Query 031599
Match_columns 156
No_of_seqs 129 out of 1506
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 6E-20 1.3E-24 126.8 14.0 92 50-141 31-122 (144)
2 KOG0122 Translation initiation 99.8 2.6E-18 5.7E-23 124.5 12.5 106 29-134 163-270 (270)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.8E-17 3.8E-22 129.4 14.8 84 52-135 268-351 (352)
4 PF00076 RRM_1: RNA recognitio 99.7 4.6E-17 1E-21 98.4 9.9 70 56-126 1-70 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.5E-17 7.5E-22 127.8 11.4 82 53-134 3-84 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 8.9E-17 1.9E-21 125.2 11.6 85 49-133 103-187 (346)
7 KOG0125 Ataxin 2-binding prote 99.7 5.8E-17 1.3E-21 121.8 9.3 88 44-133 87-174 (376)
8 KOG0149 Predicted RNA-binding 99.7 8.8E-17 1.9E-21 116.1 7.4 79 52-131 11-89 (247)
9 KOG0117 Heterogeneous nuclear 99.7 7.3E-16 1.6E-20 119.9 11.2 105 45-152 75-180 (506)
10 TIGR01645 half-pint poly-U bin 99.7 7.3E-16 1.6E-20 126.7 11.1 81 51-131 105-185 (612)
11 PF14259 RRM_6: RNA recognitio 99.6 2.3E-15 5E-20 91.3 9.5 70 56-126 1-70 (70)
12 TIGR01659 sex-lethal sex-letha 99.6 2.7E-15 5.9E-20 117.0 11.7 83 52-134 192-276 (346)
13 KOG0121 Nuclear cap-binding pr 99.6 9.4E-16 2E-20 101.3 7.5 86 50-135 33-118 (153)
14 TIGR01645 half-pint poly-U bin 99.6 2.6E-15 5.6E-20 123.5 11.7 83 52-134 203-285 (612)
15 KOG4207 Predicted splicing fac 99.6 7.8E-16 1.7E-20 109.4 7.0 82 50-131 10-91 (256)
16 KOG0113 U1 small nuclear ribon 99.6 5.8E-15 1.3E-19 109.9 11.3 86 50-135 98-183 (335)
17 PLN03120 nucleic acid binding 99.6 5.6E-15 1.2E-19 109.5 10.9 76 53-132 4-79 (260)
18 KOG0111 Cyclophilin-type pepti 99.6 7.2E-16 1.6E-20 110.6 4.5 90 51-140 8-97 (298)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2E-14 4.3E-19 117.4 13.0 83 51-133 293-375 (509)
20 PLN03213 repressor of silencin 99.6 1.1E-14 2.3E-19 115.1 10.3 80 50-133 7-88 (759)
21 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-14 2.8E-19 119.9 11.4 78 55-132 2-79 (562)
22 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.7E-19 116.4 11.4 79 53-131 186-264 (457)
23 KOG0107 Alternative splicing f 99.6 1.3E-14 2.9E-19 100.6 8.9 80 51-135 8-87 (195)
24 smart00362 RRM_2 RNA recogniti 99.6 4.3E-14 9.3E-19 84.8 9.7 72 55-128 1-72 (72)
25 KOG0130 RNA-binding protein RB 99.6 6.8E-15 1.5E-19 98.2 6.4 81 51-131 70-150 (170)
26 KOG0145 RNA-binding protein EL 99.6 4.8E-14 1E-18 103.6 11.4 86 50-135 38-123 (360)
27 KOG0148 Apoptosis-promoting RN 99.6 1.4E-14 3E-19 106.7 8.2 82 53-134 62-143 (321)
28 KOG0126 Predicted RNA-binding 99.6 5.1E-16 1.1E-20 108.3 0.4 83 50-132 32-114 (219)
29 PLN03121 nucleic acid binding 99.6 6.7E-14 1.4E-18 102.5 11.4 77 52-132 4-80 (243)
30 TIGR01648 hnRNP-R-Q heterogene 99.6 4.9E-14 1.1E-18 115.7 11.5 81 50-131 55-136 (578)
31 TIGR01628 PABP-1234 polyadenyl 99.6 5E-14 1.1E-18 116.4 11.6 84 51-135 283-366 (562)
32 smart00360 RRM RNA recognition 99.5 6.4E-14 1.4E-18 83.7 9.0 71 58-128 1-71 (71)
33 TIGR01622 SF-CC1 splicing fact 99.5 6.1E-14 1.3E-18 113.2 11.5 82 51-133 87-168 (457)
34 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.7E-18 102.5 10.6 80 53-132 115-194 (306)
35 KOG0131 Splicing factor 3b, su 99.5 3.7E-14 7.9E-19 99.0 6.9 84 50-133 6-89 (203)
36 KOG0144 RNA-binding protein CU 99.5 8E-14 1.7E-18 108.4 9.2 91 46-136 27-120 (510)
37 KOG0148 Apoptosis-promoting RN 99.5 1.2E-13 2.7E-18 101.7 9.6 79 49-133 160-238 (321)
38 cd00590 RRM RRM (RNA recogniti 99.5 5.2E-13 1.1E-17 80.4 10.4 74 55-129 1-74 (74)
39 KOG4208 Nucleolar RNA-binding 99.5 9.9E-14 2.1E-18 98.6 7.9 108 46-153 42-151 (214)
40 KOG0108 mRNA cleavage and poly 99.5 8.4E-14 1.8E-18 110.6 8.1 85 54-138 19-103 (435)
41 KOG0114 Predicted RNA-binding 99.5 7.1E-13 1.5E-17 84.7 10.2 83 50-135 15-97 (124)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.3E-13 9.4E-18 109.1 11.6 78 51-133 273-351 (481)
43 KOG0144 RNA-binding protein CU 99.5 9.3E-14 2E-18 108.0 6.8 85 51-136 122-209 (510)
44 KOG0127 Nucleolar protein fibr 99.5 6.7E-13 1.5E-17 105.9 11.0 83 53-136 117-199 (678)
45 KOG0145 RNA-binding protein EL 99.5 7.3E-13 1.6E-17 97.4 10.4 82 51-132 276-357 (360)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 7.5E-13 1.6E-17 107.7 11.2 76 53-134 2-79 (481)
47 TIGR01648 hnRNP-R-Q heterogene 99.5 9.1E-13 2E-17 108.3 11.5 76 52-135 232-309 (578)
48 KOG0415 Predicted peptidyl pro 99.4 7.4E-13 1.6E-17 101.0 6.9 84 50-133 236-319 (479)
49 PF13893 RRM_5: RNA recognitio 99.4 4.7E-12 1E-16 73.5 8.5 56 70-130 1-56 (56)
50 KOG0105 Alternative splicing f 99.4 1.8E-12 4E-17 90.9 7.4 79 52-133 5-83 (241)
51 smart00361 RRM_1 RNA recogniti 99.4 4.5E-12 9.7E-17 77.0 8.3 61 67-127 2-69 (70)
52 KOG0147 Transcriptional coacti 99.4 1.2E-12 2.6E-17 104.4 6.3 76 56-131 281-356 (549)
53 KOG0124 Polypyrimidine tract-b 99.3 8E-13 1.7E-17 101.2 4.5 75 54-128 114-188 (544)
54 KOG0146 RNA-binding protein ET 99.3 1.5E-12 3.3E-17 96.1 5.7 88 49-136 281-368 (371)
55 KOG0131 Splicing factor 3b, su 99.3 2.1E-12 4.7E-17 90.2 6.0 105 33-137 74-181 (203)
56 KOG0127 Nucleolar protein fibr 99.3 3.3E-12 7.3E-17 102.0 7.7 85 53-137 5-89 (678)
57 KOG0146 RNA-binding protein ET 99.3 3.3E-12 7.1E-17 94.3 7.0 84 52-136 18-104 (371)
58 KOG0132 RNA polymerase II C-te 99.3 6.1E-12 1.3E-16 103.8 8.2 90 53-156 421-510 (894)
59 KOG0117 Heterogeneous nuclear 99.3 8.3E-12 1.8E-16 97.6 8.0 75 54-136 260-334 (506)
60 KOG0109 RNA-binding protein LA 99.3 7.8E-12 1.7E-16 93.2 6.9 73 54-134 3-75 (346)
61 KOG4212 RNA-binding protein hn 99.3 3E-11 6.6E-16 94.5 8.7 80 52-132 43-123 (608)
62 KOG0123 Polyadenylate-binding 99.2 1E-10 2.2E-15 92.1 9.4 98 32-136 59-156 (369)
63 KOG0153 Predicted RNA-binding 99.2 1.2E-10 2.7E-15 88.6 9.1 78 49-132 224-302 (377)
64 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.5E-10 3.2E-15 94.6 9.4 74 50-130 172-257 (509)
65 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.8E-10 1E-14 90.5 10.6 84 52-135 404-487 (940)
66 KOG0109 RNA-binding protein LA 99.1 7.7E-11 1.7E-15 87.9 5.6 78 50-135 75-152 (346)
67 KOG0124 Polypyrimidine tract-b 99.1 2.1E-10 4.6E-15 88.1 7.2 79 53-131 210-288 (544)
68 KOG4205 RNA-binding protein mu 99.1 2.1E-10 4.7E-15 87.8 7.1 85 53-138 97-181 (311)
69 KOG4206 Spliceosomal protein s 99.1 4.9E-10 1.1E-14 80.9 8.5 80 52-134 8-91 (221)
70 KOG4205 RNA-binding protein mu 99.1 1.2E-10 2.7E-15 89.1 5.2 86 52-138 5-90 (311)
71 KOG0110 RNA-binding protein (R 99.1 4.2E-10 9.1E-15 92.4 8.4 77 54-131 516-596 (725)
72 KOG0533 RRM motif-containing p 99.1 1.2E-09 2.5E-14 80.9 9.4 87 49-136 79-165 (243)
73 KOG0110 RNA-binding protein (R 99.1 2.1E-10 4.6E-15 94.1 5.6 83 53-135 613-695 (725)
74 KOG0123 Polyadenylate-binding 99.1 6.6E-10 1.4E-14 87.5 8.0 74 55-134 3-76 (369)
75 KOG1548 Transcription elongati 99.0 4E-09 8.7E-14 80.5 10.6 82 49-131 130-219 (382)
76 KOG0226 RNA-binding proteins [ 99.0 5.1E-10 1.1E-14 82.2 4.4 94 41-134 178-271 (290)
77 KOG1457 RNA binding protein (c 99.0 9.6E-09 2.1E-13 74.4 10.4 87 50-136 31-121 (284)
78 KOG4212 RNA-binding protein hn 98.9 3.8E-09 8.2E-14 83.0 7.0 75 51-130 534-608 (608)
79 KOG0151 Predicted splicing reg 98.9 2.3E-08 5E-13 82.5 10.1 109 24-132 143-256 (877)
80 KOG4660 Protein Mei2, essentia 98.8 3.9E-09 8.4E-14 84.8 4.2 72 50-126 72-143 (549)
81 KOG0116 RasGAP SH3 binding pro 98.8 2E-08 4.4E-13 79.8 8.0 83 52-135 287-369 (419)
82 PF04059 RRM_2: RNA recognitio 98.8 1.2E-07 2.6E-12 60.9 9.5 80 54-133 2-87 (97)
83 KOG4209 Splicing factor RNPS1, 98.8 1.5E-08 3.2E-13 75.0 5.8 84 49-133 97-180 (231)
84 KOG4454 RNA binding protein (R 98.6 1.2E-08 2.6E-13 73.6 1.8 81 51-133 7-87 (267)
85 KOG0106 Alternative splicing f 98.5 1.1E-07 2.5E-12 69.1 4.4 70 55-132 3-72 (216)
86 KOG1190 Polypyrimidine tract-b 98.5 1.1E-06 2.3E-11 68.8 9.1 78 53-135 297-375 (492)
87 KOG0120 Splicing factor U2AF, 98.5 1.7E-07 3.8E-12 75.7 4.6 90 50-139 286-375 (500)
88 KOG0147 Transcriptional coacti 98.4 1.9E-07 4.1E-12 75.1 2.6 84 50-134 176-259 (549)
89 KOG4211 Splicing factor hnRNP- 98.3 4.3E-06 9.2E-11 66.8 8.6 78 51-132 8-85 (510)
90 KOG3152 TBP-binding protein, a 98.3 6.4E-07 1.4E-11 66.1 3.1 73 52-124 73-157 (278)
91 PF11608 Limkain-b1: Limkain b 98.2 1.7E-05 3.6E-10 49.2 7.1 69 54-132 3-76 (90)
92 KOG4206 Spliceosomal protein s 98.1 1.7E-05 3.8E-10 57.6 8.2 78 49-131 142-220 (221)
93 KOG4211 Splicing factor hnRNP- 98.1 1.1E-05 2.4E-10 64.5 7.3 78 51-130 101-179 (510)
94 PF08777 RRM_3: RNA binding mo 98.1 9.5E-06 2.1E-10 53.0 5.5 59 54-118 2-60 (105)
95 COG5175 MOT2 Transcriptional r 98.1 1.9E-05 4.1E-10 60.7 7.6 80 53-132 114-202 (480)
96 KOG4210 Nuclear localization s 98.1 2.9E-06 6.3E-11 64.8 3.1 86 50-136 181-267 (285)
97 KOG1457 RNA binding protein (c 98.0 7.7E-06 1.7E-10 59.6 4.3 64 54-121 211-274 (284)
98 KOG1995 Conserved Zn-finger pr 98.0 8.5E-06 1.8E-10 62.8 4.4 86 50-135 63-156 (351)
99 KOG2314 Translation initiation 97.9 6.9E-05 1.5E-09 61.1 7.7 80 51-131 56-142 (698)
100 KOG0106 Alternative splicing f 97.9 1.2E-05 2.5E-10 58.7 3.1 73 50-130 96-168 (216)
101 KOG4307 RNA binding protein RB 97.7 0.00017 3.6E-09 60.3 8.2 80 49-129 863-943 (944)
102 KOG1456 Heterogeneous nuclear 97.7 0.0005 1.1E-08 53.7 9.8 80 50-134 284-364 (494)
103 KOG0105 Alternative splicing f 97.7 0.00053 1.2E-08 48.8 8.5 65 50-121 112-176 (241)
104 KOG1190 Polypyrimidine tract-b 97.5 0.00029 6.3E-09 55.5 6.5 78 51-132 412-490 (492)
105 KOG4849 mRNA cleavage factor I 97.5 9.2E-05 2E-09 57.3 3.5 77 52-128 79-157 (498)
106 KOG0129 Predicted RNA-binding 97.5 0.00039 8.5E-09 56.2 7.1 66 49-114 366-432 (520)
107 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.0004 8.7E-09 39.6 5.3 52 54-112 2-53 (53)
108 KOG0120 Splicing factor U2AF, 97.4 0.00049 1.1E-08 56.1 6.9 68 69-136 425-495 (500)
109 PF08675 RNA_bind: RNA binding 97.4 0.0012 2.5E-08 41.0 6.9 59 50-117 6-64 (87)
110 KOG1548 Transcription elongati 97.4 0.0011 2.4E-08 51.2 8.3 80 52-135 264-354 (382)
111 PF08952 DUF1866: Domain of un 97.4 0.0019 4E-08 44.4 8.1 56 69-133 52-107 (146)
112 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.0012 2.6E-08 42.7 6.8 77 52-130 5-89 (100)
113 KOG0129 Predicted RNA-binding 97.3 0.0017 3.8E-08 52.5 8.4 78 50-131 256-339 (520)
114 KOG1365 RNA-binding protein Fu 97.3 0.00064 1.4E-08 53.3 5.3 78 53-131 280-360 (508)
115 PF10309 DUF2414: Protein of u 97.2 0.0029 6.3E-08 37.2 6.6 56 52-115 4-62 (62)
116 KOG2202 U2 snRNP splicing fact 97.1 0.0003 6.5E-09 52.2 2.2 62 69-131 84-146 (260)
117 KOG1365 RNA-binding protein Fu 97.1 0.0015 3.2E-08 51.3 6.1 70 52-123 160-233 (508)
118 KOG1855 Predicted RNA-binding 97.0 0.00094 2E-08 53.0 4.3 69 49-117 227-308 (484)
119 KOG4676 Splicing factor, argin 96.9 0.0023 5.1E-08 50.3 5.7 77 53-130 7-86 (479)
120 KOG2416 Acinus (induces apopto 96.9 0.0012 2.5E-08 54.5 3.8 77 50-132 441-521 (718)
121 KOG2193 IGF-II mRNA-binding pr 96.7 0.0013 2.8E-08 52.3 2.8 78 55-139 3-82 (584)
122 KOG0128 RNA-binding protein SA 96.6 0.00027 5.8E-09 60.1 -1.7 68 54-121 668-735 (881)
123 KOG0128 RNA-binding protein SA 96.5 0.0011 2.4E-08 56.6 1.5 82 54-136 737-818 (881)
124 KOG0112 Large RNA-binding prot 96.4 0.0052 1.1E-07 52.9 4.6 80 49-134 451-532 (975)
125 PF15023 DUF4523: Protein of u 96.3 0.031 6.7E-07 38.3 7.3 75 50-132 83-161 (166)
126 KOG1996 mRNA splicing factor [ 96.3 0.023 5E-07 43.4 7.3 65 68-132 301-366 (378)
127 KOG4307 RNA binding protein RB 96.2 0.0041 8.9E-08 52.3 3.0 83 49-132 430-513 (944)
128 KOG0115 RNA-binding protein p5 96.2 0.0085 1.8E-07 44.7 4.1 63 54-117 32-94 (275)
129 KOG2068 MOT2 transcription fac 96.0 0.0025 5.4E-08 49.1 0.8 80 54-133 78-163 (327)
130 KOG1456 Heterogeneous nuclear 95.9 0.08 1.7E-06 41.8 8.4 80 51-135 118-201 (494)
131 PF07576 BRAP2: BRCA1-associat 95.8 0.26 5.6E-06 32.4 9.6 65 55-121 15-80 (110)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.017 3.7E-07 41.2 4.0 81 51-131 5-96 (176)
133 KOG0112 Large RNA-binding prot 95.6 0.0038 8.3E-08 53.7 0.4 82 50-132 369-450 (975)
134 KOG4660 Protein Mei2, essentia 95.6 0.021 4.5E-07 46.9 4.5 72 77-148 413-488 (549)
135 KOG2253 U1 snRNP complex, subu 95.3 0.031 6.8E-07 46.8 4.8 72 50-130 37-108 (668)
136 PF04847 Calcipressin: Calcipr 95.2 0.094 2E-06 37.7 6.4 63 66-134 8-72 (184)
137 PF03880 DbpA: DbpA RNA bindin 94.7 0.16 3.4E-06 30.8 5.7 67 55-130 2-74 (74)
138 KOG4285 Mitotic phosphoprotein 94.6 0.31 6.7E-06 37.5 8.0 64 53-124 197-260 (350)
139 PF11767 SET_assoc: Histone ly 93.3 0.88 1.9E-05 27.0 6.8 55 64-127 11-65 (66)
140 KOG4210 Nuclear localization s 92.1 0.12 2.7E-06 39.6 2.5 81 51-131 86-166 (285)
141 KOG2135 Proteins containing th 92.0 0.15 3.2E-06 41.4 2.9 73 55-134 374-447 (526)
142 KOG4574 RNA-binding protein (c 89.4 0.34 7.3E-06 42.1 2.9 73 55-133 300-374 (1007)
143 KOG0804 Cytoplasmic Zn-finger 89.4 2.4 5.1E-05 34.5 7.4 68 53-122 74-142 (493)
144 KOG2591 c-Mpl binding protein, 88.9 0.92 2E-05 37.8 4.9 70 53-129 175-248 (684)
145 KOG4483 Uncharacterized conser 83.2 4.3 9.4E-05 32.7 5.9 57 51-114 389-446 (528)
146 PF15513 DUF4651: Domain of un 77.5 7.4 0.00016 22.8 4.2 21 68-88 9-29 (62)
147 KOG2318 Uncharacterized conser 76.7 18 0.00038 30.7 7.6 81 50-130 171-305 (650)
148 KOG4410 5-formyltetrahydrofola 73.6 11 0.00025 29.0 5.4 46 54-105 331-377 (396)
149 KOG4676 Splicing factor, argin 71.5 0.54 1.2E-05 37.5 -2.1 75 54-133 152-226 (479)
150 PF10567 Nab6_mRNP_bdg: RNA-re 67.9 13 0.00027 28.8 4.6 82 50-131 12-106 (309)
151 KOG2295 C2H2 Zn-finger protein 63.5 1 2.2E-05 37.5 -2.1 74 51-124 229-302 (648)
152 KOG2193 IGF-II mRNA-binding pr 59.3 0.31 6.6E-06 39.3 -5.5 76 52-131 79-155 (584)
153 KOG2891 Surface glycoprotein [ 59.1 16 0.00035 28.1 3.8 38 50-87 146-195 (445)
154 KOG4454 RNA binding protein (R 58.8 2 4.3E-05 31.8 -1.1 69 50-119 77-149 (267)
155 COG0724 RNA-binding proteins ( 50.9 21 0.00046 25.7 3.3 63 50-112 222-284 (306)
156 smart00596 PRE_C2HC PRE_C2HC d 48.4 37 0.00079 20.3 3.4 60 68-130 2-62 (69)
157 KOG4019 Calcineurin-mediated s 48.0 20 0.00044 25.8 2.6 77 52-134 9-91 (193)
158 PF07530 PRE_C2HC: Associated 48.0 57 0.0012 19.3 4.4 62 68-132 2-64 (68)
159 KOG4213 RNA-binding protein La 46.9 15 0.00032 26.4 1.8 56 53-114 111-169 (205)
160 PF02714 DUF221: Domain of unk 46.9 33 0.00071 26.5 3.9 33 98-132 1-33 (325)
161 PF03468 XS: XS domain; Inter 45.8 86 0.0019 20.7 5.3 44 66-112 30-74 (116)
162 KOG1295 Nonsense-mediated deca 44.6 40 0.00086 27.1 4.0 70 52-121 6-78 (376)
163 KOG4365 Uncharacterized conser 37.5 4.7 0.0001 32.9 -2.0 76 55-131 5-80 (572)
164 PF07292 NID: Nmi/IFP 35 domai 37.0 58 0.0013 20.5 3.2 34 98-131 1-35 (88)
165 KOG4008 rRNA processing protei 33.4 48 0.001 24.9 2.7 35 50-84 37-71 (261)
166 PF03439 Spt5-NGN: Early trans 30.9 95 0.0021 19.0 3.5 36 79-119 33-68 (84)
167 KOG0156 Cytochrome P450 CYP2 s 28.8 1.6E+02 0.0034 24.6 5.4 59 57-125 36-97 (489)
168 COG2039 Pcp Pyrrolidone-carbox 27.4 29 0.00063 25.3 0.8 53 104-156 15-68 (207)
169 COG0030 KsgA Dimethyladenosine 25.5 1.1E+02 0.0024 23.3 3.7 35 54-88 96-130 (259)
170 PRK11558 putative ssRNA endonu 25.0 1.9E+02 0.004 18.6 4.0 47 55-104 29-75 (97)
171 PF09707 Cas_Cas2CT1978: CRISP 24.8 1.8E+02 0.004 18.1 4.2 46 55-103 27-72 (86)
172 PF15063 TC1: Thyroid cancer p 24.6 55 0.0012 20.0 1.5 27 54-80 26-52 (79)
173 PRK11634 ATP-dependent RNA hel 22.4 5.1E+02 0.011 22.4 7.8 69 54-131 487-561 (629)
174 PRK10905 cell division protein 22.3 2.7E+02 0.0059 22.0 5.2 57 61-118 252-309 (328)
175 PF11823 DUF3343: Protein of u 21.9 1.6E+02 0.0035 17.3 3.2 25 96-120 2-26 (73)
176 COG5193 LHP1 La protein, small 21.4 42 0.00091 27.2 0.7 60 54-113 175-244 (438)
177 PF00398 RrnaAD: Ribosomal RNA 20.6 1.2E+02 0.0026 22.8 3.0 24 52-75 96-119 (262)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=6e-20 Score=126.76 Aligned_cols=92 Identities=25% Similarity=0.439 Sum_probs=84.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+||++.+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..||+..|+|++|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccc
Q 031599 130 IPPEHVHPKLLY 141 (156)
Q Consensus 130 a~~~~~~~~~~~ 141 (156)
+.++...++.+.
T Consensus 111 a~~~~~~~~~~~ 122 (144)
T PLN03134 111 ANDRPSAPRAYG 122 (144)
T ss_pred CCcCCCCCCCCC
Confidence 987766555443
No 2
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.6e-18 Score=124.46 Aligned_cols=106 Identities=25% Similarity=0.453 Sum_probs=90.6
Q ss_pred CCCcccCCCCCC--CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHH
Q 031599 29 AADFLPLEGGPG--RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPE 106 (156)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~ 106 (156)
.+.|+|+.-++. +.........++..+|-|.||+.++++.+|+++|.+||.|..+.+.+++.||.++|||||.|.+.+
T Consensus 163 ~g~yvpP~mR~ga~~~~g~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRd 242 (270)
T KOG0122|consen 163 KGKYVPPSMRAGADRASGSDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRD 242 (270)
T ss_pred CccccCccccCCcccccccccccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHH
Confidence 446666543332 222222345668889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 031599 107 VAEVVADAMHGYLLFEHILQVHLIPPEH 134 (156)
Q Consensus 107 ~a~~al~~l~g~~i~g~~i~v~~a~~~~ 134 (156)
+|.+||..|||+-++.-.|.|+|+.|++
T Consensus 243 dA~rAI~~LnG~gyd~LILrvEwskP~~ 270 (270)
T KOG0122|consen 243 DAARAIADLNGYGYDNLILRVEWSKPSN 270 (270)
T ss_pred HHHHHHHHccCcccceEEEEEEecCCCC
Confidence 9999999999999999999999999863
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=1.8e-17 Score=129.44 Aligned_cols=84 Identities=23% Similarity=0.429 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
....|||+|||+.+++++|.++|.+||.|.++.++.++.|+.++|||||+|.+.++|..|+..|||..++|+.|+|.+..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
++..
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 7643
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=4.6e-17 Score=98.41 Aligned_cols=70 Identities=36% Similarity=0.719 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 56 l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
|||+|||+++++++|+++|..||.+..+.+..+ .++..+++|||+|.+.++|+.|+..|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999888 6899999999999999999999999999999999885
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=3.5e-17 Score=127.79 Aligned_cols=82 Identities=28% Similarity=0.564 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
..+|||+|||..+++++|+++|..||+|.+|.++.++.+++++|||||+|.+.++|..|+..|||..+.|++|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 031599 133 EH 134 (156)
Q Consensus 133 ~~ 134 (156)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 54
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=8.9e-17 Score=125.23 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++|||+|||+++++++|+++|..||.|.+|.|+.+..+++++|||||+|.+.++|+.|+..||+..+.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34556799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98764
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=5.8e-17 Score=121.82 Aligned_cols=88 Identities=23% Similarity=0.444 Sum_probs=80.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 031599 44 TEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (156)
Q Consensus 44 ~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~ 123 (156)
+...+..+.+.+|+|+|||+...+-||+.+|++||.|.+|.|+.+ ...+||||||+|.+.++|++|-..|||+.|.||
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 344456778899999999999999999999999999999999988 456799999999999999999999999999999
Q ss_pred EEEEEecCCC
Q 031599 124 ILQVHLIPPE 133 (156)
Q Consensus 124 ~i~v~~a~~~ 133 (156)
+|+|..+.++
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999999765
No 8
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=8.8e-17 Score=116.06 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
.-.+|||++|+|.+..++|+++|++||+|.+..++.|+.+++++|||||+|.+.++|.+|++. ....|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 446899999999999999999999999999999999999999999999999999999999964 6678999999999875
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=7.3e-16 Score=119.93 Aligned_cols=105 Identities=20% Similarity=0.374 Sum_probs=90.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-Ce
Q 031599 45 EEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EH 123 (156)
Q Consensus 45 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~ 123 (156)
++.+.....+-|||+.||.++.+++|..+|++.|.|-+++++.++.+|.+||||||+|.+.+.|+.|++.||+++|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 33444567789999999999999999999999999999999999999999999999999999999999999999985 99
Q ss_pred EEEEEecCCCCCCCccccccccccchhhh
Q 031599 124 ILQVHLIPPEHVHPKLLYFVEMSIQELVA 152 (156)
Q Consensus 124 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~ 152 (156)
.|.|+.+.. +.+++.|.-...++.+.
T Consensus 155 ~igvc~Sva---n~RLFiG~IPK~k~kee 180 (506)
T KOG0117|consen 155 LLGVCVSVA---NCRLFIGNIPKTKKKEE 180 (506)
T ss_pred EeEEEEeee---cceeEeccCCccccHHH
Confidence 999999987 45566655554444433
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=7.3e-16 Score=126.68 Aligned_cols=81 Identities=27% Similarity=0.506 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+||++.+++++|+++|..||.|.+|.++.++.+++++|||||+|.+.++|+.|+..|||..++|++|.|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q 031599 131 P 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=2.3e-15 Score=91.34 Aligned_cols=70 Identities=33% Similarity=0.669 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 56 l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
|||+|||+.+++++|..+|..||.|..+.+..++. +..+++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999965 89999999999999999999999999999999874
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=2.7e-15 Score=116.97 Aligned_cols=83 Identities=27% Similarity=0.463 Sum_probs=76.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEe
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVHL 129 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~~ 129 (156)
...+|||+|||+.+++++|+++|.+||.|..+.++.+..+++.+|||||+|.+.++|++|++.||+..+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998899999999999999999999999999998865 6899999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 87643
No 13
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=9.4e-16 Score=101.33 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...+++|||+||++.+++++|.++|..+|+|..+.+-.++.+..+.|||||+|...++|..|++-++|+.++.++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
......
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 875543
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=2.6e-15 Score=123.47 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+||++.+++++|+++|..||.|.++.++.++.+++++|||||+|.+.++|..|+..||+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 44689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 543
No 15
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=7.8e-16 Score=109.37 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.+....|-|-||.+-++.++|+.+|++||.|-+|.|+.|+.|...+|||||.|.+..+|+.|++.|+|.+|+|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
+.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.8e-15 Score=109.88 Aligned_cols=86 Identities=24% Similarity=0.414 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.++-.+|||+.|+..+++..|+..|+.||+|..|.|+.+..||+++|||||+|....++..|.+.-+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
-..+..
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 876544
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=5.6e-15 Score=109.51 Aligned_cols=76 Identities=16% Similarity=0.371 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.++|||+||++.+++++|+++|+.||.|.++.|+.++. .+|||||+|.+.++++.|+ .|||..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999988853 4689999999999999999 5999999999999999874
No 18
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.2e-16 Score=110.59 Aligned_cols=90 Identities=31% Similarity=0.549 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||++|...+++.-|...|.+||.|..+.++.|..++++|||+||+|...++|-+|+..||+.+|-|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccc
Q 031599 131 PPEHVHPKLL 140 (156)
Q Consensus 131 ~~~~~~~~~~ 140 (156)
.|...+..+.
T Consensus 88 kP~kikegsq 97 (298)
T KOG0111|consen 88 KPEKIKEGSQ 97 (298)
T ss_pred CCccccCCCC
Confidence 9987765543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=2e-14 Score=117.36 Aligned_cols=83 Identities=27% Similarity=0.486 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=1.1e-14 Score=115.06 Aligned_cols=80 Identities=15% Similarity=0.316 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHHhCCCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDP--EVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~--~~a~~al~~l~g~~i~g~~i~v 127 (156)
....-+||||||++.+++++|+..|..||.|..+.|++ .+| ||||||+|... .++.+||..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34556899999999999999999999999999999994 466 99999999987 6899999999999999999999
Q ss_pred EecCCC
Q 031599 128 HLIPPE 133 (156)
Q Consensus 128 ~~a~~~ 133 (156)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999763
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=1.3e-14 Score=119.94 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=75.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.|||+|||+++++++|.++|..||.|.+|+++++..+++++|||||+|.+.++|++|+..||+..+.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 699999999999999999999999999999999988999999999999999999999999999999999999999853
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.58 E-value=1.7e-14 Score=116.38 Aligned_cols=79 Identities=33% Similarity=0.621 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..+|||+|||..+++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5799999999999999999999999999999999998889999999999999999999999999999999999999976
No 23
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-14 Score=100.61 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+||+..++..+|+..|..||++..+.|-..+ .|||||+|.+..+|+.|+..|+|..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 456789999999999999999999999999999987776 799999999999999999999999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76544
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=4.3e-14 Score=84.77 Aligned_cols=72 Identities=35% Similarity=0.678 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++++|||+|.+.++|+.|+..+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988775 7788999999999999999999999999999988763
No 25
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=6.8e-15 Score=98.16 Aligned_cols=81 Identities=19% Similarity=0.404 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.....|||.++.+..++++|.+.|..||+|..+++..++.||..+||++|+|.+...|++|+..+||..|.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 031599 131 P 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 5
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=4.8e-14 Score=103.57 Aligned_cols=86 Identities=26% Similarity=0.503 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
++....|.|.=||..+|+++++.+|...|+|++|.+++|+.+|.+.||+||.|.++.+|++|+..|||..+..+.|.|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
++|...
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 998543
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.4e-14 Score=106.69 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=78.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
-.-+||+.|...++-++|++.|.+||+|.++++++|..|++++||+||.|.+.++|++||..|||..|++|.|+..|+.-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CC
Q 031599 133 EH 134 (156)
Q Consensus 133 ~~ 134 (156)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 43
No 28
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=5.1e-16 Score=108.29 Aligned_cols=83 Identities=28% Similarity=0.574 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
-.++..|||||||+..|+.||-..|++||+|..+.+++|..||+++||||+.|.+..+...|+..|||..|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 653
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=6.7e-14 Score=102.45 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+||++.+++.+|+++|..||.|..|.|+++. ...+||||+|.+.++++.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999884 34579999999999999999 899999999999998865
Q ss_pred C
Q 031599 132 P 132 (156)
Q Consensus 132 ~ 132 (156)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=4.9e-14 Score=115.70 Aligned_cols=81 Identities=25% Similarity=0.527 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v~ 128 (156)
....++|||+|||+++++++|.++|..||.|.+++|+.+ .+++++|||||+|.+.++|+.|+..||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 79999999999999999999999999999885 7777777
Q ss_pred ecC
Q 031599 129 LIP 131 (156)
Q Consensus 129 ~a~ 131 (156)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 664
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=5e-14 Score=116.44 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+||+..+++++|+++|..||.|.++.++.+ .++.++|||||+|.+.++|.+|+..|||..++|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44568999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
..+..
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86543
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=6.4e-14 Score=83.68 Aligned_cols=71 Identities=39% Similarity=0.685 Sum_probs=66.4
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 58 IGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 58 V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
|+|||..+++++|+++|..||.+..+.+..++.++.++++|||+|.+.++|..|+..+++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887788999999999999999999999999999999988773
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=6.1e-14 Score=113.17 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||..+++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|.+|+ .|+|..+.|++|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 44679999999999999999999999999999999999999999999999999999999999 58999999999999887
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.3e-13 Score=102.48 Aligned_cols=80 Identities=33% Similarity=0.679 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
..+|||+|||..+++++|.++|..||.+..+.+..++.++..+|||||+|.+.+++..|+..+++..+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999653
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.52 E-value=3.7e-14 Score=99.02 Aligned_cols=84 Identities=23% Similarity=0.417 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.+...+|||+||+..++++.|.++|.+.|+|..+++++++.++.++||||++|.++++|+=|++.||...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 031599 130 IPPE 133 (156)
Q Consensus 130 a~~~ 133 (156)
+...
T Consensus 86 as~~ 89 (203)
T KOG0131|consen 86 ASAH 89 (203)
T ss_pred cccc
Confidence 8733
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8e-14 Score=108.36 Aligned_cols=91 Identities=25% Similarity=0.457 Sum_probs=80.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee---CC
Q 031599 46 EKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---FE 122 (156)
Q Consensus 46 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i---~g 122 (156)
.+..+.+.-++||+.+|..++|.||+.+|++||.|.+|.+++|+.|+.++|||||.|.+.++|.+|+..||+... ..
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 333456667899999999999999999999999999999999999999999999999999999999999998653 36
Q ss_pred eEEEEEecCCCCCC
Q 031599 123 HILQVHLIPPEHVH 136 (156)
Q Consensus 123 ~~i~v~~a~~~~~~ 136 (156)
++|.|++++....+
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 78999999876554
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.2e-13 Score=101.73 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..++.++|||+|++..+++++|++.|..||.|.+|++..+ +||+||.|.++++|..||..+|+..|.|+.++|.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4677889999999999999999999999999999999888 7999999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
|.+..
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 98754
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=5.2e-13 Score=80.41 Aligned_cols=74 Identities=38% Similarity=0.689 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
+|+|+|||..+++++|.++|..+|.+..+.+..++.+ ..+++|||+|.+.++|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999888543 7789999999999999999999999999999998864
No 39
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.50 E-value=9.9e-14 Score=98.58 Aligned_cols=108 Identities=42% Similarity=0.813 Sum_probs=96.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 46 EKPLVNKATVLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 46 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
..+.......+||..+|..+.+..+..+|.++ |.+...++-+++.||.++|||||+|.+.+.|.-|.++||++.+.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 33445566789999999999999999999998 77888889899999999999999999999999999999999999999
Q ss_pred EEEEecCCC-CCCCccccccccccchhhhe
Q 031599 125 LQVHLIPPE-HVHPKLLYFVEMSIQELVAI 153 (156)
Q Consensus 125 i~v~~a~~~-~~~~~~~~~~~~~~~~~~~~ 153 (156)
|.|.+-.|. ......|++.+..+.+...+
T Consensus 122 L~c~vmppe~~v~~~~~k~~~~~~~~~~~~ 151 (214)
T KOG4208|consen 122 LECHVMPPEQKVEKNLKKVSGTPFKPGKTV 151 (214)
T ss_pred eeeEEeCchhhhhhhhhhhcCCcCCCCCcc
Confidence 999999998 77788888888888776554
No 40
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=8.4e-14 Score=110.63 Aligned_cols=85 Identities=27% Similarity=0.486 Sum_probs=80.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
+.+||||+|+++++++|..+|...|.|..++++.|+.||+.+||||++|.+.+++..|++.|||..++|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCc
Q 031599 134 HVHPK 138 (156)
Q Consensus 134 ~~~~~ 138 (156)
..+.+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 65444
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=7.1e-13 Score=84.72 Aligned_cols=83 Identities=27% Similarity=0.488 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....+.|||.|||+.+|.++.-++|+.||.|..+++-- +...+|-|||.|++..+|..|++.|+|..+.++-+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 45677899999999999999999999999999998843 445689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
..+...
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 887544
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=4.3e-13 Score=109.08 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 51 NKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 51 ~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....+|||+||++ .+++++|..+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4567999999998 69999999999999999999998874 68999999999999999999999999999999999
Q ss_pred cCCC
Q 031599 130 IPPE 133 (156)
Q Consensus 130 a~~~ 133 (156)
+...
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.3e-14 Score=108.00 Aligned_cols=85 Identities=25% Similarity=0.422 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eC--CeEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL-LF--EHILQV 127 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~-i~--g~~i~v 127 (156)
...++|||+.|+..+++.+++.+|..||.|++|.|.++. .+.+|||+||.|.+.+.|..|++.|||.. +. ..+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 347889999999999999999999999999999999994 89999999999999999999999999976 44 458999
Q ss_pred EecCCCCCC
Q 031599 128 HLIPPEHVH 136 (156)
Q Consensus 128 ~~a~~~~~~ 136 (156)
+|+++++-+
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999987554
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.7e-13 Score=105.89 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
-.+|.|.|||+.+...+|+.+|+.||.+.++.|++.+ .|+..|||||+|....+|..|++.+|+..|+|++|.|.||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999875 555559999999999999999999999999999999999988
Q ss_pred CCCC
Q 031599 133 EHVH 136 (156)
Q Consensus 133 ~~~~ 136 (156)
++.=
T Consensus 196 Kd~y 199 (678)
T KOG0127|consen 196 KDTY 199 (678)
T ss_pred cccc
Confidence 7653
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=7.3e-13 Score=97.40 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.....|||-||.+++.+.-|.++|++||.|..+.+++|..|.+++||+||.+.+.++|..|+..|||..++++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999986
Q ss_pred CC
Q 031599 131 PP 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 54
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=7.5e-13 Score=107.70 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh--CCCeeCCeEEEEEec
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM--HGYLLFEHILQVHLI 130 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l--~g~~i~g~~i~v~~a 130 (156)
+.+|||+|||+.+++++|+++|.+||.|..+.++.+ ++||||+|.+.++|+.|+..+ ++..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 568999999999999999999999999999998864 589999999999999999864 678999999999999
Q ss_pred CCCC
Q 031599 131 PPEH 134 (156)
Q Consensus 131 ~~~~ 134 (156)
..+.
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7543
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=9.1e-13 Score=108.28 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQF--GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...+|||+||+..+++++|+++|..| |.|..|.++ ++||||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999 999999765 45999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987644
No 48
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.4e-13 Score=100.98 Aligned_cols=84 Identities=25% Similarity=0.441 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.++...|||-.|.+.++.++|.-+|+.||.|..|.++++..||.+..||||+|.+.++++.|.-.|++..|++++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 031599 130 IPPE 133 (156)
Q Consensus 130 a~~~ 133 (156)
+++-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 9854
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=4.7e-12 Score=73.54 Aligned_cols=56 Identities=29% Similarity=0.559 Sum_probs=50.7
Q ss_pred HHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 70 MQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 70 l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
|.++|++||.|..+.+.... +++|||+|.+.++|+.|+..|||..++|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999987663 689999999999999999999999999999999986
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.8e-12 Score=90.94 Aligned_cols=79 Identities=27% Similarity=0.492 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..++|||+|||.++.+.+|+++|-+||.|.+|.+... .....||||+|.+..+|+.||..-+|..++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4678999999999999999999999999999987433 2336799999999999999999999999999999999987
Q ss_pred CC
Q 031599 132 PE 133 (156)
Q Consensus 132 ~~ 133 (156)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=4.5e-12 Score=77.05 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=54.1
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 67 EKEMQAFFS----QFGAIKRLR-IARNKKT--GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 67 ~~~l~~~f~----~~G~i~~~~-i~~~~~~--~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
+++|+++|. .||.+..+. ++.++.+ +..+||+||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999985 6555555 889999999999999999999999999999999876
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.36 E-value=1.2e-12 Score=104.38 Aligned_cols=76 Identities=29% Similarity=0.649 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 56 LYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 56 l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
+||+||.+++++++|+..|++||.|..+.++.+..||.++|||||+|.+.++|.+|+..|||..|-|+.|.|..-.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999998764
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8e-13 Score=101.24 Aligned_cols=75 Identities=29% Similarity=0.580 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
+++|||.+.+.+.++.|+..|.+||+|.++.+.-|+.|++++||+||+|.-++.|+.|++.|||..++|+.|.|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998887
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=96.09 Aligned_cols=88 Identities=30% Similarity=0.522 Sum_probs=83.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..++.+.|||-.||...++.+|.++|-.||.|.+.++..|+-|..+++|+||.|.+..+++.||..|||..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45778999999999999999999999999999999998898999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
+.+|+..+
T Consensus 361 LKRPkdan 368 (371)
T KOG0146|consen 361 LKRPKDAN 368 (371)
T ss_pred hcCccccC
Confidence 99988654
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.34 E-value=2.1e-12 Score=90.24 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=89.5
Q ss_pred ccCCCCCCCCCCC--CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHH
Q 031599 33 LPLEGGPGRKLTE--EKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAE 109 (156)
Q Consensus 33 ~~~~~~~~~~~~~--~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~kg~~fv~f~~~~~a~ 109 (156)
+.+.|++.+.... .....+....+||+||.+.+.+..|.+.|+.||.+.. -.+++++.||..+||+||.|.+.+.+.
T Consensus 74 VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 74 VKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred HHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 5567877764332 2334556689999999999999999999999999876 488888899999999999999999999
Q ss_pred HHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 031599 110 VVADAMHGYLLFEHILQVHLIPPEHVHP 137 (156)
Q Consensus 110 ~al~~l~g~~i~g~~i~v~~a~~~~~~~ 137 (156)
+|+..+||..+..++|.|.++..+..+.
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCCc
Confidence 9999999999999999999997665543
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.3e-12 Score=101.99 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=80.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
+.+|||++||++++.++|..+|+.+|+|..|.++.+..++.++||+||+|+-.+++++|+..+.+..+.|+.|+|.++.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 36899999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q 031599 133 EHVHP 137 (156)
Q Consensus 133 ~~~~~ 137 (156)
+....
T Consensus 85 R~r~e 89 (678)
T KOG0127|consen 85 RARSE 89 (678)
T ss_pred cccch
Confidence 65543
No 57
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.3e-12 Score=94.33 Aligned_cols=84 Identities=23% Similarity=0.436 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQVH 128 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~---g~~i~v~ 128 (156)
+.++|||+.|...-+|+|++.+|..||.|.+|.+.+.+ .|.++||+||.|.+.-+|+.||..|||.... ...|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 66789999999999999999999999999999999985 8999999999999999999999999997643 5579999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
+++..+.+
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 99875543
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=6.1e-12 Score=103.82 Aligned_cols=90 Identities=17% Similarity=0.361 Sum_probs=78.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
+++|||++|+..+++.||..+|+.||+|.+|.++.. ++||||.+....+|.+|+..|+...+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 479999999999999999999999999999998877 78999999999999999999999999999999999976
Q ss_pred CCCCCccccccccccchhhheecC
Q 031599 133 EHVHPKLLYFVEMSIQELVAICLG 156 (156)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~ 156 (156)
+.-+. +|+.+|.+.||
T Consensus 495 ~G~ks--------e~k~~wD~~lG 510 (894)
T KOG0132|consen 495 KGPKS--------EYKDYWDVELG 510 (894)
T ss_pred CCcch--------hhhhhhhcccC
Confidence 55443 44455555554
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=8.3e-12 Score=97.59 Aligned_cols=75 Identities=24% Similarity=0.464 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
..|||.||+.++|++.|+.+|..||.|..|..++| ||||-|.+.++|.+|++.+||..|+|..|.|.+|+|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 58999999999999999999999999999988755 9999999999999999999999999999999999986
Q ss_pred CCC
Q 031599 134 HVH 136 (156)
Q Consensus 134 ~~~ 136 (156)
...
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 543
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=7.8e-12 Score=93.16 Aligned_cols=73 Identities=29% Similarity=0.581 Sum_probs=69.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
..+||+|||..+++.+|+.+|++||.|.+|+|+.+ ||||-..+...++.|++.|||..|+|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999977 9999999999999999999999999999999999877
Q ss_pred C
Q 031599 134 H 134 (156)
Q Consensus 134 ~ 134 (156)
+
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=3e-11 Score=94.48 Aligned_cols=80 Identities=16% Similarity=0.367 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
..+.+||.|||+++.|.+|+++|. +.|+|.+|.+..| .+++.+|||.|+|++++.+++|++.||.+.++|+.|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999996 5899999999999 59999999999999999999999999999999999999887
Q ss_pred CC
Q 031599 131 PP 132 (156)
Q Consensus 131 ~~ 132 (156)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 64
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1e-10 Score=92.07 Aligned_cols=98 Identities=26% Similarity=0.465 Sum_probs=81.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 031599 32 FLPLEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVV 111 (156)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~a 111 (156)
+.+..|.+.+....... +..+||.||+++++..+|.++|+.||.|.+|.+..+. +| ++|| ||.|.+++.|++|
T Consensus 59 ~~~~~~~~~rim~s~rd----~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRD----PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred CcccCCcEEEeehhccC----CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHH
Confidence 34445555554433332 2229999999999999999999999999999999995 55 8999 9999999999999
Q ss_pred HHHhCCCeeCCeEEEEEecCCCCCC
Q 031599 112 ADAMHGYLLFEHILQVHLIPPEHVH 136 (156)
Q Consensus 112 l~~l~g~~i~g~~i~v~~a~~~~~~ 136 (156)
+..+||..+.|++|.|.....+..+
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhh
Confidence 9999999999999999988765553
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=88.56 Aligned_cols=78 Identities=26% Similarity=0.459 Sum_probs=68.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-HhCCCeeCCeEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD-AMHGYLLFEHILQV 127 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~-~l~g~~i~g~~i~v 127 (156)
.+....+|||++|...+++.+|++.|.+||+|.++.+... +++|||+|.+..+|+.|.. .++...|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3444579999999999999999999999999999988776 5699999999999988876 55556689999999
Q ss_pred EecCC
Q 031599 128 HLIPP 132 (156)
Q Consensus 128 ~~a~~ 132 (156)
.|+.+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99998
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=1.5e-10 Score=94.64 Aligned_cols=74 Identities=27% Similarity=0.513 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhc------------CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQF------------GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG 117 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~------------G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g 117 (156)
....++|||+|||+.+++++|.++|..+ +.|..+.+ ...+|||||+|.+.++|..|| .|+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3445799999999999999999999875 23334433 334799999999999999999 6999
Q ss_pred CeeCCeEEEEEec
Q 031599 118 YLLFEHILQVHLI 130 (156)
Q Consensus 118 ~~i~g~~i~v~~a 130 (156)
..+.|..|.|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999988643
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.14 E-value=4.8e-10 Score=90.47 Aligned_cols=84 Identities=14% Similarity=0.331 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
-.+.|||++|+..+...+|+.+|.+||.|.-..++.+..+...++|+||++.+..+|.+||..||.+.|.|+.|.|.-+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34689999999999999999999999999999999998889999999999999999999999999999999999999887
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
....
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 4433
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=7.7e-11 Score=87.94 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+++|+||.+.++..+|+..|.+||++.+|+|+++ |+||-|.-.++|..|++.||+.++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345678999999999999999999999999999999866 999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++-.
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 987543
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.1e-10 Score=88.15 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
-.+|||..+.++.+++||+..|+.||+|..|.+-+.+..+.++||+|++|.+..+...|+..||-..++|.-|+|--+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999987664
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=2.1e-10 Score=87.83 Aligned_cols=85 Identities=21% Similarity=0.436 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
...|||++||.++++.+++++|.+||.|..+.++.|..+++.++|+||.|.+++++..++ ...-+.++++.+.|.-|.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 459999999999999999999999999999999999999999999999999999999998 4478899999999999999
Q ss_pred CCCCCc
Q 031599 133 EHVHPK 138 (156)
Q Consensus 133 ~~~~~~ 138 (156)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 876543
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.11 E-value=4.9e-10 Score=80.91 Aligned_cols=80 Identities=23% Similarity=0.456 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQA----FFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~----~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
+.++|||.||+..+..++|+. +|++||.|..|... .+.+.+|-|||.|.+.+.|-.|++.|+|..+.|+.+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998888 99999999988664 46788999999999999999999999999999999999
Q ss_pred EecCCCC
Q 031599 128 HLIPPEH 134 (156)
Q Consensus 128 ~~a~~~~ 134 (156)
.+|....
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998654
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=89.14 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..+++||++|++.++++.|+.+|.+||++.+|.+++++.++..+||+||+|.+.+.+.+++.. .-+.|+|+.|.+.-+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 677899999999999999999999999999999999999999999999999999999888843 5677899999999988
Q ss_pred CCCCCCc
Q 031599 132 PEHVHPK 138 (156)
Q Consensus 132 ~~~~~~~ 138 (156)
++.....
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 8765443
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.2e-10 Score=92.36 Aligned_cols=77 Identities=27% Similarity=0.513 Sum_probs=69.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC----cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ----SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~----~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.+|||.||+++++.+++...|..+|.|.++.|...+ .+. +.|||||+|.+.++|++|++.|+|+.|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 349999999999999999999999999999886664 222 459999999999999999999999999999999999
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 98
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.07 E-value=1.2e-09 Score=80.95 Aligned_cols=87 Identities=20% Similarity=0.399 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.+..++.|+|.||+..+.+.||+++|..||.+..+.+..++ .|.+.|.|-|.|...++|.+|++.|||..++|+.|.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34556789999999999999999999999998888888884 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
+..+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 98765544
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.1e-10 Score=94.08 Aligned_cols=83 Identities=24% Similarity=0.500 Sum_probs=77.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.+.|+|.|||+..+-.+++++|..||.+..|+++.-...+.++|||||+|-++.+|.+|+..|.++.+.|++|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57899999999999999999999999999999988756677899999999999999999999999999999999999987
Q ss_pred CCC
Q 031599 133 EHV 135 (156)
Q Consensus 133 ~~~ 135 (156)
.+.
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 554
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6.6e-10 Score=87.47 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEH 134 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~~ 134 (156)
.+||| +++|+..|.+.|.++|++.++++.++. | +.|||||.|.++.+|++||..+|...+.|++|++.|+.-..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58998 999999999999999999999999996 5 99999999999999999999999999999999999997543
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.02 E-value=4e-09 Score=80.46 Aligned_cols=82 Identities=20% Similarity=0.251 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
.......|||+|||.++|.+++.++|..+|.|.. |.+.++. .|..+|-|++.|...+++..|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455667999999999999999999999998754 7777774 699999999999999999999999999999
Q ss_pred CCeEEEEEecC
Q 031599 121 FEHILQVHLIP 131 (156)
Q Consensus 121 ~g~~i~v~~a~ 131 (156)
.|+.|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999986
No 76
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.99 E-value=5.1e-10 Score=82.15 Aligned_cols=94 Identities=17% Similarity=0.309 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 41 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 41 ~~~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
...+..-+.+....+||+|.|.-.++.+.|...|.+|..-....++++..|++++||+||.|.+..++.+|+..++|..+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 33444444567788999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCC
Q 031599 121 FEHILQVHLIPPEH 134 (156)
Q Consensus 121 ~g~~i~v~~a~~~~ 134 (156)
+.++|...-+.-+.
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99998877665433
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.97 E-value=9.6e-09 Score=74.36 Aligned_cols=87 Identities=16% Similarity=0.284 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN-KKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~---g~~i 125 (156)
....++|||++||.++...+|..+|..|...+.+.+-.. +..+-++-+||++|.+...|++|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 455789999999999999999999999988877766433 333346689999999999999999999999987 8899
Q ss_pred EEEecCCCCCC
Q 031599 126 QVHLIPPEHVH 136 (156)
Q Consensus 126 ~v~~a~~~~~~ 136 (156)
+++++++....
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99999876543
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=3.8e-09 Score=82.96 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||.|||.++||..|++-|..||.+.+..|+. .++.+| .|.|.++++|++|+..|+|..++|+.|.|.+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3457899999999999999999999999999998843 466665 99999999999999999999999999999873
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.86 E-value=2.3e-08 Score=82.47 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=83.5
Q ss_pred CCCCCCCCcccCCCCCCC--CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC---CCCCcccEE
Q 031599 24 SDKKGAADFLPLEGGPGR--KLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK---KTGQSKHFG 98 (156)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~kg~~ 98 (156)
+++..++.+.++...... ..+..+..++.++.+||+||++.+++..|-..|+.||+|..+.++-.+ .....+.|+
T Consensus 143 ~d~~~s~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cg 222 (877)
T KOG0151|consen 143 SDSAVSSRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCG 222 (877)
T ss_pred cCcchhhccCCCccccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccc
Confidence 344345555555432222 223333446778899999999999999999999999999998776543 233457799
Q ss_pred EEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 99 FIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 99 fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
||.|-+..++++|+..|+|..+.++.+.+-|+.+
T Consensus 223 fvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 223 FVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred eeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 9999999999999999999999999999999853
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3.9e-09 Score=84.79 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
....++|+|.|||..+++++|..+|+.||+|.+++.. ...+|.+||+|.|..+|++|++.|++..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999999997654 44489999999999999999999999999999888
No 81
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=2e-08 Score=79.78 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
....|||.|||++++..+|+++|..||.|....|......++..+||||+|.+..+++.++.. +-..++++++.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 334699999999999999999999999999987755433455459999999999999999976 6777999999999987
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
+...
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6433
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.78 E-value=1.2e-07 Score=60.85 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=69.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC----CeEEEE
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF----EHILQV 127 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~----g~~i~v 127 (156)
++|.|.|||-..+.++|.+++.. .|..-.+.++.|..++.+.|||||.|.+.+.+..-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 47999999999999999999875 477788999999889999999999999999999999999998764 556788
Q ss_pred EecCCC
Q 031599 128 HLIPPE 133 (156)
Q Consensus 128 ~~a~~~ 133 (156)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 877643
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=1.5e-08 Score=75.01 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
...+...+||+|+.+.++.++++..|..||.+..+.++.+..++..+||+||+|.+.+.++.++. |++..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 45667789999999999999999999999999999999998888899999999999999999997 99999999999998
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
+.+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87644
No 84
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=1.2e-08 Score=73.60 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|+...++++.|.++|.+.|+|..+.|+.++ .+..+ ||||.|.++.++.-|++.+||..+.+..+.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345689999999999999999999999999999998884 66666 9999999999999999999999999998888776
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
...
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 543
No 85
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1.1e-07 Score=69.14 Aligned_cols=70 Identities=31% Similarity=0.568 Sum_probs=64.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.+||++|++.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..||+..|.|-++.|+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 58999999999999999999999999998774 35889999999999999999999999999999999874
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.49 E-value=1.1e-06 Score=68.79 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 53 ATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 53 ~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...|.|.||... +|.+.|--+|+.||+|..+.|..++ +..|+|.|.+...|+.|+..|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 577888888775 9999999999999999999998885 5789999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
..+.
T Consensus 372 H~~v 375 (492)
T KOG1190|consen 372 HTNV 375 (492)
T ss_pred Cccc
Confidence 6654
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=1.7e-07 Score=75.65 Aligned_cols=90 Identities=23% Similarity=0.479 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....+.+||++||...++..+.+++..||++....++.+..+|.++||||.+|.+......|+..|||..+++..+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 45567899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCCCCcc
Q 031599 130 IPPEHVHPKL 139 (156)
Q Consensus 130 a~~~~~~~~~ 139 (156)
+-........
T Consensus 366 A~~g~~~~~~ 375 (500)
T KOG0120|consen 366 AIVGASNANV 375 (500)
T ss_pred hhccchhccc
Confidence 8765554333
No 88
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.38 E-value=1.9e-07 Score=75.14 Aligned_cols=84 Identities=20% Similarity=0.389 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
+-+.+++|+-.++-..+..+|.+||..+|.|..|.++.++.++.++|.+||+|.+.+.+..|+ .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 444578999999999999999999999999999999999999999999999999999999999 8999999999999988
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
.....
T Consensus 255 sEaek 259 (549)
T KOG0147|consen 255 SEAEK 259 (549)
T ss_pred cHHHH
Confidence 76443
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.31 E-value=4.3e-06 Score=66.80 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.....|-+.+|||++|+++|.+||+.++ |..+.+++ .+|+..|-|||+|.+.++++.|++. |...+..+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 4456788889999999999999999874 56654444 4899999999999999999999954 877788888888766
Q ss_pred CC
Q 031599 131 PP 132 (156)
Q Consensus 131 ~~ 132 (156)
.+
T Consensus 84 ~~ 85 (510)
T KOG4211|consen 84 GG 85 (510)
T ss_pred CC
Confidence 44
No 90
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.27 E-value=6.4e-07 Score=66.09 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC--------CCc----ccEEEEEEcCHHHHHHHHHHhCCCe
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT--------GQS----KHFGFIEFNDPEVAEVVADAMHGYL 119 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~--------~~~----kg~~fv~f~~~~~a~~al~~l~g~~ 119 (156)
..+.||+++||+.+...-|+++|..||.|-.|.+-....+ |.. -.-|||+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4589999999999999999999999999999988655333 222 2248999999999999999999999
Q ss_pred eCCeE
Q 031599 120 LFEHI 124 (156)
Q Consensus 120 i~g~~ 124 (156)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99884
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=1.7e-05 Score=49.21 Aligned_cols=69 Identities=19% Similarity=0.367 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHHHH----HHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 54 TVLYIGRIPHGFYEKEMQ----AFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~----~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..|||.|||.+.....|+ +++..+| .+.++. .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 368999999998886654 5555654 555551 3689999999999999999999999999999999
Q ss_pred ecCC
Q 031599 129 LIPP 132 (156)
Q Consensus 129 ~a~~ 132 (156)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9853
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.14 E-value=1.7e-05 Score=57.61 Aligned_cols=78 Identities=19% Similarity=0.442 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQV 127 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v 127 (156)
...+...+|+.|||..++.+.+..+|.+|....+++++... .+.+||+|.+...+..|...|++..+. ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35566789999999999999999999999999999998775 789999999999999999999998887 777888
Q ss_pred EecC
Q 031599 128 HLIP 131 (156)
Q Consensus 128 ~~a~ 131 (156)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 7764
No 93
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.12 E-value=1.1e-05 Score=64.53 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....|-+.+||+.++++||.+||+-.--+.. +.++.++ .++..|-|||.|.+.+.|+.|+.. |...|+.+-|.|--
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45678999999999999999999987544433 5666674 677899999999999999999965 77778888777765
Q ss_pred c
Q 031599 130 I 130 (156)
Q Consensus 130 a 130 (156)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 94
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=9.5e-06 Score=53.02 Aligned_cols=59 Identities=20% Similarity=0.433 Sum_probs=39.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY 118 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~ 118 (156)
..|++.+++..++.++|+..|..||.|..|.+... -..|||.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 46888899999999999999999999999988654 348999999999999999876644
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.07 E-value=1.9e-05 Score=60.70 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCCCCHHH------HHHHHhhcCCeeEEEEeecCCCC-CcccE--EEEEEcCHHHHHHHHHHhCCCeeCCe
Q 031599 53 ATVLYIGRIPHGFYEKE------MQAFFSQFGAIKRLRIARNKKTG-QSKHF--GFIEFNDPEVAEVVADAMHGYLLFEH 123 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~------l~~~f~~~G~i~~~~i~~~~~~~-~~kg~--~fv~f~~~~~a~~al~~l~g~~i~g~ 123 (156)
..-+||-+|++.+..++ -.++|++||.|..+.+.+.-.+- ..-+. -||+|.+.++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34689999999877665 26789999999998775442111 11222 39999999999999999999999999
Q ss_pred EEEEEecCC
Q 031599 124 ILQVHLIPP 132 (156)
Q Consensus 124 ~i~v~~a~~ 132 (156)
-|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988654
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.07 E-value=2.9e-06 Score=64.81 Aligned_cols=86 Identities=14% Similarity=0.363 Sum_probs=76.3
Q ss_pred CCCCcEEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLY-IGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~-V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++| |++++..++.++|...|..+|.|..++++.++.++..+||+||.|........++.. +...+.++.+.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 44455666 999999999999999999999999999999999999999999999999999999876 7888999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
...+....
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 98876443
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=7.7e-06 Score=59.55 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.++||.||...+++++|+++|..|.....++|... . .-..+|++|.+.+.|..|+..|+|..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 48999999999999999999999988776666322 2 3468999999999999999999998764
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.99 E-value=8.5e-06 Score=62.83 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.....+|||.+|+..+++.+|..+|.++|.|.. +.+-+++.|+..++-|.|+|.+...|++|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445568999999999999999999999988743 667788899999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCC
Q 031599 122 EHILQVHLIPPEHV 135 (156)
Q Consensus 122 g~~i~v~~a~~~~~ 135 (156)
+..|.|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876654
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.9e-05 Score=61.10 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCH------HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-Ce
Q 031599 51 NKATVLYIGRIPHGFYE------KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EH 123 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~------~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~ 123 (156)
.-...|+|.|+|---.. .-|..+|+++|.+..+.++.+.. |..+||.|++|.+..+|+.|++.|||..++ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44568889998874332 34677899999999999998864 559999999999999999999999999886 77
Q ss_pred EEEEEecC
Q 031599 124 ILQVHLIP 131 (156)
Q Consensus 124 ~i~v~~a~ 131 (156)
.+.|..-.
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77777654
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=1.2e-05 Score=58.72 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....+.++|.+++..+.+.+|.+.|..+|.+..... ..+++||+|...+++..|+..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455678999999999999999999999999854433 267999999999999999999999999999999954
Q ss_pred c
Q 031599 130 I 130 (156)
Q Consensus 130 a 130 (156)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.74 E-value=0.00017 Score=60.29 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.....+.|-+.|+|++++-+||.+||.-|-.+-. |.+-++ ..|...|-|-|.|.+.++|.+|...|++..|..+.+.+
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 3455568999999999999999999999976644 444444 68999999999999999999999999999999998887
Q ss_pred Ee
Q 031599 128 HL 129 (156)
Q Consensus 128 ~~ 129 (156)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 65
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.70 E-value=0.0005 Score=53.73 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..+...+.|-+|... ++.+.|-.+|-.||.|..+.+++.+ .|-|.|++.+....++|+..||+..+-|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 345578999999987 5667889999999999999999886 6789999999999999999999999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
++...-
T Consensus 359 ~SkQ~~ 364 (494)
T KOG1456|consen 359 VSKQNF 364 (494)
T ss_pred eccccc
Confidence 987543
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00053 Score=48.79 Aligned_cols=65 Identities=9% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
......|.|++||++.+++||++.....|.++...+.++ |.+.|+|...+++.=|+..|+...+.
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 445568999999999999999999999999999998877 48999999999999999999987654
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.54 E-value=0.00029 Score=55.54 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEEEEe
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQVHL 129 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~-~i~v~~ 129 (156)
++..+++++|+|.++++++++..|..-|....... +.++.+.++++.+.+.++|-.|+..+|.+.+++. -++|++
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafk----ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFK----FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeee----ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 44568999999999999999999988766544432 2344577999999999999999999999988754 799998
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+++
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 865
No 105
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.52 E-value=9.2e-05 Score=57.26 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
....+||+||-|.+|++||.+.+...| .+.++++..++.+|.++|||+|..-+.-++...++.|--..|.|..=.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 334799999999999999999887765 56778888899999999999999999999999999988888887754443
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00039 Score=56.17 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=59.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~ 114 (156)
.-+...+||||+||.-++.++|..+|. -||.|+.+-|-.|+.-+..+|-|=|+|.+..+.-+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 356668999999999999999999998 699999999988888889999999999999999999853
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.0004 Score=39.59 Aligned_cols=52 Identities=17% Similarity=0.402 Sum_probs=41.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al 112 (156)
+.|-|.+.++...+. +..+|..||+|..+.+... ..+.||.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 356788888776644 5558889999999988632 459999999999999885
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=0.00049 Score=56.10 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=56.1
Q ss_pred HHHHHHhhcCCeeEEEEeec---CCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 031599 69 EMQAFFSQFGAIKRLRIARN---KKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (156)
Q Consensus 69 ~l~~~f~~~G~i~~~~i~~~---~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~~~~ 136 (156)
+++.-+..||.|..|.+++. ..-.-+.|.-||+|.+.++++.|...|+|..++++.+...|.......
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 45556778999999998877 223346778999999999999999999999999999999998765443
No 109
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.43 E-value=0.0012 Score=41.02 Aligned_cols=59 Identities=19% Similarity=0.428 Sum_probs=45.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG 117 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g 117 (156)
....+.+||+ .|..+...||.++|..||.|. |.++.+- .|||...+.+.+..++..+.-
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4456788887 999999999999999999964 5566553 899999999999999988763
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.42 E-value=0.0011 Score=51.23 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCcEEEEcCCCC----CCC-------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 52 KATVLYIGRIPH----GFY-------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 52 ~~~~l~V~~l~~----~~t-------~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
..++|.+.|+-. ..+ .++|.+-..+||.+..|.+.... +.|.+-|.|.+.++|..|++.|+|..+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeee
Confidence 445677776543 222 24556667889999999775433 368999999999999999999999999
Q ss_pred CCeEEEEEecCCCCC
Q 031599 121 FEHILQVHLIPPEHV 135 (156)
Q Consensus 121 ~g~~i~v~~a~~~~~ 135 (156)
+|+.|...+...+..
T Consensus 340 dgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 340 DGRQLTASIWDGKTK 354 (382)
T ss_pred cceEEEEEEeCCcce
Confidence 999999998876543
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.38 E-value=0.0019 Score=44.42 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 69 EMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 69 ~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
+|-+.|..||.+.=++++.+ .-||+|.+-..|.+|+ .++|..++|+.|.|....|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 66777888999887777654 6899999999999999 78999999999999987764
No 112
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.37 E-value=0.0012 Score=42.70 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEE-EeecC------CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLR-IARNK------KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~-i~~~~------~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
...-|.|.+.|+..+ ..+-+.|++||.|.+.. +..+. ........-.|+|.++.+|++||.. ||..++|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 345578889999854 66777899999998774 11100 0112256889999999999999954 999998864
Q ss_pred -EEEEec
Q 031599 125 -LQVHLI 130 (156)
Q Consensus 125 -i~v~~a 130 (156)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 445554
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0017 Score=52.55 Aligned_cols=78 Identities=18% Similarity=0.335 Sum_probs=54.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCccc---EEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKK---TGQSKH---FGFIEFNDPEVAEVVADAMHGYLLFEH 123 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~kg---~~fv~f~~~~~a~~al~~l~g~~i~g~ 123 (156)
..-.+.||||+||++++++.|...|..||.+ .+.++.... ---.+| |.|+.|.++..++..+..... ++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 3445789999999999999999999999984 344542211 112456 999999999998888765443 334
Q ss_pred EEEEEecC
Q 031599 124 ILQVHLIP 131 (156)
Q Consensus 124 ~i~v~~a~ 131 (156)
.+.++++.
T Consensus 332 ~~yf~vss 339 (520)
T KOG0129|consen 332 NYYFKVSS 339 (520)
T ss_pred ceEEEEec
Confidence 44444443
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.25 E-value=0.00064 Score=53.31 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCC-eeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGA-IKR--LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~--~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...|.+.+||+..+-++|-+||..|.. |.. ++++.+ ..|..-|-|||+|.+.+.|.+|....|.....++-|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567999999999999999999998754 333 788888 4788999999999999999999999888877788777765
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 115
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.21 E-value=0.0029 Score=37.16 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQF---GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM 115 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~---G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l 115 (156)
.+..|+|.|+.. .+.++|+.+|..| .....+.++.|. .|-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 456799999976 5558899999988 235788899885 7999999999999998654
No 116
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.12 E-value=0.0003 Score=52.23 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=51.2
Q ss_pred HHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 69 EMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 69 ~l~~~f~-~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
++...|. +||+|.++.+..+ ..--..|-.||.|...++|++|+..||+..++|++|+..+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444444 7999999876655 344568899999999999999999999999999999998875
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.12 E-value=0.0015 Score=51.34 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhh----cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQ----FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~----~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~ 123 (156)
..-.|...+||+++++.++..||.+ .|....+.++..+ +|+..|-|||.|..+++|+.|+.. |...|+-+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHH
Confidence 3456777899999999999999973 2455667777764 899999999999999999999975 55444433
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.03 E-value=0.00094 Score=52.98 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=57.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec---CCCCC----------cccEEEEEEcCHHHHHHHHHHh
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN---KKTGQ----------SKHFGFIEFNDPEVAEVVADAM 115 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~----------~kg~~fv~f~~~~~a~~al~~l 115 (156)
.+-..++|.+-|||.+-.-+-|.++|+.+|.|..|+|... +.+.. .+-||+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4457889999999999888999999999999999998765 22221 2568999999999999999877
Q ss_pred CC
Q 031599 116 HG 117 (156)
Q Consensus 116 ~g 117 (156)
+.
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 54
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.93 E-value=0.0023 Score=50.33 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=59.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT---GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...|.|.||.+.++.++++.+|+..|.|.++.+..+... ......|||.|.+...+..|- .|-++.+-++-|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 348999999999999999999999999999987654222 234568999999999888876 5666666666555554
Q ss_pred c
Q 031599 130 I 130 (156)
Q Consensus 130 a 130 (156)
+
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 4
No 120
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0012 Score=54.47 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee---CCeEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQ-FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---FEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i---~g~~i 125 (156)
....+.|||.||-.-+|.-+|+.+++. .|.|.+. |+.. .+..|||.|.+.++|-+....|||..+ +.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345679999999999999999999995 5555555 4433 378999999999999999999999764 56677
Q ss_pred EEEecCC
Q 031599 126 QVHLIPP 132 (156)
Q Consensus 126 ~v~~a~~ 132 (156)
.+.|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 7777653
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.71 E-value=0.0013 Score=52.29 Aligned_cols=78 Identities=15% Similarity=0.294 Sum_probs=61.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeEEEEEecCC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL-LFEHILQVHLIPP 132 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~-i~g~~i~v~~a~~ 132 (156)
.+|++||.+..+..+++.+|+..--. ..-.++. -||+||.+.+..-+-.|++.++|.. +.|.++.+..+-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 58999999999999999999753111 1112222 4699999999999999999999965 8899999999988
Q ss_pred CCCCCcc
Q 031599 133 EHVHPKL 139 (156)
Q Consensus 133 ~~~~~~~ 139 (156)
+..+++-
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 7665543
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.60 E-value=0.00027 Score=60.10 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=59.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.++||+||+..+.+.+|...|..+|.+..+.+.....+++.+|.||+.|...+++.+|+...++..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 47899999999999999999999999988877655678899999999999999999999776665555
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.54 E-value=0.0011 Score=56.57 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
..+||.|.|+..|.+.++.++..+|.+.++.++..+ .|+.+|.++|.|.+..++.++....+...++.+.+.|.++.|.
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 579999999999999999999999999999988884 8999999999999999999999888888888888888887764
Q ss_pred CCC
Q 031599 134 HVH 136 (156)
Q Consensus 134 ~~~ 136 (156)
..+
T Consensus 816 ~~K 818 (881)
T KOG0128|consen 816 RDK 818 (881)
T ss_pred ccc
Confidence 433
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.38 E-value=0.0052 Score=52.90 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC--CeEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF--EHILQ 126 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~--g~~i~ 126 (156)
.......+|+++|...+....+...|..||.|..+.+-.. ..|+||.|.+...++.|+..+-|.-++ .+++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3456678999999999999999999999999999876333 469999999999999999999999887 45788
Q ss_pred EEecCCCC
Q 031599 127 VHLIPPEH 134 (156)
Q Consensus 127 v~~a~~~~ 134 (156)
|.++.+-.
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 88886543
No 125
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.34 E-value=0.031 Score=38.32 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCCcEEEEcCCCCCCCH-H---HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 50 VNKATVLYIGRIPHGFYE-K---EMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~-~---~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
+++-.+|.|.=|..++.. + .+.+.++.||+|.++.+. ++..|.|.|.+..+|=.|+..++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 556678888866665443 3 445557789999998542 356999999999999999988876 4557778
Q ss_pred EEEecCC
Q 031599 126 QVHLIPP 132 (156)
Q Consensus 126 ~v~~a~~ 132 (156)
++.|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 8887653
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.33 E-value=0.023 Score=43.36 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCeeEEEEeecCCCCCc-ccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 68 KEMQAFFSQFGAIKRLRIARNKKTGQS-KHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 68 ~~l~~~f~~~G~i~~~~i~~~~~~~~~-kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
+++..-.++||.|..|.|...+..... .---||+|...++|..|+-.|||..++|+.+..++..-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 456677889999999887666422222 23479999999999999999999999999999888764
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.20 E-value=0.0041 Score=52.31 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
+......|||..||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||.|..++++..|+.--+-+.++.+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4556679999999999999999999987666665 7777764 8888999999999988888887554556677788888
Q ss_pred EecCC
Q 031599 128 HLIPP 132 (156)
Q Consensus 128 ~~a~~ 132 (156)
.....
T Consensus 509 ~si~~ 513 (944)
T KOG4307|consen 509 DSIAD 513 (944)
T ss_pred echhh
Confidence 76543
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.15 E-value=0.0085 Score=44.72 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=55.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG 117 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g 117 (156)
..|||.||+..++.+.+.+.|..||+|....++-| ..++..+-++|.|...-.+..|+..++.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhcc
Confidence 46999999999999999999999999987666555 3688888999999999999999988743
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.98 E-value=0.0025 Score=49.13 Aligned_cols=80 Identities=16% Similarity=0.387 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHhhcCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 54 TVLYIGRIPHGFYEKEM---QAFFSQFGAIKRLRIARNKK---TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l---~~~f~~~G~i~~~~i~~~~~---~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
+.+||-+|+.....+.+ ..+|.+||.|..+.+..++. ...+-..+||+|...++|..||...+|..++|+.+..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888887665544 45688999999998877641 1123346999999999999999999999999998777
Q ss_pred EecCCC
Q 031599 128 HLIPPE 133 (156)
Q Consensus 128 ~~a~~~ 133 (156)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 666544
No 130
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.86 E-value=0.08 Score=41.79 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCC--CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEE
Q 031599 51 NKATVLYIGRIP--HGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQ 126 (156)
Q Consensus 51 ~~~~~l~V~~l~--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~ 126 (156)
.....|.+.-|. +.+|.+-|..+....|.+.++.|.+. ++ --|.|+|.+.+.|++|...|||..|.. -.|.
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 334455555444 46888999999999999999987655 23 479999999999999999999988753 3688
Q ss_pred EEecCCCCC
Q 031599 127 VHLIPPEHV 135 (156)
Q Consensus 127 v~~a~~~~~ 135 (156)
|++++|...
T Consensus 193 IeyAkP~rl 201 (494)
T KOG1456|consen 193 IEYAKPTRL 201 (494)
T ss_pred EEecCccee
Confidence 888887644
No 131
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.81 E-value=0.26 Score=32.42 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.+.+...|..++.++|..+.+.+ ..|..++++++. ...+-..++.|.+...|......+||..++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444444445556666555554 456778888873 346778999999999999999999998765
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.68 E-value=0.017 Score=41.18 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh-cCCe---eEEE--EeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQ-FGAI---KRLR--IARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-- 122 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i---~~~~--i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g-- 122 (156)
.....|.|++||+..|++++...+.. ++.- ..+. ..........-.-|||.|.+.+++......++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34458999999999999998776655 5554 2332 11112222234579999999999999999999976532
Q ss_pred ---eEEEEEecC
Q 031599 123 ---HILQVHLIP 131 (156)
Q Consensus 123 ---~~i~v~~a~ 131 (156)
.+..|.+|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 245666665
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.57 E-value=0.0038 Score=53.69 Aligned_cols=82 Identities=15% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...+.+||++||+..+++.+|+..|..+|.+.+|.|-..+ -+..--|+||.|.+...+..|+..+.+..|....+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4456799999999999999999999999999999885543 223345999999999999999999999888766677777
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
..+
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 754
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.021 Score=46.87 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=54.3
Q ss_pred cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee---C-CeEEEEEecCCCCCCCccccccccccc
Q 031599 77 FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---F-EHILQVHLIPPEHVHPKLLYFVEMSIQ 148 (156)
Q Consensus 77 ~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i---~-g~~i~v~~a~~~~~~~~~~~~~~~~~~ 148 (156)
.|...++.++.|-.+....|||||.|.+.+++..+.+.+||... + .+.+.+.||+-+.....+.+..+..+.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm 488 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLM 488 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhccccc
Confidence 57777888888877888999999999999999999999999643 3 455777777765554444444444443
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.33 E-value=0.031 Score=46.79 Aligned_cols=72 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.++..++||+|+...+..+-++.++..+|-|..+... .|||..|..+...-+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4556689999999999999999999999988776432 2999999999999999999999999999887777
Q ss_pred c
Q 031599 130 I 130 (156)
Q Consensus 130 a 130 (156)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 4
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.20 E-value=0.094 Score=37.67 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=46.4
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEEEecCCCC
Q 031599 66 YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQVHLIPPEH 134 (156)
Q Consensus 66 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~--g~~i~g~~i~v~~a~~~~ 134 (156)
....|+.+|..|+.+........ -+-..|.|.+.++|.+|...|+ +..+.|..++|-++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999999888766655 4578999999999999999999 999999999999986543
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.72 E-value=0.16 Score=30.79 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=38.4
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 55 VLYIG-RIPHGFYEKEMQAFFSQFGA-----IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 55 ~l~V~-~l~~~~t~~~l~~~f~~~G~-----i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
++||. +--..++..+|-.++...+. |-.+.+..+ |+||+... +.+..++..|++..+.|+++.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 34553 23335778888888876544 345655444 89999954 58889999999999999999998
Q ss_pred ec
Q 031599 129 LI 130 (156)
Q Consensus 129 ~a 130 (156)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=0.31 Score=37.48 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=48.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
..=|-|.++++.-. .-|-..|.+||.|...... ..-.+-+|.|.+..+|++||.. ||..|+|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 44455667887655 4456679999999877543 2245889999999999999954 999998874
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.32 E-value=0.88 Score=27.03 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 64 GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 64 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.++-.+++..+..|+- . .+..+ +-.-||.|.+..+|++|....||..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d------~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDD------RTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEec------CCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3566899999999865 2 33344 235699999999999999999999888877665
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.11 E-value=0.12 Score=39.64 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....++|++++.+.+.+.+...++..+|....+.+.........++++++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35678999999999999888888889998877777665567889999999999999999999653334566665555544
Q ss_pred C
Q 031599 131 P 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.96 E-value=0.15 Score=41.38 Aligned_cols=73 Identities=21% Similarity=0.395 Sum_probs=56.8
Q ss_pred EEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 55 VLYIGRIPHGF-YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 55 ~l~V~~l~~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
.+-+...++.. +-.+|...|.+||.|..|.+-.. -..|.|+|.+.-+|-.|- ..++..|+++.|.|.|-.+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 34444455553 44789999999999999977444 358999999999986666 46999999999999998874
Q ss_pred C
Q 031599 134 H 134 (156)
Q Consensus 134 ~ 134 (156)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.42 E-value=0.34 Score=42.13 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=60.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEEEecCC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQVHLIPP 132 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~--i~g~~i~v~~a~~ 132 (156)
+.++.|.+-..+-..|..+|..||.+.+....++ -..+.|+|...+.|-.|+..|+|.. +.|-+.+|.++++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455556667778889999999999999987777 4589999999999999999999976 4588899998875
Q ss_pred C
Q 031599 133 E 133 (156)
Q Consensus 133 ~ 133 (156)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.40 E-value=2.4 Score=34.53 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g 122 (156)
...|+|-.+|..++-.||-.|...+ ..|..++++++. ...+=..+|.|.+..+|......+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999998875 567889999973 3345579999999999999999999987663
No 144
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.87 E-value=0.92 Score=37.80 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=53.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEEE
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQVH 128 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~v~ 128 (156)
-+.|.+.-||..+-.++++.+|.. +..+.+|.+-.+. -=||+|.+..+|+.|...|.. ..+.|+.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 357889999999999999999964 6778888775552 579999999999999877664 23556655444
Q ss_pred e
Q 031599 129 L 129 (156)
Q Consensus 129 ~ 129 (156)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=4.3 Score=32.68 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=48.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADA 114 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~ 114 (156)
+=++.|-|.++|.....+||-..|..|+. -..|.|+.+. ++|..|.+...|..||-.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 44688999999999888999999999865 4678888884 899999999999999843
No 146
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=77.47 E-value=7.4 Score=22.77 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=17.2
Q ss_pred HHHHHHHhhcCCeeEEEEeec
Q 031599 68 KEMQAFFSQFGAIKRLRIARN 88 (156)
Q Consensus 68 ~~l~~~f~~~G~i~~~~i~~~ 88 (156)
.+|+++|+..|+|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 589999999999988766443
No 147
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.67 E-value=18 Score=30.70 Aligned_cols=81 Identities=20% Similarity=0.331 Sum_probs=60.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeecCC----------CCC-------------c-------
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQF----GAIKRLRIARNKK----------TGQ-------------S------- 94 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~----G~i~~~~i~~~~~----------~~~-------------~------- 94 (156)
...+++|-|-|+.|. +...+|..+|..| |.|.+|.|....+ .|. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445679999999997 7778999998875 6888887755421 111 0
Q ss_pred --------c---------cEEEEEEcCHHHHHHHHHHhCCCeeC--CeEEEEEec
Q 031599 95 --------K---------HFGFIEFNDPEVAEVVADAMHGYLLF--EHILQVHLI 130 (156)
Q Consensus 95 --------k---------g~~fv~f~~~~~a~~al~~l~g~~i~--g~~i~v~~a 130 (156)
| =||.|+|.+...|......++|..+. +..+.+++-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 17999999999999999999999886 445555554
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.62 E-value=11 Score=29.02 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=35.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEEcCH
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDP 105 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~kg~~fv~f~~~ 105 (156)
.-|+++||+.++.-.||+..+...+.. .++.+.- +.|-||+-|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 459999999999999999999887654 4454432 367899999664
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=71.52 E-value=0.54 Score=37.49 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=55.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
.+++|++|+..+-..++..+|..+|++...++- .+....+|-++|........|+.. +|..+.-+...+.+..|.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhhcCcc
Confidence 679999999999999999999999999887763 344456788999988888888854 776555333333333443
No 150
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.92 E-value=13 Score=28.79 Aligned_cols=82 Identities=11% Similarity=0.205 Sum_probs=56.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-------CCCCcccEEEEEEcCHHHHHHH----HHHhCC-
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK-------KTGQSKHFGFIEFNDPEVAEVV----ADAMHG- 117 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~-------~~~~~kg~~fv~f~~~~~a~~a----l~~l~g- 117 (156)
.-.++.|...|+..+++-..+-.-|..||+|+++.++.+. ...+......+.|-+...+... ++.|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 4456678889999988888888889999999999998774 1223456888889887765322 333332
Q ss_pred -CeeCCeEEEEEecC
Q 031599 118 -YLLFEHILQVHLIP 131 (156)
Q Consensus 118 -~~i~g~~i~v~~a~ 131 (156)
..+....+.+.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 23555666666643
No 151
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.46 E-value=1 Score=37.54 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
...+.+|+.|+++.++-.+|..++..+.-...+.+...-.......++||+|.--.....|+-.||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 34568999999999999999999988766555544333233445778999999777777777788887665443
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=59.30 E-value=0.31 Score=39.26 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE-eecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRI-ARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
..+.+-+.|+|+-..++.+..++..||.+..|.. ..++.+ -.--|+|...+.++.++..|+|..+...-+.|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 3457889999999999999999999999988744 333222 23346788899999999999999998888888775
Q ss_pred C
Q 031599 131 P 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 4
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.15 E-value=16 Score=28.15 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCCCC------------CCCHHHHHHHHhhcCCeeEEEEee
Q 031599 50 VNKATVLYIGRIPH------------GFYEKEMQAFFSQFGAIKRLRIAR 87 (156)
Q Consensus 50 ~~~~~~l~V~~l~~------------~~t~~~l~~~f~~~G~i~~~~i~~ 87 (156)
...+.+||+.+||- ..+++-|+..|..||.|..+.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 44556777777764 256678999999999999887754
No 154
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=58.80 E-value=2 Score=31.83 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=57.3
Q ss_pred CCCCcEEEEcC----CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 031599 50 VNKATVLYIGR----IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (156)
Q Consensus 50 ~~~~~~l~V~~----l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~ 119 (156)
.....+++.|+ |...++++.+...|.+.|++..+++..+. .++.+.++|+++........++...++..
T Consensus 77 ~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 77 DEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred chhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34456788887 88889999999999999999999998885 58899999999998888888887776643
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=50.95 E-value=21 Score=25.69 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=43.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVA 112 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al 112 (156)
......+++.+++..++...+...|..+|.+....+...........+.++.+.....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 455668999999999999999999999999977766555433334444444444433333333
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=48.39 E-value=37 Score=20.35 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=38.7
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 68 KEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 68 ~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.+|.+.|...| ++.+++.+..+.++.....-+|+....-+... .|+-..+.|+++.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35666777665 67788888887777777778888765432222 34445677787666543
No 157
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.03 E-value=20 Score=25.76 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCCCCHH-----HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EE
Q 031599 52 KATVLYIGRIPHGFYEK-----EMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-IL 125 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~-----~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~-~i 125 (156)
-+..+++.+++..+..+ ....+|.+|.+.....+.+. .+.--|.|.+...+..|...+++..+.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34456666776654332 23344544444433333333 45667889999999999999999999988 77
Q ss_pred EEEecCCCC
Q 031599 126 QVHLIPPEH 134 (156)
Q Consensus 126 ~v~~a~~~~ 134 (156)
..-++++..
T Consensus 83 k~yfaQ~~~ 91 (193)
T KOG4019|consen 83 KLYFAQPGH 91 (193)
T ss_pred EEEEccCCC
Confidence 777776543
No 158
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=48.03 E-value=57 Score=19.28 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 68 KEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 68 ~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
++|.+.|...| ++.++.-+..+.++.....-||++....+... .++=..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 35666666554 67788777777677777888888876544222 3344556677777765543
No 159
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.88 E-value=15 Score=26.40 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHH
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQ-FGAIKRLRIARNKKTG--QSKHFGFIEFNDPEVAEVVADA 114 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~--~~kg~~fv~f~~~~~a~~al~~ 114 (156)
.+++|.. .++++|..+... -|.+..+.+-+. ..+ ..+|.-||+|...+.+.+++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3456554 455544444332 267777766544 234 6789999999999999998764
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.88 E-value=33 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=25.3
Q ss_pred EEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 98 GFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 98 ~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
|||+|.+..+|+.|++.+.... ...+.+..|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 7999999999999998655544 34557777764
No 161
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.80 E-value=86 Score=20.67 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=25.7
Q ss_pred CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHH
Q 031599 66 YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND-PEVAEVVA 112 (156)
Q Consensus 66 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~-~~~a~~al 112 (156)
+...|.+.|..|.++. +....++ ..+.|+++|.|.. -.-...|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4578999999998865 4444553 3678999999974 44445554
No 162
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=44.64 E-value=40 Score=27.06 Aligned_cols=70 Identities=17% Similarity=0.356 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecC--CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNK--KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~i~~~~--~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
....+.|.+||+..++.++.+-+.++-. +....+.... ......+.+||.|...+++..-...++|+.+.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3456888999999999887776666432 1122222110 01112568999999999998888888987643
No 163
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.46 E-value=4.7 Score=32.87 Aligned_cols=76 Identities=7% Similarity=-0.118 Sum_probs=55.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..|+..++...++.++.-.|..||-|..+.+-+.-..+-..-.+|+.... .+++.|+.-+--..+.|..+++.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45677888899999999999999999888776655566667778887754 45566665555555556667777765
No 164
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.00 E-value=58 Score=20.46 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.1
Q ss_pred EEEEEcCHHHHHHHHHHhCC-CeeCCeEEEEEecC
Q 031599 98 GFIEFNDPEVAEVVADAMHG-YLLFEHILQVHLIP 131 (156)
Q Consensus 98 ~fv~f~~~~~a~~al~~l~g-~~i~g~~i~v~~a~ 131 (156)
|+|+|.+..-|++.++.-.. ..+++..+.|....
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe
Confidence 68999999999999864222 33567777676654
No 165
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.40 E-value=48 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=28.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLR 84 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~ 84 (156)
......+|+-|+|..++++.|..+.++.|-+.++.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 44556799999999999999999999887655443
No 166
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.91 E-value=95 Score=18.98 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=24.3
Q ss_pred CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 031599 79 AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (156)
Q Consensus 79 ~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~ 119 (156)
.|.++..+.+ .+||-||+=.+..++..|++.+.+..
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 3455544333 58999999999999999997766543
No 167
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.77 E-value=1.6e+02 Score=24.61 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=42.8
Q ss_pred EEcCCCCCCC---HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 57 YIGRIPHGFY---EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 57 ~V~~l~~~~t---~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
+||||+.... ...+..+-.+||++-.+++-. .-.|...+.+.|+.++.. |+..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4677666433 345666666899999777621 357888999999999966 8888888875
No 168
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=27.37 E-value=29 Score=25.26 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEecC-CCCCCCccccccccccchhhheecC
Q 031599 104 DPEVAEVVADAMHGYLLFEHILQVHLIP-PEHVHPKLLYFVEMSIQELVAICLG 156 (156)
Q Consensus 104 ~~~~a~~al~~l~g~~i~g~~i~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (156)
..+.+..+++.|++..++|..+....-. ......+.....-.++++..-+|+|
T Consensus 15 ~~NPs~e~vk~L~~~~i~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG 68 (207)
T COG2039 15 PINPSWEAVKELNGRIIGGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIG 68 (207)
T ss_pred CCChHHHHHHhcCcccccCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEec
Confidence 4567888889999999888876655543 2233344445555566666666665
No 169
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=1.1e+02 Score=23.26 Aligned_cols=35 Identities=6% Similarity=0.074 Sum_probs=25.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~ 88 (156)
....|+|||+.++..-+..++...-.+..+.++.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 35679999999999999988877555545544443
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=24.96 E-value=1.9e+02 Score=18.58 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcC
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND 104 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~ 104 (156)
-+||++++..+-+.--..+-..++.-.-+ ++.. +..-.||.|-++-+
T Consensus 29 GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc--CCCCCCcEEEecCC
Confidence 49999988887765444444444443222 2222 12234899888864
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.80 E-value=1.8e+02 Score=18.11 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEc
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFN 103 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~ 103 (156)
-+||++++..+-+.-...+....+.-.-+-+-.+ .+ -.||.|-++-
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~n--eqG~~~~t~G 72 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-NN--EQGFDFRTLG 72 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-CC--CCCEEEEEeC
Confidence 4999999998887655555554444333322222 12 5788888873
No 172
>PF15063 TC1: Thyroid cancer protein 1
Probab=24.59 E-value=55 Score=19.97 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=22.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCe
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAI 80 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i 80 (156)
++--+.||-.+++...|+.+|...|..
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccch
Confidence 345567888899999999999998874
No 173
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=22.42 E-value=5.1e+02 Score=22.42 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=49.7
Q ss_pred cEEEEc-CCCCCCCHHHHHHHHhhcCCee-----EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 54 TVLYIG-RIPHGFYEKEMQAFFSQFGAIK-----RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 54 ~~l~V~-~l~~~~t~~~l~~~f~~~G~i~-----~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.++||. +-...++..+|-.++..-+.|. .+.|.. .|.||+.. ...+...+..|++..+.|+++.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 346664 3444578888888877655443 344433 38999985 46688889999999999999999
Q ss_pred EecC
Q 031599 128 HLIP 131 (156)
Q Consensus 128 ~~a~ 131 (156)
..+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 174
>PRK10905 cell division protein DamX; Validated
Probab=22.30 E-value=2.7e+02 Score=22.03 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCC
Q 031599 61 IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ-SKHFGFIEFNDPEVAEVVADAMHGY 118 (156)
Q Consensus 61 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-~kg~~fv~f~~~~~a~~al~~l~g~ 118 (156)
|.-..+.+.|..|..+.|- ....+.....+|+ ---.-+-.|.+.++|++|+..|-..
T Consensus 252 L~A~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 252 LSSSSNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred EEecCCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 4444566788888777643 3222322222333 1223455688999999999987643
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.89 E-value=1.6e+02 Score=17.28 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=19.7
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 96 HFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 96 g~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
.++++.|.+..+|-++-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3789999999999888777665544
No 176
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=42 Score=27.23 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCCH--------HHHHHHHhh--cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 031599 54 TVLYIGRIPHGFYE--------KEMQAFFSQ--FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113 (156)
Q Consensus 54 ~~l~V~~l~~~~t~--------~~l~~~f~~--~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~ 113 (156)
+.+|+.+.+..... +++..+|.. .+.+..+..-++.....++|.-|++|.....+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45677766665443 388888887 5677777777775577889999999999999998873
No 177
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.61 E-value=1.2e+02 Score=22.75 Aligned_cols=24 Identities=13% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHh
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFS 75 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~ 75 (156)
....++|+|||+.++..-|.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 355789999999999999999887
Done!