Query 031599
Match_columns 156
No_of_seqs 129 out of 1506
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5E-23 1.7E-27 132.9 11.8 83 50-132 16-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 2.4E-22 8.2E-27 132.0 10.3 88 51-138 4-91 (110)
3 2lxi_A RNA-binding protein 10; 99.9 8.5E-23 2.9E-27 129.8 7.2 88 53-140 1-90 (91)
4 3md1_A Nuclear and cytoplasmic 99.9 4.1E-21 1.4E-25 119.4 12.3 81 54-134 2-82 (83)
5 2do4_A Squamous cell carcinoma 99.9 8.9E-21 3E-25 122.1 13.9 85 50-135 14-98 (100)
6 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.8E-21 1.3E-25 120.6 11.7 83 51-133 4-86 (87)
7 2dgo_A Cytotoxic granule-assoc 99.9 2E-20 6.7E-25 123.4 14.6 89 50-138 12-100 (115)
8 2cq0_A Eukaryotic translation 99.9 9.6E-21 3.3E-25 122.5 12.4 87 50-136 12-98 (103)
9 2dgs_A DAZ-associated protein 99.9 9E-21 3.1E-25 121.8 12.1 87 50-137 7-93 (99)
10 1x5u_A Splicing factor 3B subu 99.9 1E-20 3.5E-25 122.7 12.3 87 50-136 12-98 (105)
11 2cpz_A CUG triplet repeat RNA- 99.9 1.4E-20 4.7E-25 124.2 13.0 87 50-136 22-108 (115)
12 1whw_A Hypothetical protein ri 99.9 1E-20 3.6E-25 121.5 12.0 87 50-136 5-91 (99)
13 2dnm_A SRP46 splicing factor; 99.9 5.8E-21 2E-25 123.6 10.7 87 50-136 10-96 (103)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.9 8.6E-21 2.9E-25 118.5 11.1 82 50-131 4-85 (85)
15 2lkz_A RNA-binding protein 5; 99.9 2.4E-21 8.2E-26 124.0 8.6 83 50-132 6-94 (95)
16 4f25_A Polyadenylate-binding p 99.9 9.3E-21 3.2E-25 125.2 11.7 83 52-136 4-86 (115)
17 2dnz_A Probable RNA-binding pr 99.9 1.3E-20 4.4E-25 120.1 11.9 86 51-136 3-88 (95)
18 2cqc_A Arginine/serine-rich sp 99.9 1.6E-20 5.6E-25 119.6 12.4 83 50-132 12-94 (95)
19 2e5h_A Zinc finger CCHC-type a 99.9 1.7E-20 5.9E-25 119.3 12.1 82 50-131 13-94 (94)
20 2x1f_A MRNA 3'-END-processing 99.8 1.5E-20 5E-25 120.3 11.6 83 53-135 2-84 (96)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.2E-21 3.2E-25 122.4 10.7 88 50-137 9-96 (102)
22 1x4h_A RNA-binding protein 28; 99.8 2.5E-20 8.5E-25 122.0 12.6 88 50-137 12-105 (111)
23 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-20 4.5E-25 121.6 11.0 87 50-136 9-95 (102)
24 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-20 4.8E-25 122.3 11.2 87 50-136 10-99 (106)
25 2cph_A RNA binding motif prote 99.8 2.6E-20 8.9E-25 121.1 12.3 87 50-136 12-100 (107)
26 2la6_A RNA-binding protein FUS 99.8 2.4E-20 8.3E-25 119.9 11.8 83 49-131 9-99 (99)
27 1x5t_A Splicing factor 3B subu 99.8 1.1E-20 3.8E-25 120.6 10.2 86 51-136 3-89 (96)
28 1p27_B RNA-binding protein 8A; 99.8 2.1E-20 7.1E-25 121.5 11.3 84 51-134 21-104 (106)
29 2d9p_A Polyadenylate-binding p 99.8 2.8E-20 9.6E-25 120.3 11.9 85 50-136 12-96 (103)
30 2dnh_A Bruno-like 5, RNA bindi 99.8 5.1E-20 1.7E-24 119.4 13.1 86 50-136 12-100 (105)
31 3p5t_L Cleavage and polyadenyl 99.8 2.4E-21 8.2E-26 122.6 6.6 82 54-135 2-85 (90)
32 2jrs_A RNA-binding protein 39; 99.8 4.3E-20 1.5E-24 120.8 12.7 85 50-134 23-107 (108)
33 1oo0_B CG8781-PA, drosophila Y 99.8 2.4E-20 8.2E-25 122.0 11.2 86 50-135 23-108 (110)
34 2cpf_A RNA binding motif prote 99.8 2.3E-20 7.9E-25 119.6 10.9 86 51-136 3-91 (98)
35 2cqd_A RNA-binding region cont 99.8 4.8E-20 1.6E-24 121.7 12.7 85 50-135 14-98 (116)
36 2dng_A Eukaryotic translation 99.8 5.2E-20 1.8E-24 119.1 12.6 85 50-136 12-96 (103)
37 2khc_A Testis-specific RNP-typ 99.8 6.6E-20 2.3E-24 121.3 13.4 83 49-131 36-118 (118)
38 2cpe_A RNA-binding protein EWS 99.8 3.4E-20 1.1E-24 121.9 11.7 87 50-136 12-106 (113)
39 4a8x_A RNA-binding protein wit 99.8 2.6E-20 8.9E-25 116.9 10.7 83 52-134 3-86 (88)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 6E-20 2.1E-24 124.8 13.1 90 49-138 38-127 (139)
41 1wi8_A EIF-4B, eukaryotic tran 99.8 4E-20 1.4E-24 119.9 11.7 86 50-137 12-98 (104)
42 3ns6_A Eukaryotic translation 99.8 4.1E-21 1.4E-25 124.0 6.6 83 51-133 4-93 (100)
43 2div_A TRNA selenocysteine ass 99.8 3.5E-20 1.2E-24 119.0 10.8 86 50-135 6-96 (99)
44 2cq3_A RNA-binding protein 9; 99.8 1.5E-19 5.3E-24 116.8 13.8 86 49-136 11-96 (103)
45 2fy1_A RNA-binding motif prote 99.8 4.2E-20 1.4E-24 122.3 11.2 85 50-135 4-88 (116)
46 2dgx_A KIAA0430 protein; RRM d 99.8 7.7E-20 2.6E-24 117.0 11.8 83 51-136 7-93 (96)
47 2dh8_A DAZ-associated protein 99.8 4.3E-20 1.5E-24 119.9 10.7 87 50-137 13-99 (105)
48 2kxn_B Transformer-2 protein h 99.8 2.8E-20 9.4E-25 125.4 10.0 86 49-134 42-127 (129)
49 3n9u_C Cleavage and polyadenyl 99.8 4.2E-20 1.4E-24 128.3 11.1 84 51-134 53-138 (156)
50 3ulh_A THO complex subunit 4; 99.8 1E-19 3.4E-24 118.4 12.3 81 50-131 26-106 (107)
51 3ucg_A Polyadenylate-binding p 99.8 6.3E-20 2.2E-24 115.5 10.9 80 53-133 6-85 (89)
52 2dhg_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 119.9 10.1 88 50-138 6-95 (104)
53 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-19 7E-24 116.2 13.5 85 50-136 12-96 (103)
54 2ywk_A Putative RNA-binding pr 99.8 7.3E-20 2.5E-24 116.6 11.1 82 50-132 13-94 (95)
55 3s7r_A Heterogeneous nuclear r 99.8 1.1E-19 3.8E-24 114.0 11.7 80 50-130 8-87 (87)
56 2rs2_A Musashi-1, RNA-binding 99.8 5.5E-20 1.9E-24 120.4 10.5 87 50-137 22-108 (109)
57 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-19 6.4E-24 124.7 13.4 87 50-136 36-122 (156)
58 2cqp_A RNA-binding protein 12; 99.8 6.7E-20 2.3E-24 117.5 10.0 85 50-134 12-96 (98)
59 2do0_A HnRNP M, heterogeneous 99.8 3.8E-19 1.3E-23 116.9 13.8 86 50-136 12-97 (114)
60 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-19 4.6E-24 114.7 11.2 85 50-136 5-89 (92)
61 1sjq_A Polypyrimidine tract-bi 99.8 6.9E-20 2.3E-24 119.0 10.0 85 49-139 12-98 (105)
62 2cqg_A TDP-43, TAR DNA-binding 99.8 3.5E-19 1.2E-23 115.1 13.3 85 50-136 12-96 (103)
63 3ex7_B RNA-binding protein 8A; 99.8 6.8E-20 2.3E-24 122.6 10.1 87 50-136 19-105 (126)
64 2dgw_A Probable RNA-binding pr 99.8 2.6E-19 8.9E-24 113.3 12.2 82 50-134 7-88 (91)
65 2kt5_A RNA and export factor-b 99.8 1E-18 3.5E-23 116.6 15.6 86 50-136 32-117 (124)
66 1s79_A Lupus LA protein; RRM, 99.8 6.7E-20 2.3E-24 118.9 9.4 81 50-132 8-88 (103)
67 1p1t_A Cleavage stimulation fa 99.8 6.7E-20 2.3E-24 118.6 9.3 85 52-136 7-91 (104)
68 1x4a_A Splicing factor, argini 99.8 5.8E-19 2E-23 115.2 13.9 84 50-136 19-102 (109)
69 2kn4_A Immunoglobulin G-bindin 99.8 1.9E-19 6.6E-24 124.7 12.3 87 50-136 67-153 (158)
70 2m2b_A RNA-binding protein 10; 99.8 3.3E-20 1.1E-24 125.2 7.9 86 50-136 20-111 (131)
71 2cq4_A RNA binding motif prote 99.8 9.4E-20 3.2E-24 120.0 9.9 82 51-133 23-104 (114)
72 1x4b_A Heterogeneous nuclear r 99.8 9.9E-20 3.4E-24 120.2 10.0 86 51-137 25-110 (116)
73 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.3E-19 1.1E-23 121.0 12.5 82 49-130 59-140 (140)
74 2ek1_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 117.2 8.1 83 50-132 12-94 (95)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.2E-19 7.4E-24 125.6 11.7 87 50-136 69-155 (165)
76 1x5o_A RNA binding motif, sing 99.8 6.4E-19 2.2E-23 115.9 13.1 83 50-133 22-112 (114)
77 2jwn_A Embryonic polyadenylate 99.8 1.2E-19 4E-24 121.1 9.5 82 52-134 35-116 (124)
78 2err_A Ataxin-2-binding protei 99.8 2.4E-19 8.1E-24 117.3 10.4 83 49-133 25-107 (109)
79 2mss_A Protein (musashi1); RNA 99.8 5E-20 1.7E-24 112.5 6.7 75 55-130 1-75 (75)
80 3r27_A HnRNP L, heterogeneous 99.8 4.2E-19 1.4E-23 114.2 11.2 79 50-134 18-98 (100)
81 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-20 8.4E-25 120.2 5.5 85 50-136 14-98 (101)
82 2ad9_A Polypyrimidine tract-bi 99.8 3.2E-19 1.1E-23 118.4 11.0 83 50-138 28-112 (119)
83 2lea_A Serine/arginine-rich sp 99.8 6.8E-20 2.3E-24 124.4 7.7 88 49-136 43-130 (135)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.7E-20 1.6E-24 118.9 6.4 83 50-134 16-99 (100)
85 2dis_A Unnamed protein product 99.8 2.4E-19 8.3E-24 117.0 9.9 86 51-136 6-95 (109)
86 1why_A Hypothetical protein ri 99.8 7.6E-19 2.6E-23 112.4 12.0 80 50-135 14-95 (97)
87 1x4e_A RNA binding motif, sing 99.8 2.8E-20 9.6E-25 116.3 5.2 81 51-131 3-83 (85)
88 2cq1_A PTB-like protein L; RRM 99.8 9.1E-19 3.1E-23 113.2 12.4 82 50-137 12-95 (101)
89 2cpi_A CCR4-NOT transcription 99.8 2.5E-19 8.4E-24 117.6 9.9 85 51-135 13-103 (111)
90 2nlw_A Eukaryotic translation 99.8 4.4E-19 1.5E-23 115.3 10.0 81 51-133 13-100 (105)
91 2db1_A Heterogeneous nuclear r 99.8 5.4E-19 1.9E-23 117.2 10.4 81 50-132 14-97 (118)
92 2cpx_A Hypothetical protein FL 99.8 1.8E-19 6.2E-24 118.6 7.9 88 50-137 22-109 (115)
93 2fc9_A NCL protein; structure 99.8 1E-18 3.5E-23 112.6 11.2 83 50-136 12-94 (101)
94 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.6E-23 109.8 11.5 79 50-136 5-83 (90)
95 2ki2_A SS-DNA binding protein 99.8 4.4E-20 1.5E-24 116.5 4.6 81 54-135 2-82 (90)
96 1x4d_A Matrin 3; structural ge 99.8 5E-19 1.7E-23 114.5 9.6 78 51-134 13-93 (102)
97 1x4c_A Splicing factor, argini 99.8 1.7E-18 5.9E-23 113.0 12.1 80 50-136 12-96 (108)
98 1wg5_A Heterogeneous nuclear r 99.8 8E-19 2.7E-23 113.9 10.4 83 50-134 12-95 (104)
99 2fc8_A NCL protein; structure 99.8 1.7E-18 5.8E-23 111.6 11.8 84 50-136 12-95 (102)
100 1wel_A RNA-binding protein 12; 99.8 2E-19 6.7E-24 120.2 7.6 84 49-133 21-104 (124)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.2E-19 4E-24 111.2 5.9 76 54-130 1-76 (77)
102 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.5E-23 110.9 11.5 80 50-134 16-95 (97)
103 2jvo_A Nucleolar protein 3; nu 99.8 1.1E-18 3.9E-23 114.0 10.5 79 50-136 28-106 (108)
104 2wbr_A GW182, gawky, LD47780P; 99.8 1E-18 3.4E-23 109.3 9.7 73 52-130 6-78 (89)
105 1wex_A Hypothetical protein (r 99.8 1.5E-18 5E-23 112.8 10.8 80 51-136 13-94 (104)
106 2cpy_A RNA-binding protein 12; 99.8 4.6E-19 1.6E-23 116.8 8.3 83 50-134 12-95 (114)
107 2a3j_A U1 small nuclear ribonu 99.8 1.3E-18 4.3E-23 116.9 10.6 82 51-135 27-112 (127)
108 2cpj_A Non-POU domain-containi 99.8 1.8E-18 6E-23 111.1 10.8 80 50-135 12-91 (99)
109 1x4g_A Nucleolysin TIAR; struc 99.8 2.3E-18 7.8E-23 112.5 11.5 81 50-136 22-102 (109)
110 2ytc_A PRE-mRNA-splicing facto 99.8 2.5E-18 8.4E-23 107.3 10.8 76 50-131 9-85 (85)
111 2dgu_A Heterogeneous nuclear r 99.8 4E-18 1.4E-22 110.2 11.9 81 51-139 9-89 (103)
112 2jvr_A Nucleolar protein 3; RN 99.8 1.5E-18 5.2E-23 113.9 9.9 80 50-133 25-105 (111)
113 3q2s_C Cleavage and polyadenyl 99.8 5E-19 1.7E-23 130.0 8.5 82 52-133 67-150 (229)
114 1wez_A HnRNP H', FTP-3, hetero 99.8 9.5E-19 3.2E-23 113.3 8.9 83 50-135 12-94 (102)
115 2dgt_A RNA-binding protein 30; 99.8 5.3E-18 1.8E-22 107.4 12.1 79 50-136 7-85 (92)
116 2hgl_A HNRPF protein, heteroge 99.8 7.1E-19 2.4E-23 119.5 8.3 83 48-132 39-124 (136)
117 3lqv_A PRE-mRNA branch site pr 99.8 1.9E-18 6.5E-23 113.8 10.2 83 50-135 5-87 (115)
118 1fjc_A Nucleolin RBD2, protein 99.8 9.4E-19 3.2E-23 111.6 8.3 81 50-135 13-93 (96)
119 1nu4_A U1A RNA binding domain; 99.8 1E-18 3.5E-23 111.6 8.5 82 50-134 5-90 (97)
120 2dnp_A RNA-binding protein 14; 99.8 4.5E-18 1.5E-22 107.3 11.4 79 50-136 6-84 (90)
121 2xnq_A Nuclear polyadenylated 99.8 4.7E-18 1.6E-22 108.9 11.5 78 49-134 18-96 (97)
122 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.5E-23 112.0 8.6 78 54-136 1-78 (101)
123 2dnn_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 113.1 9.4 78 52-132 15-92 (109)
124 1iqt_A AUF1, heterogeneous nuc 99.8 3E-19 1E-23 108.9 5.2 75 55-130 1-75 (75)
125 2krb_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 109.9 6.0 72 54-127 2-80 (81)
126 2la4_A Nuclear and cytoplasmic 99.8 1.8E-18 6.2E-23 111.4 9.0 77 51-133 25-101 (101)
127 3md3_A Nuclear and cytoplasmic 99.8 1.1E-17 3.6E-22 115.8 13.1 83 50-132 84-166 (166)
128 2cpd_A Apobec-1 stimulating pr 99.8 1.7E-17 5.9E-22 106.4 13.1 79 50-136 12-92 (99)
129 4f02_A Polyadenylate-binding p 99.8 6.3E-18 2.1E-22 122.5 12.3 84 51-134 13-96 (213)
130 2j8a_A Histone-lysine N-methyl 99.8 1.7E-18 5.8E-23 115.3 8.3 83 53-135 2-98 (136)
131 2i2y_A Fusion protein consists 99.8 5.2E-18 1.8E-22 116.7 11.0 80 50-134 70-149 (150)
132 1wf1_A RNA-binding protein RAL 99.8 1.9E-17 6.6E-22 108.2 13.2 76 50-133 24-100 (110)
133 3egn_A RNA-binding protein 40; 99.8 5.5E-19 1.9E-23 120.7 6.0 88 50-138 42-135 (143)
134 2lcw_A RNA-binding protein FUS 99.6 3.7E-20 1.2E-24 122.3 0.0 88 50-137 4-99 (116)
135 2lmi_A GRSF-1, G-rich sequence 99.8 4.3E-19 1.5E-23 115.7 5.0 82 50-133 8-92 (107)
136 1fxl_A Paraneoplastic encephal 99.8 1.3E-17 4.5E-22 115.4 12.4 82 53-134 2-83 (167)
137 1x4f_A Matrin 3; structural ge 99.8 3.4E-18 1.2E-22 112.3 8.6 80 50-135 22-104 (112)
138 2cqh_A IGF-II mRNA-binding pro 99.8 4.5E-18 1.5E-22 107.9 8.9 79 51-136 6-86 (93)
139 2xs2_A Deleted in azoospermia- 99.8 1.4E-18 4.9E-23 112.0 6.6 82 51-135 7-88 (102)
140 1whx_A Hypothetical protein ri 99.8 2.5E-18 8.7E-23 112.8 7.8 77 52-134 9-85 (111)
141 2kvi_A Nuclear polyadenylated 99.8 4.8E-18 1.6E-22 108.6 8.8 79 50-136 7-86 (96)
142 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-17 3.7E-22 133.2 12.8 85 51-135 100-184 (437)
143 2f3j_A RNA and export factor b 99.8 6E-18 2E-22 119.7 10.0 84 50-134 85-168 (177)
144 1b7f_A Protein (SXL-lethal pro 99.8 1.1E-17 3.8E-22 116.1 11.3 84 52-135 2-85 (168)
145 2e44_A Insulin-like growth fac 99.8 9E-18 3.1E-22 107.1 9.9 80 51-134 13-93 (96)
146 2e5g_A U6 snRNA-specific termi 99.7 1.4E-17 4.6E-22 106.0 10.0 80 51-136 6-85 (94)
147 2yh0_A Splicing factor U2AF 65 99.7 2.7E-17 9.3E-22 117.0 12.6 86 50-135 111-196 (198)
148 2g4b_A Splicing factor U2AF 65 99.7 2.2E-17 7.6E-22 115.1 11.7 80 51-130 92-171 (172)
149 2qfj_A FBP-interacting repress 99.7 2.5E-17 8.7E-22 118.7 12.1 85 51-135 123-207 (216)
150 1x5p_A Negative elongation fac 99.7 6.9E-17 2.4E-21 103.2 12.8 79 50-136 12-90 (97)
151 2hgm_A HNRPF protein, heteroge 99.7 5.2E-18 1.8E-22 113.7 7.5 80 50-132 39-120 (126)
152 2cq2_A Hypothetical protein LO 99.7 1.8E-17 6E-22 109.0 9.1 79 50-134 22-107 (114)
153 1l3k_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 116.5 11.1 84 50-134 10-93 (196)
154 2dha_A FLJ20171 protein; RRM d 99.7 5.5E-18 1.9E-22 113.2 6.6 81 50-132 20-104 (123)
155 2cjk_A Nuclear polyadenylated 99.7 8.7E-18 3E-22 116.6 7.9 82 52-134 86-167 (167)
156 2hgn_A Heterogeneous nuclear r 99.7 1.9E-18 6.3E-23 117.8 4.1 85 50-137 43-127 (139)
157 4f02_A Polyadenylate-binding p 99.7 3E-17 1E-21 118.9 10.8 82 52-135 102-183 (213)
158 3zzy_A Polypyrimidine tract-bi 99.7 7.2E-17 2.5E-21 108.4 11.8 79 52-135 27-108 (130)
159 1l3k_A Heterogeneous nuclear r 99.7 4.5E-17 1.5E-21 115.7 11.1 87 51-138 102-188 (196)
160 1wg1_A KIAA1579 protein, homol 99.7 3E-17 1E-21 103.2 8.9 76 52-134 4-79 (88)
161 1sjr_A Polypyrimidine tract-bi 99.7 8.7E-17 3E-21 111.9 11.3 81 51-135 44-126 (164)
162 3d2w_A TAR DNA-binding protein 99.7 6.4E-17 2.2E-21 102.1 9.7 77 50-135 8-86 (89)
163 3beg_B Splicing factor, argini 99.7 2.4E-17 8.1E-22 108.8 7.7 78 51-135 14-96 (115)
164 3md3_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 111.4 10.3 80 54-134 1-80 (166)
165 3tyt_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 115.6 11.3 78 52-134 3-81 (205)
166 2qfj_A FBP-interacting repress 99.7 3.2E-17 1.1E-21 118.1 8.5 83 52-134 27-109 (216)
167 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-16 5.8E-21 110.0 11.8 81 50-130 86-168 (168)
168 2dnl_A Cytoplasmic polyadenyla 99.7 4E-17 1.4E-21 107.4 7.7 79 51-132 6-87 (114)
169 2e5i_A Heterogeneous nuclear r 99.7 3.8E-16 1.3E-20 104.3 11.9 76 54-135 26-104 (124)
170 2hzc_A Splicing factor U2AF 65 99.7 1.2E-16 4.1E-21 99.9 8.6 71 51-128 4-85 (87)
171 1fxl_A Paraneoplastic encephal 99.7 2.7E-16 9.4E-21 108.7 11.1 80 51-130 86-167 (167)
172 2diu_A KIAA0430 protein; struc 99.7 1.9E-16 6.4E-21 100.0 9.3 73 53-135 8-86 (96)
173 2pe8_A Splicing factor 45; RRM 99.7 7.7E-16 2.6E-20 100.0 11.4 82 51-132 6-93 (105)
174 3nmr_A Cugbp ELAV-like family 99.7 3.9E-16 1.3E-20 108.8 10.6 80 51-131 93-175 (175)
175 1fje_B Nucleolin RBD12, protei 99.7 3E-16 1E-20 109.7 10.1 80 50-134 96-175 (175)
176 2bz2_A Negative elongation fac 99.7 2.6E-16 8.8E-21 104.8 9.2 79 50-136 36-114 (121)
177 3nmr_A Cugbp ELAV-like family 99.7 3.7E-16 1.3E-20 108.9 10.4 83 52-134 2-89 (175)
178 2cjk_A Nuclear polyadenylated 99.7 2.6E-16 8.9E-21 109.1 8.4 80 52-133 2-81 (167)
179 1wf0_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.6E-21 100.6 5.8 79 51-136 3-81 (88)
180 3pgw_A U1-A; protein-RNA compl 99.7 9E-16 3.1E-20 115.1 11.9 82 50-134 6-91 (282)
181 2voo_A Lupus LA protein; RNA-b 99.7 8.5E-16 2.9E-20 110.0 10.8 79 53-133 109-187 (193)
182 2ghp_A U4/U6 snRNA-associated 99.6 5.2E-16 1.8E-20 116.9 9.6 83 50-133 207-291 (292)
183 3smz_A Protein raver-1, ribonu 99.6 1.8E-15 6.1E-20 113.6 12.2 85 51-135 93-177 (284)
184 3u1l_A PRE-mRNA-splicing facto 99.6 7E-16 2.4E-20 113.6 9.1 80 50-135 131-231 (240)
185 3smz_A Protein raver-1, ribonu 99.6 2E-15 6.8E-20 113.3 11.3 86 50-136 181-267 (284)
186 2adc_A Polypyrimidine tract-bi 99.6 1.7E-15 5.7E-20 110.8 10.2 79 50-133 31-110 (229)
187 3pgw_A U1-A; protein-RNA compl 99.6 5.1E-15 1.8E-19 111.0 11.7 77 50-131 204-281 (282)
188 2dit_A HIV TAT specific factor 99.6 1.5E-14 5.1E-19 94.8 11.8 81 50-134 12-103 (112)
189 1fje_B Nucleolin RBD12, protei 99.6 4.9E-16 1.7E-20 108.6 4.8 84 50-135 10-93 (175)
190 3sde_A Paraspeckle component 1 99.6 8.1E-15 2.8E-19 109.2 11.1 78 50-133 19-96 (261)
191 1qm9_A Polypyrimidine tract-bi 99.6 2.3E-15 7.9E-20 107.3 7.7 76 53-133 3-79 (198)
192 1qm9_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 105.3 8.7 78 51-133 118-197 (198)
193 2ghp_A U4/U6 snRNA-associated 99.6 8.5E-15 2.9E-19 110.3 9.8 84 52-136 116-200 (292)
194 2adc_A Polypyrimidine tract-bi 99.6 1.2E-14 4.2E-19 106.2 10.2 78 51-133 149-228 (229)
195 3tyt_A Heterogeneous nuclear r 99.6 6.7E-15 2.3E-19 106.2 8.4 78 51-130 121-204 (205)
196 3sde_A Paraspeckle component 1 99.6 3.1E-14 1.1E-18 106.0 11.3 82 52-134 95-180 (261)
197 3v4m_A Splicing factor U2AF 65 99.6 2.3E-14 7.9E-19 93.0 9.2 81 52-132 4-96 (105)
198 1jmt_A Splicing factor U2AF 35 99.6 3.4E-15 1.2E-19 96.8 4.9 73 58-131 20-104 (104)
199 2g4b_A Splicing factor U2AF 65 99.5 3.8E-14 1.3E-18 98.5 9.6 75 52-133 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.5 6.1E-14 2.1E-18 92.8 9.8 81 52-132 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 99.6 9.9 75 52-133 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.4E-13 2.2E-17 85.4 11.0 67 63-136 27-93 (100)
203 3tht_A Alkylated DNA repair pr 99.4 2.9E-13 1E-17 104.4 9.1 76 50-131 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 4E-12 1.4E-16 83.5 9.8 77 52-132 6-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.2 4.1E-11 1.4E-15 74.9 8.3 74 51-133 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 5.8E-11 2E-15 78.5 7.8 77 50-132 15-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 4.7E-10 1.6E-14 70.4 7.3 74 50-132 12-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 6.2E-10 2.1E-14 80.7 8.7 68 65-132 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.8 1E-07 3.4E-12 61.2 9.8 74 51-130 19-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 5.7E-05 1.9E-09 47.9 10.0 86 51-145 6-96 (104)
211 1whv_A Poly(A)-specific ribonu 98.0 2.7E-05 9.3E-10 48.9 7.5 58 50-116 13-70 (100)
212 1wey_A Calcipressin 1; structu 98.0 3.5E-05 1.2E-09 49.0 7.9 79 51-135 3-86 (104)
213 3ctr_A Poly(A)-specific ribonu 97.8 5.7E-05 2E-09 47.5 5.5 56 52-116 5-60 (101)
214 1uw4_A UPF3X; nonsense mediate 97.6 0.0007 2.4E-08 42.1 8.5 68 54-121 2-71 (91)
215 1wwh_A Nucleoporin 35, nucleop 97.1 0.0026 8.8E-08 41.4 7.7 73 50-130 21-94 (119)
216 2l08_A Regulator of nonsense t 96.7 0.0037 1.3E-07 39.2 5.5 69 53-121 9-79 (97)
217 3p3d_A Nucleoporin 53; structu 96.5 0.0036 1.2E-07 41.3 4.5 79 52-132 6-98 (132)
218 3pq1_A Poly(A) RNA polymerase; 96.3 0.0024 8.1E-08 51.0 3.3 55 53-113 53-107 (464)
219 2kn4_A Immunoglobulin G-bindin 96.2 0.0064 2.2E-07 41.0 4.5 35 82-118 2-36 (158)
220 2i2y_A Fusion protein consists 96.0 0.0051 1.8E-07 41.2 3.3 41 91-132 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 94.7 0.14 4.7E-06 41.4 8.2 57 51-116 438-494 (507)
222 2g0c_A ATP-dependent RNA helic 74.1 10 0.00034 21.7 5.6 68 55-131 2-75 (76)
223 2cu1_A Mitogen-activated prote 27.8 1.1E+02 0.0038 18.9 5.4 65 60-134 23-89 (103)
224 3fut_A Dimethyladenosine trans 26.4 74 0.0025 23.0 4.0 34 54-88 111-144 (271)
225 3uzu_A Ribosomal RNA small sub 23.0 41 0.0014 24.6 2.0 35 54-88 115-149 (279)
226 4e8u_A Putative uncharacterize 22.3 1.9E+02 0.0065 19.6 7.5 55 55-112 14-80 (172)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=5e-23 Score=132.85 Aligned_cols=83 Identities=23% Similarity=0.490 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|++|.|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=132.02 Aligned_cols=88 Identities=13% Similarity=0.176 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.+..+|||+||++.+++++|+++|.+||.|.++.++.++.|++++|||||+|.+.++|++|+..|||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCc
Q 031599 131 PPEHVHPK 138 (156)
Q Consensus 131 ~~~~~~~~ 138 (156)
.....+.+
T Consensus 84 ~~~~~~~~ 91 (110)
T 3s8s_A 84 IKGQQRMK 91 (110)
T ss_dssp STTHHHHH
T ss_pred CCCcHHHH
Confidence 76544433
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=8.5e-23 Score=129.81 Aligned_cols=88 Identities=20% Similarity=0.391 Sum_probs=80.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC-CCeeCCeEEEEEec
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH-GYLLFEHILQVHLI 130 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~-g~~i~g~~i~v~~a 130 (156)
+.+|||+|||+.+++++|+++|.+|| .|.++.++.++.++.++|||||+|.+.++|++|++.++ +..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35899999999999999999999999 89999999999999999999999999999999998775 55799999999999
Q ss_pred CCCCCCCccc
Q 031599 131 PPEHVHPKLL 140 (156)
Q Consensus 131 ~~~~~~~~~~ 140 (156)
.+++....-|
T Consensus 81 ~~~~~~~~DW 90 (91)
T 2lxi_A 81 DPKPKINEDW 90 (91)
T ss_dssp CSCCCCSCSC
T ss_pred CCCCCCCCCC
Confidence 9887665544
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=4.1e-21 Score=119.44 Aligned_cols=81 Identities=20% Similarity=0.362 Sum_probs=78.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
.+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|++|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999876
Q ss_pred C
Q 031599 134 H 134 (156)
Q Consensus 134 ~ 134 (156)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.9e-21 Score=122.08 Aligned_cols=85 Identities=21% Similarity=0.429 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4566789999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988654
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=3.8e-21 Score=120.64 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=2e-20 Score=123.35 Aligned_cols=89 Identities=24% Similarity=0.412 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc
Q 031599 130 IPPEHVHPK 138 (156)
Q Consensus 130 a~~~~~~~~ 138 (156)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 987765543
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.6e-21 Score=122.55 Aligned_cols=87 Identities=29% Similarity=0.479 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876554
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9e-21 Score=121.85 Aligned_cols=87 Identities=23% Similarity=0.508 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. ||+..++|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4566899999999999999999999999999999999998899999999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876543
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=122.73 Aligned_cols=87 Identities=22% Similarity=0.396 Sum_probs=81.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9876554
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.4e-20 Score=124.19 Aligned_cols=87 Identities=24% Similarity=0.479 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9876554
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=121.47 Aligned_cols=87 Identities=20% Similarity=0.314 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
..+.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987654
No 13
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=123.59 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9865443
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=8.6e-21 Score=118.49 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
..+.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=124.04 Aligned_cols=83 Identities=12% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGA--IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY----LLFEH 123 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~--i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~----~i~g~ 123 (156)
...-.+|||+|||+.+|+++|+++|++||. +.+|.+++++.++.++|||||+|.+.++|++|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345568999999999999999999999995 678999999999999999999999999999999999996 58999
Q ss_pred EEEEEecCC
Q 031599 124 ILQVHLIPP 132 (156)
Q Consensus 124 ~i~v~~a~~ 132 (156)
+|.|++|++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=9.3e-21 Score=125.21 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+|||+.+++++|+++|..||.|.+|.++.+. +.++|||||+|.+.++|++|+..|||..++|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999984 4579999999999999999999999999999999999998
Q ss_pred CCCCC
Q 031599 132 PEHVH 136 (156)
Q Consensus 132 ~~~~~ 136 (156)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 76543
No 17
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=120.12 Aligned_cols=86 Identities=26% Similarity=0.512 Sum_probs=81.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 031599 131 PPEHVH 136 (156)
Q Consensus 131 ~~~~~~ 136 (156)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=119.56 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45667899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 865
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=119.28 Aligned_cols=82 Identities=22% Similarity=0.481 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45667899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=1.5e-20 Score=120.26 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=79.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999988
Q ss_pred CCC
Q 031599 133 EHV 135 (156)
Q Consensus 133 ~~~ 135 (156)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.2e-21 Score=122.36 Aligned_cols=88 Identities=28% Similarity=0.492 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34667899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98876543
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-20 Score=122.00 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC------CCeeCCe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH------GYLLFEH 123 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~------g~~i~g~ 123 (156)
.....+|||+|||+.+++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|+.|+..|| +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4556789999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEecCCCCCCC
Q 031599 124 ILQVHLIPPEHVHP 137 (156)
Q Consensus 124 ~i~v~~a~~~~~~~ 137 (156)
.|.|.++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998875543
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=121.61 Aligned_cols=87 Identities=21% Similarity=0.408 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
..+..+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.4e-20 Score=122.30 Aligned_cols=87 Identities=28% Similarity=0.458 Sum_probs=81.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee---CCeEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL---FEHILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i---~g~~i~ 126 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999987 899999
Q ss_pred EEecCCCCCC
Q 031599 127 VHLIPPEHVH 136 (156)
Q Consensus 127 v~~a~~~~~~ 136 (156)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999876654
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=121.15 Aligned_cols=87 Identities=24% Similarity=0.475 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN-KKTGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~-~~~~~~kg~~fv~f~~~~~a~~al~~l-~g~~i~g~~i~v 127 (156)
.....+|||+|||+.+++++|+++|..||.|..|.++.+ +.++.++|||||+|.+.++|+.|+..| |+..++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999998 779999999999999999999999999 999999999999
Q ss_pred EecCCCCCC
Q 031599 128 HLIPPEHVH 136 (156)
Q Consensus 128 ~~a~~~~~~ 136 (156)
.++.++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876544
No 26
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=119.87 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
.....++|||+|||..+++++|+++|..||.|.. +.++.++.++.++|||||+|.+.++|+.|+..|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3566789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeEEEEEecC
Q 031599 121 FEHILQVHLIP 131 (156)
Q Consensus 121 ~g~~i~v~~a~ 131 (156)
+|+.|.|.++.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=120.62 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.+.++|||+|||+.+++++|+++|..||.|..+ .++.++.++.++|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876654
No 28
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=121.51 Aligned_cols=84 Identities=17% Similarity=0.358 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 031599 131 PPEH 134 (156)
Q Consensus 131 ~~~~ 134 (156)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=120.33 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.+ ++..+|||||+|.+.++|+.|+..||+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456789999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876554
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=5.1e-20 Score=119.43 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC---eEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE---HILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g---~~i~ 126 (156)
....++|||+|||..+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999997 89999999999999999999999999999988 9999
Q ss_pred EEecCCCCCC
Q 031599 127 VHLIPPEHVH 136 (156)
Q Consensus 127 v~~a~~~~~~ 136 (156)
|.++.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876554
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.4e-21 Score=122.63 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
.+|||+|||+.+++++|+++|..|| .|.++.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3699999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-20 Score=120.75 Aligned_cols=85 Identities=26% Similarity=0.530 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|++|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98753
No 33
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.4e-20 Score=122.02 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987543
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=119.65 Aligned_cols=86 Identities=27% Similarity=0.423 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKK---TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~---~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.+.++|||+|||+.+++++|+++|..||.|..+.++.++. ++.++|||||+|.+.++|+.|+..||+..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 031599 128 HLIPPEHVH 136 (156)
Q Consensus 128 ~~a~~~~~~ 136 (156)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 35
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.8e-20 Score=121.74 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..+++ .++|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976533
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.2e-20 Score=119.12 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..|| |..+.++.++.++.++|||||+|.+.++|+.|+ .||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 999999999889999999999999999999999 8999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876554
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=6.6e-20 Score=121.35 Aligned_cols=83 Identities=29% Similarity=0.529 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|++|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q 031599 129 LIP 131 (156)
Q Consensus 129 ~a~ 131 (156)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 38
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=121.88 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=81.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--------RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
....++|||+|||+.+++++|+++|..||.|. .+.++.++.++.++|||||+|.+.++|+.|+..||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCC
Q 031599 122 EHILQVHLIPPEHVH 136 (156)
Q Consensus 122 g~~i~v~~a~~~~~~ 136 (156)
|+.|.|.++.++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876554
No 39
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=116.95 Aligned_cols=83 Identities=23% Similarity=0.412 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ-SKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~-~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.+++|||+|||..+++++|+++|..||.|..+.++.++.++. ++|||||+|.+.++|+.|+..|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999999876666 8999999999999999999999999999999999999
Q ss_pred CCCC
Q 031599 131 PPEH 134 (156)
Q Consensus 131 ~~~~ 134 (156)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=6e-20 Score=124.84 Aligned_cols=90 Identities=23% Similarity=0.487 Sum_probs=83.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCc
Q 031599 129 LIPPEHVHPK 138 (156)
Q Consensus 129 ~a~~~~~~~~ 138 (156)
++.+...+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998766543
No 41
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-20 Score=119.88 Aligned_cols=86 Identities=19% Similarity=0.356 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT-GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....+|||+|||+.+++++|+++|..|| |..+.++.++.+ +.++|||||+|.+.++|++|+ .||+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35668999999999999999999999999 999999999877 899999999999999999999 999999999999999
Q ss_pred ecCCCCCCC
Q 031599 129 LIPPEHVHP 137 (156)
Q Consensus 129 ~a~~~~~~~ 137 (156)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998876543
No 42
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=4.1e-21 Score=123.96 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-e
Q 031599 51 NKATVLYIGRIPH------GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-H 123 (156)
Q Consensus 51 ~~~~~l~V~~l~~------~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g-~ 123 (156)
...++|||+|||. .+++++|+++|++||.|.++.++.++.|+.++|||||+|.+.++|++|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457899999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred EEEEEecCCC
Q 031599 124 ILQVHLIPPE 133 (156)
Q Consensus 124 ~i~v~~a~~~ 133 (156)
.|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999763
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=118.98 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE----
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK-RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI---- 124 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~---- 124 (156)
.....+|||+|||+.+++++|+++|..||.|. .+.++.++.++.++|||||+|.+.++|+.|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34668999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 031599 125 LQVHLIPPEHV 135 (156)
Q Consensus 125 i~v~~a~~~~~ 135 (156)
|.|.++.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987543
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=116.82 Aligned_cols=86 Identities=24% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++|||+|||+.+++++|+++|..||.|..+.++.+.. .++|||||+|.+.++|+.|+..||+..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356678999999999999999999999999999999998853 389999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99876554
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=122.29 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.+. ++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3566799999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986654
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.7e-20 Score=117.00 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
....+|||+|||+.+++++|+ ++|.+||.|.++.++.++.+ +|||||+|.+.++|+.|+..|||..++|++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456789999999999999999 99999999999999988654 88999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 031599 127 VHLIPPEHVH 136 (156)
Q Consensus 127 v~~a~~~~~~ 136 (156)
|.++.+....
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999876554
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=119.87 Aligned_cols=87 Identities=24% Similarity=0.487 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..|.++.++.++.++|||||+|.+.++|+.|+.. |+..++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999988 99999999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 98776543
No 48
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.8e-20 Score=125.40 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
...+..+|||+|||+.+++++|+++|..||.|..+.++.++.++..+|||||+|.+.++|++|+..|||..|+|++|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998754
No 49
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=128.35 Aligned_cols=84 Identities=17% Similarity=0.323 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
....+|||+|||+.+++++|+++|..|| .|.++.++.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3567999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
++.+++
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 997643
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1e-19 Score=118.41 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|++|+..||+..++|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cC
Q 031599 130 IP 131 (156)
Q Consensus 130 a~ 131 (156)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=6.3e-20 Score=115.47 Aligned_cols=80 Identities=28% Similarity=0.463 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+ .||+..++|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999889999999999999999999999 9999999999999999976
Q ss_pred C
Q 031599 133 E 133 (156)
Q Consensus 133 ~ 133 (156)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=119.91 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQ-FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL-LFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~-i~g~~i~v 127 (156)
.....+|||+|||+.+++++|+++|.. ||.|..+.++.++ ++.++|||||+|.+.++|..|+..||+.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345678999999999999999999999 9999999999997 99999999999999999999999999999 99999999
Q ss_pred EecCCCCCCCc
Q 031599 128 HLIPPEHVHPK 138 (156)
Q Consensus 128 ~~a~~~~~~~~ 138 (156)
.++.++.....
T Consensus 85 ~~a~~~~~~~~ 95 (104)
T 2dhg_A 85 SVAIPKASRVK 95 (104)
T ss_dssp CBCCCCCSCCC
T ss_pred EEccCCCcCCC
Confidence 99987665443
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-19 Score=116.23 Aligned_cols=85 Identities=20% Similarity=0.369 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..|.++.++.+ .+|||||+|.+.++|+.|+..||+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 456789999999999999999999999999999999988533 689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876543
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=116.59 Aligned_cols=82 Identities=21% Similarity=0.458 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4556799999999999999999999999999999999996 489999999999999999999999999999999999999
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=1.1e-19 Score=114.01 Aligned_cols=80 Identities=25% Similarity=0.462 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999995 588899999999987
Q ss_pred c
Q 031599 130 I 130 (156)
Q Consensus 130 a 130 (156)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 56
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=5.5e-20 Score=120.40 Aligned_cols=87 Identities=22% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456679999999999999999999999999999999999889999999999999999999999875 5889999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.++...+
T Consensus 101 a~~~~~~~ 108 (109)
T 2rs2_A 101 AFPRRAQP 108 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98876543
No 57
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=1.9e-19 Score=124.74 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|+.|+..||+..|+|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9876543
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=117.46 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+....
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 59
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-19 Score=116.90 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456789999999999999999999999999999999996 699999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9754433
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.4e-19 Score=114.67 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.+ ++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356679999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 83 a~~~~~~ 89 (92)
T 2dgv_A 83 DRNASGP 89 (92)
T ss_dssp CSCCSSC
T ss_pred cCCCCCC
Confidence 9876543
No 61
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=118.95 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQ 126 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~ 126 (156)
...+..+|||+|||+.+++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|+..|++ ..++|++|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999999875 79999999999999999998874 789999999
Q ss_pred EEecCCCCCCCcc
Q 031599 127 VHLIPPEHVHPKL 139 (156)
Q Consensus 127 v~~a~~~~~~~~~ 139 (156)
|.++.++......
T Consensus 86 V~~A~~~~~~~~~ 98 (105)
T 1sjq_A 86 IQFSNHKELKTDS 98 (105)
T ss_dssp BCCCSSSSCCCTT
T ss_pred EEEcCCCCCCccc
Confidence 9999987666543
No 62
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-19 Score=115.13 Aligned_cols=85 Identities=25% Similarity=0.441 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4566789999999999999999999999999999999998899999999999999999999997 57889999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9886554
No 63
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=6.8e-20 Score=122.60 Aligned_cols=87 Identities=16% Similarity=0.331 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9765443
No 64
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=113.26 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..| .|..+.++.+ .++.++|||||+|.+.++|+.|+. ||+..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4566899999999999999999999999 9999999999 799999999999999999999999 999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1e-18 Score=116.63 Aligned_cols=86 Identities=17% Similarity=0.332 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||..+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4566899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9875443
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=118.95 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+++++++|+++|++||.|.+|.++.++. +.++|||||+|.+.++|+.|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999975 9999999999999999999998 899999999999998
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=118.61 Aligned_cols=85 Identities=25% Similarity=0.479 Sum_probs=80.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 031599 132 PEHVH 136 (156)
Q Consensus 132 ~~~~~ 136 (156)
+....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 68
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-19 Score=115.25 Aligned_cols=84 Identities=25% Similarity=0.439 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.+ +.++|||||+|.+.++|+.|++.||+..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456689999999999999999999999999999998544 55799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876554
No 69
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.9e-19 Score=124.73 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876443
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=125.19 Aligned_cols=86 Identities=10% Similarity=0.219 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC----eeCCe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY----LLFEH 123 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~----~i~g~ 123 (156)
.....+|||+|||+.+++++|+++|..||.|.. |.++.++.++.++|||||+|.+. +|..|+..|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355679999999999999999999999999977 99999988999999999999999 999999999999 99999
Q ss_pred EEEEEecCCCCCC
Q 031599 124 ILQVHLIPPEHVH 136 (156)
Q Consensus 124 ~i~v~~a~~~~~~ 136 (156)
.|.|.++.+....
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876443
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=119.96 Aligned_cols=82 Identities=18% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+ .||+..++|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34579999999999999999999999999999999999888999999999999999999999 99999999999999998
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 72
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=120.20 Aligned_cols=86 Identities=15% Similarity=0.322 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+.. ++..++|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4457999999999999999999999999999999999988999999999999999999999987 999999999999999
Q ss_pred CCCCCCC
Q 031599 131 PPEHVHP 137 (156)
Q Consensus 131 ~~~~~~~ 137 (156)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 8876543
No 73
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=121.03 Aligned_cols=82 Identities=29% Similarity=0.483 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
......+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ec
Q 031599 129 LI 130 (156)
Q Consensus 129 ~a 130 (156)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=5.5e-20 Score=117.17 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.+...+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..||+..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=2.2e-19 Score=125.64 Aligned_cols=87 Identities=22% Similarity=0.384 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+.+|..||.|..|.++.++.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9865543
No 76
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-19 Score=115.88 Aligned_cols=83 Identities=27% Similarity=0.480 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee--------C
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL--------F 121 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i--------~ 121 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEEecCCC
Q 031599 122 EHILQVHLIPPE 133 (156)
Q Consensus 122 g~~i~v~~a~~~ 133 (156)
+++|.|.++.|.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999864
No 77
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.2e-19 Score=121.11 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+ .|||..++|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4579999999999999999999999999999999999889999999999999999999999 899999999999999998
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=117.35 Aligned_cols=83 Identities=25% Similarity=0.463 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....++|||+|||..+++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|++|+..|||..++|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999884 4589999999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=5e-20 Score=112.48 Aligned_cols=75 Identities=19% Similarity=0.464 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +|+..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 9999999999999875
No 80
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=4.2e-19 Score=114.20 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~--i~g~~i~v 127 (156)
..+..+|||+|||+.+++++|+++|.+||.|..+.++++ +|||||+|.+.++|..|+..|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456679999999999999999999999999999998754 7899999999999999999999875 78999999
Q ss_pred EecCCCC
Q 031599 128 HLIPPEH 134 (156)
Q Consensus 128 ~~a~~~~ 134 (156)
.++.++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 81
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=120.21 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|.. .++.+..++.++|||||+|.+.++|++|++ ||+..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345679999999999999999999999999887 566666688999999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 82
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=118.37 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~v 127 (156)
..+..+|||+|||+.+++++|+++|.+||.|.++.++.+ +|||||+|.+.++|.+|+..|++ ..+.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456679999999999999999999999999999999876 79999999999999999998884 6899999999
Q ss_pred EecCCCCCCCc
Q 031599 128 HLIPPEHVHPK 138 (156)
Q Consensus 128 ~~a~~~~~~~~ 138 (156)
.++.++..+..
T Consensus 102 ~~a~~k~~~~~ 112 (119)
T 2ad9_A 102 QFSNHKELKTD 112 (119)
T ss_dssp EECSSSSCCCC
T ss_pred EEccCCCCCcc
Confidence 99998776654
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=6.8e-20 Score=124.38 Aligned_cols=88 Identities=25% Similarity=0.359 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
......+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..++|++|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.+....
T Consensus 123 ~a~~~~~~ 130 (135)
T 2lea_A 123 MARYGRPP 130 (135)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99875443
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=118.88 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNK-KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~-~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
....++|||+|||..+++++|+++|..|| |.++.++.++ .++.++|||||+|.+.++|..|+ .|||..++|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 9999999987 58999999999999999999999 899999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
++.+++
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 85
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=116.97 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIA-RNKKTGQSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQ 126 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~kg~~fv~f~~~~~a~~al~~l~--g~~i~g~~i~ 126 (156)
.+.++|||+|||+.+++++|+++|..||. |..+.++ .+..++.++|||||+|.+.++|..|+..|| +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45679999999999999999999999998 9999998 787888999999999999999999999996 5899999999
Q ss_pred EEecCCCCCC
Q 031599 127 VHLIPPEHVH 136 (156)
Q Consensus 127 v~~a~~~~~~ 136 (156)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887553
No 86
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-19 Score=112.41 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC--CeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF--EHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~--g~~i~v 127 (156)
..+..+|||+|||+.+++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.|+..||+..+. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345678999999999999999999999999999988754 789999999999999999999999999 999999
Q ss_pred EecCCCCC
Q 031599 128 HLIPPEHV 135 (156)
Q Consensus 128 ~~a~~~~~ 135 (156)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988654
No 87
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-20 Score=116.27 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.+..+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999998877665
Q ss_pred C
Q 031599 131 P 131 (156)
Q Consensus 131 ~ 131 (156)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-19 Score=113.16 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC--CCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH--GYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~--g~~i~g~~i~v 127 (156)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|+..|+ +..+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 456679999999999999999999999999999988765 7999999999999999999774 67899999999
Q ss_pred EecCCCCCCC
Q 031599 128 HLIPPEHVHP 137 (156)
Q Consensus 128 ~~a~~~~~~~ 137 (156)
.++.++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9998776553
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=117.59 Aligned_cols=85 Identities=12% Similarity=0.253 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQ---AFFSQFGAIKRLRIARNKKTG---QSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~---~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
....+|||+|||+.+++++|. ++|.+||.|..+.++.+..++ .++|||||+|.+.++|++|+..|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345689999999999999999 999999999999999886644 56699999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 031599 125 LQVHLIPPEHV 135 (156)
Q Consensus 125 i~v~~a~~~~~ 135 (156)
|.|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998764
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=115.30 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-
Q 031599 51 NKATVLYIGRIPHGF------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH- 123 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~- 123 (156)
...++|||+|||+.+ ++++|+++|.+||.|..+.++ +.+|.++|||||+|.+.++|+.|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 446799999999999 789999999999999999988 35889999999999999999999999999999998
Q ss_pred EEEEEecCCC
Q 031599 124 ILQVHLIPPE 133 (156)
Q Consensus 124 ~i~v~~a~~~ 133 (156)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=5.4e-19 Score=117.23 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
.....+|||+|||+.+++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|++|+. +|+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999999 89999999975 9999999999999999999998 999999999999
Q ss_pred EEecCC
Q 031599 127 VHLIPP 132 (156)
Q Consensus 127 v~~a~~ 132 (156)
|.++.+
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 92
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=118.64 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34668999999999999999999999999984332222223788899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98775543
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=112.55 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.| .++.+ .++..+|||||+|.+.++|+.|+..||+..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567899999999999999999999999986 56666 5889999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9876543
No 94
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=109.79 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999886 57999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 95
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.4e-20 Score=116.54 Aligned_cols=81 Identities=19% Similarity=0.426 Sum_probs=73.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.+ |..|+..|||..++|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999889999999999999999 99999999999999999999999875
Q ss_pred CC
Q 031599 134 HV 135 (156)
Q Consensus 134 ~~ 135 (156)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 96
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=114.52 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCeEEEE
Q 031599 51 NKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY--LLFEHILQV 127 (156)
Q Consensus 51 ~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~--~i~g~~i~v 127 (156)
.+..+|||+|||+ .+++++|+++|.+||.|.++.++.+ +|||||+|.+.++|..|+..||+. .+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4567999999999 9999999999999999999999876 589999999999999999999864 599999999
Q ss_pred EecCCCC
Q 031599 128 HLIPPEH 134 (156)
Q Consensus 128 ~~a~~~~ 134 (156)
.++.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998643
No 97
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=112.95 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-----eE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-----HI 124 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g-----~~ 124 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++.+ |||||+|.+.++|+.|+..||+..++| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345679999999999999999999999999999999766 799999999999999999999999999 99
Q ss_pred EEEEecCCCCCC
Q 031599 125 LQVHLIPPEHVH 136 (156)
Q Consensus 125 i~v~~a~~~~~~ 136 (156)
|.|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999986554
No 98
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=113.86 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR-LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~-~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....+|||+|||+.+++++|+++|..||.|.. +.|+.+ .+++++|||||+|.+.++|+.|+.. |+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456689999999999999999999999999987 888888 6999999999999999999999987 9999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
.+.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=111.64 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|+.|+..||+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45668899999999999999999999773 677888888999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 100
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=120.22 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 49 LVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
......+|||+|||+.+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|+.|+. ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999886565655799999999999999999999998 99999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=111.24 Aligned_cols=76 Identities=22% Similarity=0.412 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|+..++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999998899999999999999999999999988 9999999999986
No 102
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=110.93 Aligned_cols=80 Identities=19% Similarity=0.400 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|. +.++.+ .++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45567999999999999999999999999996 555543 5689999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 103
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=1.1e-18 Score=113.99 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++ +|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999887 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+...+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9886554
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1e-18 Score=109.30 Aligned_cols=73 Identities=10% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...-|||+||++.+++++|+++|.+||+|..++++. ++|||||+|.+.++|..|++.||+..+.|+.|.|.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 355799999999999999999999999999999876 3899999999999999999999999999999999998
No 105
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=112.77 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC--eeCCeEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY--LLFEHILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~--~i~g~~i~v~ 128 (156)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|..|+..|++. .+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45679999999999999999999999999999988764 799999999999999999988764 5899999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.++...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99876554
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=116.83 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAI-KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....+|||+|||+.+++++|+++|..||.| ..+.|+.++ ++.++|||||+|.+.++|+.|+.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4566899999999999999999999999999 889999997 999999999999999999999976 9999999999999
Q ss_pred ecCCCC
Q 031599 129 LIPPEH 134 (156)
Q Consensus 129 ~a~~~~ 134 (156)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997643
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=116.92 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
.+..+|||+|||+.+++++|+ ++|++||.|.+|.+. .++.++|||||+|.+.++|..|+..|||..+.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346789999999999999876 689999999998774 3678899999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 031599 127 VHLIPPEHV 135 (156)
Q Consensus 127 v~~a~~~~~ 135 (156)
|.++.++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987543
No 108
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=111.09 Aligned_cols=80 Identities=24% Similarity=0.462 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345679999999999999999999999999999999855 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987544
No 109
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=112.46 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||..+++++|+++|..||.|..+.++.+ +|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876554
No 110
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=107.26 Aligned_cols=76 Identities=25% Similarity=0.451 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l-~g~~i~g~~i~v~ 128 (156)
.....+|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|+.|+..| ++..++|++|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345678999999999999999999999999999999875 799999999999999999988 9999999999999
Q ss_pred ecC
Q 031599 129 LIP 131 (156)
Q Consensus 129 ~a~ 131 (156)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 111
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=4e-18 Score=110.23 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+.++|+.|+..||+..++|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 455789999999999999999999999999999886 459999999999999999999999999999999999
Q ss_pred CCCCCCCcc
Q 031599 131 PPEHVHPKL 139 (156)
Q Consensus 131 ~~~~~~~~~ 139 (156)
.++......
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 877665443
No 112
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=1.5e-18 Score=113.94 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....+|||+|||+++++++|+++|..|| .|..+.++. ..++|||||+|.+.++|+.|+..|||..++|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 899998853 2468999999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99754
No 113
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=5e-19 Score=130.01 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFG--AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
...+|||+||++.+++++|+++|..|| .|.+|.|+.++.+++++|||||+|.+.++|++||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 031599 130 IPPE 133 (156)
Q Consensus 130 a~~~ 133 (156)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.5e-19 Score=113.25 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||. ..+.|+.++ +++++|||||+|.+.++|++|+ .+|+..++|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 345679999999999999999999999995 499999997 8999999999999999999999 5799999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-18 Score=107.43 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+.++|+.|+..||+..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9876554
No 116
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=7.1e-19 Score=119.46 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 48 PLVNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 48 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
+......+|||+|||+++++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|++|+. ||+..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 88999999975 9999999999999999999998 9999999999
Q ss_pred EEEEecCC
Q 031599 125 LQVHLIPP 132 (156)
Q Consensus 125 i~v~~a~~ 132 (156)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 117
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.9e-18 Score=113.76 Aligned_cols=83 Identities=19% Similarity=0.403 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|..+.++.+ +..+|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999865 44589999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 986443
No 118
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-19 Score=111.65 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+ ..++.++|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4566899999999999999999999999987666 24788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 987654
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=1e-18 Score=111.62 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
..+.++|||+|||..+++++|+ ++|..||.|..+.++. ++.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3466799999999999999999 9999999999998863 56788999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 031599 126 QVHLIPPEH 134 (156)
Q Consensus 126 ~v~~a~~~~ 134 (156)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 120
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=107.34 Aligned_cols=79 Identities=13% Similarity=0.308 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..+.++ ++||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4566789999999999999999999999999999986 34999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.+....
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=4.7e-18 Score=108.92 Aligned_cols=78 Identities=22% Similarity=0.453 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 49 LVNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 49 ~~~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.....++|||+|||+ .+++++|+++|..||.|..+.+. +|||||+|.+.++|..|+..|||..++|+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 789999999999999999999999999999999
Q ss_pred EecCCCC
Q 031599 128 HLIPPEH 134 (156)
Q Consensus 128 ~~a~~~~ 134 (156)
.++.++.
T Consensus 90 ~~a~~~~ 96 (97)
T 2xnq_A 90 EVSSSNA 96 (97)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9998753
No 122
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=112.03 Aligned_cols=78 Identities=28% Similarity=0.496 Sum_probs=72.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
++|||+|||+.+++++|+++|..||.|..+.++.+ ++|||||+|.+.++|+.|+..||+..++|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999999999999877 5899999999999999999999999999999999999876
Q ss_pred CCC
Q 031599 134 HVH 136 (156)
Q Consensus 134 ~~~ 136 (156)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=113.13 Aligned_cols=78 Identities=13% Similarity=0.327 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+|||+.+++++|+++|..| .|..+.|+.++ +|+++|||||+|.+.++|++|+ .+|+..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34689999999999999999999999 89999999996 5999999999999999999999 799999999999998885
Q ss_pred C
Q 031599 132 P 132 (156)
Q Consensus 132 ~ 132 (156)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 124
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=3e-19 Score=108.90 Aligned_cols=75 Identities=16% Similarity=0.384 Sum_probs=71.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 55 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 55 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+. +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999997 4999999999999875
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=109.92 Aligned_cols=72 Identities=24% Similarity=0.443 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe-EEE
Q 031599 54 TVLYIGRIPHGF------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH-ILQ 126 (156)
Q Consensus 54 ~~l~V~~l~~~~------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~-~i~ 126 (156)
++|||+|||..+ ++++|+++|.+||.|..+.++ +.++.++|||||+|.+.++|+.|+..|||..++|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999987 35889999999999999999999999999999999 887
Q ss_pred E
Q 031599 127 V 127 (156)
Q Consensus 127 v 127 (156)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.8e-18 Score=111.37 Aligned_cols=77 Identities=26% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||..+++++|+.+|..||.|..+.++. .+|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4567999999999999999999999999999999873 3799999999999999999999999999999999998
Q ss_pred CCC
Q 031599 131 PPE 133 (156)
Q Consensus 131 ~~~ 133 (156)
.++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.1e-17 Score=115.77 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|++|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 45677999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCC
Q 031599 130 IPP 132 (156)
Q Consensus 130 a~~ 132 (156)
+.+
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 863
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-17 Score=106.41 Aligned_cols=79 Identities=22% Similarity=0.415 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQF--GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
....++|||+|||+.+++++|+++|..| |.|..+.++ +|||||+|.+.++|+.|+..||+..++|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456799999999999999999999999 899988764 579999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 031599 128 HLIPPEHVH 136 (156)
Q Consensus 128 ~~a~~~~~~ 136 (156)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpd_A 84 TLAKPVDKD 92 (99)
T ss_dssp ECCCCCCCC
T ss_pred EECCCCCCC
Confidence 999886543
No 129
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=6.3e-18 Score=122.52 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
.+.++|||+|||+++++++|+++|.+||.|.+|.|+.++.++.++|||||+|.+.++|+.|+..+|+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 131 PPEH 134 (156)
Q Consensus 131 ~~~~ 134 (156)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7543
No 130
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.7e-18 Score=115.28 Aligned_cols=83 Identities=11% Similarity=0.211 Sum_probs=73.8
Q ss_pred CcEEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH--HhCCC
Q 031599 53 ATVLYIGRI----PHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND----PEV----AEVVAD--AMHGY 118 (156)
Q Consensus 53 ~~~l~V~~l----~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~----~~~----a~~al~--~l~g~ 118 (156)
+..|||+|| |+.+++.+|+.+|..||+|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 357999999 9999999999999999999999999999999999999999996 333 788888 78999
Q ss_pred eeCCeEEEEEecCCCCC
Q 031599 119 LLFEHILQVHLIPPEHV 135 (156)
Q Consensus 119 ~i~g~~i~v~~a~~~~~ 135 (156)
.|+|++|+|.+.+....
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999999875433
No 131
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=5.2e-18 Score=116.72 Aligned_cols=80 Identities=25% Similarity=0.447 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|.++.++.+ ++|||||+|.+.++|..|+..|||..++|++|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 489999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.++.
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 132
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.9e-17 Score=108.18 Aligned_cols=76 Identities=14% Similarity=0.390 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
....++|||+|||+. +++++|+++|..||.|..+.+ .+|||||+|.+.++|+.|+..||+..++|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344579999999999 999999999999999999988 47899999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.+.
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99743
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.5e-19 Score=120.70 Aligned_cols=88 Identities=18% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE------EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL------RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH 123 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~------~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~ 123 (156)
....++|||+|||+.+++++|+.+|..||.|..+ .+.. ..++.++|||||+|.+.++|..|+..|||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3456799999999999999999999999998764 1111 24788999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCc
Q 031599 124 ILQVHLIPPEHVHPK 138 (156)
Q Consensus 124 ~i~v~~a~~~~~~~~ 138 (156)
.|.|.++.+...+..
T Consensus 121 ~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 121 PMVVQFARSARPKQD 135 (143)
T ss_dssp ECEEEECCCSCC---
T ss_pred EEEEEECCCCCCccC
Confidence 999999987655444
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-20 Score=122.35 Aligned_cols=88 Identities=17% Similarity=0.316 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKR--------LRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
..+..+|||+|||..+++++|+++|..||.|.. +.++.++.++.++|||||+|.+.++|+.|+..||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345678999999999999999999999999998 889998888999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCC
Q 031599 122 EHILQVHLIPPEHVHP 137 (156)
Q Consensus 122 g~~i~v~~a~~~~~~~ 137 (156)
|+.|.|.++.++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998876543
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-19 Score=115.69 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGA---IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~---i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
.....+|||+|||+.+++++|+++|..||. |..+.++.++. ++++|||||+|.+.++|+.|+. +|+..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999888 89999999975 9999999999999999999998 999999999999
Q ss_pred EEecCCC
Q 031599 127 VHLIPPE 133 (156)
Q Consensus 127 v~~a~~~ 133 (156)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 136
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=1.3e-17 Score=115.37 Aligned_cols=82 Identities=28% Similarity=0.558 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CC
Q 031599 133 EH 134 (156)
Q Consensus 133 ~~ 134 (156)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 137
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=112.26 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC--CeeCCeEEE
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG--YLLFEHILQ 126 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g--~~i~g~~i~ 126 (156)
..+..+|||+|||++ +++++|+++|.+||.|.++.+++. +|||||+|.+.++|+.|+..||+ ..+.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999754 79999999999999999998864 569999999
Q ss_pred EEecCCCCC
Q 031599 127 VHLIPPEHV 135 (156)
Q Consensus 127 v~~a~~~~~ 135 (156)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999986543
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=107.90 Aligned_cols=79 Identities=15% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCC-CeeCCeEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGA-IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHG-YLLFEHILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~-i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g-~~i~g~~i~v~ 128 (156)
...++|||+|||+.+++++|+++|.+||. +..+.+. .+|||||+|.+.++|+.|+..||| ..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45678999999999999999999999999 5555552 378999999999999999999999 99999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99886554
No 139
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.4e-18 Score=112.04 Aligned_cols=82 Identities=21% Similarity=0.441 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 455799999999999999999999999999999999997 99999999999999999999997 999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76544
No 140
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=112.81 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..++|||+|||+.+++++|+++|.+||.|..|.++. .+|||||+|.+.++|+.|+..|||..++|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457899999999999999999999999999998874 37899999999999999999999999999999999997
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 643
No 141
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.8e-18 Score=108.55 Aligned_cols=79 Identities=22% Similarity=0.469 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..+.++|||+|||+ .+++++|+++|..||.|..+.+. +|||||+|.+.++|+.|+..|||..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999884 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.+....
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99875443
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1.1e-17 Score=133.22 Aligned_cols=85 Identities=19% Similarity=0.360 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||+.+++++|..+|..||.|..|.|+.+..++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87644
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=6e-18 Score=119.73 Aligned_cols=84 Identities=18% Similarity=0.358 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+.+++++|+++|..||.|..|.++.++ ++.++|||||+|.+.++|+.|+..||+..++|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97643
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=1.1e-17 Score=116.08 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
+.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|||..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 6543
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=107.05 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~-~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....+|||+|||+.+++++|+++|..||.|..+ .++.++.++. |||+|.+.++|+.|+..|||..++|++|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999 5887765443 99999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98863
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=105.98 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||+.+++++|+.+|..||.|..| +.++.++. ||||+|.+.++|+.|+. ||+..++|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345789999999999999999999999999987 55545555 99999999999999999 9999999999999998
Q ss_pred CCCCCC
Q 031599 131 PPEHVH 136 (156)
Q Consensus 131 ~~~~~~ 136 (156)
.++...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 765443
No 147
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=2.7e-17 Score=117.03 Aligned_cols=86 Identities=23% Similarity=0.450 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 988654
No 148
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=2.2e-17 Score=115.06 Aligned_cols=80 Identities=25% Similarity=0.493 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44688999999999999999999999999999999999889999999999999999999999999999999999999987
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=2.5e-17 Score=118.68 Aligned_cols=85 Identities=22% Similarity=0.445 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
.+...
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
No 150
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-17 Score=103.24 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|+ .+++++|+++|..||.|..+.+. ..+|||||+|.+.++|+.|+..||+..++|++|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999996 89999999999999999999885 3478999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 84 a~~~~~~ 90 (97)
T 1x5p_A 84 ARKQPML 90 (97)
T ss_dssp CSSCCCC
T ss_pred CCCCCCC
Confidence 9876554
No 151
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=5.2e-18 Score=113.67 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIK--RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.....+|||+|||+.+++++|+++|..| .|. .|.|+.++. |+++|||||+|.+.++|++|+. +++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 4566789999999999999999999999 676 899999975 9999999999999999999997 5889999999999
Q ss_pred EecCC
Q 031599 128 HLIPP 132 (156)
Q Consensus 128 ~~a~~ 132 (156)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 152
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=109.03 Aligned_cols=79 Identities=14% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee-----CC
Q 031599 50 VNKATVLYI--GRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL-----FE 122 (156)
Q Consensus 50 ~~~~~~l~V--~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i-----~g 122 (156)
..+..+||| +||++.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 779999999999999999999999987643 78999999999999999999999988 68
Q ss_pred eEEEEEecCCCC
Q 031599 123 HILQVHLIPPEH 134 (156)
Q Consensus 123 ~~i~v~~a~~~~ 134 (156)
++|.|.++...+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997543
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=3.1e-17 Score=116.54 Aligned_cols=84 Identities=17% Similarity=0.352 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.|.++.++.++.++.++|||||+|.+.++|+.|+.. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 35667999999999999999999999999999999999988999999999999999999999965 99999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.+..
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87653
No 154
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.5e-18 Score=113.19 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAI----KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i----~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
.....+|||+|||+.+++++|+++|..||.| ..|.|+.+ .+++++|||||+|.+.++|+.|+.. |+..++|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3556899999999999999999999999875 68999998 4899999999999999999999975 9999999999
Q ss_pred EEEecCC
Q 031599 126 QVHLIPP 132 (156)
Q Consensus 126 ~v~~a~~ 132 (156)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=8.7e-18 Score=116.62 Aligned_cols=82 Identities=27% Similarity=0.516 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+. +++..++|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998899999999999999999999997 89999999999999998
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
|++
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
No 156
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.9e-18 Score=117.79 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||+++++++|+++|..|| +..|.|+.++ +++++|||||+|.+.++|+.|+ .+|+..++|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 45567999999999999999999999999 6799999996 4999999999999999999999 8899999999999999
Q ss_pred cCCCCCCC
Q 031599 130 IPPEHVHP 137 (156)
Q Consensus 130 a~~~~~~~ 137 (156)
+.+.....
T Consensus 120 a~~~~~~~ 127 (139)
T 2hgn_A 120 NSTTGASN 127 (139)
T ss_dssp CCCSCC--
T ss_pred CCCCCCCC
Confidence 98765543
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=3e-17 Score=118.89 Aligned_cols=82 Identities=24% Similarity=0.407 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+|||+.+++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|++|+..|||..|+|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999884 4579999999999999999999999999999999999998
Q ss_pred CCCC
Q 031599 132 PEHV 135 (156)
Q Consensus 132 ~~~~ 135 (156)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7543
No 158
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=7.2e-17 Score=108.39 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HILQVH 128 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~-~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~ 128 (156)
..-.|||+||++.+++++|+++|++||.|.++.++... +|| |||+|.+.++|+.|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 33478899999999999999999999999999887653 677 9999999999999999999999988 899999
Q ss_pred ecCCCCC
Q 031599 129 LIPPEHV 135 (156)
Q Consensus 129 ~a~~~~~ 135 (156)
++++...
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987643
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=4.5e-17 Score=115.72 Aligned_cols=87 Identities=17% Similarity=0.369 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4457999999999999999999999999999999999988999999999999999999999975 899999999999999
Q ss_pred CCCCCCCc
Q 031599 131 PPEHVHPK 138 (156)
Q Consensus 131 ~~~~~~~~ 138 (156)
.++.....
T Consensus 181 ~~k~~~~~ 188 (196)
T 1l3k_A 181 LSKQEMAS 188 (196)
T ss_dssp C-------
T ss_pred CChhHhcc
Confidence 98765533
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=3e-17 Score=103.19 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
...+|||+|||+.+++++|+++|.+| .|..+.+. .++|||||+|.+.++|+.|+..|||..++|++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45689999999999999999999999 99999884 468999999999999999999999999999999999997
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=8.7e-17 Score=111.87 Aligned_cols=81 Identities=11% Similarity=0.260 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~ 128 (156)
.....|||+||++.+++++|+++|++||.|.++.+.... .+|||||+|.+.++|+.|++.|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 334579999999999999999999999999999986442 47899999999999999999999999965 999999
Q ss_pred ecCCCCC
Q 031599 129 LIPPEHV 135 (156)
Q Consensus 129 ~a~~~~~ 135 (156)
+++++..
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9998643
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=6.4e-17 Score=102.07 Aligned_cols=77 Identities=23% Similarity=0.478 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe--eCCeEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL--LFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~--i~g~~i~v 127 (156)
...+.+|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|++ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999875 58999999999999883 46655 45999999
Q ss_pred EecCCCCC
Q 031599 128 HLIPPEHV 135 (156)
Q Consensus 128 ~~a~~~~~ 135 (156)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987654
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.4e-17 Score=108.78 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE-----E
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI-----L 125 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~-----i 125 (156)
....+|||+|||+.+++++|+++|..||.|..+.++.+ |||||+|.+.++|+.|+..||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34578999999999999999999999999999998755 89999999999999999999999999998 8
Q ss_pred EEEecCCCCC
Q 031599 126 QVHLIPPEHV 135 (156)
Q Consensus 126 ~v~~a~~~~~ 135 (156)
.|..+.++..
T Consensus 87 ~v~~~~~~~~ 96 (115)
T 3beg_B 87 RVKVDGPRSP 96 (115)
T ss_dssp EEEECC----
T ss_pred EeccCCCCCC
Confidence 8888776543
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.7e-17 Score=111.37 Aligned_cols=80 Identities=19% Similarity=0.461 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPE 133 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~ 133 (156)
++|||+|||+.+++++|+++|..||.|.++.++.++ ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999986 6789999999999999999999999999999999999999765
Q ss_pred C
Q 031599 134 H 134 (156)
Q Consensus 134 ~ 134 (156)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=1.1e-16 Score=115.58 Aligned_cols=78 Identities=12% Similarity=0.268 Sum_probs=72.1
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIP-HGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~-~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
+..+|||+||+ +.+++++|+++|.+||.|.++.++.++ +|||||+|.+.++|+.|+..|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 899999999999999999999998763 799999999999999999999999999999999999
Q ss_pred CCCC
Q 031599 131 PPEH 134 (156)
Q Consensus 131 ~~~~ 134 (156)
....
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=3.2e-17 Score=118.15 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..++|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999998877
Q ss_pred CCC
Q 031599 132 PEH 134 (156)
Q Consensus 132 ~~~ 134 (156)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=1.7e-16 Score=110.03 Aligned_cols=81 Identities=26% Similarity=0.471 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC--eEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE--HILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v 127 (156)
.....+|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|..|+..|||..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3456799999999999999999999999999999999998899999999999999999999999999999987 99999
Q ss_pred Eec
Q 031599 128 HLI 130 (156)
Q Consensus 128 ~~a 130 (156)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 168
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=107.43 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKT---GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
...++|||+|||+.+++++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|++|+..|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4567899999999999999999999999999 888877666 7999999999999999999999884 377887777
Q ss_pred EecCC
Q 031599 128 HLIPP 132 (156)
Q Consensus 128 ~~a~~ 132 (156)
..+.+
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 76554
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=3.8e-16 Score=104.26 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=68.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHF-GFIEFNDPEVAEVVADAMHGYLLFE--HILQVHLI 130 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~-~fv~f~~~~~a~~al~~l~g~~i~g--~~i~v~~a 130 (156)
-.|||+||++.+++++|+++|++||.|.++.++.. .|| |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35789999999999999999999999999988652 276 9999999999999999999999987 68999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 87643
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=1.2e-16 Score=99.88 Aligned_cols=71 Identities=30% Similarity=0.603 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~ 119 (156)
...++|||+|||+.+++++|+++|..| | .|.++.+..+ +|||||+|.+.++|+.|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356789999999999999999999999 8 8999988755 799999999999999999 999999
Q ss_pred eCCeEEEEE
Q 031599 120 LFEHILQVH 128 (156)
Q Consensus 120 i~g~~i~v~ 128 (156)
++|+.|.|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999986
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2.7e-16 Score=108.68 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE--EEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI--LQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~--i~v~ 128 (156)
....+|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||..++|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45578999999999999999999999999999999999889999999999999999999999999999999975 7777
Q ss_pred ec
Q 031599 129 LI 130 (156)
Q Consensus 129 ~a 130 (156)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 172
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=99.96 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=65.2
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEE
Q 031599 53 ATV-LYIGRIPHGFYEKE----MQAFFSQF-GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQ 126 (156)
Q Consensus 53 ~~~-l~V~~l~~~~t~~~----l~~~f~~~-G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~ 126 (156)
..+ |||+|||+.+++++ |+++|.+| |.|.++ ++ |+|||+|.+.++|++|++.|||..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999987 55899999 599888 33 9999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 031599 127 VHLIPPEHV 135 (156)
Q Consensus 127 v~~a~~~~~ 135 (156)
|.++..+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999987543
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=7.7e-16 Score=100.03 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeE
Q 031599 51 NKATVLYIGRIPH-----GFYEKEMQAFFSQFGAIKRLRIARNKKT-GQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHI 124 (156)
Q Consensus 51 ~~~~~l~V~~l~~-----~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~ 124 (156)
.++.+|+|.|+.. +-++++|++.|++||.|.++.++.++.+ +.++||+||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 2367999999999999999999988644 678999999999999999999999999999999
Q ss_pred EEEEecCC
Q 031599 125 LQVHLIPP 132 (156)
Q Consensus 125 i~v~~a~~ 132 (156)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999965
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.9e-16 Score=108.80 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQV 127 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~---g~~i~v 127 (156)
....+|||+|||+.+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356789999999999999999999999999999999995 6899999999999999999999999998776 499999
Q ss_pred EecC
Q 031599 128 HLIP 131 (156)
Q Consensus 128 ~~a~ 131 (156)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 175
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=3e-16 Score=109.72 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|||..+++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456799999999999999999999999987666 35889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 031599 130 IPPEH 134 (156)
Q Consensus 130 a~~~~ 134 (156)
+.+++
T Consensus 171 a~~k~ 175 (175)
T 1fje_B 171 TGEKG 175 (175)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98753
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=2.6e-16 Score=104.76 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
.....+|||+|+ .+++++|+++|..||.|..|.+. ..+|||||+|.+.++|+.|+..|||..++|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999995 69999999999999999999886 3489999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 031599 130 IPPEHVH 136 (156)
Q Consensus 130 a~~~~~~ 136 (156)
+.++...
T Consensus 108 a~~~~~~ 114 (121)
T 2bz2_A 108 ARKQPML 114 (121)
T ss_dssp CCSSCC-
T ss_pred eCCCCCC
Confidence 9876544
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=3.7e-16 Score=108.91 Aligned_cols=83 Identities=25% Similarity=0.535 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHHhCCCeeC---CeEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTG--QSKHFGFIEFNDPEVAEVVADAMHGYLLF---EHILQ 126 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~--~~kg~~fv~f~~~~~a~~al~~l~g~~i~---g~~i~ 126 (156)
+.++|||+|||+.+++++|+++|..||.|.++.++.++.++ .++|||||+|.+.++|+.|+..||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46789999999999999999999999999999999998776 89999999999999999999999998765 67788
Q ss_pred EEecCCCC
Q 031599 127 VHLIPPEH 134 (156)
Q Consensus 127 v~~a~~~~ 134 (156)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876543
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=2.6e-16 Score=109.08 Aligned_cols=80 Identities=23% Similarity=0.549 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
+.++|||+|||+++++++|+++|..||.|.++.++.++.++.++|||||+|.+.++|+.|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999999998899999999999999999999997 4678999999999886
Q ss_pred CC
Q 031599 132 PE 133 (156)
Q Consensus 132 ~~ 133 (156)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=100.57 Aligned_cols=79 Identities=22% Similarity=0.489 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...++|||+|||+.+++++|+++|..||.|..+.++.+ ++|||||+|.+.++|++++. ....+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35679999999999999999999999999999998765 58999999999999976432 123458999999999
Q ss_pred CCCCCC
Q 031599 131 PPEHVH 136 (156)
Q Consensus 131 ~~~~~~ 136 (156)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 886554
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=9e-16 Score=115.10 Aligned_cols=82 Identities=20% Similarity=0.440 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQ----AFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
....++|||+|||+.+++++|+ ++|..||.|.+|.++. +++++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999998875 67889999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 031599 126 QVHLIPPEH 134 (156)
Q Consensus 126 ~v~~a~~~~ 134 (156)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=8.5e-16 Score=110.01 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
.++|||+|||+.+++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|+.|+..+ +..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4789999999999999999999999999999999985 6899999999999999999999654 5689999999998865
Q ss_pred C
Q 031599 133 E 133 (156)
Q Consensus 133 ~ 133 (156)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=5.2e-16 Score=116.94 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEE
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKK-TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQV 127 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v 127 (156)
.....+|||+|||+. +++++|+++|..||.|..+.++.+.. |+.++|||||+|.+.++|.+|+ .|||..++|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456689999999999 99999999999999999999998865 5999999999999999999999 99999999999999
Q ss_pred EecCCC
Q 031599 128 HLIPPE 133 (156)
Q Consensus 128 ~~a~~~ 133 (156)
.++.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999875
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=1.8e-15 Score=113.60 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
....+|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 031599 131 PPEHV 135 (156)
Q Consensus 131 ~~~~~ 135 (156)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 86553
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=7e-16 Score=113.58 Aligned_cols=80 Identities=29% Similarity=0.424 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 50 VNKATVLYIGRIPHGF---------YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~---------t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
.....+|||+||+..+ ++++|+.+|++||.|.+|.++.+ +|||||+|.+.++|+.|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999865 89999999999999999999999999
Q ss_pred ------------CCeEEEEEecCCCCC
Q 031599 121 ------------FEHILQVHLIPPEHV 135 (156)
Q Consensus 121 ------------~g~~i~v~~a~~~~~ 135 (156)
.|+.|.|.||.+.+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999986543
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=2e-15 Score=113.33 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPHGF-YEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~-t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
.....+|||+|||+.+ ++++|+++|..||.|..+.++.++ +|.++|+|||+|.+.++|.+|+..|||..++|++|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3456789999999995 999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 031599 129 LIPPEHVH 136 (156)
Q Consensus 129 ~a~~~~~~ 136 (156)
++.++..+
T Consensus 260 ~a~~~~~~ 267 (284)
T 3smz_A 260 FCAPGPPG 267 (284)
T ss_dssp ECCSSSCH
T ss_pred EecCCCcc
Confidence 99887654
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=1.7e-15 Score=110.83 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 50 VNKATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
..+..+|||+|||+ .+++++|+++|..||.|..+.++.++ +|||||+|.+.++|+.|+..|||..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999998875 7899999999999999999999999999999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.+.
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99865
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=5.1e-15 Score=110.97 Aligned_cols=77 Identities=19% Similarity=0.469 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v~ 128 (156)
.....+|||+|||..+++++|+++|..||.|.++.++.++ +|||||+|.+.++|..|+..|||..++ |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3456789999999999999999999999999999998664 589999999999999999999999999 9999999
Q ss_pred ecC
Q 031599 129 LIP 131 (156)
Q Consensus 129 ~a~ 131 (156)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-14 Score=94.78 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 031599 50 VNKATVLYIGRIPHGFY-----------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY 118 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t-----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~ 118 (156)
.....+|+|.||..... +++|+++|.+||.|..+.+ .++ .++|||||+|.+.++|+.|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34577899999955433 5799999999999999966 442 26999999999999999999999999
Q ss_pred eeCCeEEEEEecCCCC
Q 031599 119 LLFEHILQVHLIPPEH 134 (156)
Q Consensus 119 ~i~g~~i~v~~a~~~~ 134 (156)
.++|++|.|.++.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999998754
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=4.9e-16 Score=108.65 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+.+++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|+.|+ .|||..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567899999999999999999999999887663 3344457888999999999999999999 5999999999999999
Q ss_pred cCCCCC
Q 031599 130 IPPEHV 135 (156)
Q Consensus 130 a~~~~~ 135 (156)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 986543
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=8.1e-15 Score=109.19 Aligned_cols=78 Identities=22% Similarity=0.526 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHL 129 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~ 129 (156)
....++|||+|||+++++++|+++|..||.|..+.+..+ +|||||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 355679999999999999999999999999999998655 79999999999999999999999999999999999
Q ss_pred cCCC
Q 031599 130 IPPE 133 (156)
Q Consensus 130 a~~~ 133 (156)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8764
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=107.32 Aligned_cols=76 Identities=18% Similarity=0.370 Sum_probs=71.5
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 031599 53 ATVLYIGRIPH-GFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIP 131 (156)
Q Consensus 53 ~~~l~V~~l~~-~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~ 131 (156)
.++|||+|||+ .+++++|+++|..||.|..+.++.++ +|||||+|.+.++|+.|+..|||..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 99999999999999999999998775 7899999999999999999999999999999999997
Q ss_pred CC
Q 031599 132 PE 133 (156)
Q Consensus 132 ~~ 133 (156)
+.
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=105.35 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v~ 128 (156)
.+..+|||+|||..+++++|+++|..|| .|..+.++.+. +|+|||+|.+.++|..|+..|||..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999986542 789999999999999999999999999 9999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99763
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=8.5e-15 Score=110.28 Aligned_cols=84 Identities=13% Similarity=0.322 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLI 130 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a 130 (156)
...+|||+|||+.+++++|+++|..|| .|..+.++.++ .+.++|||||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467999999999999999999999999 99999999885 4888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 031599 131 PPEHVH 136 (156)
Q Consensus 131 ~~~~~~ 136 (156)
.+....
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 876543
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=1.2e-14 Score=106.17 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC-CeEEEEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFG-AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF-EHILQVH 128 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G-~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~-g~~i~v~ 128 (156)
.+..+|||+|||..+++++|+++|..|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999998653 2789999999999999999999999999 9999999
Q ss_pred ecCCC
Q 031599 129 LIPPE 133 (156)
Q Consensus 129 ~a~~~ 133 (156)
++.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99763
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=6.7e-15 Score=106.24 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCe----E
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAI--KRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEH----I 124 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i--~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~----~ 124 (156)
.+..+|||+|||+.+++++|+++|.+||.| ..+.++.+. +..+|+|||+|.+.++|..|+..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 456789999999999999999999999999 889888774 55579999999999999999999999999877 5
Q ss_pred EEEEec
Q 031599 125 LQVHLI 130 (156)
Q Consensus 125 i~v~~a 130 (156)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=3.1e-14 Score=105.97 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC-CCeeC---CeEEEE
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH-GYLLF---EHILQV 127 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~-g~~i~---g~~i~v 127 (156)
...+|||+|||+.+++++|+++|..||.|..+.++.+ .++.++|||||+|.+.++|.+|+..|| +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3568999999999999999999999999999999999 589999999999999999999999995 44454 999999
Q ss_pred EecCCCC
Q 031599 128 HLIPPEH 134 (156)
Q Consensus 128 ~~a~~~~ 134 (156)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998654
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=2.3e-14 Score=92.99 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCcEEEEcCCCC--CCC--------HHHHHHHHhhcCCeeEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHhCCCe
Q 031599 52 KATVLYIGRIPH--GFY--------EKEMQAFFSQFGAIKRLRIARNKKT--GQSKHFGFIEFNDPEVAEVVADAMHGYL 119 (156)
Q Consensus 52 ~~~~l~V~~l~~--~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~--~~~kg~~fv~f~~~~~a~~al~~l~g~~ 119 (156)
++..|.+.|+-. ... .++|++.|++||.|.++.++.++.+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456788888732 332 3689999999999999999988644 3679999999999999999999999999
Q ss_pred eCCeEEEEEecCC
Q 031599 120 LFEHILQVHLIPP 132 (156)
Q Consensus 120 i~g~~i~v~~a~~ 132 (156)
++|+.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999865
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=3.4e-15 Score=96.79 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 58 IGRIPHGFYEKEMQAFF------------SQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 58 V~~l~~~~t~~~l~~~f------------~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
+.+|+..+++++|++.| ++||.|.++.++.+. ++.++|||||+|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777776666 999999999999885 57899999999999999999999999999999999
Q ss_pred EEEecC
Q 031599 126 QVHLIP 131 (156)
Q Consensus 126 ~v~~a~ 131 (156)
.|.++.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999873
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=3.8e-14 Score=98.55 Aligned_cols=75 Identities=28% Similarity=0.528 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
+.++|||+|||+.+++++|+++|..| | .|..+.+..+ +|||||+|.+.++|+.|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35789999999999999999999999 6 6777766544 799999999999999999 8999999
Q ss_pred CCeEEEEEecCCC
Q 031599 121 FEHILQVHLIPPE 133 (156)
Q Consensus 121 ~g~~i~v~~a~~~ 133 (156)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998754
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=6.1e-14 Score=92.80 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCC-----CCHHHHHHHHhhcCCeeEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 031599 52 KATVLYIGRIPHG-----FYEKEMQAFFSQFGAIKRLRIARNKK----TGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (156)
Q Consensus 52 ~~~~l~V~~l~~~-----~t~~~l~~~f~~~G~i~~~~i~~~~~----~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g 122 (156)
++++|++.|+-.. --+++|++.|++||.|.++.|+.++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678899987431 23589999999999999999998854 45678999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 031599 123 HILQVHLIPP 132 (156)
Q Consensus 123 ~~i~v~~a~~ 132 (156)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=6e-14 Score=99.60 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQF----G-------AIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
..++|||+|||+.+++++|+++|..| | .|..+.+. ..+|||||+|.+.++|+.|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45789999999999999999999999 5 56666553 44899999999999999999 8999999
Q ss_pred CCeEEEEEecCCC
Q 031599 121 FEHILQVHLIPPE 133 (156)
Q Consensus 121 ~g~~i~v~~a~~~ 133 (156)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-13 Score=85.36 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 031599 63 HGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVH 136 (156)
Q Consensus 63 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~~~~~ 136 (156)
..+++++|+++|.+||.|.+|.++ +.++|||||+|.+.++|+.|+..+++ +.|++|.|.++.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 468999999999999999999987 35689999999999999999987544 67999999999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.45 E-value=2.9e-13 Score=104.41 Aligned_cols=76 Identities=12% Similarity=0.290 Sum_probs=65.6
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC---Ce-
Q 031599 50 VNKATVLYIGR--IPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF---EH- 123 (156)
Q Consensus 50 ~~~~~~l~V~~--l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~---g~- 123 (156)
..++.+|||+| |+..+++++|+++|++||+|..+.++. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 56677999998 578999999999999999999987753 3799999999999999999999999873 44
Q ss_pred -EEEEEecC
Q 031599 124 -ILQVHLIP 131 (156)
Q Consensus 124 -~i~v~~a~ 131 (156)
.|.|.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=4e-12 Score=83.52 Aligned_cols=77 Identities=9% Similarity=0.214 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 52 KATVLYIGRIPHGFY----------EKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
++..|.+.|+-..-. +++|++.|++||.|.++.++++. .+|++||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345666766543221 25889999999999999986653 4899999999999999999999999999
Q ss_pred CeEEEEEecCC
Q 031599 122 EHILQVHLIPP 132 (156)
Q Consensus 122 g~~i~v~~a~~ 132 (156)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4.1e-11 Score=74.86 Aligned_cols=74 Identities=19% Similarity=0.404 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCCC----CCCH----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC
Q 031599 51 NKATVLYIGRIPH----GFYE----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE 122 (156)
Q Consensus 51 ~~~~~l~V~~l~~----~~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g 122 (156)
++..+|+|...+. .+.. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4455777876652 3333 6789999999999999998773 8999999999999997 99999999
Q ss_pred eEEEEEecCCC
Q 031599 123 HILQVHLIPPE 133 (156)
Q Consensus 123 ~~i~v~~a~~~ 133 (156)
+.|+|.++.+.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.8e-11 Score=78.46 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHHhC--CCeeCCeEE
Q 031599 50 VNKATVLYIGRIPHG-FYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFND-PEVAEVVADAMH--GYLLFEHIL 125 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~-~~~a~~al~~l~--g~~i~g~~i 125 (156)
-.....|||+||+.. ++.++|+++|..||+|..|.++.+.. .|||.|.+ ..+|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456789999999999 99999999999999999999988753 69999999 899999999995 677889888
Q ss_pred EEEecCC
Q 031599 126 QVHLIPP 132 (156)
Q Consensus 126 ~v~~a~~ 132 (156)
.+.+...
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8877653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.7e-10 Score=70.44 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCCCC-----CCH----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCee
Q 031599 50 VNKATVLYIGRIPHG-----FYE----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLL 120 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~-----~t~----~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i 120 (156)
.++..+|+|..++.. +.. .+|.+.|.+||.+..++++.++ +||+|.+.++|.+|+. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 355668889877643 222 5689999999999999998883 9999999999999997 999999
Q ss_pred CCeEEEEEecCC
Q 031599 121 FEHILQVHLIPP 132 (156)
Q Consensus 121 ~g~~i~v~~a~~ 132 (156)
+|+.|+|.+-.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999987643
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=6.2e-10 Score=80.72 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 031599 65 FYEKEMQAFFSQFGAIKRLRIARNK----KTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPP 132 (156)
Q Consensus 65 ~t~~~l~~~f~~~G~i~~~~i~~~~----~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~~a~~ 132 (156)
-.+++|.+.|.+||.|..+.++.+. .++..+|++||+|.+.++|.+|+..|||..++|+.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999998553 3458999999999999999999999999999999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=1e-07 Score=61.19 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQF-----GAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
+..++|-+-|||..++...|+.++.++ |.+..+.+..+ -+.|+|+|.+...|-+|.-.|+|..+.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 456778888999999999999999999 99999999888 4689999999999999988999999999999
Q ss_pred EEEec
Q 031599 126 QVHLI 130 (156)
Q Consensus 126 ~v~~a 130 (156)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98754
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=5.7e-05 Score=47.91 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh-----cCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQ-----FGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~-----~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
.....|.|.|||+.+.++.|+-+|+. -|++..+.... +.|+|+|.+...|++.+.. ..+.+++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 34568999999999999999999987 25677775532 5899999999999999953 4778889999
Q ss_pred EEEecCCCCCCCcccccccc
Q 031599 126 QVHLIPPEHVHPKLLYFVEM 145 (156)
Q Consensus 126 ~v~~a~~~~~~~~~~~~~~~ 145 (156)
.|....+.....-+.++.+.
T Consensus 77 sV~P~~~~~~~r~ll~gl~~ 96 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPP 96 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCC
T ss_pred EEEcCCCCCcceEeeecCCC
Confidence 99888877766666666553
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.04 E-value=2.7e-05 Score=48.87 Aligned_cols=58 Identities=17% Similarity=0.429 Sum_probs=50.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~ 116 (156)
....+.++| .+|+.+...||.++|..|| -..|.++.|- .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455678888 9999999999999999999 4667888874 89999999999999998763
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=3.5e-05 Score=49.05 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCCCCCH-----HHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEE
Q 031599 51 NKATVLYIGRIPHGFYE-----KEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHIL 125 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~-----~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i 125 (156)
+.+.+|+|.||+..+-. +.++++|..|+++....+...- .-..|.|.+.++|.+|-..||+..++|.+|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 45678999999886522 5778999999998887766552 256899999999999999999999999999
Q ss_pred EEEecCCCCC
Q 031599 126 QVHLIPPEHV 135 (156)
Q Consensus 126 ~v~~a~~~~~ 135 (156)
+|-++++-..
T Consensus 77 r~YFgq~~~~ 86 (104)
T 1wey_A 77 KLYFAQTLHI 86 (104)
T ss_dssp EEECCCCSSC
T ss_pred EEEecCCCCC
Confidence 9999986543
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.76 E-value=5.7e-05 Score=47.52 Aligned_cols=56 Identities=18% Similarity=0.432 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~ 116 (156)
..+.++| ++|+.+...||.++|..|| ...|.++.|- .|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3467777 9999999999999999999 6778888884 89999999999999998774
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.0007 Score=42.11 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=55.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ--SKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~--~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.+|.|++||+..|++++.+.+..+..+....++....+.+ .-+-|||.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4688999999999999999999888776666655543332 3457999999999999999999998764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.0026 Score=41.43 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCC-eEEEEE
Q 031599 50 VNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFE-HILQVH 128 (156)
Q Consensus 50 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g-~~i~v~ 128 (156)
.....-|.|.+.|+... ..+-..|.+||.|.+..... ....-.|.|.+..+|++||. .||..++| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 34466788889999864 56777899999999887621 24699999999999999995 59999985 556665
Q ss_pred ec
Q 031599 129 LI 130 (156)
Q Consensus 129 ~a 130 (156)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.73 E-value=0.0037 Score=39.19 Aligned_cols=69 Identities=16% Similarity=0.352 Sum_probs=49.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHhCCCeeC
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQ--SKHFGFIEFNDPEVAEVVADAMHGYLLF 121 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~--~kg~~fv~f~~~~~a~~al~~l~g~~i~ 121 (156)
.-+|.|+.||+.+|++++.+.+..+-++....++....+.+ .-.-|||.|.+.+++..-.+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34689999999999999887777655543222222222221 2346899999999999999999998754
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.49 E-value=0.0036 Score=41.34 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeec--------CCCC-----CcccEEEEEEcCHHHHHHHHHHhCC
Q 031599 52 KATVLYIGRIPHGFYEKEMQAFFSQFGAIKRL-RIARN--------KKTG-----QSKHFGFIEFNDPEVAEVVADAMHG 117 (156)
Q Consensus 52 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~-~i~~~--------~~~~-----~~kg~~fv~f~~~~~a~~al~~l~g 117 (156)
...-|.|.+.|+..+.. +-+.|++||.|.+- ..... +... .....-.|+|.+..+|++||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34567788998877655 56679999998772 11110 0001 134577999999999999995 599
Q ss_pred CeeCCeEEEEEecCC
Q 031599 118 YLLFEHILQVHLIPP 132 (156)
Q Consensus 118 ~~i~g~~i~v~~a~~ 132 (156)
..++|.-|-|....+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887753
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.32 E-value=0.0024 Score=51.00 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=41.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 031599 53 ATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVAD 113 (156)
Q Consensus 53 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~ 113 (156)
.+.|||. .+..+++.+|.++|.+||+|..+.+-.+. ..|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 3689997 79999999999999999999999886653 3799999999999887753
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.17 E-value=0.0064 Score=40.96 Aligned_cols=35 Identities=20% Similarity=0.040 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 031599 82 RLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGY 118 (156)
Q Consensus 82 ~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~ 118 (156)
.+.++.+. +..+|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35566663 468999999999999999999888753
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.00 E-value=0.0051 Score=41.18 Aligned_cols=41 Identities=15% Similarity=-0.144 Sum_probs=37.4
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHh-CCCeeCCeEEEEEecCC
Q 031599 91 TGQSKHFGFIEFNDPEVAEVVADAM-HGYLLFEHILQVHLIPP 132 (156)
Q Consensus 91 ~~~~kg~~fv~f~~~~~a~~al~~l-~g~~i~g~~i~v~~a~~ 132 (156)
.+..+|+++|+|.+.++|++|+..+ ||..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4577999999999999999999999 9999999 999998765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.70 E-value=0.14 Score=41.35 Aligned_cols=57 Identities=18% Similarity=0.457 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhC
Q 031599 51 NKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMH 116 (156)
Q Consensus 51 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~ 116 (156)
..++.++|+ ++..+...+|.++|..||. .++.++.+. .|||.|.+.+.|..++..++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 345677776 8889999999999999995 566666663 89999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=74.12 E-value=10 Score=21.71 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=40.5
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCC-----eeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCeeCCeEEEEE
Q 031599 55 VLYIG-RIPHGFYEKEMQAFFSQFGA-----IKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVH 128 (156)
Q Consensus 55 ~l~V~-~l~~~~t~~~l~~~f~~~G~-----i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~i~g~~i~v~ 128 (156)
++|+. +-...+...+|-.++..-+. |-.+.+.. .|.||+... ..+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 35554 22234566777777765433 34455533 389999854 56778888999999999999887
Q ss_pred ecC
Q 031599 129 LIP 131 (156)
Q Consensus 129 ~a~ 131 (156)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.84 E-value=1.1e+02 Score=18.88 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHhCCCe-eCCeEEEEEecCCCC
Q 031599 60 RIPHGFYEKEMQAFFS-QFGAIKRLRIARNKKTGQSKHFGFIEFNDPEVAEVVADAMHGYL-LFEHILQVHLIPPEH 134 (156)
Q Consensus 60 ~l~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~kg~~fv~f~~~~~a~~al~~l~g~~-i~g~~i~v~~a~~~~ 134 (156)
.++..+.-++|.+-.. .||.-..++...+ -..|-..+.++..+|++.|+... ..+-+| -+..+++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrI--lL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI--LLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEE--EEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEE--EEecCCC
Confidence 4677888888877665 5899888877633 36788899999999999988653 334444 4444443
No 224
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=26.41 E-value=74 Score=23.04 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~ 88 (156)
..+.|+|+|+.++...|..++.. ..+..+.++.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45789999999999999999987 66666555443
No 225
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=23.05 E-value=41 Score=24.55 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=26.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeec
Q 031599 54 TVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARN 88 (156)
Q Consensus 54 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~i~~~ 88 (156)
....|+|||+.++...|..++.....+..+.++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 35789999999999999999976555666655443
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.28 E-value=1.9e+02 Score=19.64 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=34.8
Q ss_pred EEEEcCCCC---------CCCHHHHHHHH--hhcCCeeEEEEeecCCCCCcccEEEEEEcC-HHHHHHHH
Q 031599 55 VLYIGRIPH---------GFYEKEMQAFF--SQFGAIKRLRIARNKKTGQSKHFGFIEFND-PEVAEVVA 112 (156)
Q Consensus 55 ~l~V~~l~~---------~~t~~~l~~~f--~~~G~i~~~~i~~~~~~~~~kg~~fv~f~~-~~~a~~al 112 (156)
.+.|-|++. ..+...|.+.| ..|.++. +..... ...+.|++.|.|.. -.-...|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~--~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWN--YLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEEC--SSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEeccc--CCCCceeEEEEecCChHHHHHHH
Confidence 445556665 13457888877 8898865 433344 24578999999974 44444444
Done!