1.6E-24 132.7 13.3 121 3-131 5-136 (308)
120 2cxx_A Probable GTP-binding pr 99.8 1.2E-21 4.2E-26 131.0 4.4 115 9-132 2-137 (190)
121 3i8s_A Ferrous iron transport 99.8 1.1E-20 3.7E-25 133.9 9.4 114 7-132 2-127 (274)
122 3a1s_A Iron(II) transport prot 99.8 2.1E-20 7.3E-25 131.3 10.6 115 6-132 3-125 (258)
123 3def_A T7I23.11 protein; chlor 99.8 5E-20 1.7E-24 129.7 11.9 123 6-132 34-166 (262)
124 3pqc_A Probable GTP-binding pr 99.8 7.8E-21 2.7E-25 127.5 7.2 114 6-133 21-149 (195)
125 3lxx_A GTPase IMAP family memb 99.8 2.2E-19 7.5E-24 124.7 12.4 122 5-132 26-160 (239)
126 3k53_A Ferrous iron transport 99.8 6.9E-20 2.4E-24 129.5 9.9 115 7-132 2-124 (271)
127 3lxw_A GTPase IMAP family memb 99.8 3.5E-20 1.2E-24 129.5 6.9 123 5-132 18-154 (247)
128 4dhe_A Probable GTP-binding pr 99.8 3E-20 1E-24 127.4 6.3 119 6-132 27-159 (223)
129 3b1v_A Ferrous iron uptake tra 99.8 6.1E-20 2.1E-24 129.8 7.7 113 7-132 2-122 (272)
130 3gee_A MNME, tRNA modification 99.8 1.8E-19 6.2E-24 136.0 10.4 118 7-132 232-358 (476)
131 2xtp_A GTPase IMAP family memb 99.8 1.8E-18 6E-23 121.5 13.2 122 5-132 19-154 (260)
132 1h65_A Chloroplast outer envel 99.8 8.9E-19 3E-23 123.8 11.4 122 6-132 37-169 (270)
133 3j2k_7 ERF3, eukaryotic polype 99.8 5.4E-19 1.8E-23 132.6 10.7 122 5-132 14-170 (439)
134 2hjg_A GTP-binding protein ENG 99.8 1E-19 3.5E-24 136.5 5.3 116 7-132 174-301 (436)
135 1mky_A Probable GTP-binding pr 99.8 1.4E-18 4.9E-23 130.3 11.5 113 9-131 2-124 (439)
136 3qq5_A Small GTP-binding prote 99.8 2.6E-19 8.7E-24 133.4 7.0 118 5-133 31-156 (423)
137 3cb4_D GTP-binding protein LEP 99.8 1.3E-18 4.5E-23 134.3 10.8 118 7-132 3-138 (599)
138 2ywe_A GTP-binding protein LEP 99.8 3.3E-18 1.1E-22 132.0 12.8 119 6-132 4-140 (600)
139 3p26_A Elongation factor 1 alp 99.8 1.3E-19 4.3E-24 137.5 4.7 120 6-132 31-186 (483)
140 2e87_A Hypothetical protein PH 99.8 8.1E-18 2.8E-22 123.2 13.8 120 6-132 165-295 (357)
141 2hjg_A GTP-binding protein ENG 99.8 4.5E-19 1.5E-23 133.0 6.8 115 9-132 4-126 (436)
142 3t5d_A Septin-7; GTP-binding p 99.8 7.4E-19 2.5E-23 124.4 7.3 120 5-132 5-159 (274)
143 3sjy_A Translation initiation 99.8 1.1E-17 3.9E-22 124.2 13.6 122 4-132 4-144 (403)
144 4dcu_A GTP-binding protein ENG 99.8 3.5E-19 1.2E-23 134.2 5.2 119 5-132 20-146 (456)
145 1wb1_A Translation elongation 99.8 3.8E-18 1.3E-22 129.2 10.4 115 5-132 16-140 (482)
146 1xzp_A Probable tRNA modificat 99.8 1.8E-18 6.2E-23 130.7 8.3 113 8-132 243-365 (482)
147 1jny_A EF-1-alpha, elongation 99.8 2.4E-19 8.1E-24 134.4 3.2 124 6-132 4-159 (435)
148 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-18 4.1E-23 126.7 6.7 121 9-132 159-289 (342)
149 3tr5_A RF-3, peptide chain rel 99.8 8.2E-19 2.8E-23 134.0 5.9 117 6-132 11-149 (528)
150 1zo1_I IF2, translation initia 99.7 2.3E-19 7.9E-24 135.8 2.6 117 6-132 2-118 (501)
151 3geh_A MNME, tRNA modification 99.7 1.7E-18 5.7E-23 130.4 7.0 114 7-132 223-345 (462)
152 1s0u_A EIF-2-gamma, translatio 99.7 1.2E-17 4E-22 124.3 10.9 119 4-132 4-150 (408)
153 2h5e_A Peptide chain release f 99.7 4.7E-18 1.6E-22 129.9 8.7 118 6-133 11-150 (529)
154 4dcu_A GTP-binding protein ENG 99.7 1.5E-18 5.2E-23 130.8 5.7 117 6-132 193-321 (456)
155 1ega_A Protein (GTP-binding pr 99.7 3.2E-17 1.1E-21 117.5 12.2 115 6-131 6-130 (301)
156 1r5b_A Eukaryotic peptide chai 99.7 3E-18 1E-22 129.4 7.0 120 6-131 41-195 (467)
157 2qtf_A Protein HFLX, GTP-bindi 99.7 4E-17 1.4E-21 119.7 12.7 116 10-132 181-307 (364)
158 3izy_P Translation initiation 99.7 5.1E-20 1.7E-24 140.4 -2.8 117 7-132 3-119 (537)
159 1d2e_A Elongation factor TU (E 99.7 6.9E-18 2.4E-22 125.1 8.6 117 7-131 2-133 (397)
160 1dar_A EF-G, elongation factor 99.7 3.9E-17 1.3E-21 128.4 12.9 118 3-132 7-144 (691)
161 2qag_A Septin-2, protein NEDD5 99.7 2.2E-18 7.5E-23 126.3 5.3 117 7-132 36-189 (361)
162 3ohm_A Guanine nucleotide-bind 99.7 7.2E-18 2.5E-22 121.6 7.8 80 48-132 160-249 (327)
163 1zun_B Sulfate adenylate trans 99.7 3.8E-17 1.3E-21 122.5 11.5 119 5-132 21-172 (434)
164 1n0u_A EF-2, elongation factor 99.7 9E-18 3.1E-22 134.4 8.6 119 5-131 16-164 (842)
165 1kk1_A EIF2gamma; initiation o 99.7 4.2E-17 1.4E-21 121.4 11.5 119 4-132 6-152 (410)
166 1g7s_A Translation initiation 99.7 4.8E-18 1.6E-22 131.3 6.6 116 6-132 3-137 (594)
167 4fid_A G protein alpha subunit 99.7 1.3E-17 4.3E-22 120.8 8.3 74 56-132 160-243 (340)
168 3izq_1 HBS1P, elongation facto 99.7 9.6E-18 3.3E-22 130.1 8.1 123 5-132 164-320 (611)
169 2c78_A Elongation factor TU-A; 99.7 8.2E-18 2.8E-22 125.1 7.2 119 5-131 8-142 (405)
170 1f60_A Elongation factor EEF1A 99.7 3.2E-18 1.1E-22 129.0 3.7 118 5-131 4-159 (458)
171 1cip_A Protein (guanine nucleo 99.7 1.5E-16 5.3E-21 116.0 12.3 78 49-131 187-274 (353)
172 2xtz_A Guanine nucleotide-bind 99.7 1.3E-16 4.5E-21 116.4 11.4 75 55-132 181-265 (354)
173 2xex_A Elongation factor G; GT 99.7 1.4E-16 4.9E-21 125.2 11.9 118 5-132 7-142 (693)
174 2rdo_7 EF-G, elongation factor 99.7 1.9E-16 6.5E-21 124.6 11.9 121 5-133 7-150 (704)
175 2aka_B Dynamin-1; fusion prote 99.7 2.5E-16 8.5E-21 112.4 10.1 119 6-132 24-207 (299)
176 3mca_A HBS1, elongation factor 99.7 1.2E-17 4.1E-22 129.2 3.4 120 5-132 174-330 (592)
177 3vqt_A RF-3, peptide chain rel 99.7 4.6E-16 1.6E-20 119.4 11.9 118 6-133 29-168 (548)
178 1mky_A Probable GTP-binding pr 99.7 3.4E-16 1.1E-20 117.5 10.6 117 6-132 178-307 (439)
179 3t34_A Dynamin-related protein 99.7 1.1E-16 3.8E-21 117.3 7.6 119 7-132 33-218 (360)
180 1jwy_B Dynamin A GTPase domain 99.7 1.1E-16 3.8E-21 115.1 7.4 69 57-132 131-213 (315)
181 2elf_A Protein translation elo 99.7 1.4E-16 4.7E-21 117.1 7.2 101 10-129 23-125 (370)
182 2qpt_A EH domain-containing pr 99.7 8.3E-17 2.8E-21 123.6 5.8 118 6-132 63-233 (550)
183 3avx_A Elongation factor TS, e 99.7 1.6E-16 5.5E-21 128.9 7.7 120 5-132 293-427 (1289)
184 1pui_A ENGB, probable GTP-bind 99.6 3.1E-16 1E-20 106.4 7.4 113 7-132 25-152 (210)
185 2j69_A Bacterial dynamin-like 99.6 1E-15 3.5E-20 120.4 11.1 120 6-132 67-245 (695)
186 1wxq_A GTP-binding protein; st 99.6 1.5E-15 5E-20 112.5 10.3 85 9-93 1-114 (397)
187 2dy1_A Elongation factor G; tr 99.6 1.5E-15 5.1E-20 119.0 9.0 115 6-130 7-139 (665)
188 4fn5_A EF-G 1, elongation fact 99.6 6.4E-15 2.2E-19 116.3 11.9 120 6-133 11-153 (709)
189 4a9a_A Ribosome-interacting GT 99.6 1.4E-14 4.8E-19 106.2 9.4 119 7-132 71-197 (376)
190 2x2e_A Dynamin-1; nitration, h 99.5 1.1E-14 3.8E-19 106.4 7.4 29 6-34 29-57 (353)
191 1jal_A YCHF protein; nucleotid 99.5 7.7E-14 2.6E-18 101.8 10.2 84 9-92 3-108 (363)
192 3j25_A Tetracycline resistance 99.5 1.1E-15 3.9E-20 119.2 0.4 119 7-133 1-135 (638)
193 2qag_C Septin-7; cell cycle, c 99.5 2.6E-14 8.8E-19 106.3 7.2 117 8-132 31-182 (418)
194 2qnr_A Septin-2, protein NEDD5 99.5 1.2E-14 4.1E-19 104.1 3.3 118 7-132 17-170 (301)
195 1udx_A The GTP-binding protein 99.5 1.7E-13 5.8E-18 101.9 9.3 119 10-132 159-284 (416)
196 1azs_C GS-alpha; complex (lyas 99.5 5.6E-13 1.9E-17 98.5 11.2 80 48-132 210-299 (402)
197 1zcb_A G alpha I/13; GTP-bindi 99.4 7E-13 2.4E-17 97.0 9.4 79 48-131 194-282 (362)
198 2dby_A GTP-binding protein; GD 99.4 1.6E-12 5.6E-17 95.2 8.1 84 9-92 2-111 (368)
199 2ohf_A Protein OLA1, GTP-bindi 99.3 6.2E-13 2.1E-17 98.0 4.7 88 8-95 22-131 (396)
200 3zvr_A Dynamin-1; hydrolase, D 99.3 1E-11 3.4E-16 98.1 11.2 120 6-133 49-233 (772)
201 1u0l_A Probable GTPase ENGC; p 99.3 5.6E-13 1.9E-17 95.5 2.6 97 23-132 32-130 (301)
202 3p32_A Probable GTPase RV1496/ 99.2 1E-12 3.4E-17 96.2 0.8 61 57-132 172-232 (355)
203 2www_A Methylmalonic aciduria 99.2 2.2E-11 7.5E-16 88.8 6.7 60 57-131 167-226 (349)
204 1yrb_A ATP(GTP)binding protein 99.2 7.3E-11 2.5E-15 82.5 7.3 69 57-132 109-186 (262)
205 2wsm_A Hydrogenase expression/ 99.2 9.3E-12 3.2E-16 84.9 2.3 110 7-131 29-168 (221)
206 2p67_A LAO/AO transport system 99.1 1.1E-11 3.9E-16 90.1 1.6 61 57-132 149-209 (341)
207 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 4.6E-10 1.6E-14 82.9 6.6 85 8-92 20-127 (392)
208 3ec1_A YQEH GTPase; atnos1, at 98.9 8.5E-11 2.9E-15 86.4 0.2 112 9-132 163-289 (369)
209 3sop_A Neuronal-specific septi 98.9 1.3E-09 4.5E-14 76.8 6.2 24 9-32 3-26 (270)
210 2qag_B Septin-6, protein NEDD5 98.9 1.2E-08 4E-13 76.0 10.9 60 8-67 42-105 (427)
211 2hf9_A Probable hydrogenase ni 98.9 2.9E-11 9.9E-16 82.7 -3.2 28 7-34 37-64 (226)
212 3h2y_A GTPase family protein; 98.9 2.4E-10 8.1E-15 83.9 0.9 113 9-132 161-288 (368)
213 2qm8_A GTPase/ATPase; G protei 98.9 7.3E-10 2.5E-14 80.4 2.3 60 57-131 148-207 (337)
214 2j37_W Signal recognition part 98.8 2.8E-08 9.7E-13 75.5 8.5 116 6-132 99-255 (504)
215 1puj_A YLQF, conserved hypothe 98.7 1.9E-08 6.6E-13 71.3 5.1 59 6-68 118-176 (282)
216 3l82_B F-box only protein 4; T 98.7 2.6E-08 8.9E-13 67.2 4.8 67 65-132 110-178 (227)
217 3cnl_A YLQF, putative uncharac 98.6 1.1E-08 3.9E-13 71.7 2.8 57 9-69 100-156 (262)
218 3szr_A Interferon-induced GTP- 98.5 1.3E-07 4.4E-12 73.7 6.4 24 9-32 46-69 (608)
219 2yv5_A YJEQ protein; hydrolase 98.5 3E-07 1E-11 65.8 6.9 59 67-132 66-125 (302)
220 1f5n_A Interferon-induced guan 98.4 2.8E-07 9.5E-12 71.3 5.4 65 5-69 35-103 (592)
221 1tq4_A IIGP1, interferon-induc 98.4 1.2E-06 4.1E-11 65.1 8.3 112 8-130 69-188 (413)
222 3l2o_B F-box only protein 4; s 98.3 1.2E-07 4.2E-12 66.9 1.4 68 64-132 194-263 (312)
223 2v3c_C SRP54, signal recogniti 98.3 1.3E-06 4.3E-11 65.4 6.0 65 57-132 181-253 (432)
224 3dm5_A SRP54, signal recogniti 98.3 3.3E-06 1.1E-10 63.2 7.7 66 57-132 183-254 (443)
225 3kl4_A SRP54, signal recogniti 98.0 1.1E-06 3.9E-11 65.6 0.9 66 57-132 180-253 (433)
226 1j8m_F SRP54, signal recogniti 97.9 1.3E-05 4.6E-10 57.1 5.4 65 57-132 181-254 (297)
227 3h2y_A GTPase family protein; 97.8 8.5E-06 2.9E-10 59.8 2.8 57 66-132 55-111 (368)
228 3q5d_A Atlastin-1; G protein, 97.8 0.0002 6.7E-09 53.8 9.6 27 5-31 64-90 (447)
229 1bif_A 6-phosphofructo-2-kinas 97.8 9.5E-07 3.3E-11 66.8 -3.0 96 7-107 38-146 (469)
230 2xxa_A Signal recognition part 97.7 0.00016 5.6E-09 54.1 8.6 65 57-132 184-255 (433)
231 1ye8_A Protein THEP1, hypothet 97.7 2.1E-05 7.2E-10 51.9 2.9 22 10-31 2-23 (178)
232 3ec1_A YQEH GTPase; atnos1, at 97.7 1.2E-05 4.2E-10 58.9 1.7 57 66-132 57-113 (369)
233 1puj_A YLQF, conserved hypothe 97.6 3.4E-05 1.2E-09 54.6 3.4 62 61-132 3-65 (282)
234 1kgd_A CASK, peripheral plasma 97.6 2.8E-05 9.6E-10 51.2 2.8 22 10-31 7-28 (180)
235 1knq_A Gluconate kinase; ALFA/ 97.6 4E-05 1.4E-09 49.9 3.4 30 1-30 1-30 (175)
236 1lvg_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 51.5 2.8 22 9-30 5-26 (198)
237 3a00_A Guanylate kinase, GMP k 97.5 4.6E-05 1.6E-09 50.4 2.7 21 11-31 4-24 (186)
238 1t9h_A YLOQ, probable GTPase E 97.5 2.3E-05 8E-10 56.0 1.3 24 9-32 174-197 (307)
239 3tr0_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 50.7 2.9 22 10-31 9-30 (205)
240 1zp6_A Hypothetical protein AT 97.5 6E-05 2.1E-09 49.7 3.0 23 9-31 10-32 (191)
241 1znw_A Guanylate kinase, GMP k 97.5 5.4E-05 1.9E-09 50.9 2.8 23 10-32 22-44 (207)
242 2yv5_A YJEQ protein; hydrolase 97.5 0.00025 8.7E-09 50.5 6.1 22 10-32 167-188 (302)
243 1s96_A Guanylate kinase, GMP k 97.5 6.5E-05 2.2E-09 51.2 2.9 23 10-32 18-40 (219)
244 1z6g_A Guanylate kinase; struc 97.5 6.4E-05 2.2E-09 51.1 2.8 23 10-32 25-47 (218)
245 1uf9_A TT1252 protein; P-loop, 97.5 8.5E-05 2.9E-09 49.4 3.3 31 1-31 1-31 (203)
246 2wwf_A Thymidilate kinase, put 97.4 9E-05 3.1E-09 49.7 3.4 30 1-30 3-32 (212)
247 4gp7_A Metallophosphoesterase; 97.4 7.3E-05 2.5E-09 48.8 2.8 19 10-28 11-29 (171)
248 3c8u_A Fructokinase; YP_612366 97.4 9.7E-05 3.3E-09 49.7 3.4 25 7-31 21-45 (208)
249 3tau_A Guanylate kinase, GMP k 97.4 8.9E-05 3E-09 49.9 3.0 24 9-32 9-32 (208)
250 3ney_A 55 kDa erythrocyte memb 97.4 8.5E-05 2.9E-09 49.8 2.8 23 9-31 20-42 (197)
251 1ex7_A Guanylate kinase; subst 97.4 9.9E-05 3.4E-09 49.0 3.0 21 11-31 4-24 (186)
252 3tif_A Uncharacterized ABC tra 97.4 9.4E-05 3.2E-09 50.9 2.9 23 10-32 33-55 (235)
253 1htw_A HI0065; nucleotide-bind 97.3 0.00011 3.8E-09 47.5 2.8 23 10-32 35-57 (158)
254 2qor_A Guanylate kinase; phosp 97.3 0.00012 4.1E-09 49.0 3.0 23 9-31 13-35 (204)
255 1kag_A SKI, shikimate kinase I 97.3 0.00012 4E-09 47.5 2.9 23 9-31 5-27 (173)
256 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4.1E-09 48.8 3.0 24 9-32 7-30 (207)
257 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.3E-09 47.2 3.0 22 10-31 3-24 (173)
258 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 47.1 2.9 20 9-28 2-21 (179)
259 2pcj_A ABC transporter, lipopr 97.3 0.00012 4.1E-09 50.0 2.7 23 10-32 32-54 (224)
260 2bdt_A BH3686; alpha-beta prot 97.3 0.00013 4.5E-09 48.1 2.8 21 10-30 4-24 (189)
261 2bbw_A Adenylate kinase 4, AK4 97.3 0.00015 5.2E-09 50.0 3.2 22 8-29 27-48 (246)
262 1ly1_A Polynucleotide kinase; 97.3 0.00019 6.3E-09 46.7 3.4 22 9-30 3-24 (181)
263 2onk_A Molybdate/tungstate ABC 97.3 0.00015 5.1E-09 50.1 3.0 23 10-32 26-48 (240)
264 4eun_A Thermoresistant glucoki 97.3 0.00015 5.1E-09 48.4 2.9 22 9-30 30-51 (200)
265 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.5E-09 48.5 3.0 25 7-31 5-29 (211)
266 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.3E-09 48.8 2.9 22 9-30 1-22 (216)
267 1b0u_A Histidine permease; ABC 97.3 0.00015 5.2E-09 50.7 2.9 23 10-32 34-56 (262)
268 3gfo_A Cobalt import ATP-bindi 97.3 0.00015 5.2E-09 51.0 2.9 23 10-32 36-58 (275)
269 3dl0_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 48.6 3.0 22 9-30 1-22 (216)
270 1y63_A LMAJ004144AAA protein; 97.3 0.00019 6.5E-09 47.3 3.2 25 7-31 9-33 (184)
271 2cbz_A Multidrug resistance-as 97.2 0.00016 5.6E-09 49.8 2.9 23 10-32 33-55 (237)
272 1sgw_A Putative ABC transporte 97.2 0.00017 5.8E-09 48.9 2.9 23 10-32 37-59 (214)
273 4g1u_C Hemin import ATP-bindin 97.2 0.00017 5.9E-09 50.5 3.0 23 10-32 39-61 (266)
274 2rcn_A Probable GTPase ENGC; Y 97.2 0.00019 6.6E-09 52.4 3.3 24 10-33 217-240 (358)
275 1nks_A Adenylate kinase; therm 97.2 0.00021 7.2E-09 47.0 3.3 22 9-30 2-23 (194)
276 1g6h_A High-affinity branched- 97.2 0.00017 5.9E-09 50.2 2.9 23 10-32 35-57 (257)
277 2if2_A Dephospho-COA kinase; a 97.2 0.00017 5.9E-09 48.1 2.7 22 9-30 2-23 (204)
278 3cm0_A Adenylate kinase; ATP-b 97.2 0.00028 9.7E-09 46.2 3.7 23 8-30 4-26 (186)
279 1mv5_A LMRA, multidrug resista 97.2 0.00021 7.2E-09 49.4 3.1 23 10-32 30-52 (243)
280 2ff7_A Alpha-hemolysin translo 97.2 0.00021 7.1E-09 49.5 3.1 23 10-32 37-59 (247)
281 3b85_A Phosphate starvation-in 97.2 0.00017 5.8E-09 48.7 2.6 22 10-31 24-45 (208)
282 2olj_A Amino acid ABC transpor 97.2 0.00019 6.5E-09 50.2 2.9 23 10-32 52-74 (263)
283 2pze_A Cystic fibrosis transme 97.2 0.0002 6.7E-09 49.1 2.9 23 10-32 36-58 (229)
284 2eyu_A Twitching motility prot 97.2 0.00019 6.4E-09 50.2 2.8 23 9-31 26-48 (261)
285 3vaa_A Shikimate kinase, SK; s 97.2 0.00025 8.4E-09 47.3 3.3 22 9-30 26-47 (199)
286 3tlx_A Adenylate kinase 2; str 97.2 0.00027 9.1E-09 48.8 3.5 24 7-30 28-51 (243)
287 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.9E-09 47.7 2.8 22 9-30 19-40 (202)
288 2i3b_A HCR-ntpase, human cance 97.2 0.00018 6.2E-09 47.8 2.5 22 10-31 3-24 (189)
289 1qhx_A CPT, protein (chloramph 97.2 0.00022 7.7E-09 46.4 3.0 23 9-31 4-26 (178)
290 1ji0_A ABC transporter; ATP bi 97.2 0.0002 7E-09 49.3 2.9 23 10-32 34-56 (240)
291 1jjv_A Dephospho-COA kinase; P 97.2 0.00028 9.5E-09 47.2 3.5 22 9-30 3-24 (206)
292 1aky_A Adenylate kinase; ATP:A 97.2 0.00023 8E-09 48.1 3.1 23 8-30 4-26 (220)
293 1vpl_A ABC transporter, ATP-bi 97.2 0.00021 7.2E-09 49.8 2.9 23 10-32 43-65 (256)
294 2jaq_A Deoxyguanosine kinase; 97.2 0.00025 8.5E-09 47.1 3.1 21 10-30 2-22 (205)
295 2qi9_C Vitamin B12 import ATP- 97.2 0.00022 7.5E-09 49.5 2.9 23 10-32 28-50 (249)
296 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00023 7.7E-09 49.4 3.0 22 10-31 31-52 (250)
297 3uie_A Adenylyl-sulfate kinase 97.2 0.00022 7.4E-09 47.6 2.8 24 8-31 25-48 (200)
298 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.5E-09 48.5 2.9 24 7-30 6-29 (227)
299 1np6_A Molybdopterin-guanine d 97.2 0.00024 8.1E-09 46.7 2.9 24 8-31 6-29 (174)
300 2zu0_C Probable ATP-dependent 97.2 0.00023 7.9E-09 49.9 3.0 22 10-31 48-69 (267)
301 1u0l_A Probable GTPase ENGC; p 97.2 0.00028 9.6E-09 50.3 3.5 24 10-33 171-194 (301)
302 3ec2_A DNA replication protein 97.2 0.0002 6.8E-09 46.9 2.5 23 9-31 39-61 (180)
303 2ixe_A Antigen peptide transpo 97.2 0.00022 7.7E-09 50.1 2.9 23 10-32 47-69 (271)
304 2ghi_A Transport protein; mult 97.2 0.00025 8.7E-09 49.5 3.1 23 10-32 48-70 (260)
305 2rhm_A Putative kinase; P-loop 97.2 0.00029 9.8E-09 46.4 3.2 23 8-30 5-27 (193)
306 1ukz_A Uridylate kinase; trans 97.1 0.00036 1.2E-08 46.4 3.8 24 7-30 14-37 (203)
307 3lnc_A Guanylate kinase, GMP k 97.1 0.00015 5E-09 49.5 1.8 22 10-31 29-51 (231)
308 2ihy_A ABC transporter, ATP-bi 97.1 0.00027 9.1E-09 49.9 3.1 23 10-32 49-71 (279)
309 3sr0_A Adenylate kinase; phosp 97.1 0.00027 9.1E-09 47.7 3.0 22 9-30 1-22 (206)
310 2v9p_A Replication protein E1; 97.1 0.00024 8.3E-09 50.7 3.0 23 9-31 127-149 (305)
311 1cke_A CK, MSSA, protein (cyti 97.1 0.00027 9.3E-09 47.8 3.1 22 9-30 6-27 (227)
312 2cdn_A Adenylate kinase; phosp 97.1 0.00032 1.1E-08 46.7 3.3 24 7-30 19-42 (201)
313 1tev_A UMP-CMP kinase; ploop, 97.1 0.00035 1.2E-08 46.0 3.4 23 8-30 3-25 (196)
314 2ehv_A Hypothetical protein PH 97.1 0.00027 9.3E-09 48.4 3.0 20 10-29 32-51 (251)
315 1kht_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 46.1 3.1 22 9-30 4-25 (192)
316 2nq2_C Hypothetical ABC transp 97.1 0.00026 9E-09 49.2 2.9 23 10-32 33-55 (253)
317 2yz2_A Putative ABC transporte 97.1 0.00026 8.9E-09 49.6 2.9 23 10-32 35-57 (266)
318 3aez_A Pantothenate kinase; tr 97.1 0.00026 8.9E-09 50.8 2.9 25 6-30 88-112 (312)
319 1e4v_A Adenylate kinase; trans 97.1 0.00027 9.2E-09 47.6 2.8 22 9-30 1-22 (214)
320 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00025 8.6E-09 51.8 2.7 23 10-32 32-54 (359)
321 3trf_A Shikimate kinase, SK; a 97.1 0.00034 1.1E-08 45.9 3.2 23 8-30 5-27 (185)
322 3be4_A Adenylate kinase; malar 97.1 0.0003 1E-08 47.5 3.0 24 7-30 4-27 (217)
323 4a74_A DNA repair and recombin 97.1 0.00025 8.7E-09 47.9 2.5 22 10-31 27-48 (231)
324 2qt1_A Nicotinamide riboside k 97.1 0.00045 1.5E-08 46.2 3.7 25 7-31 20-44 (207)
325 2plr_A DTMP kinase, probable t 97.1 0.0004 1.4E-08 46.3 3.5 23 8-30 4-26 (213)
326 1gvn_B Zeta; postsegregational 97.1 0.00043 1.5E-08 49.0 3.8 24 7-30 32-55 (287)
327 1zak_A Adenylate kinase; ATP:A 97.1 0.00023 7.8E-09 48.2 2.2 24 7-30 4-27 (222)
328 2pjz_A Hypothetical protein ST 97.1 0.00034 1.2E-08 48.9 3.1 23 10-32 32-54 (263)
329 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00037 1.3E-08 51.0 3.4 23 6-28 31-53 (362)
330 2v54_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 46.3 3.1 24 8-31 4-27 (204)
331 1ak2_A Adenylate kinase isoenz 97.0 0.00038 1.3E-08 47.6 3.2 24 7-30 15-38 (233)
332 1z47_A CYSA, putative ABC-tran 97.0 0.00033 1.1E-08 51.1 3.0 23 10-32 43-65 (355)
333 1lw7_A Transcriptional regulat 97.0 0.00026 8.8E-09 51.7 2.4 25 8-32 170-194 (365)
334 2pt5_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 44.7 3.0 21 10-30 2-22 (168)
335 1qf9_A UMP/CMP kinase, protein 97.0 0.00057 1.9E-08 44.9 3.8 22 9-30 7-28 (194)
336 3rlf_A Maltose/maltodextrin im 97.0 0.00035 1.2E-08 51.4 3.0 23 10-32 31-53 (381)
337 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 45.6 2.8 23 8-30 11-33 (180)
338 2vli_A Antibiotic resistance p 97.0 0.00029 9.9E-09 46.0 2.4 24 7-30 4-27 (183)
339 2it1_A 362AA long hypothetical 97.0 0.00036 1.2E-08 51.0 3.0 23 10-32 31-53 (362)
340 2yyz_A Sugar ABC transporter, 97.0 0.00036 1.2E-08 51.0 3.0 23 10-32 31-53 (359)
341 2c95_A Adenylate kinase 1; tra 97.0 0.00014 4.7E-09 48.1 0.7 23 8-30 9-31 (196)
342 3tqc_A Pantothenate kinase; bi 97.0 0.00048 1.6E-08 49.6 3.6 24 6-29 90-113 (321)
343 1odf_A YGR205W, hypothetical 3 97.0 0.00053 1.8E-08 48.6 3.7 25 5-29 28-52 (290)
344 3tui_C Methionine import ATP-b 97.0 0.00039 1.3E-08 50.9 3.0 23 10-32 56-78 (366)
345 2yvu_A Probable adenylyl-sulfa 97.0 0.00063 2.1E-08 44.7 3.8 24 7-30 12-35 (186)
346 2jeo_A Uridine-cytidine kinase 97.0 0.00046 1.6E-08 47.6 3.2 22 9-30 26-47 (245)
347 1v43_A Sugar-binding transport 97.0 0.0004 1.4E-08 51.0 3.0 23 10-32 39-61 (372)
348 1g29_1 MALK, maltose transport 97.0 0.00039 1.3E-08 51.0 3.0 23 10-32 31-53 (372)
349 1xjc_A MOBB protein homolog; s 97.0 0.00048 1.6E-08 45.0 3.1 23 8-30 4-26 (169)
350 2kjq_A DNAA-related protein; s 97.0 0.00035 1.2E-08 44.6 2.4 23 10-32 38-60 (149)
351 2f1r_A Molybdopterin-guanine d 97.0 0.00016 5.4E-09 47.4 0.8 22 10-31 4-25 (171)
352 2x8a_A Nuclear valosin-contain 97.0 0.00039 1.3E-08 48.8 2.8 21 11-31 47-67 (274)
353 2xb4_A Adenylate kinase; ATP-b 97.0 0.00047 1.6E-08 46.8 3.1 21 10-30 2-22 (223)
354 3jvv_A Twitching mobility prot 97.0 0.00038 1.3E-08 50.8 2.8 22 10-31 125-146 (356)
355 1via_A Shikimate kinase; struc 97.0 0.0004 1.4E-08 45.2 2.7 21 10-30 6-26 (175)
356 2bbs_A Cystic fibrosis transme 97.0 0.00044 1.5E-08 49.1 2.9 23 10-32 66-88 (290)
357 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00059 2E-08 47.5 3.5 23 8-30 4-26 (260)
358 3nh6_A ATP-binding cassette SU 97.0 0.00027 9.3E-09 50.5 1.7 23 10-32 82-104 (306)
359 1t9h_A YLOQ, probable GTPase E 96.9 0.0016 5.3E-08 46.6 5.6 51 76-132 82-132 (307)
360 1jbk_A CLPB protein; beta barr 96.9 0.00057 1.9E-08 44.5 3.1 23 9-31 44-66 (195)
361 1rj9_A FTSY, signal recognitio 96.9 0.00045 1.5E-08 49.3 2.8 23 8-30 102-124 (304)
362 2f6r_A COA synthase, bifunctio 96.9 0.00067 2.3E-08 47.8 3.6 24 6-29 73-96 (281)
363 1sxj_E Activator 1 40 kDa subu 96.9 0.0018 6.3E-08 46.7 6.0 20 11-30 39-58 (354)
364 1nn5_A Similar to deoxythymidy 96.9 0.00051 1.8E-08 46.0 2.9 23 8-30 9-31 (215)
365 1ixz_A ATP-dependent metallopr 96.9 0.00049 1.7E-08 47.5 2.8 23 10-32 51-73 (254)
366 2z0h_A DTMP kinase, thymidylat 96.9 0.00055 1.9E-08 45.2 2.9 22 10-31 2-23 (197)
367 1sq5_A Pantothenate kinase; P- 96.9 0.00063 2.1E-08 48.6 3.3 24 7-30 79-102 (308)
368 2pbr_A DTMP kinase, thymidylat 96.9 0.00061 2.1E-08 44.8 3.1 21 10-30 2-22 (195)
369 2p5t_B PEZT; postsegregational 96.9 0.00052 1.8E-08 47.6 2.8 24 7-30 31-54 (253)
370 1rz3_A Hypothetical protein rb 96.9 0.00062 2.1E-08 45.5 3.1 24 7-30 21-44 (201)
371 2ze6_A Isopentenyl transferase 96.9 0.00053 1.8E-08 47.6 2.8 21 10-30 3-23 (253)
372 3gd7_A Fusion complex of cysti 96.9 0.00049 1.7E-08 50.8 2.7 22 10-31 49-70 (390)
373 3pfi_A Holliday junction ATP-d 96.9 0.0029 9.9E-08 45.4 6.7 24 8-31 55-78 (338)
374 3d31_A Sulfate/molybdate ABC t 96.9 0.00033 1.1E-08 50.9 1.7 23 10-32 28-50 (348)
375 3umf_A Adenylate kinase; rossm 96.9 0.00099 3.4E-08 45.2 3.9 21 10-30 31-51 (217)
376 1vht_A Dephospho-COA kinase; s 96.9 0.00081 2.8E-08 45.3 3.5 23 8-30 4-26 (218)
377 2bwj_A Adenylate kinase 5; pho 96.9 0.0005 1.7E-08 45.4 2.4 22 9-30 13-34 (199)
378 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00056 1.9E-08 49.4 2.8 23 10-32 173-195 (330)
379 2vp4_A Deoxynucleoside kinase; 96.8 0.00049 1.7E-08 47.0 2.3 24 8-31 20-43 (230)
380 4e22_A Cytidylate kinase; P-lo 96.8 0.00072 2.5E-08 46.8 3.1 21 9-29 28-48 (252)
381 2gza_A Type IV secretion syste 96.8 0.00057 2E-08 49.9 2.7 24 9-32 176-199 (361)
382 1e6c_A Shikimate kinase; phosp 96.8 0.00073 2.5E-08 43.6 3.0 21 10-30 4-24 (173)
383 2ewv_A Twitching motility prot 96.8 0.00064 2.2E-08 49.9 3.0 23 9-31 137-159 (372)
384 3b9q_A Chloroplast SRP recepto 96.8 0.00064 2.2E-08 48.5 2.9 22 9-30 101-122 (302)
385 1gtv_A TMK, thymidylate kinase 96.8 0.00022 7.4E-09 47.9 0.3 21 10-30 2-22 (214)
386 1uj2_A Uridine-cytidine kinase 96.8 0.00087 3E-08 46.3 3.4 24 7-30 21-44 (252)
387 1zuh_A Shikimate kinase; alpha 96.8 0.00094 3.2E-08 43.0 3.2 22 9-30 8-29 (168)
388 3co5_A Putative two-component 96.8 0.0023 7.9E-08 40.3 4.9 23 9-31 28-50 (143)
389 1in4_A RUVB, holliday junction 96.8 0.0007 2.4E-08 48.8 2.8 23 9-31 52-74 (334)
390 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.4E-08 43.4 3.3 23 8-30 5-27 (179)
391 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00074 2.5E-08 45.6 2.8 21 10-30 25-45 (235)
392 2iyv_A Shikimate kinase, SK; t 96.8 0.00083 2.8E-08 43.9 2.9 21 10-30 4-24 (184)
393 1iy2_A ATP-dependent metallopr 96.8 0.00075 2.6E-08 47.3 2.8 23 10-32 75-97 (278)
394 1p9r_A General secretion pathw 96.8 0.00074 2.5E-08 50.3 2.8 22 10-31 169-190 (418)
395 1oxx_K GLCV, glucose, ABC tran 96.7 0.00034 1.2E-08 51.0 0.9 23 10-32 33-55 (353)
396 1lv7_A FTSH; alpha/beta domain 96.7 0.00099 3.4E-08 46.0 3.1 24 8-31 45-68 (257)
397 3e70_C DPA, signal recognition 96.7 0.0011 3.9E-08 47.8 3.5 24 7-30 128-151 (328)
398 2oap_1 GSPE-2, type II secreti 96.7 0.00083 2.8E-08 51.3 2.8 23 10-32 262-284 (511)
399 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.7E-08 45.6 3.1 23 8-30 9-31 (233)
400 2p65_A Hypothetical protein PF 96.7 0.00074 2.5E-08 43.8 2.2 24 8-31 43-66 (187)
401 4ido_A Atlastin-1; GTPase, GTP 96.7 0.057 2E-06 40.6 12.4 25 5-29 64-88 (457)
402 3bos_A Putative DNA replicatio 96.7 0.0011 3.7E-08 44.9 3.0 24 8-31 52-75 (242)
403 4eaq_A DTMP kinase, thymidylat 96.7 0.0015 5.3E-08 44.6 3.7 25 7-31 25-49 (229)
404 1nij_A Hypothetical protein YJ 96.7 0.0011 3.7E-08 47.6 3.0 25 8-32 4-28 (318)
405 3kta_A Chromosome segregation 96.6 0.0011 3.7E-08 43.3 2.7 21 10-30 28-48 (182)
406 2og2_A Putative signal recogni 96.6 0.0011 3.8E-08 48.4 2.9 23 8-30 157-179 (359)
407 2yhs_A FTSY, cell division pro 96.6 0.0011 3.6E-08 50.5 2.8 22 9-30 294-315 (503)
408 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00096 3.3E-08 50.3 2.5 23 9-31 139-161 (460)
409 3nwj_A ATSK2; P loop, shikimat 96.6 0.001 3.5E-08 46.2 2.5 22 9-30 49-70 (250)
410 2w58_A DNAI, primosome compone 96.6 0.0013 4.6E-08 43.6 3.0 23 9-31 55-77 (202)
411 2cvh_A DNA repair and recombin 96.6 0.0012 4E-08 44.3 2.8 21 10-30 22-42 (220)
412 1cr0_A DNA primase/helicase; R 96.6 0.001 3.5E-08 47.0 2.5 22 10-31 37-58 (296)
413 4fcw_A Chaperone protein CLPB; 96.6 0.0018 6.1E-08 45.9 3.8 24 8-31 47-70 (311)
414 2obl_A ESCN; ATPase, hydrolase 96.6 0.0012 4E-08 48.0 2.8 23 10-32 73-95 (347)
415 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.4E-08 43.7 3.3 23 8-30 25-47 (211)
416 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.3E-08 44.8 2.8 22 10-31 26-47 (243)
417 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.5E-08 46.4 3.0 22 9-30 3-24 (301)
418 3syl_A Protein CBBX; photosynt 96.5 0.0016 5.4E-08 46.1 3.1 25 6-30 65-89 (309)
419 2grj_A Dephospho-COA kinase; T 96.5 0.002 6.7E-08 42.9 3.4 24 8-31 12-35 (192)
420 1d2n_A N-ethylmaleimide-sensit 96.5 0.0022 7.4E-08 44.7 3.8 27 5-31 61-87 (272)
421 3t15_A Ribulose bisphosphate c 96.5 0.0016 5.3E-08 46.2 3.0 25 7-31 35-59 (293)
422 1tue_A Replication protein E1; 96.5 0.0012 4.1E-08 44.5 2.2 23 9-31 59-81 (212)
423 3d3q_A TRNA delta(2)-isopenten 96.5 0.002 6.9E-08 46.6 3.5 23 9-31 8-30 (340)
424 3b9p_A CG5977-PA, isoform A; A 96.5 0.0017 5.8E-08 45.8 3.0 24 8-31 54-77 (297)
425 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0017 5.9E-08 44.7 3.0 24 8-31 39-62 (262)
426 3h4m_A Proteasome-activating n 96.5 0.0016 5.4E-08 45.6 2.8 25 7-31 50-74 (285)
427 1p5z_B DCK, deoxycytidine kina 96.5 0.0013 4.3E-08 45.8 2.2 26 6-31 22-47 (263)
428 2dpy_A FLII, flagellum-specifi 96.4 0.0016 5.4E-08 48.9 2.8 23 10-32 159-181 (438)
429 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0018 6.3E-08 49.8 3.3 23 10-32 49-71 (538)
430 3euj_A Chromosome partition pr 96.4 0.0016 5.4E-08 49.4 2.8 21 10-30 31-51 (483)
431 1njg_A DNA polymerase III subu 96.4 0.0017 5.9E-08 43.7 2.8 21 10-30 47-67 (250)
432 1svm_A Large T antigen; AAA+ f 96.4 0.0016 5.5E-08 47.9 2.8 22 9-30 170-191 (377)
433 3n70_A Transport activator; si 96.4 0.0021 7.3E-08 40.5 2.9 26 7-32 23-48 (145)
434 2chg_A Replication factor C sm 96.4 0.0019 6.4E-08 43.0 2.8 22 10-31 40-61 (226)
435 2qmh_A HPR kinase/phosphorylas 96.4 0.003 1E-07 42.3 3.6 24 9-32 35-58 (205)
436 3b60_A Lipid A export ATP-bind 96.4 0.0018 6.2E-08 50.2 2.9 23 10-32 371-393 (582)
437 4b4t_M 26S protease regulatory 96.4 0.002 6.9E-08 48.2 3.0 25 7-31 214-238 (434)
438 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0024 8.1E-08 40.7 3.0 19 11-29 26-44 (149)
439 3cf0_A Transitional endoplasmi 96.4 0.0021 7E-08 45.7 3.0 24 8-31 49-72 (301)
440 3b5x_A Lipid A export ATP-bind 96.4 0.0021 7.3E-08 49.8 3.2 23 10-32 371-393 (582)
441 3crm_A TRNA delta(2)-isopenten 96.4 0.0031 1.1E-07 45.4 3.8 23 9-31 6-28 (323)
442 1azs_C GS-alpha; complex (lyas 96.4 0.0025 8.4E-08 47.3 3.4 25 5-29 37-61 (402)
443 4b4t_K 26S protease regulatory 96.3 0.0022 7.6E-08 47.9 3.1 24 8-31 206-229 (428)
444 3ozx_A RNAse L inhibitor; ATP 96.3 0.002 6.9E-08 49.6 2.9 23 10-32 27-49 (538)
445 2yl4_A ATP-binding cassette SU 96.3 0.0019 6.5E-08 50.2 2.8 23 10-32 372-394 (595)
446 3foz_A TRNA delta(2)-isopenten 96.3 0.0033 1.1E-07 45.0 3.7 23 9-31 11-33 (316)
447 1nlf_A Regulatory protein REPA 96.3 0.0019 6.7E-08 45.2 2.5 21 10-30 32-52 (279)
448 3zvl_A Bifunctional polynucleo 96.3 0.0021 7.2E-08 47.8 2.8 24 8-31 258-281 (416)
449 1q3t_A Cytidylate kinase; nucl 96.3 0.0027 9.2E-08 43.4 3.1 25 6-30 14-38 (236)
450 3eie_A Vacuolar protein sortin 96.3 0.0031 1.1E-07 45.2 3.5 25 7-31 50-74 (322)
451 3j16_B RLI1P; ribosome recycli 96.3 0.0023 7.8E-08 49.9 3.0 24 10-33 105-128 (608)
452 3qf4_B Uncharacterized ABC tra 96.3 0.0022 7.5E-08 49.9 2.9 23 10-32 383-405 (598)
453 4b4t_L 26S protease subunit RP 96.3 0.0024 8.3E-08 47.8 3.0 25 7-31 214-238 (437)
454 1l8q_A Chromosomal replication 96.3 0.0022 7.6E-08 45.8 2.7 23 9-31 38-60 (324)
455 3ozx_A RNAse L inhibitor; ATP 96.2 0.0024 8.3E-08 49.1 2.9 23 10-32 296-318 (538)
456 3u61_B DNA polymerase accessor 96.2 0.019 6.3E-07 40.9 7.4 21 11-31 51-71 (324)
457 3ake_A Cytidylate kinase; CMP 96.2 0.0034 1.2E-07 41.7 3.2 21 10-30 4-24 (208)
458 3v9p_A DTMP kinase, thymidylat 96.2 0.0027 9.1E-08 43.4 2.6 24 7-30 24-47 (227)
459 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0029 1E-07 45.4 2.9 25 7-31 44-68 (322)
460 3bk7_A ABC transporter ATP-bin 96.2 0.003 1E-07 49.3 3.1 23 10-32 119-141 (607)
461 3gmt_A Adenylate kinase; ssgci 96.2 0.0035 1.2E-07 42.9 3.1 24 7-30 7-30 (230)
462 2dr3_A UPF0273 protein PH0284; 96.2 0.0029 9.8E-08 43.1 2.7 20 10-29 25-44 (247)
463 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0033 1.1E-07 48.4 3.3 23 10-32 314-336 (538)
464 4a82_A Cystic fibrosis transme 96.2 0.0018 6.2E-08 50.2 1.8 23 10-32 369-391 (578)
465 2px0_A Flagellar biosynthesis 96.2 0.0026 9E-08 45.2 2.5 22 8-29 105-126 (296)
466 2qby_A CDC6 homolog 1, cell di 96.2 0.0026 9E-08 46.1 2.6 24 8-31 45-68 (386)
467 2ocp_A DGK, deoxyguanosine kin 96.1 0.0038 1.3E-07 42.7 3.2 23 9-31 3-25 (241)
468 1ofh_A ATP-dependent HSL prote 96.1 0.0032 1.1E-07 44.4 2.8 24 8-31 50-73 (310)
469 3bk7_A ABC transporter ATP-bin 96.1 0.0032 1.1E-07 49.2 3.0 23 10-32 384-406 (607)
470 1sxj_C Activator 1 40 kDa subu 96.1 0.003 1E-07 45.5 2.7 22 10-31 48-69 (340)
471 3cnl_A YLQF, putative uncharac 96.1 0.0012 4E-08 46.2 0.5 57 64-132 4-61 (262)
472 4b4t_J 26S protease regulatory 96.1 0.0027 9.2E-08 47.1 2.4 25 7-31 181-205 (405)
473 1vma_A Cell division protein F 96.1 0.0033 1.1E-07 44.9 2.8 23 8-30 104-126 (306)
474 3qf4_A ABC transporter, ATP-bi 96.1 0.0025 8.5E-08 49.5 2.3 23 10-32 371-393 (587)
475 1fnn_A CDC6P, cell division co 96.1 0.0036 1.2E-07 45.5 3.1 23 10-32 46-68 (389)
476 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0046 1.6E-07 45.1 3.5 22 8-29 24-45 (359)
477 3qf7_A RAD50; ABC-ATPase, ATPa 96.1 0.0037 1.3E-07 45.7 3.0 19 11-29 26-44 (365)
478 3j16_B RLI1P; ribosome recycli 96.0 0.0036 1.2E-07 48.8 3.0 23 11-33 381-403 (608)
479 2r8r_A Sensor protein; KDPD, P 96.0 0.0056 1.9E-07 41.8 3.6 25 5-29 3-27 (228)
480 1c9k_A COBU, adenosylcobinamid 96.0 0.0043 1.5E-07 40.9 2.9 21 11-31 2-22 (180)
481 1a7j_A Phosphoribulokinase; tr 96.0 0.0023 7.8E-08 45.3 1.7 22 9-30 6-27 (290)
482 4edh_A DTMP kinase, thymidylat 96.0 0.0052 1.8E-07 41.5 3.4 24 7-30 5-28 (213)
483 3tqf_A HPR(Ser) kinase; transf 96.0 0.005 1.7E-07 40.3 2.9 24 9-32 17-40 (181)
484 1pzn_A RAD51, DNA repair and r 95.9 0.0037 1.3E-07 45.4 2.5 23 10-32 133-155 (349)
485 3exa_A TRNA delta(2)-isopenten 95.9 0.0047 1.6E-07 44.3 3.0 22 10-31 5-26 (322)
486 2r62_A Cell division protease 95.9 0.0017 5.8E-08 45.1 0.7 23 9-31 45-67 (268)
487 3uk6_A RUVB-like 2; hexameric 95.9 0.0043 1.5E-07 45.0 2.8 23 9-31 71-93 (368)
488 1sxj_D Activator 1 41 kDa subu 95.9 0.0043 1.5E-07 44.6 2.8 22 10-31 60-81 (353)
489 3a8t_A Adenylate isopentenyltr 95.9 0.0065 2.2E-07 43.9 3.6 23 9-31 41-63 (339)
490 4b4t_H 26S protease regulatory 95.9 0.0039 1.3E-07 47.0 2.5 25 7-31 242-266 (467)
491 4b4t_I 26S protease regulatory 95.9 0.0047 1.6E-07 46.1 2.9 24 8-31 216-239 (437)
492 2v1u_A Cell division control p 95.9 0.0038 1.3E-07 45.3 2.4 25 7-31 43-67 (387)
493 2qp9_X Vacuolar protein sortin 95.9 0.0047 1.6E-07 44.9 2.8 24 8-31 84-107 (355)
494 3pxg_A Negative regulator of g 95.9 0.0051 1.7E-07 46.5 3.1 24 8-31 201-224 (468)
495 3hws_A ATP-dependent CLP prote 95.9 0.0048 1.7E-07 44.9 2.9 25 7-31 50-74 (363)
496 2qgz_A Helicase loader, putati 95.9 0.0053 1.8E-07 43.8 3.0 24 8-31 152-175 (308)
497 3ld9_A DTMP kinase, thymidylat 95.8 0.0072 2.5E-07 41.2 3.5 25 6-30 19-43 (223)
498 3d8b_A Fidgetin-like protein 1 95.8 0.0051 1.7E-07 44.7 2.9 25 7-31 116-140 (357)
499 2z4s_A Chromosomal replication 95.8 0.0048 1.6E-07 46.2 2.7 23 9-31 131-153 (440)
500 1um8_A ATP-dependent CLP prote 95.8 0.0045 1.5E-07 45.2 2.5 24 8-31 72-95 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.4e-32 Score=188.72 Aligned_cols=141 Identities=35% Similarity=0.646 Sum_probs=113.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+.+.+||+++|++|+|||||+++|.+..+...+.++.+.++.......++..+.+.||||+|++.+..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34568999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeeccccchhhhhhccc
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGEEGSSMVCLQRKY 153 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e~~~~~~~~~~~~ 153 (156)
++|||++++.+|+.+..|+..+...... ++|++|||||+|+.++ +++..++... ++...+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~--~a~~~~~ 150 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGER--KAKELNV 150 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHH--HHHHHTC
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhh--HHHHhCC
Confidence 9999999999999999999999877643 7899999999999876 6666665443 3444443
No 2
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=167.50 Aligned_cols=127 Identities=40% Similarity=0.717 Sum_probs=110.6
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|+....+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 55667788999999999999999999999998887788888888888888889988999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++.++..+..|+..+..... +.|+++|+||+|+.+.
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER 128 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh
Confidence 9999999999999999999999998877653 7899999999999865
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=7.1e-30 Score=170.55 Aligned_cols=128 Identities=41% Similarity=0.766 Sum_probs=87.1
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 55566778999999999999999999999888777777787777777778888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK 128 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccCCcc
Confidence 99999999999999999999999988776432 7899999999999875
No 4
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=4.7e-29 Score=166.58 Aligned_cols=134 Identities=30% Similarity=0.564 Sum_probs=114.2
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
+....+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566789999999999999999999999888877778777665 66677888888999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
|++++|||++++.+++.+..|+..+....... +.|+++|+||+|+.++ +.+..++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~ 145 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQ 145 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHH
Confidence 99999999999999999999999887765433 7899999999999875 4444443
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=7.1e-29 Score=167.27 Aligned_cols=126 Identities=38% Similarity=0.751 Sum_probs=114.1
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
......+||+++|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34456799999999999999999999999988888888888888888888998899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK 136 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc
Confidence 999999999999999999999988776543 7899999999999876
No 6
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=6.9e-29 Score=168.85 Aligned_cols=128 Identities=38% Similarity=0.728 Sum_probs=113.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|++.....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55556778999999999999999999999998887778888877777788888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK 128 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence 99999999999999999999999988766532 7899999999999875
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=4e-29 Score=167.19 Aligned_cols=128 Identities=39% Similarity=0.741 Sum_probs=113.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|++..++.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 55666778999999999999999999999998887778888877777888888888899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD 130 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence 99999999999999999999999888766432 7899999999999754
No 8
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=1.5e-28 Score=163.85 Aligned_cols=130 Identities=32% Similarity=0.525 Sum_probs=110.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4579999999999999999999998888777778877666 666778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
+|||++++.+++.+..|+..+....... +.|+++|+||+|+.++ +.+..++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~ 133 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEE 133 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECccchhc--ceecHHH
Confidence 9999999999999999999988776533 7899999999999766 4444443
No 9
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=1.8e-28 Score=163.24 Aligned_cols=126 Identities=36% Similarity=0.688 Sum_probs=110.6
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
..+.+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 34566799999999999999999999999888777777777777777888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc
Confidence 99999999999999999999998887653 27899999999999865
No 10
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.4e-29 Score=168.28 Aligned_cols=124 Identities=40% Similarity=0.695 Sum_probs=111.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999988877888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER 146 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence 9999999999999999999988776532 7899999999999764
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.1e-28 Score=163.86 Aligned_cols=126 Identities=37% Similarity=0.706 Sum_probs=111.3
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
....+.++|+++|.+++|||||+++|.+..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34556899999999999999999999999887777778777777777888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence 999999999999999999999888776532 7899999999999764
No 12
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.6e-29 Score=166.81 Aligned_cols=127 Identities=40% Similarity=0.713 Sum_probs=110.7
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
++..++.+||+++|++|+|||||+++|.+..+.....++.+.++.......++..+.+.+|||||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence 34556789999999999999999999999988777788888888777787888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++|||++++.++..+..|+..+..... .+.|+++|+||+|+.++
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc
Confidence 999999999999999999999998877653 27899999999999754
No 13
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=4.1e-29 Score=166.31 Aligned_cols=132 Identities=70% Similarity=1.221 Sum_probs=98.4
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCcccccchhhhhee
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR 79 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~ 79 (156)
|+....+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.++ +....+.+|||||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 56667788999999999999999999999988877777777776766666665 45578999999999999999999999
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|||++++.+++.+..|+..+..........+.|+++|+||+|+.+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 99999999999999999999999999888775444458899999999999643
No 14
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=1.1e-28 Score=164.14 Aligned_cols=128 Identities=29% Similarity=0.522 Sum_probs=110.1
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|+....+.++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5566777899999999999999999999999887777777766554 566778888899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKADLESQ 129 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECGGGGGG
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence 999999999999999999999998886655432 7899999999999865
No 15
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=1.7e-28 Score=161.56 Aligned_cols=124 Identities=41% Similarity=0.730 Sum_probs=110.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+.+.++|+++|++|+|||||+++|.+..+...+.++.+.+.......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45679999999999999999999999888777778888887777888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... ++.|+++|+||+|+.++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc
Confidence 999999999999999999988876643 27899999999999764
No 16
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=1.2e-28 Score=165.60 Aligned_cols=125 Identities=38% Similarity=0.735 Sum_probs=110.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-chhhhheecccE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADC 83 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~ 83 (156)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4457999999999999999999999988877777888777777788888888999999999999888 888899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+..|+..+....... +.|+++|+||+|+.+.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLAN---DIPRILVGNKCDLRSA 142 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCS---CCCEEEEEECTTCGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence 999999999999999999999988776333 7899999999999765
No 17
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=4.7e-28 Score=160.73 Aligned_cols=128 Identities=54% Similarity=1.050 Sum_probs=111.3
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 45678999999999999999999999988877778888888878888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+++|||++++.++..+..|+..+..........+.|+++|+||+|+.+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 999999999999999999999988777644445889999999999973
No 18
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=1.5e-28 Score=167.02 Aligned_cols=131 Identities=81% Similarity=1.315 Sum_probs=112.3
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|++...+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 66677788999999999999999999999998887778888888888888888888899999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|++++|||++++.++..+..|+..+..........+.|+++|+||+|+.+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 999999999999999999999999888776543334789999999999984
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=3.8e-28 Score=160.02 Aligned_cols=124 Identities=40% Similarity=0.741 Sum_probs=111.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+.....++.+.+.......+.+....+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45679999999999999999999999988777788888888788888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... ++.|+++|+||+|+.+.
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc
Confidence 999999999999999999888876533 27899999999999865
No 20
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-28 Score=163.88 Aligned_cols=125 Identities=35% Similarity=0.699 Sum_probs=111.3
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 34567999999999999999999999998877777888877777778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+.++
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc
Confidence 9999999999999999999998876642 27899999999999875
No 21
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=3.7e-28 Score=163.22 Aligned_cols=124 Identities=36% Similarity=0.715 Sum_probs=110.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....++|+++|.+++|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 44579999999999999999999999988777777887777777777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc
Confidence 999999999999999999988877642 27899999999999765
No 22
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5e-28 Score=159.31 Aligned_cols=122 Identities=40% Similarity=0.717 Sum_probs=110.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999998877778888888877888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGS
T ss_pred EEecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc
Confidence 9999999999999999988887653 27899999999999765
No 23
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=1.6e-28 Score=165.30 Aligned_cols=125 Identities=40% Similarity=0.746 Sum_probs=107.1
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45567999999999999999999999998877777777777777778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~----~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR 141 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccCCc
Confidence 99999999999999999999888766432 7899999999999764
No 24
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=167.46 Aligned_cols=124 Identities=35% Similarity=0.657 Sum_probs=102.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34579999999999999999999999888777777777777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc
Confidence 999999999999999999998877653 27899999999999865
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.4e-28 Score=162.22 Aligned_cols=124 Identities=40% Similarity=0.745 Sum_probs=103.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988777778888777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc
Confidence 9999999999999999999888766532 6899999999999865
No 26
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.4e-28 Score=160.17 Aligned_cols=125 Identities=39% Similarity=0.688 Sum_probs=102.2
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
..++.++|+++|.+++|||||+++|.+..+. ..+.++.+.++.......++..+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3466799999999999999999999988874 455677777777777778888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc
Confidence 99999999999999999999998877654 27899999999999875
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=2.1e-28 Score=160.97 Aligned_cols=122 Identities=38% Similarity=0.806 Sum_probs=109.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888777888877777788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+++.+..|+..+..... +.|+++|+||+|+.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD 124 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc
Confidence 99999999999999999998887662 7899999999999865
No 28
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=3.5e-28 Score=161.37 Aligned_cols=123 Identities=39% Similarity=0.734 Sum_probs=110.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999998888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+..|+..+...... +.|+++|+||+|+.++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTDLSDK 134 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECGGGGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECCccccc
Confidence 999999999999999999888776532 7899999999999765
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.9e-28 Score=161.42 Aligned_cols=127 Identities=40% Similarity=0.723 Sum_probs=111.8
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
.....+.++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 44556679999999999999999999999988877788888888788888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|++++|||++++.++..+..|+..+...... .+.|+++|+||+|+.+
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKEN 135 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCSC---SCCEEEEEEECTTSSS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCc---CCCcEEEEEECCcCcc
Confidence 9999999999999999999998888654422 3789999999999954
No 30
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=169.62 Aligned_cols=132 Identities=38% Similarity=0.749 Sum_probs=108.2
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+||+++|.+++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34567999999999999999999999988877777777777778888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
+++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++ +.+..++
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~ 160 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTT 160 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHH
Confidence 9999999999999999999888865443 27899999999999876 4444443
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=1e-27 Score=161.64 Aligned_cols=131 Identities=31% Similarity=0.553 Sum_probs=109.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|++|+|||||+++|.+..+...+.++.+..+. .....++..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 455799999999999999999999999887777777766554 4566788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 85 VLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 85 l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.++..+.+..++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~ 151 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQE 151 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHH
Confidence 999999999999997 678877776543 7899999999999875434444443
No 32
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=5e-28 Score=162.97 Aligned_cols=125 Identities=34% Similarity=0.675 Sum_probs=110.6
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.++|+++|.+|+|||||+++|.+..+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999998887777887777777778888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc
Confidence 9999999999999999889888865432 37899999999999765
No 33
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=163.31 Aligned_cols=126 Identities=41% Similarity=0.729 Sum_probs=104.9
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
......++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 44566799999999999999999999998887777788878888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD 146 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc
Confidence 999999999999999999998887765432 7899999999999765
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=8.9e-28 Score=161.32 Aligned_cols=126 Identities=40% Similarity=0.677 Sum_probs=108.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCe---------EEEEEEEeCCCcccccch
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSL 73 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 73 (156)
.....++|+++|++|+|||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4566799999999999999999999998887777777777766 555666654 689999999999999999
Q ss_pred hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+++.+|++++|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE---NPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS---SCCEEEEEECTTCGGG
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence 9999999999999999999999999999999887765422 7899999999999764
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=5.5e-28 Score=159.22 Aligned_cols=121 Identities=40% Similarity=0.785 Sum_probs=102.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
..++|+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998877777777777777777778878899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|||++++.++..+..|+..+...... +.|+++|+||+|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET 122 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECccCCc
Confidence 99999999999999999988776532 789999999999943
No 36
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=165.29 Aligned_cols=124 Identities=38% Similarity=0.710 Sum_probs=100.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
.+..+||+++|++++|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777777777777777778888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... .+.|+++|+||+|+.++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE 145 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc
Confidence 999999999999999999988876654 27899999999999754
No 37
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=164.33 Aligned_cols=123 Identities=35% Similarity=0.539 Sum_probs=101.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+||+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988877777776655 555555666789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+++.+..|+..+...... .+.|+++|+||+|+.++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGK---TRVPVVLVGNKADLSPE 144 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccCccc
Confidence 999999999999999999988765432 37899999999999865
No 38
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=160.85 Aligned_cols=131 Identities=25% Similarity=0.445 Sum_probs=104.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|++|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||+|++.+... ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 45579999999999999999999999888777777777655 445667888899999999999888764 6688999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
++|||++++.+++.+..|+..+...... ...+.|+++|+||+|+.++ +++..+
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~ 148 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKA 148 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHH
Confidence 9999999999999999999988876421 0127899999999999765 444443
No 39
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.8e-28 Score=166.34 Aligned_cols=124 Identities=39% Similarity=0.741 Sum_probs=104.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999988877778887777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc
Confidence 999999999999999999998877643 27899999999999865
No 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=1.5e-27 Score=156.52 Aligned_cols=122 Identities=31% Similarity=0.593 Sum_probs=105.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+++|++|+|||||++++.+..+...+.++.+. .......+++....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4589999999999999999999988877766666654 335667778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.+++.+..|+..+....... +.|+++|+||+|+.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYE---KVPVILVGNKVDLESE 123 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTS---CCCEEEEEECGGGGGG
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECCccccc
Confidence 999999999999999999888765432 7899999999999754
No 41
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.1e-29 Score=168.22 Aligned_cols=125 Identities=35% Similarity=0.690 Sum_probs=110.4
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..+..+||+++|++++|||||+++|.+..+.....++.+.+.........+..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34567999999999999999999999988877777777777777777777777899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.+++.+..|+..+...... +.|+++|+||+|+.++
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWD----NAQVILVGNKCDMEEE 143 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence 99999999999999999999988775532 7899999999999765
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=5.9e-28 Score=163.32 Aligned_cols=132 Identities=20% Similarity=0.351 Sum_probs=103.5
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-hhhhheeccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGAD 82 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 82 (156)
.....++|+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345679999999999999999999975443322334444555566677888889999999999987764 7778889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
++++|||++++.+|..+..|+..+...... .+.|+++|+||+|+.++ +.+..+
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~ 151 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLE 151 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHH
Confidence 999999999999999999999988765432 27899999999999875 444443
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=8.1e-28 Score=158.47 Aligned_cols=128 Identities=21% Similarity=0.353 Sum_probs=94.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc-hhhhheecccEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL 86 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~l~ 86 (156)
.+||+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999987766555555555666677777889899999999999988865 77777899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
|||++++.++..+..|+..+....... +.|+++|+||+|+.++ +.+..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~ 130 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHH---DLPVILVGNKSDLARS--REVSLE 130 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTS---CCCEEEEEECTTCGGG--CCSCHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCC---CCCEEEEeeCcchhhc--ccCCHH
Confidence 999999999999999999988765432 7899999999999865 444444
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=1.5e-27 Score=156.77 Aligned_cols=122 Identities=30% Similarity=0.602 Sum_probs=105.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+++|++|+|||||+++|.+..+...+.++.+... .....+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999887777777766544 4555677778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTE---DVPMILVGNKCDLEDE 123 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCS---CCCEEEEEECTTCGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcC---CCcEEEEEECcccccc
Confidence 999999999999999998888765432 7899999999999765
No 45
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=2e-27 Score=156.00 Aligned_cols=122 Identities=31% Similarity=0.614 Sum_probs=103.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+++|.+|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 468999999999999999999999887776666665544 4455678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK 124 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc
Confidence 999999999999999999988776533 7899999999999765
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=2.1e-27 Score=158.65 Aligned_cols=124 Identities=31% Similarity=0.598 Sum_probs=106.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34569999999999999999999999887776666665544 45566788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK 138 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc
Confidence 99999999999999999999988776533 7899999999999765
No 47
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=1.5e-27 Score=163.43 Aligned_cols=121 Identities=23% Similarity=0.499 Sum_probs=104.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....+||+++|++++|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||+|++.+...+..+++.+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34569999999999999999999999988877788877665 45556677788999999999999999999999999999
Q ss_pred EEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++.++.. +..|+..+..... +.|+++|+||+|+.+
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcc
Confidence 99999999999998 6889998887653 789999999999976
No 48
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=8.8e-28 Score=162.71 Aligned_cols=123 Identities=36% Similarity=0.669 Sum_probs=98.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 34569999999999999999999999887777777777777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++.++..+..|+..+...... +.|+++|+||+|+.+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRD 147 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECccccc
Confidence 9999999999999999998888765432 789999999999963
No 49
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=159.85 Aligned_cols=124 Identities=31% Similarity=0.598 Sum_probs=107.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 34569999999999999999999999887777777766544 45567788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK 134 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc
Confidence 99999999999999999999988775433 7899999999999865
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=156.31 Aligned_cols=128 Identities=27% Similarity=0.443 Sum_probs=95.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--ccchhhhheecccEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC 84 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ 84 (156)
+.++|+++|++|+|||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||||+.. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 568999999999999999999998876543 33455566666777888888999999999887 566677788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.++ +++..+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~ 132 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVE 132 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHH
Confidence 999999999999999999888876432 227899999999999876 444433
No 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=6.5e-27 Score=159.37 Aligned_cols=125 Identities=22% Similarity=0.525 Sum_probs=104.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 80 (156)
|.+.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 445566789999999999999999999999988777777776554 4456667778999999999999999999999999
Q ss_pred ccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|++++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRT 146 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhcc
Confidence 9999999999999999998 688888876643 789999999999975
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=1.3e-26 Score=155.05 Aligned_cols=123 Identities=31% Similarity=0.578 Sum_probs=104.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|++|+|||||+++|.+..+...+.++.. +........++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999887776666664 444566677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+..|+..+....... +.|+++|+||+|+.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSE---DVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECccCccc
Confidence 9999999999999999999988765433 7899999999999853
No 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=4.5e-27 Score=157.60 Aligned_cols=128 Identities=23% Similarity=0.385 Sum_probs=104.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.+.+.+||+++|++|+|||||+++|.+..+...+.++.+ .+...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 345679999999999999999999999988776666633 334677788988999999999988766 7788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeecc
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFGE 141 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~e 141 (156)
+++|||++++.+|+.+..|+..+..... ..+.|+++|+||+|+.+.+.+.+..++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~ 143 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSR 143 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHH
Confidence 9999999999999999999998876532 137899999999999654334444443
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4.6e-27 Score=160.35 Aligned_cols=121 Identities=40% Similarity=0.785 Sum_probs=107.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998887777788877777778888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+|||++++.++..+..|+..+...... +.|+++|+||+|+.
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~ 138 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDME 138 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTT----CSEEEEEEECTTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCc
Confidence 999999999999999999888776542 68999999999994
No 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=3e-27 Score=155.29 Aligned_cols=126 Identities=24% Similarity=0.384 Sum_probs=84.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.+||+++|++|+|||||+++|.+...... .++.+.++ .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997765432 34444443 45567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
||++++.+++.+..|+..+...... .+.|+++|+||+|+.++ +.+..+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~ 127 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVD 127 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccccccc--cccCHH
Confidence 9999999999999999888765432 37899999999999876 444433
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=1.1e-26 Score=155.43 Aligned_cols=123 Identities=22% Similarity=0.523 Sum_probs=104.5
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 456679999999999999999999999888777777776554 4456677788899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcc
Confidence 9999999999999998 688888876543 7899999999999753
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=7.3e-28 Score=159.91 Aligned_cols=127 Identities=35% Similarity=0.578 Sum_probs=105.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheecccE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999998887665666766666677777766 57899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.+++.+..|+..+..+..... ...|+++|+||+|+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQPLVALVGNKIDLEHM 130 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT-CCCEEEEEEECGGGGGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC-CCCeEEEEEEccccccc
Confidence 9999999999999999999888876532110 13348999999999764
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=8.8e-27 Score=157.56 Aligned_cols=118 Identities=36% Similarity=0.729 Sum_probs=103.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeE----------------------------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRL---------------------------- 56 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (156)
.+..++|+++|++++|||||+++|.+..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998887777887777777777666544
Q ss_pred ---------EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 57 ---------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 57 ---------~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
..+.+|||||++.+...+..+++.+|++++|||++++.++..+..|+..+.... +.|+++|+||+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~ 157 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI 157 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence 789999999999999999999999999999999999999999999998887654 47999999999
Q ss_pred C
Q 031598 128 D 128 (156)
Q Consensus 128 D 128 (156)
|
T Consensus 158 D 158 (208)
T 3clv_A 158 D 158 (208)
T ss_dssp T
T ss_pred C
Confidence 9
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=9.8e-28 Score=164.33 Aligned_cols=125 Identities=42% Similarity=0.724 Sum_probs=104.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe----------EEEEEEEeCCCcccccchh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLG 74 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~ 74 (156)
.++.+||+++|++++|||||+++|.+..+...+.++.+.++....+.+++. .+.+.+|||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 456799999999999999999999998877666677666666666666655 6899999999999999999
Q ss_pred hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++.+|++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY---CENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT---TTCCEEEEEEECTTCGGG
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCCEEEEEECCccccc
Confidence 9999999999999999999999998888776643221 137899999999999764
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-27 Score=158.49 Aligned_cols=123 Identities=28% Similarity=0.527 Sum_probs=104.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 34569999999999999999999999988777777776544 45566788889999999999887 77888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+..|+..+....... +.|+++|+||+|+.++
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPK---NVTLILVGNKADLDHS 147 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTS---CCCEEEEEECGGGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCC---CCcEEEEEECcccccc
Confidence 99999999999999999998888765432 7899999999999865
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=1.1e-27 Score=162.66 Aligned_cols=125 Identities=28% Similarity=0.484 Sum_probs=77.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEECCe--EEEEEEEeCCCcccccchhhhheecc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
...++|+++|++|+|||||+++|.+. .+...+.++.+.+.....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999988 666666777766666777777776 78999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
|++++|||++++.++..+..|+..+...... ...+.|+++|+||+|+.+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccch
Confidence 9999999999999999999999998876541 012789999999999987
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=4.4e-26 Score=153.57 Aligned_cols=122 Identities=31% Similarity=0.590 Sum_probs=105.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....++|+++|++++|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34679999999999999999999999887776677765544 44566677788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccc
Confidence 9999999999999987 78888877643 7899999999999874
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.94 E-value=2.4e-26 Score=152.79 Aligned_cols=127 Identities=19% Similarity=0.353 Sum_probs=100.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+||+++|++|+|||||+++|.+..+.. +.++.+..+ ...+.+++..+.+.+|||+|++. ..+++.+|+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 467999999999999999999999988765 566665443 56667788889999999999875 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
+|||++++.++..+..|+..+...... ...+.|+++|+||+|+.+...+.+..+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~ 131 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDA 131 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHH
Confidence 999999999999999887766655432 223789999999999964322444433
No 64
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=1.1e-26 Score=159.74 Aligned_cols=124 Identities=30% Similarity=0.670 Sum_probs=110.7
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+||+++|.+|+|||||+++|....+...+.++.+.+........++..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45567999999999999999999987766666667777788888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+..|+..+..... +.|+++|+||+|+.+.
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccc
Confidence 9999999999999999999999988754 7899999999999865
No 65
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=5.8e-27 Score=160.60 Aligned_cols=125 Identities=35% Similarity=0.616 Sum_probs=104.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-eEEEEEEEeCCCcccccchhhhheeccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
.....+||+++|.+|+|||||+++|.+..+...+.++.+.+.........+ ..+.+.+|||||++.+...+..++..+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345679999999999999999999998887776677776666555554433 3478999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.++..+..|+..+...... +.|+++|+||+|+.+.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC--
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc
Confidence 999999999999999999999998877653 6899999999999865
No 66
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.94 E-value=5.4e-26 Score=153.91 Aligned_cols=123 Identities=30% Similarity=0.532 Sum_probs=97.6
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999998887766666665433 4556778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+. .|+..+..... +.|+++|+||+|+.++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLRED 139 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhc
Confidence 99999999999999986 78888876643 7899999999999763
No 67
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=4.4e-26 Score=153.88 Aligned_cols=126 Identities=22% Similarity=0.405 Sum_probs=98.6
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecc
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 81 (156)
.......+|+++|.+++|||||+++|.+..+.. .+.++.+... ..+.... +.+.+|||||++.+...+..+++.+
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence 345567999999999999999999999998877 6677776443 3334344 7899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASP----SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++|||++++.+|..+..|+..+...... ....+.|+++|+||+|+.+.
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999999999999998888887654210 01126799999999999876
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=1.2e-25 Score=147.08 Aligned_cols=121 Identities=29% Similarity=0.552 Sum_probs=104.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEE
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v 87 (156)
.++|+++|.+|+|||||++++.+..+.....++.+.. .......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999888776666666543 355566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 88 YDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++++.++..+..|+..+....... +.|+++|+||+|+.+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAAR 123 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSCC
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhhc
Confidence 99999999999999999888765432 6899999999999863
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=1e-25 Score=152.80 Aligned_cols=123 Identities=27% Similarity=0.571 Sum_probs=104.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
.....+||+++|.+|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 3455799999999999999999999998887776777665543 345678888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+ ..|...+..... +.|+++|+||+|+.++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcC
Confidence 9999999999999998 677777766543 7899999999999875
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.94 E-value=1.6e-25 Score=150.32 Aligned_cols=123 Identities=31% Similarity=0.551 Sum_probs=94.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|.+|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 4456999999999999999999999888776666665443 345666788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
++|||++++.++..+..|+..+....... +.|+++|+||+|+.+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc
Confidence 99999999999999999998887765432 689999999999986
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.8e-26 Score=151.18 Aligned_cols=123 Identities=26% Similarity=0.466 Sum_probs=102.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+++|++|+|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999887666666665443 3445667778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.+++.+..|+..+...... ..+.|+++|+||+|+.+.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS 124 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc
Confidence 99999999999988888887765431 126899999999999765
No 72
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=1.2e-25 Score=150.12 Aligned_cols=121 Identities=29% Similarity=0.601 Sum_probs=104.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4579999999999999999999998887766666665443 455667888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEccccccc
Confidence 999999999999986 68888776543 7899999999999764
No 73
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.94 E-value=8.4e-26 Score=154.69 Aligned_cols=121 Identities=34% Similarity=0.614 Sum_probs=84.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+...+.++....+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4569999999999999999999998887766666664433 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKD 153 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhcc
Confidence 999999999999986 68888876543 7899999999999875
No 74
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=6.4e-26 Score=154.78 Aligned_cols=122 Identities=34% Similarity=0.643 Sum_probs=103.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 34679999999999999999999999887777677766444 44556777788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhC
Confidence 9999999999999986 78888876643 7899999999999765
No 75
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-26 Score=156.09 Aligned_cols=130 Identities=21% Similarity=0.366 Sum_probs=99.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheecc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGA 81 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 81 (156)
....+||+++|++|+|||||+++|.+... ... .++.+.+.....+.+++..+.+.+|||+|+.. ...+...+++.+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 44569999999999999999999996432 222 23345555566677888888999999999876 455666778899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCCceeeeec
Q 031598 82 DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGNSRVVCFG 140 (156)
Q Consensus 82 ~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 140 (156)
+++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+. +++..+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~ 166 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVS 166 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHH
Confidence 999999999999999999988887764322 127899999999999764 444433
No 76
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=2e-25 Score=149.80 Aligned_cols=121 Identities=25% Similarity=0.464 Sum_probs=101.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
.++.++|+++|.+|+|||||+++|.+..+...+.++.+.++.. +...+ +.+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3457999999999999999999999988776667777665432 33444 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccC
Confidence 999999999999999888887764322 127899999999999865
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.2e-25 Score=151.76 Aligned_cols=121 Identities=26% Similarity=0.560 Sum_probs=98.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...+||+++|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45689999999999999999999998887766666665543 33567888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNL-NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+ ..|+..+..... +.|+++|+||+|+.+.
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhcc
Confidence 99999999999998 678877766543 7899999999999765
No 78
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=4e-25 Score=147.84 Aligned_cols=119 Identities=21% Similarity=0.460 Sum_probs=99.0
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||++++.+.. ...+.++.+.. ...+.+++ ..+++|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887 55556666543 34455554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGA 134 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCC
Confidence 99999999999999888887765422 227899999999999875
No 79
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=2.3e-25 Score=151.48 Aligned_cols=122 Identities=29% Similarity=0.571 Sum_probs=102.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|.+|+|||||+++|.+..+...+.++.+ +.......+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34569999999999999999999998887766666664 34455666778888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccc
Confidence 9999999999999986 78888776652 7899999999999875
No 80
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.93 E-value=6.9e-25 Score=147.29 Aligned_cols=123 Identities=20% Similarity=0.344 Sum_probs=99.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
..+.++|+++|.+|+|||||+++|.+.. +...+.++.+. ....+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3456999999999999999999999877 45555566553 344455554 789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++.++..+..|+..+...... ...+.|+++|+||+|+.++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC
Confidence 99999999999999998888888765322 0137899999999999864
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=5.4e-25 Score=148.49 Aligned_cols=125 Identities=26% Similarity=0.461 Sum_probs=104.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
....++|+++|.+++|||||+++|.+..+...+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45679999999999999999999999887766666665443 34456678888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+...... ..+.|+++|+||+|+.+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSSC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCcc
Confidence 9999999999999988888777665432 126799999999999763
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=3e-25 Score=145.44 Aligned_cols=116 Identities=18% Similarity=0.415 Sum_probs=94.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEE
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~ 88 (156)
+||+++|++|+|||||+++|.+..+.. +.++.+.. ...+...+ +.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 35555432 33344333 78999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 89 DVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++.++..+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHHhchh---hcCCeEEEEEECcCCcCC
Confidence 99999999998888887764322 237899999999999765
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=4.4e-26 Score=151.80 Aligned_cols=122 Identities=33% Similarity=0.630 Sum_probs=89.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.+||+++|++|+|||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 34569999999999999999999998887666566554332 22233455667889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.+++.+. .|+..+..... +.|+++|+||+|+.++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcC
Confidence 9999999999999987 68888876643 7899999999999765
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.93 E-value=1.7e-24 Score=142.63 Aligned_cols=119 Identities=21% Similarity=0.370 Sum_probs=97.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|++|+|||||+++|.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 456999999999999999999999887643 45555433 34455554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++.....|+..+..... ..+.|+++|+||+|+.+.
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCC
Confidence 99999999999998888877764322 137899999999999875
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=1.8e-24 Score=145.53 Aligned_cols=119 Identities=23% Similarity=0.388 Sum_probs=97.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||++++.+..+. .+.++.+.+ ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 44679999999999999999999988764 345555543 44556666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC
Confidence 99999999999999988888765422 127899999999999863
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=4.1e-25 Score=147.44 Aligned_cols=120 Identities=23% Similarity=0.369 Sum_probs=96.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
..+.++|+++|.+|+|||||+++|.+..+ ....++.+... ..+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 44579999999999999999999998876 33445544332 3444555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC
Confidence 999999999999999888887765321 227899999999999764
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=1.3e-25 Score=151.20 Aligned_cols=123 Identities=23% Similarity=0.305 Sum_probs=93.1
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-----------CCceeeEEEEEEE-EECCeEEEEEEEeCCCccccc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQ 71 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 71 (156)
.....+||+++|++|+|||||++.+.+.. ...+ .++.+.++..... ..++..+.+++|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 45668999999999999999997666543 3222 2344444333333 456677899999999999999
Q ss_pred chhhhheecccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVN------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+..+++.+|++++|||++ +..++..+..|+..+. ....+.|+++|+||+|+.++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc
Confidence 99999999999999999999 4556666666666552 22348899999999999864
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=8.5e-25 Score=148.05 Aligned_cols=118 Identities=19% Similarity=0.341 Sum_probs=90.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+. .+.++.+.+ ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 44689999999999999999999987754 334554443 34455666 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+|||++++.+|..+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE 140 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc
Confidence 99999999999999988888765422 22789999999999975
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=4.9e-25 Score=147.69 Aligned_cols=119 Identities=23% Similarity=0.380 Sum_probs=94.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|.+++|||||+++|.+..+. .+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999987765 444554433 33444555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC
Confidence 99999999999999888888865421 127899999999999864
No 90
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=8.5e-25 Score=147.43 Aligned_cols=123 Identities=20% Similarity=0.391 Sum_probs=95.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC--CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-ccchhhhheeccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD 82 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 82 (156)
...+||+++|++|+|||||+++|.+.. +... .++.+.+.....+.+++..+.+.+|||+|... ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 456999999999999999999998633 2222 23344555566677888888999999999776 4556677888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++.+|+.+..|+..+...... .+.|+++|+||+|+.++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX 129 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc
Confidence 999999999999999999998887765332 27899999999999754
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=8.9e-25 Score=145.94 Aligned_cols=120 Identities=25% Similarity=0.453 Sum_probs=96.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 84 (156)
+...++|+++|++|+|||||+++|.+..+. ...++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 356799999999999999999999987542 234444432 33445554 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 85 VLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 85 l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECcCcccC
Confidence 999999999999998888877654321 237899999999999865
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=6.7e-25 Score=147.87 Aligned_cols=119 Identities=18% Similarity=0.418 Sum_probs=91.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|++|+|||||+++|.+..+.. +.++.+ .....+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 456999999999999999999999877542 334433 2333444444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCC
Confidence 99999999999999888887764322 237899999999999765
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=2.4e-24 Score=145.84 Aligned_cols=123 Identities=38% Similarity=0.741 Sum_probs=104.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999887777777777777778888998889999999999999888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||..+..++..+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc
Confidence 99999999999988888877765432 26799999999999764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=1.4e-24 Score=145.58 Aligned_cols=119 Identities=18% Similarity=0.353 Sum_probs=96.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|++++|||||++++.+..+.. +.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 467999999999999999999998776543 34454432 33444554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+..|+..+.... ...+.|+++|+||+|+.++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCC
Confidence 9999999999999888877775432 2237899999999999875
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=5.5e-25 Score=147.26 Aligned_cols=120 Identities=29% Similarity=0.504 Sum_probs=90.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC--CCCCCCCCceeeEEEEEEEEE---CCeEEEEEEEeCCCcccccchhhhheeccc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 82 (156)
.+||+++|++|||||||+++|.+. .+...+.++.+.+.....+.. .+..+.+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344445666666655444332 234578999999999999888899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSM-KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++++|||++++ .++..+..|+..+..... +.|+++|+||+|+.++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE 127 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc
Confidence 99999999997 578889999988876542 6899999999999865
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.1e-24 Score=145.26 Aligned_cols=119 Identities=22% Similarity=0.419 Sum_probs=93.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
++.++|+++|++|+|||||++++.+..+ ..+.++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999997765 3344555433 33445555 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEE---LQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSST---TSSCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChh---hCCCeEEEEEECCCCCCC
Confidence 99999999999998888887764322 237899999999999864
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.91 E-value=8.6e-24 Score=142.35 Aligned_cols=123 Identities=37% Similarity=0.733 Sum_probs=107.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45699999999999999999999999888778888888888888888998888999999999988888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||..+..+++.+..|+..+..... .+.|+++|+||+|+.+.
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc
Confidence 99999999999888888877655432 26799999999999764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=4.5e-26 Score=154.77 Aligned_cols=121 Identities=29% Similarity=0.598 Sum_probs=99.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.+||+++|.+|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999998877665555554333 344455666788999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD 149 (204)
Confidence 999999999999886 67776654332 6899999999999865
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.91 E-value=4.2e-24 Score=144.28 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=87.7
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEE--EEEEEC-CeEEEEEEEeCCCcccccchh---hhh
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--KEVQFE-DRLFTLQIWDTAGQERFQSLG---VAF 77 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~ 77 (156)
...+.+||+++|++++|||||++++.+.... . ++.+.+... ....+. +..+.+++|||+|++.+.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-N--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCG-G--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCC-c--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 4556799999999999999999988875322 2 222222222 222232 455789999999999987666 789
Q ss_pred eecccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||++++ +++..+..|+..+..... +.|+++|+||+|+.++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCch
Confidence 9999999999999997 666666667766644332 7899999999999763
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=2.8e-23 Score=141.80 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=89.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-hhhhheecc
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA 81 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~ 81 (156)
.+.+.++|+++|++|+|||||+++|.+..+...+.++ +.+... +.+++. .+.+.+|||||++.+.. ++..+++.+
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA 79 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence 3456799999999999999999999988876655433 333332 555543 57899999999998887 788889999
Q ss_pred cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|++++|||+++.. ++.....++..+..... ....+.|+++|+||+|+.+.
T Consensus 80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTC
T ss_pred CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCc
Confidence 9999999999854 45555554444432211 11226899999999999876
No 101
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=5e-23 Score=148.90 Aligned_cols=121 Identities=28% Similarity=0.597 Sum_probs=103.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999998887776666665443 555677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.++..+. .|...+..... +.|+++|+||+|+.+.
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccc
Confidence 999999999999986 67777766543 7899999999999764
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.90 E-value=2.4e-23 Score=138.05 Aligned_cols=119 Identities=22% Similarity=0.242 Sum_probs=90.9
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 83 (156)
...+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 456679999999999999999999999887766555555555455566666 467899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 84 CVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 84 ~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++|||++++....... .+..+ .. .+.|+++|+||+|+.+.
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l~~~---~~----~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AINHA---KA----ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HHHHH---GG----GSCCEEEEEETTTSSCS
T ss_pred EEEEEECCCCCcHHHHH-HHHHH---Hh----CCCCEEEEEECccCCcC
Confidence 99999998843222211 11222 11 17899999999999864
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=9.6e-23 Score=146.56 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=92.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cchhhhhe
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFY 78 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 78 (156)
..+||+++|++|+|||||++++.+.... ..+.+|.+.... .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4589999999999999999999877322 233455444433 344433 478999999999988 67888888
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+|++++|||++++.+++.+..|...+...... .++.|+++|+||+|+.++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCH
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccch
Confidence 9999999999999999999987776555433211 127899999999999873
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=148.76 Aligned_cols=118 Identities=18% Similarity=0.405 Sum_probs=90.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+.++|+|+|.+++|||||+++|.+..+... .++.+.. ...+...+ +.+++|||||++.+..++..+++.+|++++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998875432 2333333 23344444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||++++.+|..+..++..+..... ..++|+++|+||+|+.+.
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC
T ss_pred EEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEECccCCcc
Confidence 9999999999998887777654332 237899999999999875
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=4.3e-22 Score=151.48 Aligned_cols=119 Identities=18% Similarity=0.387 Sum_probs=98.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+.++|+++|.+++|||||+++|.+..+.. ..++.+.+. ..+.+.+ +.+.+|||+|++.+...+..+++.+|+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 456999999999999999999999888543 455655443 3344444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||++++.+|..+..|+..+..... ..++|+++|+||+|+.+.
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDRE---MRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGG---GTTCEEEEEEECCSSSSC
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhh---cCCCcEEEEEECCCCCcC
Confidence 99999999999999888888764322 237899999999999764
No 106
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.8e-23 Score=140.59 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=89.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec--
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 80 (156)
.+.++|+++|++|+|||||+++|.+..+... ..++.+ .......+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4568999999999999999999998875431 111111 11133578999999999888888877766
Q ss_pred --ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 --ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 --~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||++ ++.++..+..|+..+..........+.|+++|+||+|+.+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 89999998888888765532101227899999999999876
No 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2.7e-23 Score=142.27 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=92.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCC---CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheec-
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG- 80 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 80 (156)
..+.++|+++|++|+|||||+++|.+..+... ..++.+.+ .....+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 45679999999999999999999998875431 22222211 133579999999999998888888877
Q ss_pred ---ccEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ---ADCCVLVYDVN-SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ---~~~~l~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||.+ ++.++.....|+..+..........+.|+++|+||+|+...
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 89999999999 88889988888888776532101227899999999999876
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=2.4e-23 Score=149.59 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=82.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCC---CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc---hhhhheecccE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC 83 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~ 83 (156)
||+++|++|+|||||++++.+...+. ...++.+.+... ++ ..+.++||||+|++.+.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 235566554432 22 237899999999999964 46789999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 84 CVLVYDVNSM--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 84 ~l~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
+++|||++++ +++..+..|+..+.... +++|+++||||+|+.+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSED 122 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchh
Confidence 9999999998 22222333333333322 278999999999998763
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=4.7e-22 Score=137.22 Aligned_cols=124 Identities=20% Similarity=0.111 Sum_probs=82.5
Q ss_pred CcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cc
Q 031598 2 PSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QS 72 (156)
Q Consensus 2 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~ 72 (156)
|....+.++|+++|.+|+|||||+++|.+..+.....+..+.+.........+ ..+.+|||||+... ..
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHH
Confidence 33345679999999999999999999998875422222222233333344444 67999999998321 11
Q ss_pred hhhhheecccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 73 LGVAFYRGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 73 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+..++..+|++++|||++++.++.. ...|+..+.... .+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC-
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc
Confidence 12334677899999999999877652 234555554322 27899999999999875
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=8.3e-22 Score=130.55 Aligned_cols=119 Identities=25% Similarity=0.362 Sum_probs=85.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 77 (156)
+..+|+++|++|+|||||+++|.+.... ....++.+.+.....+.+++ ..+.+|||||+..+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987642 12233333445556666676 45889999998653211 1135
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||++++.++. ...|+..+..... .+.|+++|+||+|+.++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 130 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP----AKLPITVVRNKADITGE 130 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC----TTCCEEEEEECHHHHCC
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc----cCCCEEEEEECccCCcc
Confidence 78899999999999988766 3467766665432 26899999999999654
No 111
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.86 E-value=7.4e-23 Score=143.64 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=88.4
Q ss_pred ccceeEEEEEEcCC---------CCChhHHHHHHhc---CCCCCCCCCce-eeEEEEEE--------------EEECCeE
Q 031598 4 RRRTLLKVIILGDS---------GVGKTSLMNQYVN---KKFSNQYKATI-GADFLTKE--------------VQFEDRL 56 (156)
Q Consensus 4 ~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 56 (156)
...+.+||+++|.+ ++|||||+++|.+ ..+...+.++. +.++.... ...++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34567999999999 9999999999998 44444444443 22211111 1134566
Q ss_pred EEEEEEe-----------------------CCCcccccchhhhhee---------------------cccEEEEEEECCC
Q 031598 57 FTLQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNS 92 (156)
Q Consensus 57 ~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~l~v~d~~~ 92 (156)
+.+.+|| +.|++.+...+..+++ .+|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6667777777777776 7999999999999
Q ss_pred h--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 93 M--KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 93 ~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+ .+|+.+..|+..+....... +.|+++|+||+|+.++
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~---~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKT---KKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHT---TCCEEEEEECGGGBCH
T ss_pred CchhhHHHHHHHHHHHHHHhccC---CCCEEEEEEccccccc
Confidence 8 99999999999887653211 6899999999999754
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.86 E-value=2.1e-21 Score=126.60 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=78.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccchhhhheec
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 80 (156)
.||+++|++|+|||||+++|.+.... ....+..+.+........++ ..+.+|||||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999987643 12223333344445555566 4789999999876 34455667889
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|||.+++.+... .++..+... .+.|+++|+||+|+.+.
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc
Confidence 999999999998644332 223233222 16799999999999864
No 113
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=4.6e-21 Score=126.06 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=80.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhee--
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-- 79 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 79 (156)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998765443344433333344455555 579999999988764 23345554
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++++++|+|.++.+. ...|+..+.. . +.|+++|+||+|+...
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~----~---~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME----M---GANLLLALNKMDLAKS 123 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH----T---TCCEEEEEECHHHHHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh----c---CCCEEEEEEchHhccc
Confidence 7899999999998643 3445555543 1 6799999999999654
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=1.3e-21 Score=131.53 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=78.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 75 (156)
...++|+++|.+|+|||||+++|.+..+.....++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4569999999999999999999998875544445544444333344433 589999999 666777777
Q ss_pred hheecc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGA---DCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~---~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.++
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCG
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCh
Confidence 777776 9999999999887766532 1222211 27799999999999875
No 115
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=2.9e-20 Score=133.26 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=83.2
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc--------cc
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ 71 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~ 71 (156)
|++. .+..+|+++|.+|+|||||+|+|++.++... ..+..+.+........++ .++++|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHH
Confidence 4554 4567899999999999999999999876432 222222222222233333 7899999999765 34
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWR-EEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.....+++.+|++++|||++++.+.. ..|. ..+.... .+.|+++|+||+|+.+.
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCc
Confidence 45566789999999999999865433 2333 3343322 26899999999999865
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.85 E-value=4.6e-22 Score=152.52 Aligned_cols=120 Identities=27% Similarity=0.404 Sum_probs=88.3
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEE------E--EECCeEEEEEEEeCCCcccccchhhh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE------V--QFEDRLFTLQIWDTAGQERFQSLGVA 76 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~~~ 76 (156)
....+||+++|.+++|||||++++.+..+.....++.+.+..... + ..++....+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999877777777766655432 1 11233578999999999999999999
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.+|++++|||+++. +....|...+..+.. +.|+++|+||+|+.+.
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS 165 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc
Confidence 99999999999999876 445667777776643 6799999999999875
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=1.1e-20 Score=126.25 Aligned_cols=116 Identities=12% Similarity=0.197 Sum_probs=85.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhe
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY 78 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 78 (156)
..+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. ..+..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34679999999999999999999998764433344444555555666665 689999999988764 3455555
Q ss_pred e--cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 R--GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 ~--~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
. .++++++|+|.++ ++....|...+.. .+.|+++|+||+|+...
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~ 127 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKS 127 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHH
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhcccc
Confidence 4 4899999999876 4455566666543 16799999999999754
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=4e-21 Score=134.86 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=84.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------hhhhhe
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY 78 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 78 (156)
.+|+++|.+|||||||+++|.+........++.+.+.....+.+++ ..+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 5899999999999999999998875444455555566666676666 4799999999876653 455566
Q ss_pred --ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 --RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 --~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+|++++|+|+++.++...+..++. .. +.|+++|+||+|+.+.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~-------~~---~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF-------EL---GKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT-------TS---CSCEEEEEECHHHHHH
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH-------Hc---CCCEEEEEEChhcCCc
Confidence 88999999999999765544332222 11 7899999999999765
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=4.6e-20 Score=132.65 Aligned_cols=121 Identities=21% Similarity=0.167 Sum_probs=88.3
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------- 71 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 71 (156)
+...+.-.|+++|.+|+|||||+++|.+.++... ..+..+..........+ ...++.+|||||+....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 3456678999999999999999999999886532 22222222333333444 13789999999985544
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.....+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSS
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCC
Confidence 5556778899999999999998887776666666543 1679999999999983
No 120
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-21 Score=131.01 Aligned_cols=115 Identities=24% Similarity=0.335 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccchhhhh
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF 77 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 77 (156)
++|+++|++|+|||||+++|.+..+...+.++.+.. ....... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988765555544332 2223333 588999999 56667777777
Q ss_pred eec-ccEEEEEEECCChhhHHHH-HHHHHH--------HHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRG-ADCCVLVYDVNSMKSFDNL-NNWREE--------FLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~-~~~~l~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++. +++++++|++.+..++..+ ..|... +...... .+.|+++|+||+|+.+.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc
Confidence 776 7766666666677777765 455432 2222221 27899999999999876
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.84 E-value=1.1e-20 Score=133.87 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=83.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------hhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVA 76 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 76 (156)
+.++|+++|.+|+|||||+++|.+........++.+.+.....+...+ ..+.+|||||+..+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 358999999999999999999998875444445555555556666555 4688999999876652 2222
Q ss_pred he--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++ +.+|++++|+|+++.+....+..++..+ +.|+++|+||+|+.+.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHHHH
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccchhh
Confidence 33 6899999999999876554444333332 6799999999999764
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=2.1e-20 Score=131.31 Aligned_cols=115 Identities=20% Similarity=0.180 Sum_probs=83.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch------hhhhe-
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY- 78 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~- 78 (156)
.+.++|+++|.+|+|||||+++|.+..+.....++.+.+.....+...+ ..+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999998775433344444444444555544 68999999998776542 24454
Q ss_pred -ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 -RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 -~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+.+.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKK 125 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHH
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCc
Confidence 5799999999999876433 344444321 6899999999999754
No 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.83 E-value=5e-20 Score=129.70 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=83.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhhee-----
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR----- 79 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 79 (156)
.+.++|+++|.+|+|||||+++|.+...... ..+..+.......+..++ ..+++|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4579999999999999999999998875221 122222333344445555 58999999998877655444443
Q ss_pred ----cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 ----GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ----~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|++.+..........|+..+....... ...|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence 7899999999876542222246666666554321 12489999999999644
No 124
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=7.8e-21 Score=127.48 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=79.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 75 (156)
...++|+++|++|+|||||+++|.+.... ...++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 44589999999999999999999988733 2334443333333333332 578999999 556666666
Q ss_pred hheecc---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 76 AFYRGA---DCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 76 ~~~~~~---~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.+++.+ +++++|+|.+++.+... +..|+... +.|+++|+||+|+.+++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGG
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChH
Confidence 676665 99999999987643332 23333322 67999999999998653
No 125
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=124.72 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=77.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCeEEEEEEEeCCCcc-----------ccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQE-----------RFQ 71 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~ 71 (156)
....++|+++|.+|+|||||+++|.+........+ +.+..........++ ..+.+|||||.. .+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34569999999999999999999999887554443 333344444455555 578999999933 334
Q ss_pred chhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 72 SLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 72 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+...++.+|++++|+|+++.... ...++..+...+... ...|+++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhh--ccceEEEEEeCCccCCc
Confidence 4444455678999999998764331 123333333222110 04599999999999765
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=6.9e-20 Score=129.52 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=84.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc------hhhhhe--
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY-- 78 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 78 (156)
+.++|+++|++|||||||+++|.+..+.....++.+.+.....+...+ ..+.+|||||+..+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 458999999999999999999998876444455555666666666666 4699999999887655 455555
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+|++++|+|.++.+. ...+...+.... ..|+++|+||+|+.+.
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME------VKNIILVLNKFDLLKK 124 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT------CCSEEEEEECHHHHHH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC------CCCEEEEEEChhcCcc
Confidence 67999999999998642 223333343221 3799999999998654
No 127
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=3.5e-20 Score=129.48 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=77.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCeEEEEEEEeCCCc--------ccccchh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLG 74 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 74 (156)
..+.++|+++|.+|+|||||++++.+.......... .+..........++ ..+.+|||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 456799999999999999999999988765433322 22222333444455 67999999995 3333333
Q ss_pred hhhe----ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFY----RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~----~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..++ +.+|++++|+|+++.... ...+.+.+...+.. ...+.|+++|+||+|+.+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC
Confidence 3333 889999999999853221 12233333333221 1125699999999999865
No 128
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=3e-20 Score=127.44 Aligned_cols=119 Identities=17% Similarity=0.076 Sum_probs=78.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEeCCCc----------ccccchh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQSLG 74 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~~ 74 (156)
...++|+++|.+|+|||||+++|.+...........+.+......... .....+.+|||||. +.+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 346899999999999999999999886321122222222222233333 33367999999994 3334455
Q ss_pred hhheec---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 VAFYRG---ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~~~~~~---~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+++. +|++++|+|.+++.+.. ...++..+.. .+.|+++|+||+|+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-------TGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-------GCCCEEEEEECGGGSCH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-------cCCCEEEEEeccccCCh
Confidence 555555 78899999999754322 2333443332 16799999999999865
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.81 E-value=6.1e-20 Score=129.81 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=80.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc------chhhhhee-
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 79 (156)
..++|+++|++|||||||+++|.+........++. +.......+.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35799999999999999999999876433333332 22223333444 5679999999988765 34455564
Q ss_pred -cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 -GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 -~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|||+++.++. ..|...+.. .+.|+++|+||+|+...
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDG 122 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCc
Confidence 59999999999986543 344444443 17899999999999654
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=1.8e-19 Score=136.05 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=70.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------hhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 77 (156)
..++|+++|.+|+|||||+|+|.+.+.. ....++.+.+.....+.+++ ..+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3588999999999999999999987532 22334444455556666666 679999999987655433 346
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||.+++.++..+..+.. +...+. +.|+++|+||+|+.+.
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l~-----~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAHP-----AAKFLTVANKLDRAAN 358 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHCT-----TSEEEEEEECTTSCTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHH-HHHhcC-----CCCEEEEEECcCCCCc
Confidence 788999999999999887754323222 333333 6799999999999876
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.79 E-value=1.8e-18 Score=121.49 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=75.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCc-eeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------- 74 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 74 (156)
..+.++|+++|.+|+|||||+++|.+... .....++ .+.+.........+ ..+.+|||||...+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 34569999999999999999999998773 3222232 23333344444555 579999999976553221
Q ss_pred ---hhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEe-cCCCCCC
Q 031598 75 ---VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN-KIDVDGG 132 (156)
Q Consensus 75 ---~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~~~ 132 (156)
..+++.+|++++|||+.+..... ..++..+...+... ...|+++|+| |+|+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCc
Confidence 22567899999999998622211 12222333332211 0346666666 9999854
No 132
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=8.9e-19 Score=123.78 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=79.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhh-------h-
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-------A- 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~- 76 (156)
...++|+++|.+|+|||||+++|++....... .+..+...........+ ..+.+|||||...+..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987753211 12222222223333344 6799999999876543222 1
Q ss_pred -heecccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 -FYRGADCCVLVYDVNSMKSFDN-LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 -~~~~~~~~l~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+.+|++++|||.+... +.. ...|+..+...+... ...|+++|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 124689999999987532 332 246666666554321 02699999999999765
No 133
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.79 E-value=5.4e-19 Score=132.57 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=82.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|.+++|||||+++|+...- ..+..+..+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45679999999999999999999954311 11112333344434444433
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV 129 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 129 (156)
...+++|||||++.|...+...++.+|++++|+|+++... |+......+.+..... . +.| +++|+||+|+
T Consensus 94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~---~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A---GVKHLIVLINKMDD 167 (439)
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c---CCCeEEEEeecCCC
Confidence 4689999999999999888899999999999999998642 1111111222111111 1 566 9999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
...
T Consensus 168 ~~~ 170 (439)
T 3j2k_7 168 PTV 170 (439)
T ss_pred ccc
Confidence 653
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1e-19 Score=136.48 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=81.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccchhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV 75 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~ 75 (156)
..++|+++|.+++|||||+++|.+.... ....++.+.+.....+..++ ..+.+|||||+ +.+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 5689999999999999999999987643 22233333444444556666 45899999997 33333322
Q ss_pred -hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 -AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 -~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+++.+|++++|||++++.+++.. .|...+.. .+.|+++|+||+|+.++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCc
Confidence 467889999999999998887764 45554432 17899999999999875
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=1.4e-18 Score=130.32 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=74.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccchhhhhe
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 78 (156)
.+|+++|.+++|||||+|+|.+.+.. ....+..+.+.....+...+ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 22233443444455556666 4689999999653 234456678
Q ss_pred ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 79 RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 79 ~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+.+|++++|||+.++.+... .+...+.+.. +.|+++|+||+|+.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~------~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRKS------TVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH------TCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc------CCCEEEEEeCCCCcc
Confidence 99999999999987654332 2222222221 679999999999863
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=2.6e-19 Score=133.35 Aligned_cols=118 Identities=28% Similarity=0.342 Sum_probs=78.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-------hhh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVA 76 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~ 76 (156)
....++|+++|..++|||||+++|.+..+. ....+..+.+.....+.+.+. ..+.+|||||+..+... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 345689999999999999999999988753 222233333444455555554 27999999998876544 344
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
++..+|++++|||+..... ...|...+... +.|+++|+||+|+.+..
T Consensus 110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCC
T ss_pred HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCcc
Confidence 6788999999999943322 34455544432 67999999999998763
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=1.3e-18 Score=134.35 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=81.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----C------CCCceeeEEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----Q------YKATIGADFLTK--EVQF---EDRLFTLQIWDTAGQE 68 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~------~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~ 68 (156)
+.+||+++|..++|||||+++|+... ... . .....+.+.... .+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 56899999999999999999998531 100 0 001112222221 2222 4556899999999999
Q ss_pred cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 69 RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+...+...++.+|++++|||+++..+++....|..... . ++|+++|+||+|+.+.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~-----~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---M-----DLEVVPVLNKIDLPAA 138 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---T-----TCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C-----CCCEEEeeeccCcccc
Confidence 999999999999999999999999877777766665542 1 7799999999999875
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=3.3e-18 Score=131.98 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=84.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC--CCCC-----C------CCceeeEE----EEEEEEE-CCeEEEEEEEeCCCc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----Y------KATIGADF----LTKEVQF-EDRLFTLQIWDTAGQ 67 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----~------~~~~~~~~----~~~~~~~-~~~~~~~~i~D~~g~ 67 (156)
.+.++|+++|..++|||||+++|+... .... . ....+.+. ....+.. ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997521 1000 0 00011111 1111221 455689999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+...+...++.+|++++|||+++..+.+....|..... . ++|+++|+||+|+.+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~-----~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---Q-----DLVIIPVINKIDLPSA 140 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---T-----TCEEEEEEECTTSTTC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---C-----CCCEEEEEeccCcccc
Confidence 9999999999999999999999999888777776665442 1 7899999999999875
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.77 E-value=1.3e-19 Score=137.51 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=78.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC-------------------------------CCCCCCceeeEEEEEEEEECC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (156)
+..+||+++|.+++|||||+++|++... .....+..+.+.....+ ..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEE--EC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEE--ec
Confidence 4569999999999999999999975411 01111111222222223 33
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDN-----LNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
....+.+|||||++.+.......++.+|++++|||++++.++.. .......+..... ..|+++|+||+|+
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence 44789999999999999999999999999999999998754332 1112222222221 2469999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
.+.
T Consensus 184 ~~~ 186 (483)
T 3p26_A 184 VDW 186 (483)
T ss_dssp GTT
T ss_pred ccc
Confidence 874
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=8.1e-18 Score=123.22 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=85.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccccc---------chhhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA 76 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 76 (156)
...++|+++|.+|+|||||+++|.+........+..+...........+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998764221122222233333343443 679999999975432 11123
Q ss_pred heecccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
....+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+.+.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE 295 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh
Confidence 345689999999999876 67777888888876553 6799999999999865
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=4.5e-19 Score=132.96 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=72.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccchhhhheec
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYRG 80 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 80 (156)
.+|+++|.+|+|||||+++|.+..... ...+.+.+...........+..+.+|||||+. .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 689999999999999999999876532 22333343333333334344679999999975 456667778899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|+|+.++.++.. .++..+. .. .+.|+++|+||+|+.+.
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l---~~---~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHH---TT---CCSCEEEEEECCCC---
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHH---HH---cCCCEEEEEECccCccc
Confidence 999999999998766543 2233322 22 27799999999999864
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.77 E-value=7.4e-19 Score=124.44 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=72.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCccc-------
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 69 (156)
+...++|+++|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+++|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 345699999999999999999998876543322 34444444444444444456999999999632
Q ss_pred ccchh-------hhhee-------------cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 70 FQSLG-------VAFYR-------------GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 70 ~~~~~-------~~~~~-------------~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
+..+. ..++. .+|+++++++.+.......-..++..+ .. +.|+++|+||+|+
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l----~~----~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKADT 156 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH----TT----TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH----hc----cCCEEEEEeccCC
Confidence 22222 22222 267899999777632212222333333 22 6799999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
...
T Consensus 157 ~~~ 159 (274)
T 3t5d_A 157 LTP 159 (274)
T ss_dssp SCH
T ss_pred CCH
Confidence 754
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.76 E-value=1.1e-17 Score=124.24 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=86.3
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEE-------EE---------EE---CCeEEEEEEEeC
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-------EV---------QF---EDRLFTLQIWDT 64 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~ 64 (156)
..++.++|+++|.+++|||||+++|.+........ ....+.... .. .. ......+++|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG-YAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE-EEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC-ccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 45667999999999999999999999765332111 000000000 00 00 112368999999
Q ss_pred CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||++.+.......++.+|++++|+|++++.++....+++..+... . ..|+++|+||+|+.+.
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~-----~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-----VKNLIIVQNKVDVVSK 144 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-T-----CCCEEEEEECGGGSCH
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-C-----CCCEEEEEECccccch
Confidence 999999999999999999999999999987556666666544332 2 3489999999999875
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=3.5e-19 Score=134.23 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=76.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC--------cccccchhhh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVA 76 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~ 76 (156)
.....+|+++|.+|+|||||+++|.+.+... ...+.+.+..............+.+||||| +..+...+..
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 4456899999999999999999999876542 223334444444444455556899999999 6667777888
Q ss_pred heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++.+|++++|+|..++.... ..++..+. .. .+.|+++|+||+|+.+.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~l---~~---~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA--DEEVAKIL---YR---TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH--HHHHHHHH---TT---CCSCEEEEEECC-----
T ss_pred hHhhCCEEEEEEeCCCCCChH--HHHHHHHH---HH---cCCCEEEEEECccchhh
Confidence 889999999999988744322 23333332 22 27899999999999754
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.76 E-value=3.8e-18 Score=129.24 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=80.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC-------CCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF 77 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 77 (156)
..+.++|+++|..++|||||+++|.+.. ......+..+.+.....+.+++ ..+++|||||++.+.......
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3457999999999999999999999776 2222222233333333444555 689999999999998888889
Q ss_pred eecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+|++++|+|+++ +.+.+.+. .+ ... ++|+++|+||+|+.++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~-~~~------~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----IL-DHF------NIPIIVVITKSDNAGT 140 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HH-HHT------TCCBCEEEECTTSSCH
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HH-HHc------CCCEEEEEECCCcccc
Confidence 999999999999998 33333221 11 211 6788999999999864
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.75 E-value=1.8e-18 Score=130.72 Aligned_cols=113 Identities=25% Similarity=0.328 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc-cccc--------hhhhh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF 77 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 77 (156)
.++|+++|.+++|||||+|+|.+.+.. ....+..+.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 23334444455556666666 568999999987 5432 23456
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||++++.+++... +++ .+. +.|+++|+||+|+.++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~----~l~-----~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILE----RIK-----NKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHH----HHT-----TSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHH----Hhc-----CCCEEEEEECcccccc
Confidence 78999999999999987766532 222 222 6799999999999753
No 147
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=2.4e-19 Score=134.41 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=81.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC-----------------------------CCCceeeEEEEEEEEECC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFED 54 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (156)
++.++|+++|..++|||||+++|+.. .+... ..+..+.+.....+ ..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence 45699999999999999999999864 22110 01112222222223 33
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEEecCCCCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-PFVVLGNKIDVDGG 132 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~ 132 (156)
....+++|||||+..+...+...++.+|++++|||+++ .+|+....|..+..++.......+. |+++|+||+|+.+.
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 34689999999999999888999999999999999998 6676544332222221110000133 68999999999873
No 148
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.75 E-value=1.2e-18 Score=126.70 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=84.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----ccchhhhhe---ecc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA 81 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 81 (156)
.+|+++|.+++|||||+++|.+.+......+..+.......+.+++. ..+.+|||||..+ +..+...++ +.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36889999999999999999987642111111112222333444432 4799999999543 233334444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 82 DCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 82 ~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+++++|||+++ +.+++.+..|...+..+... ..+.|+++|+||+|+.+.
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA 289 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC
Confidence 99999999998 78888888888888765321 237899999999999864
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=8.2e-19 Score=133.97 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC------------------CC----CCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF------------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWD 63 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (156)
.+..+|+++|.+++|||||+++|+...- .. ...+..+.......+.+.+ +.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence 4578999999999999999999962110 00 0001111112223344444 7899999
Q ss_pred CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||+..+...+..+++.+|++++|+|+++....+....|.. +. . . ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~---~-~---~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR---L-R---HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH---T-T---TCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH---H-c---CCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999776666544432 22 1 1 7899999999999765
No 150
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.75 E-value=2.3e-19 Score=135.80 Aligned_cols=117 Identities=24% Similarity=0.237 Sum_probs=81.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l 85 (156)
.+..+|+++|..++|||||+++|.+..+.....+..+.+.....+..++ ..+++|||||++.|..++...+..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568899999999999999999986544332222222222122222233 47899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 86 LVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|||+++....+....+ ..+. . .+.|+++++||+|+.+.
T Consensus 80 LVVda~~g~~~qT~e~l-~~~~---~----~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-QHAK---A----AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EEEETTTBSCTTTHHHH-HHHH---H----TTCCEEEEEECSSSSTT
T ss_pred EEeecccCccHHHHHHH-HHHH---h----cCceEEEEEEecccccc
Confidence 99999884322222111 1111 1 17899999999999864
No 151
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=1.7e-18 Score=130.39 Aligned_cols=114 Identities=25% Similarity=0.281 Sum_probs=74.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchh--------hhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 77 (156)
..++|+++|.+|+|||||+|+|.+.+.. ....++.+.+.....+.+++ ..+.+|||||...+...+ ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3579999999999999999999976432 22234444444445556666 568999999976554332 235
Q ss_pred eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 78 YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 78 ~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+|++++|||.+++.+... ..++..+ . ..|+++|+||+|+.+.
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCG
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcc
Confidence 688999999999999766544 3344433 2 4699999999999875
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=124.32 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=79.0
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCC---CCCCCCC--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKK---FSNQYKA--TIGADFLTKEVQF-------------E--D----RLFTL 59 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 59 (156)
.++..++|+++|..++|||||+++|.+.. +.....+ +....+....+.. + + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 45567999999999999999999998543 2222222 3322222222211 1 1 13689
Q ss_pred EEEeCCCcccccchhhhheecccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||||++.+.......+..+|++++|+|++++ .+++.+. .+ ..+. ..|+++|+||+|+.+.
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~-~~l~-----~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----AL-EILG-----IDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HH-HHTT-----CCCEEEEEECTTSSCT
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HH-HHcC-----CCeEEEEEEccCCCCH
Confidence 9999999999888877788889999999999964 3333322 22 2222 3489999999999875
No 153
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=4.7e-18 Score=129.88 Aligned_cols=118 Identities=18% Similarity=0.276 Sum_probs=80.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCC-C-------------------CCCceeeEEE--EEEEEECCeEEEEEEEe
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSN-Q-------------------YKATIGADFL--TKEVQFEDRLFTLQIWD 63 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~-------------------~~~~~~~~~~--~~~~~~~~~~~~~~i~D 63 (156)
.+.++|+++|.+++|||||+++|....-.- . .....+.+.. ...+.+.+ +.+++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD 88 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD 88 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence 457999999999999999999998632100 0 0001111111 12233333 7899999
Q ss_pred CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|||+..+......+++.+|++++|+|+++..... ...+...+... ++|+++|+||+|+...+
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-----t~~~~~~~~~~---~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-----TRKLMEVTRLR---DTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-----HHHHHHHHTTT---TCCEEEEEECTTSCCSC
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-----HHHHHHHHHHc---CCCEEEEEcCcCCcccc
Confidence 9999999888889999999999999999864322 22222223322 78999999999998753
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=1.5e-18 Score=130.77 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=80.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEeCCC----------cccccchh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~ 74 (156)
...++|+++|.+++|||||+++|.+... .....++.+.+.....+..++ ..+++||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4568999999999999999999997652 122223333333334455566 4789999999 56665554
Q ss_pred h-hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 75 V-AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 75 ~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
. .+++.+|++++|+|++++.... ...|...+.. .+.|+++|+||+|+.++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~-------~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE-------AGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH-------TTCEEEEEEECGGGSCC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH-------cCCCEEEEEEChhcCCC
Confidence 4 3678899999999999864422 2334443332 16899999999999876
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=3.2e-17 Score=117.46 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=76.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccchhh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV 75 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 75 (156)
.+..+|+++|++|+|||||+++|.+...... ..+..+.......+..++ ..+.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 3456899999999999999999998865311 112111122222233333 689999999986 2344456
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..++.+|++++|+|.++ - .....+...... . .+.|+++|+||+|+..
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~---~---~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-W--TPDDEMVLNKLR---E---GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp SCCCCEEEEEEEEETTC-C--CHHHHHHHHHHH---S---SSSCEEEEEESTTTCC
T ss_pred HHHhcCCEEEEEEeCCC-C--CHHHHHHHHHHH---h---cCCCEEEEEECcccCc
Confidence 67889999999999977 2 222223222221 1 1679999999999986
No 156
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.74 E-value=3e-18 Score=129.40 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=68.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC--CCC-----------------------------CCCCceeeEEEEEEEEECC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK--FSN-----------------------------QYKATIGADFLTKEVQFED 54 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (156)
+..++|+++|..++|||||+++|+... +.. ......+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 457899999999999999999997421 100 0011111122222333333
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVD 130 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 130 (156)
..+++|||||++.|.......++.+|++++|||+++.. +|+....+.+.+..... . ++| +++|+||+|+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~---~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q---GINHLVVVINKMDEP 194 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T---TCSSEEEEEECTTST
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c---CCCEEEEEEECccCC
Confidence 67999999999999888888889999999999999863 33322223332222111 1 667 99999999997
Q ss_pred C
Q 031598 131 G 131 (156)
Q Consensus 131 ~ 131 (156)
+
T Consensus 195 ~ 195 (467)
T 1r5b_A 195 S 195 (467)
T ss_dssp T
T ss_pred C
Confidence 5
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=4e-17 Score=119.65 Aligned_cols=116 Identities=23% Similarity=0.177 Sum_probs=76.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccchhhhheec
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYRG 80 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~ 80 (156)
.|+++|.+|+|||||+++|.+........+..+.+.....+.+++ ..+.+|||+|... +...+ ..+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998875332233333334455666777 4689999999521 22222 24678
Q ss_pred ccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 81 ADCCVLVYDVNSMK--SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 81 ~~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+|++++|+|++++. .......|...+... .. .+.|+++|+||+|+.+.
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~---~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREI-GV---SGKPILVTLNKIDKING 307 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC---CSCCEEEEEECGGGCCS
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc---CCCCEEEEEECCCCCCc
Confidence 99999999999876 455454555444333 21 26799999999999864
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.74 E-value=5.1e-20 Score=140.41 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~ 86 (156)
+..+|+++|.+++|||||+++|.+..+.....++.+.+.....+..++ ...+++|||||++.|..++...++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999987655433344443333333333221 2378999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 87 VYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|||+++....+....+ ..+ .. . +.|+++|+||+|+.+.
T Consensus 82 VVDa~dg~~~qt~e~l-~~~---~~-~---~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHA---KD-A---HVPIVLAINKCDKAEA 119 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHH---HT-T---TCCEEECCBSGGGTTT
T ss_pred EEECCCCccHHHHHHH-HHH---HH-c---CCcEEEEEeccccccc
Confidence 9999987655443322 222 12 1 7799999999999865
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=6.9e-18 Score=125.15 Aligned_cols=117 Identities=19% Similarity=0.140 Sum_probs=80.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCC-------CCCC-------CCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 72 (156)
+.++|+++|..++|||||+++|.+.. +... .....+.+.......+......+++|||||+..|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 1000 001112222223333433446899999999999888
Q ss_pred hhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 031598 73 LGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG 131 (156)
Q Consensus 73 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 131 (156)
.....++.+|++++|||+++....+....| ..+. .. ++| +++|+||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~-~~------~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLAR-QI------GVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHH-HT------TCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHH-Hc------CCCeEEEEEECcccCC
Confidence 888889999999999999986544433222 2222 11 668 789999999985
No 160
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=3.9e-17 Score=128.35 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=85.6
Q ss_pred cccceeEEEEEEcCCCCChhHHHHHHhcCC--CC------C------------CCCCceeeEEEEEEEEECCeEEEEEEE
Q 031598 3 SRRRTLLKVIILGDSGVGKTSLMNQYVNKK--FS------N------------QYKATIGADFLTKEVQFEDRLFTLQIW 62 (156)
Q Consensus 3 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~ 62 (156)
....+.++|+++|.+++|||||+++|+... .. . ....+. ......+...+ +.+++|
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi--~~~~~~~~~~~--~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITI--TAAVTTCFWKD--HRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETT--EEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccc--ccceEEEEECC--eEEEEE
Confidence 445678999999999999999999998321 10 0 111111 11122333344 789999
Q ss_pred eCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
||||+..+...+..+++.+|++++|+|+++..+++....|.. +.. . ++|+++|+||+|+...
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~---~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----Y---KVPRIAFANKMDKTGA 144 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----T---TCCEEEEEECTTSTTC
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----c---CCCEEEEEECCCcccC
Confidence 999999999999999999999999999999877776655543 221 1 7899999999999875
No 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=126.34 Aligned_cols=117 Identities=18% Similarity=0.309 Sum_probs=64.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCC-CC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSN-QY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 70 (156)
..++|+++|++|+|||||+++|++..... .. .++.+...........+....+++|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 35899999999999999999987654322 11 133333333333344555678999999998 556
Q ss_pred cchhh-------hheecc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCC
Q 031598 71 QSLGV-------AFYRGA-------------DCCVLVYDVNSMKSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDV 129 (156)
Q Consensus 71 ~~~~~-------~~~~~~-------------~~~l~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 129 (156)
..++. .+++.+ |+++++++.. ..++..+. .++.. +. .++|+++|+||+|+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~----l~----~~~piIlV~NK~Dl 186 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKA----IH----NKVNIVPVIAKADT 186 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHH----TC----S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHH----hc----cCCCEEEEEECCCC
Confidence 66655 455433 3455555432 33344433 23332 22 27899999999999
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
...
T Consensus 187 ~~~ 189 (361)
T 2qag_A 187 LTL 189 (361)
T ss_dssp SCH
T ss_pred CCH
Confidence 865
No 162
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.73 E-value=7.2e-18 Score=121.57 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=63.4
Q ss_pred EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDN 117 (156)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (156)
..+..++ +.+++|||+|++.++..|..+++.++++++|||++ +..++.+...|+..+... ....+
T Consensus 160 ~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~~ 234 (327)
T 3ohm_A 160 YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQN 234 (327)
T ss_dssp EEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGTT
T ss_pred EEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccCC
Confidence 3344454 78999999999999999999999999999999655 566777776677666532 22337
Q ss_pred CcEEEEEecCCCCCC
Q 031598 118 FPFVVLGNKIDVDGG 132 (156)
Q Consensus 118 ~p~ilv~nK~Dl~~~ 132 (156)
+|+++++||+|+.++
T Consensus 235 ~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 235 SSVILFLNKKDLLEE 249 (327)
T ss_dssp CEEEEEEECHHHHHH
T ss_pred ceEEEEEECchhhhh
Confidence 899999999999764
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=3.8e-17 Score=122.45 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=79.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCC---CCC---------CCC---------------------ceeeEEEEEEEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQ---------YKA---------------------TIGADFLTKEVQ 51 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~---------~~~---------------------~~~~~~~~~~~~ 51 (156)
.+..++|+++|..++|||||+++|++... ... ... ..+.+.....+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34569999999999999999999985531 000 000 111111122222
Q ss_pred ECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
.....+++|||||++.|...+...++.+|++++|||+++....+. .+++..+ .... ..|+++|+||+|+.+
T Consensus 101 --~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~-~~~~-----~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 101 --TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIA-SLLG-----IKHIVVAINKMDLNG 171 (434)
T ss_dssp --CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HHTT-----CCEEEEEEECTTTTT
T ss_pred --cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HHcC-----CCeEEEEEEcCcCCc
Confidence 233679999999999998888888999999999999998653332 2333322 2221 236999999999986
Q ss_pred C
Q 031598 132 G 132 (156)
Q Consensus 132 ~ 132 (156)
.
T Consensus 172 ~ 172 (434)
T 1zun_B 172 F 172 (434)
T ss_dssp S
T ss_pred c
Confidence 4
No 164
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=9e-18 Score=134.36 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=86.8
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC------------CCC------CCCCceeeEEEEEEEE------------ECC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK------------FSN------QYKATIGADFLTKEVQ------------FED 54 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~ 54 (156)
..+.+||+++|..++|||||+++|+... +.+ ....+.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998541 100 0111221222222222 133
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
..+.+++|||||+.+|...+..+++.+|++++|||+.+..+++....|..... .++|+++|+||+|+..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcch
Confidence 46899999999999999999999999999999999999888877655554331 1679999999999973
No 165
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=4.2e-17 Score=121.42 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=80.8
Q ss_pred ccceeEEEEEEcCCCCChhHHHHHHhcCCC---CCCCCC--ceeeEEEEEEEEE-------------C--C----eEEEE
Q 031598 4 RRRTLLKVIILGDSGVGKTSLMNQYVNKKF---SNQYKA--TIGADFLTKEVQF-------------E--D----RLFTL 59 (156)
Q Consensus 4 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 59 (156)
.++..++|+++|..++|||||+++|.+... .....+ +....+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 356679999999999999999999985432 222222 3322222222211 0 1 13689
Q ss_pred EEEeCCCcccccchhhhheecccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSM----KSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 60 ~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++|||||++.|.......+..+|++++|+|+++. .+.+.+. .+. .+. ..|+++|+||+|+.+.
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~-~~~-----~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQ-IIG-----QKNIIIAQNKIELVDK 152 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHH-HHT-----CCCEEEEEECGGGSCH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcC-----CCcEEEEEECccCCCH
Confidence 9999999999887777778889999999999964 3333322 221 122 3479999999999875
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.72 E-value=4.8e-18 Score=131.25 Aligned_cols=116 Identities=30% Similarity=0.361 Sum_probs=79.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC----CCceeeEEEEEEE------------EECCeEEEEEEEeCCCccc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEV------------QFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~ 69 (156)
.+.++|+++|.+++|||||+++|.+....... .++.+..+..... ..+.....+++|||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 45689999999999999999999865432211 1122221111000 0000112599999999999
Q ss_pred ccchhhhheecccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNS---MKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|..++...++.+|++++|||+++ +.+++.+.. +.. .++|+++|+||+|+...
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~ 137 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHG 137 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccc
Confidence 99999989999999999999999 555544332 211 17899999999999753
No 167
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.72 E-value=1.3e-17 Score=120.78 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEe
Q 031598 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGN 125 (156)
Q Consensus 56 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 125 (156)
.+.+++|||+|++.++..|..+++.++++++|||++ +..++.+...|+..+..... ..++|+++|+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence 378999999999999999999999999999999998 67788888888877764322 23789999999
Q ss_pred cCCCCCC
Q 031598 126 KIDVDGG 132 (156)
Q Consensus 126 K~Dl~~~ 132 (156)
|+|+.++
T Consensus 237 K~DL~~e 243 (340)
T 4fid_A 237 KMDLFEE 243 (340)
T ss_dssp CHHHHHH
T ss_pred Cchhhhh
Confidence 9999764
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.6e-18 Score=130.10 Aligned_cols=123 Identities=20% Similarity=0.225 Sum_probs=80.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC-------------------------------CCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY-------------------------------KATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|.+++|||||+++|++....-.. .+..+.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 345789999999999999999999866321110 0112222222333333
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
...+++|||||+..+.......++.+|++++|||+++... +.....+...+..... .. ..|+++|+||+|+.
T Consensus 244 --~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg--i~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 --RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG--IHNLIIAMNKMDNV 318 (611)
T ss_dssp --SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT--CCEEEEEEECTTTT
T ss_pred --CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC--CCeEEEEEeccccc
Confidence 3689999999999999898999999999999999997531 1001111222211111 10 23599999999998
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
+.
T Consensus 319 ~~ 320 (611)
T 3izq_1 319 DW 320 (611)
T ss_dssp TT
T ss_pred ch
Confidence 74
No 169
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.72 E-value=8.2e-18 Score=125.07 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=82.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC--------CCCCC-------CCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--------KFSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
.+..++|+++|.+++|||||+++|.+. .+... .....+.+.......+......+++|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999863 11100 000111222222233333346799999999999
Q ss_pred ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCC
Q 031598 70 FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDG 131 (156)
Q Consensus 70 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 131 (156)
|.......++.+|++++|+|+++....+. .+++..+.. . ++| +++|+||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-~------~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-V------GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-T------TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCEEEEEEECccccC
Confidence 98888888999999999999998654333 344443322 1 667 899999999985
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.71 E-value=3.2e-18 Score=128.98 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=79.1
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC-----------------------------CCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ-----------------------------YKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|.+++|||||+++|++. .+... .....+.+.....+..
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~- 82 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-
Confidence 456799999999999999999999854 11100 0011112222223333
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCCCCCc-EEEEEec
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SFD---NLNNWREEFLIQASPSDPDNFP-FVVLGNK 126 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 126 (156)
....+++|||||+..|.......++.+|++++|||+++.. +|+ ...+.+. +.... ++| +++|+||
T Consensus 83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~-~~~~~------~v~~iivviNK 154 (458)
T 1f60_A 83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LAFTL------GVRQLIVAVNK 154 (458)
T ss_dssp -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HHHHT------TCCEEEEEEEC
T ss_pred -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHH-HHHHc------CCCeEEEEEEc
Confidence 3368999999999999888888999999999999999763 221 1111121 11111 555 9999999
Q ss_pred CCCCC
Q 031598 127 IDVDG 131 (156)
Q Consensus 127 ~Dl~~ 131 (156)
+|+.+
T Consensus 155 ~Dl~~ 159 (458)
T 1f60_A 155 MDSVK 159 (458)
T ss_dssp GGGGT
T ss_pred ccccc
Confidence 99984
No 171
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.71 E-value=1.5e-16 Score=116.00 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=64.3
Q ss_pred EEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCC
Q 031598 49 EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDNF 118 (156)
Q Consensus 49 ~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (156)
.+.+++ +.+.+|||+|++.++..|..+++.++++++|||+++ ..++.+...|+..+.... ...++
T Consensus 187 ~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~ 261 (353)
T 1cip_A 187 HFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDT 261 (353)
T ss_dssp EEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTS
T ss_pred EEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCC
Confidence 344444 789999999999999999999999999999999999 456888877777776421 12378
Q ss_pred cEEEEEecCCCCC
Q 031598 119 PFVVLGNKIDVDG 131 (156)
Q Consensus 119 p~ilv~nK~Dl~~ 131 (156)
|+++|+||+|+..
T Consensus 262 piiLv~NK~DL~~ 274 (353)
T 1cip_A 262 SIILFLNKKDLFE 274 (353)
T ss_dssp EEEEEEECHHHHH
T ss_pred cEEEEEECcCchh
Confidence 9999999999964
No 172
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.70 E-value=1.3e-16 Score=116.36 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=62.6
Q ss_pred eEEEEEEEeCCCcccccchhhhheecccEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Q 031598 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------SMKSFDNLNNWREEFLIQASPSDPDNFPFVVLG 124 (156)
Q Consensus 55 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 124 (156)
..+.+++|||+|++.++..|..+++.++++++|||++ +..++++...|+..+.... ...++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence 5689999999999999999999999999999999998 7788998888888776432 12378999999
Q ss_pred ecCCCCCC
Q 031598 125 NKIDVDGG 132 (156)
Q Consensus 125 nK~Dl~~~ 132 (156)
||+|+.++
T Consensus 258 NK~DL~~~ 265 (354)
T 2xtz_A 258 NKFDIFEK 265 (354)
T ss_dssp ECHHHHHH
T ss_pred ECcchhhh
Confidence 99999654
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=1.4e-16 Score=125.23 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=84.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC--CCCCC---C-------------CCceeeEEEEEEEEECCeEEEEEEEeCCC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK--KFSNQ---Y-------------KATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 66 (156)
..+.++|+++|.+++|||||+++|+.. ..... . .+..+.......+.+++ +.+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence 356799999999999999999999842 11100 0 00111111122233444 7899999999
Q ss_pred cccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+..+...+..+++.+|++++|+|+.+..+.+....|.. +.. . +.|+++|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~---~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----Y---GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----T---TCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----c---CCCEEEEEECCCcccc
Confidence 99999999999999999999999999877666554443 322 1 7799999999999875
No 174
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=1.9e-16 Score=124.65 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=83.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC--CCCC-----------C-----CCceeeEEEEEEEEEC-----CeEEEEEE
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK--FSNQ-----------Y-----KATIGADFLTKEVQFE-----DRLFTLQI 61 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i 61 (156)
..+.++|+++|..++|||||+++|+... .... . ....+.......+.++ +..+.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567999999999999999999997431 1100 0 0111111111222222 23378999
Q ss_pred EeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|||||+..|...+...++.+|++++|+|+++....+....|.. .. . . ++|+++|+||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~-~---~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---K-Y---KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---H-c---CCCEEEEEeCCCccccc
Confidence 9999999998899999999999999999998766555443332 21 1 1 78999999999998753
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=2.5e-16 Score=112.42 Aligned_cols=119 Identities=18% Similarity=0.322 Sum_probs=75.3
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC------CCcee--------------------eEE--------------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------KATIG--------------------ADF-------------- 45 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~--------------------~~~-------------- 45 (156)
...++|+|+|.+++|||||+++|.+.++.+.. .++.. .+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999988763211 12100 000
Q ss_pred -----------EEEEEEECCeEEEEEEEeCCCcc-------------cccchhhhheecccEEE-EEEECCChhhHHHHH
Q 031598 46 -----------LTKEVQFEDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNSMKSFDNLN 100 (156)
Q Consensus 46 -----------~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~~ 100 (156)
....+... ....+.+|||||.. .+......+++.++.++ +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00000001 12579999999954 23455566777777665 799998765433332
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+...+ .. .+.|+++|+||+|+.++
T Consensus 183 ~~~~~~----~~---~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 183 KIAKEV----DP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHH----CT---TCSSEEEEEECGGGSCT
T ss_pred HHHHHh----CC---CCCeEEEEEEccccCCC
Confidence 333333 22 26799999999999865
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=1.2e-17 Score=129.20 Aligned_cols=120 Identities=21% Similarity=0.263 Sum_probs=63.2
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC-------------------------------CCCCCCCceeeEEEEEEEEEC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------------------------------FSNQYKATIGADFLTKEVQFE 53 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 53 (156)
.+..++|+++|.+++|||||+++|+... ......+..+.+ .....+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid--~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMD--VASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEE--eeEEEEE
Confidence 4557899999999999999999996321 000011122222 2222233
Q ss_pred CeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh---hH--HHHHHHHHHHHHhcCCCCCCCCc-EEEEEecC
Q 031598 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK---SF--DNLNNWREEFLIQASPSDPDNFP-FVVLGNKI 127 (156)
Q Consensus 54 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 127 (156)
.....++||||||+..|.......++.+|++|+|||++++. .+ .........+.... ++| +++|+||+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l------gip~iIvviNKi 325 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL------GISEIVVSVNKL 325 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS------SCCCEEEEEECG
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc------CCCeEEEEEecc
Confidence 34478999999999999988888999999999999998642 11 10011111122222 555 99999999
Q ss_pred CCCCC
Q 031598 128 DVDGG 132 (156)
Q Consensus 128 Dl~~~ 132 (156)
|+.+.
T Consensus 326 Dl~~~ 330 (592)
T 3mca_A 326 DLMSW 330 (592)
T ss_dssp GGGTT
T ss_pred ccccc
Confidence 99863
No 177
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.67 E-value=4.6e-16 Score=119.37 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=85.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCC------------------C----CCCCCCceeeEEEEEEEEECCeEEEEEEEe
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKK------------------F----SNQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 63 (156)
.+.+||+|+|..++|||||..+|+... + ........+.......+.+++ +.++|+|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence 457999999999999999999996210 0 111111222222223344444 7899999
Q ss_pred CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|||+.+|.......++.+|++|+|+|+......+...-|..... + ++|.++++||+|....+
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~-~-------~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-R-------ATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-T-------TCCEEEEEECTTSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH-h-------CCceEEEEecccchhcc
Confidence 99999999999999999999999999999876666555544332 1 78999999999998864
No 178
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=3.4e-16 Score=117.49 Aligned_cols=117 Identities=26% Similarity=0.238 Sum_probs=75.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch-----------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------- 73 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 73 (156)
...++|+++|++|+|||||++++.+.... ....++.+.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 34689999999999999999999987632 111223333333455666764 6789999996432211
Q ss_pred -hhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 74 -GVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 74 -~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
...+++.+|++++++|+.+..+.... .+...+. . . +.|+++|+||+|+.++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~---~---~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R---R---GRASVVVFNKWDLVVH 307 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H---T---TCEEEEEEECGGGSTT
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H---c---CCCEEEEEECccCCCc
Confidence 12356779999999999986655432 2222221 1 1 6799999999999865
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=1.1e-16 Score=117.27 Aligned_cols=119 Identities=14% Similarity=0.217 Sum_probs=76.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE---EE-------------------------------------
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD---FL------------------------------------- 46 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~------------------------------------- 46 (156)
...+|+|+|++|||||||+++|.+..+.+......+.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999987632222211100 00
Q ss_pred --------------EEEEEECCeEEEEEEEeCCCcccc-------------cchhhhheecccEEEEEEECCChhhHHHH
Q 031598 47 --------------TKEVQFEDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNSMKSFDNL 99 (156)
Q Consensus 47 --------------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 99 (156)
...+.. .....+++|||||...+ ......+++.+|++++++|..+.....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~-~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYS-PNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEE-TTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeC-CCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 000000 01135899999997665 556667889999999999876543222
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 100 NNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..|...+ ..+.. .+.|+++|+||+|+.++
T Consensus 190 ~~~~~l~-~~~~~---~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKIS-REVDP---SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHH-HHSCT---TCTTEEEEEECGGGCCT
T ss_pred HHHHHHH-HHhcc---cCCCEEEEEeCCccCCC
Confidence 2233322 22222 26799999999999875
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=1.1e-16 Score=115.10 Aligned_cols=69 Identities=10% Similarity=0.178 Sum_probs=45.7
Q ss_pred EEEEEEeCCCccc-------------ccchhhhheecccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEE
Q 031598 57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVV 122 (156)
Q Consensus 57 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~il 122 (156)
..+.+|||||... +......+++.+|++++|+|..+.... .....+.. .+... +.|+++
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~----~~~~~---~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAK----EVDPE---GKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHH----HHCSS---CSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHH----HhCCC---CCcEEE
Confidence 4699999999653 445566678899999999997543211 11111222 22222 679999
Q ss_pred EEecCCCCCC
Q 031598 123 LGNKIDVDGG 132 (156)
Q Consensus 123 v~nK~Dl~~~ 132 (156)
|+||+|+.+.
T Consensus 204 v~NK~Dl~~~ 213 (315)
T 1jwy_B 204 VITKLDLMDK 213 (315)
T ss_dssp EEECTTSSCS
T ss_pred EEcCcccCCc
Confidence 9999999865
No 181
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=1.4e-16 Score=117.10 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=72.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEE
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d 89 (156)
+|+++|.+++|||||+++|..+ ..+ .+.... .+......+++|||||++.|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~------giT--i~~~~~--~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK------GTS--SDITMY--NNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE------EEE--SSSEEE--EECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhC------CEE--EEeeEE--EEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 9999999999999999999811 111 122222 233334679999999999998777888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEEe-cCCC
Q 031598 90 VNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLGN-KIDV 129 (156)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl 129 (156)
+.. .+....+++..+.. . ++|. ++|+| |+|+
T Consensus 93 -~~g-~~~qt~e~~~~~~~-~------~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 -PQG-LDAHTGECIIALDL-L------GFKHGIIALTRSDST 125 (370)
T ss_dssp -TTC-CCHHHHHHHHHHHH-T------TCCEEEEEECCGGGS
T ss_pred -CCC-CcHHHHHHHHHHHH-c------CCCeEEEEEEeccCC
Confidence 543 33333444443322 1 5677 89999 9999
No 182
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.66 E-value=8.3e-17 Score=123.58 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=78.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC---CCCCCceeeEEEEEEEE-------------------------------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS---NQYKATIGADFLTKEVQ------------------------------- 51 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~------------------------------- 51 (156)
....+|+|+|.+|+|||||+|+|++.++. ....++. +.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 45689999999999999999999998753 1112221 11110000
Q ss_pred -------ECCeE-EEEEEEeCCCccc-----------ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCC
Q 031598 52 -------FEDRL-FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASP 112 (156)
Q Consensus 52 -------~~~~~-~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~ 112 (156)
.++.. ..+.+|||||... +......++..+|++++|+|+++.........++..+ ..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~ 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL----RG 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT----TT
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH----Hh
Confidence 00000 2589999999764 3355566788999999999998854444444454443 22
Q ss_pred CCCCCCcEEEEEecCCCCCC
Q 031598 113 SDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 113 ~~~~~~p~ilv~nK~Dl~~~ 132 (156)
. +.|+++|+||+|+.++
T Consensus 217 ~---~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 H---EDKIRVVLNKADMVET 233 (550)
T ss_dssp C---GGGEEEEEECGGGSCH
T ss_pred c---CCCEEEEEECCCccCH
Confidence 1 5799999999999864
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.66 E-value=1.6e-16 Score=128.95 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=80.5
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCC-------CCC-------CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
....++|+++|..++|||||+++|.+.. +.. ....+.+.+.......++.....+++|||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4557999999999999999999998631 000 00112222222222333344468999999999999
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDVDGG 132 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 132 (156)
.......++.+|++++|||+++....+. .+++..+.. . ++| +++|+||+|+.++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~-l------gIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ-V------GVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH-H------TCSCEEEEEECCTTCCC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH-c------CCCeEEEEEeecccccc
Confidence 8888888999999999999998644332 233333322 1 667 8999999999863
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=3.1e-16 Score=106.44 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=68.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccchhhh
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA 76 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 76 (156)
+..+|+++|++|+|||||++++.+..+.....++.+.+.....+.+++ .+.+|||||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 357899999999999999999998764333344444443333333333 478999999742 2222223
Q ss_pred he---ecccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 77 FY---RGADCCVLVYDVNSMKSFDN--LNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 77 ~~---~~~~~~l~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++ +.++++++++|+.++.++.. +..|.. . .+.|+++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~------~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D------SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H------TTCCEEEEEECGGGSCH
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H------cCCCeEEEEecccCCCc
Confidence 33 46899999999998655432 222221 1 16799999999999764
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.65 E-value=1e-15 Score=120.43 Aligned_cols=120 Identities=13% Similarity=0.232 Sum_probs=79.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCC-CCCceee------------EEE--------------------------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGA------------DFL-------------------------- 46 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~------------~~~-------------------------- 46 (156)
...++|+|+|.+++|||||+|+|.+.+.... ..++... +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3568999999999999999999998875322 1222210 000
Q ss_pred ---------------EEEEEECCeE--EEEEEEeCCCccc---ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHH
Q 031598 47 ---------------TKEVQFEDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEF 106 (156)
Q Consensus 47 ---------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~ 106 (156)
...+..+... ..+.+|||||... .......+++.+|++++|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0000011000 2589999999554 3345567788999999999999887766654444332
Q ss_pred HHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 107 LIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 107 ~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
... +.|+++|+||+|+..+
T Consensus 227 ----~~~---~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 ----KGR---GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ----TTS---CCCEEEEEECGGGGGG
T ss_pred ----Hhh---CCCEEEEEECcccccc
Confidence 221 5689999999999754
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=1.5e-15 Score=112.53 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE--V-------------------QFED-RLFTLQIWDTAG 66 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g 66 (156)
++|+++|.+++|||||+|+|.+........+..+.+..... + .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 48999999999999999999987632111111111111111 1 1122 246899999999
Q ss_pred cccc----cchh---hhheecccEEEEEEECCCh
Q 031598 67 QERF----QSLG---VAFYRGADCCVLVYDVNSM 93 (156)
Q Consensus 67 ~~~~----~~~~---~~~~~~~~~~l~v~d~~~~ 93 (156)
.... ..+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 2222 2456889999999999875
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.61 E-value=1.5e-15 Score=119.04 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=80.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCC------------------CCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
.+..+|+++|+.|+|||||+++|.+....... ....+.......+... .+.+++|||||+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 45689999999999999999999843221000 0011111222233333 378999999999
Q ss_pred ccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 68 ERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
..+...+..+++.+|++++|+|..+....... .++..+.. . ++|+++|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----L---GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----T---TCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----c---cCCEEEEecCCchh
Confidence 99998899999999999999998876543332 33333322 1 78999999999998
No 188
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=6.4e-15 Score=116.26 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=85.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC--------CC----------CCCCCCceeeEEEEEEEEEC-----CeEEEEEEE
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK--------KF----------SNQYKATIGADFLTKEVQFE-----DRLFTLQIW 62 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 62 (156)
.+.+||+|+|..++|||||..+|+.. +. ..+.....+.......+.+. ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 56799999999999999999998621 10 00111111111112222222 235899999
Q ss_pred eCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
|||||.+|.......++.+|++|+|+|+...-..+...-|.+.... ++|.++|+||+|....+
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--------~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--------GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--------TCCEEEEEECSSSTTCC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--------CCCeEEEEccccccCcc
Confidence 9999999999999999999999999999997766665555555432 78999999999998764
No 189
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.4e-14 Score=106.25 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=82.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cchhhhhee
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYR 79 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 79 (156)
...+|+++|.|++|||||+|+|.+.+......+..+.+.....+.+++ .+++++||||-..- .......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 347899999999999999999998875544455555666667777777 67899999994322 122234567
Q ss_pred cccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 80 GADCCVLVYDVNSMKSF-DNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.+|++++|+|+++|..- +.+...+..+...+ ...|.+++.||.|....
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-----~~k~~~i~~nK~d~~gi 197 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIRL-----NKTPPDILIKKKEKGGI 197 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-----TCCCCCEEEEECSSSCE
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhhHhh-----ccCChhhhhhHhhhhhh
Confidence 89999999999997532 22222222221111 15688999999998653
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.54 E-value=1.1e-14 Score=106.43 Aligned_cols=29 Identities=24% Similarity=0.602 Sum_probs=25.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~ 34 (156)
....+|+|+|.+++|||||+++|.+.++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34579999999999999999999988763
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=7.7e-14 Score=101.85 Aligned_cols=84 Identities=23% Similarity=0.127 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ-- 71 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 71 (156)
++|+++|.+++|||||+++|.+........+..+.+.....+.+++. ...+++|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987632211221111111222333332 1479999999976542
Q ss_pred -----chhhhheecccEEEEEEECCC
Q 031598 72 -----SLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 72 -----~~~~~~~~~~~~~l~v~d~~~ 92 (156)
......++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222335789999999999986
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.52 E-value=1.1e-15 Score=119.18 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=84.2
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC--CCC---CCC-----------CCceeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK--KFS---NQY-----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~--~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 70 (156)
+.+||+|+|..++|||||..+|+.. ... ... ....+.+......++...++.++|+|||||.+|
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 3578999999999999999999621 100 000 000112222222333344578999999999999
Q ss_pred cchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 71 QSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 71 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.......++.+|++++|+|+...-..+.-.-|...... ++|.++++||+|....+
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--------~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--------GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--------TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--------CCCeEEEEeccccccCC
Confidence 99999999999999999999987655554444443321 77999999999998764
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=106.31 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCccccc-------c
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S 72 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~ 72 (156)
.++|+++|++|+|||||+++|.+....... .++.............+....+++||++|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 578999999999999999999987653211 1111111111111222333478999999965431 1
Q ss_pred ------------------hhhhheecccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 73 ------------------LGVAFYRGADCCVLVYDVNSM-KSFDNLN-NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 73 ------------------~~~~~~~~~~~~l~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+...++..+++.+++|..... .++.... .|+..+ .. +.|+|+|+||+|+...
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L----~~----~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE----KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH----TT----TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH----hc----cCcEEEEEEcccCccH
Confidence 112334444443444443322 2333332 444444 21 6799999999999764
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=1.2e-14 Score=104.09 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=58.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC-CCCCCC--------CCceeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK-KFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERF 70 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 70 (156)
-.++|+++|++|+|||||++++.+. .++... .++.............+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3589999999999999999998875 332221 011111111111122333468999999997 444
Q ss_pred cchhh-------hheec-------------ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 71 QSLGV-------AFYRG-------------ADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 71 ~~~~~-------~~~~~-------------~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
..... .+++. +++++++.+... .+++... .+.+.. +.. ..|+++|+||+|+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~-l~~----~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKA-IHN----KVNIVPVIAKADTL 168 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHH-HTT----TSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHH-HHh----cCCEEEEEEeCCCC
Confidence 44433 33322 234555544322 1233322 122222 221 57899999999998
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
.+
T Consensus 169 ~~ 170 (301)
T 2qnr_A 169 TL 170 (301)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.48 E-value=1.7e-13 Score=101.89 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccc----cchhhh---heeccc
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVA---FYRGAD 82 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~~ 82 (156)
.|+++|++|+|||||++++.+....-...+..+.......+..++ ...+.+||+||.... ..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998753111111111112223333333 246899999996432 112122 235689
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 83 CCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 83 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++.++|++ ...+..+..+..++..+... ....|.++|+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~a--L~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPA--LLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHH--HHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHH--hhcCCEEEEEECCChhhH
Confidence 999999998 55666676666666554210 015689999999999853
No 196
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.46 E-value=5.6e-13 Score=98.50 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=68.1
Q ss_pred EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (156)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (156)
..+.+++ +.+++|||+|++.++..|..+++.++++++|||+++ ..+|.++..|+..+.... ...+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~ 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence 3445555 789999999999999999999999999999999999 889999999988876432 2237
Q ss_pred CcEEEEEecCCCCCC
Q 031598 118 FPFVVLGNKIDVDGG 132 (156)
Q Consensus 118 ~p~ilv~nK~Dl~~~ 132 (156)
+|++||+||+|+.++
T Consensus 285 ~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 285 ISVILFLNKQDLLAE 299 (402)
T ss_dssp CCEEEEEECHHHHHH
T ss_pred CeEEEEEEChhhhhh
Confidence 899999999999654
No 197
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.43 E-value=7e-13 Score=97.04 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=59.3
Q ss_pred EEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 031598 48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNS----------MKSFDNLNNWREEFLIQASPSDPDN 117 (156)
Q Consensus 48 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (156)
..+.+++ +.+.+|||+|++.++..|..+++.++++++|||+++ ..++.+...|+..+.... ...+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~ 268 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSN 268 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTT
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCC
Confidence 3445554 789999999999999999999999999999999999 778888888888776431 1237
Q ss_pred CcEEEEEecCCCCC
Q 031598 118 FPFVVLGNKIDVDG 131 (156)
Q Consensus 118 ~p~ilv~nK~Dl~~ 131 (156)
+|+++|+||+|+.+
T Consensus 269 ~piILv~NK~DL~~ 282 (362)
T 1zcb_A 269 VSIILFLNKTDLLE 282 (362)
T ss_dssp SEEEEEEECHHHHH
T ss_pred CCEEEEEEChhhhh
Confidence 89999999999964
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.37 E-value=1.6e-12 Score=95.24 Aligned_cols=84 Identities=23% Similarity=0.141 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER 69 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 69 (156)
++|+++|.+|+|||||++++.+........+..+.........+++ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999987642111111111111111122221 235799999999765
Q ss_pred cc-------chhhhheecccEEEEEEECCC
Q 031598 70 FQ-------SLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 70 ~~-------~~~~~~~~~~~~~l~v~d~~~ 92 (156)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 222345789999999999986
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.35 E-value=6.2e-13 Score=98.00 Aligned_cols=88 Identities=20% Similarity=0.133 Sum_probs=50.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCcccccc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQS 72 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~ 72 (156)
..+|+++|.+|+|||||++++.+........++.+.+.....+.+++. ...+++|||||......
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 478999999999999999999987653222233222222333333331 23599999999765432
Q ss_pred -------hhhhheecccEEEEEEECCChhh
Q 031598 73 -------LGVAFYRGADCCVLVYDVNSMKS 95 (156)
Q Consensus 73 -------~~~~~~~~~~~~l~v~d~~~~~~ 95 (156)
.+..+++.+|++++|+|+.+..+
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 45567789999999999986443
No 200
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.33 E-value=1e-11 Score=98.11 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=72.4
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceee------------------------------------------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA------------------------------------------ 43 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~------------------------------------------ 43 (156)
....+|+|+|..++|||||+|+|.+..+-+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45689999999999999999999998762111111100
Q ss_pred ---------EEEEEEEEECCeEEEEEEEeCCCccc-------------ccchhhhhe-ecccEEEEEEECCChhhHHHHH
Q 031598 44 ---------DFLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNSMKSFDNLN 100 (156)
Q Consensus 44 ---------~~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~ 100 (156)
......+..++ ...+.++||||... +..+...++ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00011111111 12578999999433 122223333 5789999999998753322221
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCCC
Q 031598 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGGN 133 (156)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 133 (156)
.+...+ ... +.|+++|+||+|+.++.
T Consensus 208 ~ll~~L----~~~---g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 208 KIAKEV----DPQ---GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHH----CTT---CSSEEEEEECTTSSCTT
T ss_pred HHHHHH----Hhc---CCCEEEEEeCcccCCcc
Confidence 223322 222 67999999999998653
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.31 E-value=5.6e-13 Score=95.46 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=77.5
Q ss_pred HHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccchhhhheecccEEEEEEECCChh-hHHHHH
Q 031598 23 SLMNQYVNKKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLN 100 (156)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~ 100 (156)
+++.++....+. ..+.++.+..+. .. ..... .+.+||+ ++.+..++..+++.+|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577788877777 777888885443 22 22222 7899999 8899999999999999999999999987 788888
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 101 NWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.|+..+.. .++|+++|+||+|+.++
T Consensus 106 ~~l~~~~~-------~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 106 KFLVLAEK-------NELETVMVINKMDLYDE 130 (301)
T ss_dssp HHHHHHHH-------TTCEEEEEECCGGGCCH
T ss_pred HHHHHHHH-------CCCCEEEEEeHHHcCCc
Confidence 88887643 17899999999999865
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.24 E-value=1e-12 Score=96.16 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=41.9
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+.++||||... .....+..+|++++|+|....+....+. ......|+++|+||+|+...
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcCh
Confidence 6789999999432 2334458899999999987654432221 01114589999999999753
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.21 E-value=2.2e-11 Score=88.84 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.2
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+.+.++||+|.... .......+|++++|+|.+.+...+.+.. .+ . ..|.++|+||+|+.+
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l------~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I------EMADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------C------CSCSEEEECCCSGGG
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H------hcCCEEEEeeecCCC
Confidence 56899999995322 2334578999999999987543221111 11 1 457899999999974
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.17 E-value=7.3e-11 Score=82.49 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=41.4
Q ss_pred EEEEEEeCCCcccccchhh------hheecccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCCcEEEEEecC
Q 031598 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKS---FDNLNNWREEFLIQASPSDPDNFPFVVLGNKI 127 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 127 (156)
+.+.+|||||......... ..+.. +++++++|...... +.....+........ +.|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~------~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc------CCCeEEEEecc
Confidence 5799999999876533221 23455 88888888764322 222111111111111 57999999999
Q ss_pred CCCCC
Q 031598 128 DVDGG 132 (156)
Q Consensus 128 Dl~~~ 132 (156)
|+...
T Consensus 182 D~~~~ 186 (262)
T 1yrb_A 182 DLLSE 186 (262)
T ss_dssp GGCCH
T ss_pred ccccc
Confidence 99864
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.15 E-value=9.3e-12 Score=84.93 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=61.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeE--------------EEEEEEEE----------------CCeE
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--------------FLTKEVQF----------------EDRL 56 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 56 (156)
+..+|+++|.+|+|||||+++|...............+ ........ ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998652111000000000 00001100 0112
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+.+.+|||+|+.... ..+....+.+++|+|+.+.... ...+.... +.|+++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCc
Confidence 467899999851111 0111246789999998765321 11111111 468899999999964
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=1.1e-11 Score=90.12 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=38.7
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
+.+.++||||...... .....+|++++|+|.+....++.+.. .. .+.|.++|+||+|+.+.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCCh
Confidence 5799999999654432 24588999999999876543211110 00 04578999999999764
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=4.6e-10 Score=82.85 Aligned_cols=85 Identities=20% Similarity=0.199 Sum_probs=57.6
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER-- 69 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 69 (156)
..+++++|++|+|||||++.|.+... .....|+.+.+.....+.+++. ...+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47899999999999999999998764 2222333223333333444431 13689999999432
Q ss_pred -----ccchhhhheecccEEEEEEECCC
Q 031598 70 -----FQSLGVAFYRGADCCVLVYDVNS 92 (156)
Q Consensus 70 -----~~~~~~~~~~~~~~~l~v~d~~~ 92 (156)
+...+...++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345556788999999999874
No 208
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=8.5e-11 Score=86.35 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=65.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC-----CCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------hhh
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK-----KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGV 75 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~ 75 (156)
.+++++|.+|+|||||+|++.+. .... .....+++.......... .+.++||||...... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 57999999999999999999976 2111 111112223333333333 378999999432221 111
Q ss_pred hhe--ecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFY--RGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~--~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+ +..+.++++++......+..+.. ...+.. .+.|+++++||+|....
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~---~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKG---GRRSFVCYMANELTVHR 289 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEES---SSEEEEEEECTTSCEEE
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-----EEEccC---CCceEEEEecCCccccc
Confidence 121 56799999998753311111110 111121 26799999999998754
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=76.79 Aligned_cols=24 Identities=29% Similarity=0.779 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
++++++|++|+|||||++.+.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=1.2e-08 Score=75.98 Aligned_cols=60 Identities=25% Similarity=0.429 Sum_probs=34.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCC----CCceeeEEEEEEEEECCeEEEEEEEeCCCc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 67 (156)
.++++++|++|+|||||++.+.+..+.... .+..............+-...++++|++|.
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 367999999999999999999987532111 111111111111221222247899999984
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.91 E-value=2.9e-11 Score=82.72 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~ 34 (156)
+.++|+++|.+|+|||||+++|....+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999876543
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.89 E-value=2.4e-10 Score=83.95 Aligned_cols=113 Identities=13% Similarity=0.147 Sum_probs=64.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCC-----CCCCceeeEEEEEEEEECCeEEEEEEEeCCCcccccch--------hh
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GV 75 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 75 (156)
.+++++|.+|+|||||+|++.+..... ......+++........... +.++||||......+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999763211 11222223333333333332 789999995332211 11
Q ss_pred hh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.. .+..+..+++++......+..+.. ...+.. .+.|+++|+||+|....
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~---~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSG---GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEES---SSEEEEEEECTTSCEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----EEEecC---CCceEEEEecCcccccc
Confidence 11 255688888888743211111100 111121 26799999999999764
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.86 E-value=7.3e-10 Score=80.45 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDG 131 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 131 (156)
+.+.++||+|..... ......+|.+++++|....+..+.+... +. ..+.++|+||+|+..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccC
Confidence 578999999964322 2234678999999998654322111111 11 235577889999754
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.77 E-value=2.8e-08 Score=75.52 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=63.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHh------cCCCC----CCCCCce-----------eeEEEEEEEE-------------
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYV------NKKFS----NQYKATI-----------GADFLTKEVQ------------- 51 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~------------- 51 (156)
.+...|+++|.+|+||||+++.|. +.+.. +.+.+.. +.+.......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 33210 0101100 0111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-hh---hhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEE
Q 031598 52 FEDRLFTLQIWDTAGQERFQS-LG---VAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF-VVLG 124 (156)
Q Consensus 52 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~ 124 (156)
.....+.+.|+||||...... .+ ... ...+|.+++|+|+....... .....+.. ..|+ ++|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVl 247 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIV 247 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEE
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEE
Confidence 000235799999999653221 11 111 12689999999998754311 11222322 1364 8999
Q ss_pred ecCCCCCC
Q 031598 125 NKIDVDGG 132 (156)
Q Consensus 125 nK~Dl~~~ 132 (156)
||+|....
T Consensus 248 NK~D~~~~ 255 (504)
T 2j37_W 248 TKLDGHAK 255 (504)
T ss_dssp ECTTSCCC
T ss_pred eCCccccc
Confidence 99999754
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.69 E-value=1.9e-08 Score=71.26 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=36.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 68 (156)
...++++++|.+|+|||||+|++.+...... ....+++.....+.... .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT-GDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec-CCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3568999999999999999999998764322 22222222222232322 58899999954
No 216
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.66 E-value=2.6e-08 Score=67.22 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=43.6
Q ss_pred CCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEEecC-CCCCC
Q 031598 65 AGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNKI-DVDGG 132 (156)
Q Consensus 65 ~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~-Dl~~~ 132 (156)
.|+..++..|..|+..+|++|||+|++|.+.++ ....+..+...+.... ..+.|++|++||. |++..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 378899999999999999999999999986554 3333333344444332 3588999999995 78654
No 217
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1.1e-08 Score=71.69 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 69 (156)
.+++++|.+|+|||||+|++.+...... .+..+.+.....+..+ ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5899999999999999999998765322 2333333322222222 2578999999654
No 218
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.54 E-value=1.3e-07 Score=73.68 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
..++|+|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 458999999999999999999874
No 219
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.50 E-value=3e-07 Score=65.76 Aligned_cols=59 Identities=20% Similarity=0.073 Sum_probs=48.3
Q ss_pred cccccchhhhheecccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 67 QERFQSLGVAFYRGADCCVLVYDVNSMK-SFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
++.+..+...+++.+|++++|||++++. ++..+..|+..+.. .++|+++|+||+|+.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc
Confidence 5556666777899999999999999986 88888888876543 17899999999999865
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.41 E-value=2.8e-07 Score=71.31 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=39.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcCCCC-CCCCCceeeEEEEEEE--EE-CCeEEEEEEEeCCCccc
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEV--QF-EDRLFTLQIWDTAGQER 69 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 69 (156)
..+..+|+|+|.+++|||||+|+|.+.... .....+.+.+.....+ .. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 345689999999999999999999987632 1111111111111111 11 11224788999999543
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.40 E-value=1.2e-06 Score=65.13 Aligned_cols=112 Identities=16% Similarity=0.288 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCce-eeEE--EEEEEEECCeEEEEEEEeCCCcccccchhhhh-----ee
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF-----YR 79 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 79 (156)
...++++|++|+|||||++.+.+...+....... +.+. .....+... ...++++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3578999999999999999999854322111111 1110 011111111 1257899999843221111222 23
Q ss_pred cccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 80 GADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 80 ~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
..+..++ ++..... -+.+ .....+.. . +.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~-~------~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KNDI-DIAKAISM-M------KKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCC-HHHH-HHHHHHHH-T------TCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCcc-HHHH-HHHHHHHh-c------CCCeEEEEecCccc
Confidence 3455554 6765211 1111 11222221 1 67999999999874
No 222
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.33 E-value=1.2e-07 Score=66.93 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=45.7
Q ss_pred CCCcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEEec-CCCCCC
Q 031598 64 TAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSD-PDNFPFVVLGNK-IDVDGG 132 (156)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK-~Dl~~~ 132 (156)
.+||..++..|..|+..+|++|+|+|++|.+.++ ....+..+...+.... ..+.|++|++|| .|+++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 4578899999999999999999999999987654 2222222222221111 127899999997 588754
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.28 E-value=1.3e-06 Score=65.44 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=39.3
Q ss_pred EEEEEEeCCCcccccchhh------hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-c-EEEEEecCC
Q 031598 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNF-P-FVVLGNKID 128 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D 128 (156)
+.+.|+||||......... ..+..+|.+++|+|+..... .......+. . .. | ..+|.||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~---~-----~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK---E-----AVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH---T-----TSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh---h-----cccCCeEEEEeCCC
Confidence 5689999999654211111 11235899999999876532 112222221 1 34 5 789999999
Q ss_pred CCCC
Q 031598 129 VDGG 132 (156)
Q Consensus 129 l~~~ 132 (156)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.25 E-value=3.3e-06 Score=63.21 Aligned_cols=66 Identities=18% Similarity=0.045 Sum_probs=39.8
Q ss_pred EEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVD 130 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 130 (156)
+.+.|+||+|.......... ....+|.+++|+|+........ ....+... -.+..+|.||+|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEECCCCc
Confidence 57889999994432211111 1234789999999987543222 22333322 22567999999997
Q ss_pred CC
Q 031598 131 GG 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.00 E-value=1.1e-06 Score=65.59 Aligned_cols=66 Identities=20% Similarity=0.102 Sum_probs=39.1
Q ss_pred EEEEEEeCCCccc--ccc----hhhhh--eecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCC
Q 031598 57 FTLQIWDTAGQER--FQS----LGVAF--YRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKID 128 (156)
Q Consensus 57 ~~~~i~D~~g~~~--~~~----~~~~~--~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 128 (156)
+.+.++||||... ... ..... ....+.+++|+|+....... .....+.... .+..+|.||+|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEeccc
Confidence 5688999999543 111 11111 12358999999998754322 2233443322 25689999999
Q ss_pred CCCC
Q 031598 129 VDGG 132 (156)
Q Consensus 129 l~~~ 132 (156)
....
T Consensus 250 ~~a~ 253 (433)
T 3kl4_A 250 GTAK 253 (433)
T ss_dssp GCSC
T ss_pred cccc
Confidence 8643
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.94 E-value=1.3e-05 Score=57.06 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=39.2
Q ss_pred EEEEEEeCCCccc--ccchhh------hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecC
Q 031598 57 FTLQIWDTAGQER--FQSLGV------AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKI 127 (156)
Q Consensus 57 ~~~~i~D~~g~~~--~~~~~~------~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~ 127 (156)
+.+.++||||... ...... .....+|.+++|+|..... ........+.. ..| ..+|.||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence 5689999999765 211111 1234689999999987532 12222233322 234 67899999
Q ss_pred CCCCC
Q 031598 128 DVDGG 132 (156)
Q Consensus 128 Dl~~~ 132 (156)
|....
T Consensus 250 D~~~~ 254 (297)
T 1j8m_F 250 DGTAK 254 (297)
T ss_dssp GGCTT
T ss_pred CCCcc
Confidence 98643
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.82 E-value=8.5e-06 Score=59.79 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=44.7
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+.|...+..+.+.++++++|+|+.++. ..|...+.++.. +.|+++|+||+|+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCc
Confidence 45778888888889999999999999864 345555555543 6799999999999765
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.78 E-value=0.0002 Score=53.80 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=22.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+..-|.|+|++++|||||+|.|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345677899999999999999999853
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.77 E-value=9.5e-07 Score=66.78 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=53.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCCCCCCCCCceeeEEEE---EEEEECCeEEEEEEEeCCCccc--ccchh-------
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT---KEVQFEDRLFTLQIWDTAGQER--FQSLG------- 74 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~--~~~~~------- 74 (156)
....|+++|.+||||||+.++|...-.. .....+... ......+......+||..|... ....+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~----~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNF----IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhc----cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999998754210 011111100 0000011112345788888632 22222
Q ss_pred -hhheecccEEEEEEECCChhhHHHHHHHHHHHH
Q 031598 75 -VAFYRGADCCVLVYDVNSMKSFDNLNNWREEFL 107 (156)
Q Consensus 75 -~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~ 107 (156)
..++...++.++|+|.++. .......|+..+.
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 4455557888999999987 3444455555443
No 230
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.74 E-value=0.00016 Score=54.11 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEEEeCCCcccccchhhh------heecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEecCCC
Q 031598 57 FTLQIWDTAGQERFQSLGVA------FYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFP-FVVLGNKIDV 129 (156)
Q Consensus 57 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 129 (156)
+.+.|+||||.......... .+..++.+++|+|+...... ......+.. ..+ .-+|.||+|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~--------~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE--------ALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH--------HSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc--------cCCCeEEEEecCCC
Confidence 57899999996543211111 13357899999998764322 122223322 123 3479999998
Q ss_pred CCC
Q 031598 130 DGG 132 (156)
Q Consensus 130 ~~~ 132 (156)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=2.1e-05 Score=51.86 Aligned_cols=22 Identities=50% Similarity=0.919 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988755
No 232
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.67 E-value=1.2e-05 Score=58.95 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=43.8
Q ss_pred CcccccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 66 GQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 66 g~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.++.|...+..+.+.++++++|+|+.++.+ .|...+.+++. +.|+++|+||+|+.+.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCC
Confidence 477888888888899999999999999763 34444444443 6799999999999865
No 233
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.63 E-value=3.4e-05 Score=54.56 Aligned_cols=62 Identities=19% Similarity=-0.006 Sum_probs=41.0
Q ss_pred EEeCCCcc-cccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 61 i~D~~g~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
|-..||+. .........++.+|+++.|+|+.+|.+.... .+.+++. +.|.++|+||+|+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~-----~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILK-----NKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCS-----SSCEEEEEECGGGSCH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHC-----CCCEEEEEECcccCCH
Confidence 44678876 4455666778999999999999998765421 1222222 7799999999999864
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.63 E-value=2.8e-05 Score=51.17 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999864
No 235
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.62 E-value=4e-05 Score=49.94 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=22.3
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
|.........|+++|++||||||+++.+.+
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333444456789999999999999998764
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.58 E-value=3.6e-05 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3579999999999999999875
No 237
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.52 E-value=4.6e-05 Score=50.37 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
++++|++||||||+++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999854
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=2.3e-05 Score=56.03 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-.++++|++|+|||||+|.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 367999999999999999998764
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.52 E-value=5e-05 Score=50.68 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999864
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.49 E-value=6e-05 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.49 E-value=5.4e-05 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46899999999999999987643
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=0.00025 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|+|||||++.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 56899999999999999998 54
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.46 E-value=6.5e-05 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.45 E-value=6.4e-05 Score=51.06 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999988643
No 245
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.45 E-value=8.5e-05 Score=49.41 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
|.+...+...|++.|.+||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4555666788999999999999999998765
No 246
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.45 E-value=9e-05 Score=49.67 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=23.5
Q ss_pred CCcccceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 1 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
|++...+...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333334456799999999999999998864
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.44 E-value=7.3e-05 Score=48.77 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=16.6
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 031598 10 KVIILGDSGVGKTSLMNQY 28 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l 28 (156)
-++++|++|||||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999999943
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=9.7e-05 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...++|+|++|||||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999987643
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=8.9e-05 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.-|+++|++||||||+++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999998654
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.40 E-value=8.5e-05 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+++|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45789999999999999999854
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.39 E-value=9.9e-05 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.38 E-value=9.4e-05 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998764
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.35 E-value=0.00011 Score=47.47 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998754
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=0.00012 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35799999999999999998754
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.34 E-value=0.00012 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.34 E-value=0.00012 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
..++++|++||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998654
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00013 Score=47.22 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.31 E-value=0.00013 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCChhHHHHHH
Q 031598 9 LKVIILGDSGVGKTSLMNQY 28 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l 28 (156)
.-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.31 E-value=0.00012 Score=50.00 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.29 E-value=0.00013 Score=48.09 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999975
No 261
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.29 E-value=0.00015 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~ 29 (156)
...|+++|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=0.00019 Score=46.75 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.28 E-value=0.00015 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998764
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.28 E-value=0.00015 Score=48.42 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|+++|++||||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.27 E-value=0.00016 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...|+++|++|||||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988653
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.27 E-value=0.00015 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.26 E-value=0.00015 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998764
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.26 E-value=0.00015 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998764
No 269
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.25 E-value=0.00017 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.25 E-value=0.00019 Score=47.26 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988754
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.24 E-value=0.00016 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.24 E-value=0.00017 Score=48.91 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998764
No 273
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.24 E-value=0.00017 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998764
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.23 E-value=0.00019 Score=52.36 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~ 33 (156)
.++++|++|+|||||++.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 579999999999999999997654
No 275
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.23 E-value=0.00021 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|.+||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.22 E-value=0.00017 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998764
No 277
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.22 E-value=0.00017 Score=48.09 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 278
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00028 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.21 E-value=0.00021 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 280
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.21 E-value=0.00021 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.21 E-value=0.00017 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.20 E-value=0.00019 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 46899999999999999998764
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.20 E-value=0.0002 Score=49.07 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998765
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.20 E-value=0.00019 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++++|++||||||+++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999998754
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00025 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998863
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.19 E-value=0.00027 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+.++|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998864
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.0002 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|+++|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 288
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.00018 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988754
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00022 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.0002 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998764
No 291
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00028 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 292
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.00023 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00021 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.17 E-value=0.00025 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 295
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.17 E-value=0.00022 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998765
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.17 E-value=0.00023 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999985
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.17 E-value=0.00022 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...|+++|++||||||+.+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999887643
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.17 E-value=0.00022 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+...|++.|.+||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998863
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00024 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..-++++|++|+|||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 346799999999999999999864
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.16 E-value=0.00023 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999986
No 301
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=0.00028 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~ 33 (156)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 468999999999999999997653
No 302
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.16 E-value=0.0002 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.+++.|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988754
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.15 E-value=0.00022 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 304
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.15 E-value=0.00025 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998764
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.15 E-value=0.00029 Score=46.42 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00036 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+...|++.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988863
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.14 E-value=0.00015 Score=49.53 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=14.8
Q ss_pred EEEEEcCCCCChhHHHHHHh-cC
Q 031598 10 KVIILGDSGVGKTSLMNQYV-NK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~-~~ 31 (156)
-++++|++||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 54
No 308
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.14 E-value=0.00027 Score=49.89 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998764
No 309
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.14 E-value=0.00027 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
++|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988864
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.14 E-value=0.00024 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++|+|++|+|||||++.+.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 35799999999999999988753
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.13 E-value=0.00027 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.13 E-value=0.00032 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
....|++.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 313
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.12 E-value=0.00035 Score=45.99 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988753
No 314
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.12 E-value=0.00027 Score=48.42 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 031598 10 KVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~ 29 (156)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999877
No 315
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00031 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998753
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.11 E-value=0.00026 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998765
No 317
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.11 E-value=0.00026 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998764
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00026 Score=50.75 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+..-++|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999998765
No 319
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.11 E-value=0.00027 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.10 E-value=0.00025 Score=51.77 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999999865
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.10 E-value=0.00034 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998863
No 322
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.0003 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 323
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.00025 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++++|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999863
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.08 E-value=0.00045 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...|+++|++||||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999864
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.08 E-value=0.0004 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00043 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...-|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999864
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.08 E-value=0.00023 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
....|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 328
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.07 E-value=0.00034 Score=48.91 Aligned_cols=23 Identities=48% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 329
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.06 E-value=0.00037 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=20.7
Q ss_pred ceeEEEEEEcCCCCChhHHHHHH
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQY 28 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l 28 (156)
.+..||+++|.++||||||+..+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999998876
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.05 E-value=0.00038 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...|++.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 331
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.05 E-value=0.00038 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...+|++.|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.05 E-value=0.00033 Score=51.06 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998765
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.04 E-value=0.00026 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.-+++|+|++|||||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999987653
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.04 E-value=0.0004 Score=44.71 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00057 Score=44.86 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988864
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.03 E-value=0.00035 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999998765
No 337
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.03 E-value=0.00036 Score=45.58 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999999998863
No 338
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00029 Score=46.01 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=16.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.03 E-value=0.00036 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998765
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.03 E-value=0.00036 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 36899999999999999998764
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.03 E-value=0.00014 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988863
No 342
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00048 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
...+-|+++|++|||||||++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999998875
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.02 E-value=0.00053 Score=48.64 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.9
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
..+...|+|.|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998764
No 344
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.01 E-value=0.00039 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999998765
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00063 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+...|++.|.+||||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 446789999999999999998864
No 346
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.00 E-value=0.00046 Score=47.55 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|+++|+.||||||+++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998865
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.00 E-value=0.0004 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36899999999999999998764
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.99 E-value=0.00039 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999999775
No 349
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.99 E-value=0.00048 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...+.++|.+||||||++.++..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.99 E-value=0.00035 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|+|||||++.+.+.-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988653
No 351
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00016 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999998865
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.00039 Score=48.84 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999875
No 353
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.99 E-value=0.00047 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.98 E-value=0.00038 Score=50.79 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++|+|++||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999988753
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.0004 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 356
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.96 E-value=0.00044 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998764
No 357
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.95 E-value=0.00059 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 358
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.00027 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 57999999999999999988654
No 359
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.94 E-value=0.0016 Score=46.62 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=35.4
Q ss_pred hheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 76 AFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 76 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
..+..+|.+++|+|+.+|..-.. .++.++..+... ++|.++|+||+||.++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~---~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEAN---DIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTT---TCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHC---CCCEEEEEECCccCch
Confidence 45788999999999998754332 222333222211 7799999999999876
No 360
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.93 E-value=0.00057 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999988754
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.93 E-value=0.00045 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998863
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.93 E-value=0.00067 Score=47.82 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHh
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
.+.+.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999886
No 363
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.0018 Score=46.68 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 031598 11 VIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~ 30 (156)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.92 E-value=0.00051 Score=45.96 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 365
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.92 E-value=0.00049 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|+|||||++.+.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998653
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.91 E-value=0.00055 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 367
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.91 E-value=0.00063 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+..-|+++|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998875
No 368
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.90 E-value=0.00061 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 369
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.90 E-value=0.00052 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.00062 Score=45.46 Aligned_cols=24 Identities=42% Similarity=0.313 Sum_probs=20.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+..-|+++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998864
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.90 E-value=0.00053 Score=47.60 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-|+++|++||||||+...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998864
No 372
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00049 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4689999999999999999865
No 373
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.89 E-value=0.0029 Score=45.41 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999999999999755
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.87 E-value=0.00033 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 36899999999999999998765
No 375
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.00099 Score=45.25 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999888763
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.86 E-value=0.00081 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998865
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.86 E-value=0.0005 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 378
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.86 E-value=0.00056 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998764
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.85 E-value=0.00049 Score=46.95 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..-|+|.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999998765
No 380
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.84 E-value=0.00072 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHh
Q 031598 9 LKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~ 29 (156)
..|+++|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999887
No 381
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.84 E-value=0.00057 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-.++++|++|||||||++.+.+.-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999998654
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.83 E-value=0.00073 Score=43.64 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.83 E-value=0.00064 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998753
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00064 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
--++++|+.||||||++..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4679999999999999998864
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00022 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.82 E-value=0.00087 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+.+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988754
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.79 E-value=0.00094 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988864
No 388
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.0023 Score=40.27 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 56899999999999999888754
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.78 E-value=0.0007 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.78 E-value=0.001 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998865
No 391
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.00074 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998873
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00083 Score=43.94 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988864
No 393
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00075 Score=47.30 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|+|||||++.+.+.-
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999998653
No 394
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.76 E-value=0.00074 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999998864
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.75 E-value=0.00034 Score=51.02 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999765
No 396
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.00099 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.71 E-value=0.0011 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+.--++++|++||||||++..+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998874
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.70 E-value=0.00083 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++|+|+.||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998654
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.69 E-value=0.0011 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+.|++.|++||||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.69 E-value=0.00074 Score=43.82 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 401
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.68 E-value=0.057 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.7
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
..+..-|.|+|+.++|||+|+|.|+
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3456777899999999999999654
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.68 E-value=0.0011 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 403
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.67 E-value=0.0015 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+..-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988753
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.65 E-value=0.0011 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.--++++|..|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3456899999999999999999664
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.64 E-value=0.0011 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-.+|+|+.|+||||++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998854
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.62 E-value=0.0011 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.--++++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34679999999999999998864
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.62 E-value=0.0011 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
--++++|++||||||++..|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4679999999999999998864
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00096 Score=50.34 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.++|+|+.|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 35899999999999999998765
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.61 E-value=0.001 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
-.|+++|++||||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 410
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.60 E-value=0.0013 Score=43.61 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+++.|++|+|||+|+..+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 411
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.0012 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999986
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.001 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999999988643
No 413
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.0018 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999988754
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.59 E-value=0.0012 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999875
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.0016 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
...|++.|.+||||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998764
No 416
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0013 Score=44.84 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999873
No 417
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.57 E-value=0.0013 Score=46.43 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 418
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.52 E-value=0.0016 Score=46.13 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3446799999999999999986653
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.002 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...|.+.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999999988654
No 420
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.52 E-value=0.0022 Score=44.71 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.0
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
......+++.|++|+|||++++.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999999999999864
No 421
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.0016 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+..+++.|++|+|||++++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788899999999999998754
No 422
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.0012 Score=44.48 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.+++.|++|+||||++.++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999888753
No 423
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.48 E-value=0.002 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+|.|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.48 E-value=0.0017 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.48 E-value=0.0017 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0016 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....+++.|++|+|||++++.+.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999765
No 427
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.46 E-value=0.0013 Score=45.77 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=21.5
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999888754
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.45 E-value=0.0016 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
+++++|++|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67999999999999999998765
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0018 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998764
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.45 E-value=0.0016 Score=49.41 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.++++|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998875
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.0017 Score=43.69 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 432
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.44 E-value=0.0016 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999885
No 433
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.40 E-value=0.0021 Score=40.50 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcCC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
....|++.|++|+|||++++.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999998654
No 434
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.40 E-value=0.0019 Score=42.97 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 435
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.39 E-value=0.003 Score=42.31 Aligned_cols=24 Identities=46% Similarity=0.684 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
..|+++|++|+|||+|...|..+-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998654
No 436
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.38 E-value=0.0018 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 57999999999999999998764
No 437
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.002 Score=48.18 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....|++.|+||+|||++++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999865
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.37 E-value=0.0024 Score=40.66 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHh
Q 031598 11 VIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~ 29 (156)
.+|+|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3899999999999999874
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.37 E-value=0.0021 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 356899999999999999999865
No 440
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.36 E-value=0.0021 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 441
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.36 E-value=0.0031 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..|+++|++||||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 442
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.36 E-value=0.0025 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.6
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
..+.+|++++|.+.|||||++..+.
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHHH
Confidence 3457999999999999999998764
No 443
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0022 Score=47.88 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|+||+|||++++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.002 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-++++|+.|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46899999999999999998764
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.33 E-value=0.0019 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999998764
No 446
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.32 E-value=0.0033 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+|+|++|||||||...+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999999754
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.32 E-value=0.0019 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998874
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.30 E-value=0.0021 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..-|+++|.+||||||+.+.+...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999998753
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0027 Score=43.37 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+...|+++|.+||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988764
No 450
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.30 E-value=0.0031 Score=45.17 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....+++.|++|+|||++++.+.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999764
No 451
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0023 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~~ 33 (156)
.++++|+.|+|||||++.+.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 479999999999999999987643
No 452
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.29 E-value=0.0022 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 67999999999999999998764
No 453
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0024 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....|++.|+||+|||++++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999865
No 454
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.28 E-value=0.0022 Score=45.82 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+++.|++|+|||++++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998754
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.25 E-value=0.0024 Score=49.11 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999765
No 456
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.24 E-value=0.019 Score=40.92 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
+++-|++|+|||++++.+.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 466677999999999999754
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.20 E-value=0.0034 Score=41.66 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 031598 10 KVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~ 30 (156)
.|++.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 458
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.20 E-value=0.0027 Score=43.41 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.5
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+..-|++.|++||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346689999999999999998864
No 459
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.19 E-value=0.0029 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...+++.|++|+|||++++.+.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999865
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.18 E-value=0.003 Score=49.29 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998764
No 461
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.18 E-value=0.0035 Score=42.90 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
..+++.++|++||||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999988753
No 462
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0029 Score=43.10 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 031598 10 KVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~ 29 (156)
-+++.|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999987775
No 463
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0033 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.16 E-value=0.0018 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999888654
No 465
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.16 E-value=0.0026 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~ 29 (156)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999998875
No 466
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0026 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 467
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0038 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988743
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.12 E-value=0.0032 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.12 E-value=0.0032 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 470
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.11 E-value=0.003 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998765
No 471
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.10 E-value=0.0012 Score=46.18 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=37.1
Q ss_pred CCCccc-ccchhhhheecccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEEecCCCCCC
Q 031598 64 TAGQER-FQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVVLGNKIDVDGG 132 (156)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 132 (156)
.||+.. ........++.+|+++.|+|+.+|.+.... .+. ++ +.|.++|+||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH
Confidence 466543 234556677899999999999998664321 111 11 6799999999999864
No 472
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0027 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
+...|++.|+||+|||++++.+.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999865
No 473
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.10 E-value=0.0033 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhc
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.--++++|++|+||||++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34679999999999999988763
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.09 E-value=0.0025 Score=49.54 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.++++|++|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999888654
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.08 E-value=0.0036 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.+++.|++|+||||+++.+.+.-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988653
No 476
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.08 E-value=0.0046 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCChhHHHHHHh
Q 031598 8 LLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~ 29 (156)
..+|+++|++|+||||+...+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999998664
No 477
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.06 E-value=0.0037 Score=45.72 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhHHHHHHh
Q 031598 11 VIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~ 29 (156)
++|+|+.|+||||+++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999875
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0036 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHhcCCC
Q 031598 11 VIILGDSGVGKTSLMNQYVNKKF 33 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~~~ 33 (156)
++++|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987653
No 479
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.03 E-value=0.0056 Score=41.78 Aligned_cols=25 Identities=44% Similarity=0.434 Sum_probs=20.4
Q ss_pred cceeEEEEEEcCCCCChhHHHHHHh
Q 031598 5 RRTLLKVIILGDSGVGKTSLMNQYV 29 (156)
Q Consensus 5 ~~~~~~i~v~G~~~~GKstli~~l~ 29 (156)
....++|++.|++|+||||+.-.+.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHH
Confidence 3456999999999999999966554
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.03 E-value=0.0043 Score=40.86 Aligned_cols=21 Identities=14% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhcC
Q 031598 11 VIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 11 i~v~G~~~~GKstli~~l~~~ 31 (156)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999855
No 481
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.02 E-value=0.0023 Score=45.35 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhc
Q 031598 9 LKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~ 30 (156)
+-|+|.|++||||||+.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999988753
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.02 E-value=0.0052 Score=41.50 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhc
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
+..-|++.|.+||||||+++.+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 346689999999999999998863
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.96 E-value=0.005 Score=40.34 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcCC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~~ 32 (156)
.-+++.|++|+||||+...|..+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 568999999999999999998654
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.95 E-value=0.0037 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcCC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNKK 32 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~~ 32 (156)
-+.++|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998653
No 485
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.94 E-value=0.0047 Score=44.26 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
-|+|.|++|||||||...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999754
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.93 E-value=0.0017 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+++.|++|+|||++++.+.+.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999998754
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.92 E-value=0.0043 Score=44.99 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
..+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.0043 Score=44.59 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcC
Q 031598 10 KVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 10 ~i~v~G~~~~GKstli~~l~~~ 31 (156)
.+++.|++|+||||+++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 489
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.91 E-value=0.0065 Score=43.94 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-|+|+|+.|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998754
No 490
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0039 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.1
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....|++.|+||+|||+|++.+.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4568999999999999999999864
No 491
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0047 Score=46.10 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...|++.|+||+|||++++++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 467999999999999999999865
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.0038 Score=45.29 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998754
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.87 E-value=0.0047 Score=44.93 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+.+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999864
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.86 E-value=0.0051 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988643
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.86 E-value=0.0048 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....+++.|++|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998754
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.86 E-value=0.0053 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||+|+..+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.84 E-value=0.0072 Score=41.15 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCCCChhHHHHHHhc
Q 031598 6 RTLLKVIILGDSGVGKTSLMNQYVN 30 (156)
Q Consensus 6 ~~~~~i~v~G~~~~GKstli~~l~~ 30 (156)
.+..-|++.|.+||||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998763
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.83 E-value=0.0051 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.9
Q ss_pred eeEEEEEEcCCCCChhHHHHHHhcC
Q 031598 7 TLLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 7 ~~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
....+++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999754
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.81 E-value=0.0048 Score=46.24 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCChhHHHHHHhcC
Q 031598 9 LKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 9 ~~i~v~G~~~~GKstli~~l~~~ 31 (156)
-.+++.|++|+|||||++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.81 E-value=0.0045 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCChhHHHHHHhcC
Q 031598 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (156)
Q Consensus 8 ~~~i~v~G~~~~GKstli~~l~~~ 31 (156)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
Done!